Query T0525 APC41548.0, unknown, 215 residues
Match_columns 215
No_of_seqs 63 out of 65
Neff 4.1
Searched_HMMs 11830
Date Fri May 21 18:04:31 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0525.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0525.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06335 DUF1054: Protein of u 100.0 0 0 567.5 12.6 186 16-208 1-194 (194)
2 PF10786 G6PD_bact: Glucose-6- 91.1 0.13 1.1E-05 27.7 4.5 186 16-211 2-214 (215)
3 PF09901 DUF2128: Uncharacteri 51.3 3.6 0.0003 18.8 2.3 30 145-174 39-68 (70)
4 PF10548 P22_AR_C: P22AR C-ter 51.0 0.85 7.2E-05 22.7 -0.9 44 30-76 23-66 (74)
5 PF06698 DUF1192: Protein of u 17.6 17 0.0014 14.7 1.0 34 17-50 14-47 (59)
6 PF11735 CAP59_mtransfer: Cryp 17.4 25 0.0021 13.6 2.5 41 8-49 23-65 (244)
7 PF10835 DUF2573: Protein of u 16.5 17 0.0014 14.7 0.7 34 39-72 3-44 (82)
8 PF09863 DUF2090: Uncharacteri 15.4 28 0.0024 13.3 3.5 23 189-211 288-310 (311)
9 PF00770 Peptidase_C5: Adenovi 11.8 5.3 0.00045 17.8 -2.9 44 83-126 36-79 (183)
10 PF05402 PqqD: Coenzyme PQQ sy 11.1 31 0.0026 13.1 0.8 67 67-143 1-67 (81)
No 1
>PF06335 DUF1054: Protein of unknown function (DUF1054); InterPro: IPR009403 This family consists of several hypothetical bacterial proteins of unknown function.; PDB: 2a8e_A.
Probab=100.00 E-value=0 Score=567.48 Aligned_cols=186 Identities=30% Similarity=0.442 Sum_probs=174.2
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 07754200036886899999998405799999999988887630787422362200677788683102564077886434
Q T0525 16 LLPEWVSIFDIADFSGRMLRIRGDIRPALLRLASRLAELLNESPGPRPWYPHVASHMRRRVNPPPETWLALGPEKRGYKS 95 (215)
Q Consensus 16 ~~p~~f~vF~i~gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtvNPP~dTWvAfa~nKRGYKm 95 (215)
|+++||+||+|+|||+||++||++|||||++||++|+|+||+.+|+ +||+|||||||||||||+|||||||+|||||||
T Consensus 1 Ft~~DF~vF~i~gLd~RM~~I~~~I~PKf~~lg~~~~~~Ls~~~g~-~~y~HVAKHaRRtvNPP~dTWvAfs~nKRGYKm 79 (194)
T PF06335_consen 1 FTQKDFDVFEIDGLDARMEAIREQIQPKFEQLGEYFAPYLSTQTGE-EFYPHVAKHARRTVNPPKDTWVAFSPNKRGYKM 79 (194)
T ss_dssp --HHHHGGGG----HHHHHHHTTTHHHHHHH----HHHHHHHH------EEEE---TTT-SS--S---EEEES-----TT
T ss_pred CCHHCCCEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 9622043032798799999999861868999999999998651287-421447777504679983533431589886345
Q ss_pred CCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74124565236368887520038456789999985334567788873785502242103544455679889999999987
Q T0525 96 YAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKVGDLRDFGPVHDDPMADPPKVEWDPRVFGERLG 175 (215)
Q Consensus 96 lPHFqIGl~~dhlFiw~avi~E~~~k~~~a~~~~~~~~~~l~~l~~~lP~d~~~s~DH~kp~~~~~~~~~~l~~~~eRl~ 175 (215)
|||||||||+||||||||+|||+|+|++++..+.++.+ .+ +++|+||+||.|||+|++.+ .++.+|+++++|++
