Query T0525 APC41548.0, unknown, 215 residues
Match_columns 215
No_of_seqs 63 out of 65
Neff 4.1
Searched_HMMs 15564
Date Fri May 21 18:04:25 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0525.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0525.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a8ea1 d.296.1.1 (A:2-211) Hy 100.0 0 0 596.8 19.4 195 16-215 5-209 (210)
2 d2a8ea1 d.296.1.1 (A:2-211) Hy 100.0 0 0 583.0 19.4 195 16-215 5-209 (210)
3 d1kqra_ b.29.1.14 (A:) vp4 sia 26.2 13 0.0008 16.2 1.1 40 74-121 8-48 (160)
4 d1mso.1 g.1.1.1 (B:,A:) Insuli 23.0 19 0.0012 15.1 1.6 19 48-66 8-26 (52)
5 d2v5pc1 g.1.1.1 (C:6-63) Insul 18.7 31 0.002 13.8 2.1 20 48-67 5-24 (58)
6 d1gs9a_ a.24.1.1 (A:) Apolipop 16.7 34 0.0022 13.5 4.1 33 27-59 70-102 (144)
7 d2dm9a1 d.81.4.1 (A:81-198) V- 13.9 41 0.0026 13.1 1.7 14 193-206 97-110 (118)
8 d1iega_ b.57.1.1 (A:) Human cy 13.8 15 0.00094 15.8 -0.8 33 39-72 108-154 (248)
9 d1xhja_ d.52.8.1 (A:) Nitrogen 13.1 43 0.0028 12.9 2.4 22 25-46 4-25 (88)
10 d1iega_ b.57.1.1 (A:) Human cy 12.7 16 0.001 15.5 -0.8 32 40-72 109-154 (248)
No 1
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=0 Score=596.78 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=185.7
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 07754200036886899999998405799999999988887630787422362200677788683102564077886434
Q T0525 16 LLPEWVSIFDIADFSGRMLRIRGDIRPALLRLASRLAELLNESPGPRPWYPHVASHMRRRVNPPPETWLALGPEKRGYKS 95 (215)
Q Consensus 16 ~~p~~f~vF~i~gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtvNPP~dTWvAfa~nKRGYKm 95 (215)
|+++||+||+|+|||+||++||++|||||++||++|+|+||+.+|++ ||+|||||||||||||+|||||||+|||||||
T Consensus 5 Ft~~DF~vF~i~gLd~RM~aI~~~I~PKf~~lg~~~~~~Ls~~~g~e-~f~HVAKHaRRtvNPP~dTWvAfs~nKRGYK~ 83 (210)
T d2a8ea1 5 FTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGDE-MFPHVAKHARRSVNPPADSWVAFANSKRGYKK 83 (210)
T ss_dssp CCHHHHGGGGSCSHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSSC-CEEEECCCTTTCSSCCSCEEEEEESCSSCSTT
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 03564130138987999999998638699999999999987522985-31446666325679982534532589986456
Q ss_pred CCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 74124565236368887520038456789999985334567788873785502242103544455--6798899999999
Q T0525 96 YAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKVGDLRDFGPVHDDPMADP--PKVEWDPRVFGER 173 (215)
Q Consensus 96 lPHFqIGl~~dhlFiw~avi~E~~~k~~~a~~~~~~~~~~l~~l~~~lP~d~~~s~DH~kp~~~~--~~~~~~l~~~~eR 173 (215)
|||||||||+||||||||||||+|+|.+++..++.+ ++++.++||+||+||.|||+|++.+ +++.++|++++||
T Consensus 84 lPHFqiGlw~dhlFiw~a~i~E~p~k~~~~~~~~~~----~~~l~~~lP~~f~~s~DH~kp~~~~~~~l~~~~l~~~~eR 159 (210)
T d2a8ea1 84 LPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVN----QETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFER 159 (210)
T ss_dssp SCEEEEEECSSEEEEEEEECTTCTTHHHHHHHHHHT----HHHHHHHSCTTCEEESCTTSCCCEEGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHH----HHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 875677652662799999841485568999999850----4999985886545220117755556778999999999999
Q ss_pred HHHHCCCCEEEEEEC--------CHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 873063101121113--------727899999999999989999974069
Q T0525 174 LGSLKSASLDIGFRV--------TFDTSLAGIVKTIRTFDLLYAEAEKGS 215 (215)
Q Consensus 174 l~~VKKaElliG~~~--------~~D~~l~~i~~tf~~LlPlYk~a~~~s 215 (215)
|++|||||||||++| ++|+++++|++||++|+|||++|+++|
T Consensus 160 ~~~VKKaE~liG~~i~~~d~~~~~~~~~~~~i~~tf~~LlplY~la~~~~ 209 (210)
T d2a8ea1 160 LQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVT 209 (210)
T ss_dssp HHHCTTCCEEEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76135015787676258642008979999999999999989999987523
No 2