T Consensus 80 lPHfqiGlw~dhlFi~~a~i~E~~~k~~~a~~~~~~~~----~l-~~lP~df~~s~DH~k~~~~~-~~~~~l~~~~~R~~ 153 (194)
T PF06335_consen 80 LPHFQIGLWDDHLFIWFAVIYESPNKEEIAKALLKHFD----LL-KALPDDFVWSPDHMKPETQP-LSELNLQQAIERFQ 153 (194)
T ss_dssp S-EEEE---SSEEEEEEEE-TT-TTTTT---HHHHTHH----HH-HHS-TT-EEBS-TT----EE-GGG--HHHHHHHHH
T ss_pred CCCEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHH----HH-HHCCCCCEEECCCCCCCCCC-CCCCCHHHHHHHHH
T ss_conf 77667776266079999873248017999999997158----99-84898757764657788757-46032999999998
Q ss_pred HHCCCCEEEEEECC--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 30631011211137--------2789999999999998999
Q T0525 176 SLKSASLDIGFRVT--------FDTSLAGIVKTIRTFDLLY 208 (215)
Q Consensus 176 ~VKKaElliG~~~~--------~D~~l~~i~~tf~~LlPlY 208 (215)
+|||||||||++|+ +|++++.|++||.+|+|||
T Consensus 154 ~VKKaE~liGr~i~~~d~~~~~~~~~~~~i~~tf~~LlplY 194 (194)
T PF06335_consen 154 TVKKAEFLIGRQIPPDDPLLMSPEAFLAFIEDTFDQLLPLY 194 (194)
T ss_dssp H-TT--EEE-EEEEHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 50343226635306865022998999999999999850569
No 2
>PF10786 G6PD_bact: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Probab=91.05 E-value=0.13 Score=27.75 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=86.2
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHHCC--------HHHHHHHH---HHHHHHHHHCCCCCC-CCCCHHHCCCCCCCCCCCE
Q ss_conf 07754200036886899999998405--------79999999---998888763078742-2362200677788683102
Q T0525 16 LLPEWVSIFDIADFSGRMLRIRGDIR--------PALLRLAS---RLAELLNESPGPRPW-YPHVASHMRRRVNPPPETW 83 (215)
Q Consensus 16 ~~p~~f~vF~i~gLd~RM~aIr~~I~--------PKf~~lG~---~~~p~Ls~~~g~e~~-y~HVAKHaRRtvNPP~dTW 83 (215)
|+|++|.+|+++-+. -..|++... -+|.+..+ .+.-..++..|..+| =|||-+-.--= |--.-=|
T Consensus 2 Lt~~~~~lFd~p~fq--FkqlK~~~~pEei~~iK~~yK~~Wq~WK~~~l~va~~L~~~~fAkphIEsWtNGW-qlR~HFw 78 (215)
T PF10786_consen 2 LTEQMCDLFDRPFFQ--FKQLKEKYSPEEIPQIKADYKAVWQKWKQLILQVAQQLPQDGFAKPHIESWTNGW-QLRAHFW 78 (215)
T ss_pred CCHHHHHHHCCHHHH--HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC-CHHHHHH
T ss_conf 886888886851557--9999875196667889999999999999999999986665788734676542554-1136789
Q ss_pred EEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCHHH----HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 5640778864347412456523636888752003845678----999998533456778887378550224210354445
Q T0525 84 LALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEERK----NLGRWMSRSGPAFEQWKKKVGDLRDFGPVHDDPMAD 159 (215)
Q Consensus 84 vAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~k~~----~a~~~~~~~~~~l~~l~~~lP~d~~~s~DH~kp~~~ 159 (215)
++|--..|- ..-|-+.|=+-+.++=|++-+-+=--.+++ ....++.....--+ ...+-+=+.|-.|.++- .
T Consensus 79 A~yr~~~~~-d~aaclsVlLnkkqLqV~L~~q~Yksd~s~~s~~~YNqlL~~l~~w~~--~~~~~~~~iW~~~E~E~--~ 153 (215)
T PF10786_consen 79 AYYRYEFRA-DEAACLSVLLNKKQLQVYLMWQHYKSDRSQISVEQYNQLLADLPEWSD--TIDFADFYIWDGDESEY--D 153 (215)
T ss_pred HHHHHHHHC-CHHHHHHHHHHCCEEEEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHCC--HHHHHHEEEECCCHHHH--C
T ss_conf 998646200-255699998500214788887740021167999999999998464202--45430023316734331--1
Q ss_pred CCCCHHHH------HHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 56798899------9999998730631011211137278-----9999999999998999997
Q T0525 160 PPKVEWDP------RVFGERLGSLKSASLDIGFRVTFDT-----SLAGIVKTIRTFDLLYAEA 211 (215)
Q Consensus 160 ~~~~~~~l------~~~~eRl~~VKKaElliG~~~~~D~-----~l~~i~~tf~~LlPlYk~a 211 (215)
.+++..+. ++.+ .++. ...-|+||+.+-++. ....|.+|.++|+|||..+
T Consensus 154 D~l~l~~~l~~~~~~~~~-~~~~-~~~~f~iGK~~fr~~~~~~d~~~~i~~~i~~L~PLYe~~ 214 (215)
T PF10786_consen 154 DHLPLKDYLSDTDKQQQF-NLRA-DEDFFCIGKFAFRDQLQVIDMEEFIVETIRQLLPLYEKC 214 (215)
T ss_pred CHHHHHHHHCCCCCHHHH-HHHC-CCCEEEHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 217799987021207889-8745-444031103541363001059999999999987788862
No 3
>PF09901 DUF2128: Uncharacterized protein conserved in bacteria (DUF2128)
Probab=51.27 E-value=3.6 Score=18.84 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.9
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 550224210354445567988999999998
Q T0525 145 DLRDFGPVHDDPMADPPKVEWDPRVFGERL 174 (215)
Q Consensus 145 ~d~~~s~DH~kp~~~~~~~~~~l~~~~eRl 174 (215)
+-++||+||++..+.-.++.+++..+.+-|
T Consensus 39 DIR~W~pdh~kMgKGITLt~eE~~~Lk~~l 68 (70)
T PF09901_consen 39 DIRDWSPDHEKMGKGITLTEEELKALKELL 68 (70)
T ss_pred CCCCCCCCHHHCCCCEEECHHHHHHHHHHH
T ss_conf 010158342223685150599999999997
No 4
>PF10548 P22_AR_C: P22AR C-terminal domain
Probab=51.04 E-value=0.85 Score=22.67 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
Q ss_conf 89999999840579999999998888763078742236220067778
Q T0525 30 SGRMLRIRGDIRPALLRLASRLAELLNESPGPRPWYPHVASHMRRRV 76 (215)
Q Consensus 30 d~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtv 76 (215)
-.||..+-.+|-|-|.+||..++|-+-... .| |.++-+|+|+..
T Consensus 23 ~~~m~~~~~~l~p~L~~l~S~~a~~~ys~a-~E--Y~~~l~~ar~iL 66 (74)
T PF10548_consen 23 AERMRELLGELYPPLKALGSPFAPRVYSIA-YE--YRRTLERARPIL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HH--HHHHHHHHHHHH
T ss_conf 999999999998999987797450165479-99--999999999999
No 5
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=17.60 E-value=17 Score=14.72 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7754200036886899999998405799999999
Q T0525 17 LPEWVSIFDIADFSGRMLRIRGDIRPALLRLASR 50 (215)
Q Consensus 17 ~p~~f~vF~i~gLd~RM~aIr~~I~PKf~~lG~~ 50 (215)
...|....+++.|++|.+.++.+|---=.++...
T Consensus 14 ig~DLs~LSv~EL~eRIa~L~aEIaRle~~~~~K 47 (59)
T PF06698_consen 14 IGEDLSLLSVDELEERIALLQAEIARLEAAIAKK 47 (59)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5677311489999999999999999999999999
No 6
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1
Probab=17.43 E-value=25 Score=13.64 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCC--CEEECCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 7887786407754--20003688689999999840579999999
Q T0525 8 TIERLQDYLLPEW--VSIFDIADFSGRMLRIRGDIRPALLRLAS 49 (215)
Q Consensus 8 ~~~~~~~~~~p~~--f~vF~i~gLd~RM~aIr~~I~PKf~~lG~ 49 (215)
+.-++.++|+|.+ +.|++=+.-|+--++++ .+++.|+++|-
T Consensus 23 al~~Li~~LG~~NvfvSIyE~~S~D~T~~aL~-~L~~~L~~lgv 65 (244)
T PF11735_consen 23 ALVELIRLLGPENVFVSIYENDSWDGTKAALR-ALDAELDRLGV 65 (244)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH-HHHHHHHHCCC
T ss_conf 99999998595638999984799865899999-99999987799
No 7
>PF10835 DUF2573: Protein of unknown function (DUF2573)
Probab=16.49 E-value=17 Score=14.72 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=19.9
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCC--------CCCCCCHHHC
Q ss_conf 405799999999988887630787--------4223622006
Q T0525 39 DIRPALLRLASRLAELLNESPGPR--------PWYPHVASHM 72 (215)
Q Consensus 39 ~I~PKf~~lG~~~~p~Ls~~~g~e--------~~y~HVAKHa 72 (215)
..+++|..|-+.+...|--.+.+| .+|.||||-+
T Consensus 3 kl~eqldgL~eKyTELLlGEt~~e~kE~Vk~w~lYshiAKsM 44 (82)
T PF10835_consen 3 KLDEQLDGLLEKYTELLLGETNEELKEKVKQWILYSHIAKSM 44 (82)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 678999899999999995589899999999999999998757
No 8
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090)
Probab=15.37 E-value=28 Score=13.33 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72789999999999998999997
Q T0525 189 TFDTSLAGIVKTIRTFDLLYAEA 211 (215)
Q Consensus 189 ~~D~~l~~i~~tf~~LlPlYk~a 211 (215)
++++.++.|..+|.+|.-+++.+
T Consensus 288 ~D~~~v~~va~~y~~Li~~W~~~ 310 (311)
T PF09863_consen 288 DDEEAVAEVAANYRRLIDIWRQA 310 (311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88999999999999999999852
No 9
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled , . Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors , . However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 , .; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1nln_A 1avp_A.
Probab=11.84 E-value=5.3 Score=17.81 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 25640778864347412456523636888752003845678999
Q T0525 83 WLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEERKNLG 126 (215)
Q Consensus 83 WvAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~k~~~a~ 126 (215)
|+||+=|++.|+++=.=-.|.-|..|.-.+.+.||.--|+....
T Consensus 36 WiA~Aw~P~s~t~Y~FDPfGfsd~~L~q~Y~FeY~~llkRSAL~ 79 (183)
T PF00770_consen 36 WIAFAWDPRSRTFYMFDPFGFSDQKLKQIYQFEYEGLLKRSALA 79 (183)
T ss_dssp EEEEEEETTTTEEEEE------HHHHHHHH----HHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78877648866489877988878999998723599898887511
No 10
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; GO: 0018189 pyrroloquinoline quinone biosynthetic process
Probab=11.06 E-value=31 Score=13.06 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 62200677788683102564077886434741245652363688875200384567899999853345677888737
Q T0525 67 HVASHMRRRVNPPPETWLALGPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKV 143 (215)
Q Consensus 67 HVAKHaRRtvNPP~dTWvAfa~nKRGYKmlPHFqIGl~~dhlFiw~avi~E~~~k~~~a~~~~~~~~~~l~~l~~~l 143 (215)
+-|.|.|=.-.+=.++||.++|.+ .++|-+...+||- .++....-.++...+.+..+..-+++...+
T Consensus 1 ~l~~~~r~~~d~~~~~~vll~~e~---------~~~LN~~g~~Iw~-l~dg~~tv~~Iv~~L~~~Y~~~~e~~~~dv 67 (81)
T PF05402_consen 1 RLAPGVRLQFDKVRGEWVLLSPER---------YFTLNETGSEIWE-LIDGQRTVEEIVAELAEEYDVDPEEIEQDV 67 (81)
T ss_pred CCCCCCEEEEECCCCEEEEECCCC---------EEECCHHHHHHHH-HCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 998871302432388489977996---------5733689999999-835999899999999988199789999999
Done!