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=0 Score=582.97 Aligned_cols=195 Identities=26% Similarity=0.363 Sum_probs=184.3
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 07754200036886899999998405799999999988887630787422362200677788683102564077886434
Q T0525 16 LLPEWVSIFDIADFSGRMLRIRGDIRPALLRLASRLAELLNESPGPRPWYPHVASHMRRRVNPPPETWLALGPEKRGYKS 95 (215)
Q Consensus 16 ~~p~~f~vF~i~gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~g~e~~y~HVAKHaRRtvNPP~dTWvAfa~nKRGYKm 95 (215)
|+|+||++|+|+|||+||++|+++|||||++||++|+|+||+.+|+| ||+|||||||||||||+|||||||+|||||||
T Consensus 5 Ft~~DF~~F~i~gLd~RM~ai~~~IqPKf~~lg~~~~~~Ls~~tg~e-~f~HvAKHaRR~vNpP~dTWvAfs~nkRGYK~ 83 (210)
T d2a8ea1 5 FTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGDE-MFPHVAKHARRSVNPPADSWVAFANSKRGYKK 83 (210)
T ss_dssp CCHHHHGGGGSCSHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSSC-CEEEECCCTTTCSSCCSCEEEEEESCSSCSTT
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 44121110056897899999987404799999999988775530787-43354100545688683314665076886334
Q ss_pred CCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 74124565236368887520038456789999985334567788873785502242103544455--6798899999999
Q T0525 96 YAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKVGDLRDFGPVHDDPMADP--PKVEWDPRVFGER 173 (215)
Q Consensus 96 lPHFqIGl~~dhlFiw~avi~E~~~k~~~a~~~~~~~~~~l~~l~~~lP~d~~~s~DH~kp~~~~--~~~~~~l~~~~eR 173 (215)
+||||||||+||||||||||||||+|++++.+++.+ +..+.++||+||+||.|||+|++.+ +++.++|+++++|
T Consensus 84 lPHFqiGlw~dhlFiw~avi~E~p~k~~~a~~~~~~----~~~l~~~LP~~~~~S~DHtk~~~~~~~~~~~~~L~~~~eR 159 (210)
T d2a8ea1 84 LPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVN----QETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFER 159 (210)
T ss_dssp SCEEEEEECSSEEEEEEEECTTCTTHHHHHHHHHHT----HHHHHHHSCTTCEEESCTTSCCCEEGGGCCHHHHHHHHHH
T ss_pred CCEEEEEEEECEEEEEEEHHHCCCCHHHHHHHHHHH----HHHHHHHCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 630556553042254411121382578999999875----5899985773405541016400022477898899999988
Q ss_pred HHHHCCCCEEEEEECCH--------HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87306310112111372--------7899999999999989999974069
Q T0525 174 LGSLKSASLDIGFRVTF--------DTSLAGIVKTIRTFDLLYAEAEKGS 215 (215)
Q Consensus 174 l~~VKKaElliG~~~~~--------D~~l~~i~~tf~~LlPlYk~a~~~s 215 (215)
+++||||||+|||+|++ |+++++|++||++|+|||++++++|
T Consensus 160 ~~~vKK~E~lvG~~~~~e~~~~~~~~~~l~~i~~tf~~LlPlYk~~~~~~ 209 (210)
T d2a8ea1 160 LQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVT 209 (210)
T ss_dssp HHHCTTCCEEEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74268510112321067674448978999999999999999999997621
No 3
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus rotavirus [TaxId: 10969]}
Probab=26.24 E-value=13 Score=16.24 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCEEEEEE-CCEEEEEEEEECCCCCH
Q ss_conf 7788683102564077886434741245652-36368887520038456
Q T0525 74 RRVNPPPETWLALGPEKRGYKSYAHSGVFIG-GRGLSVRFILKDEAIEE 121 (215)
Q Consensus 74 RtvNPP~dTWvAfa~nKRGYKmlPHFqIGl~-~dhlFiw~avi~E~~~k 121 (215)
-+.|||.|=|+-++|+..|- .+= -+..=.|+|+|-=-||-
T Consensus 8 tsf~pp~~YWiLl~P~~~GV--------V~E~Tnntd~W~A~ilvePNv 48 (160)
T d1kqra_ 8 TTFNPPVDYWMLLAPTAAGV--------VVEGTNNTDRWLATILVEPNV 48 (160)
T ss_dssp EEECCCTTEEEEECCCSSEE--------EEEEECSSSCEEEEEEECSSE
T ss_pred CCCCCCCCEEEEECCCCCCE--------EEECCCCCCEEEEEEEECCCC
T ss_conf 40069986589988798988--------999006866489999977998
No 4
>d1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1mhi.1 d1jca.1 d1hls.1 d1efea_ d1m5a.1 d1izb.1 d1b9e.1 d1j73.1 d1hit.1 d1qiz.1 d1hiq.1 d1cph.1 d1zeh.1 d1jca.2 d1tym.2 d1lph.1 d1jco.1 d2ins.1 d1kmf.1 d1vkt.1 d1g7a.2 d6insf_ d1t1k.1 d1mhj.1 d1zeia_ d1t1p.1 d1k3m.1 d1t1q.1 d1g7a.4 d1ben.2 d1lkq.1 d1a7f.1 d1sjt.1 d1qj0.1 d1sjua_ d1os4.4 d1htv.1 d1hui.1 d1iog.1 d1ioh.1 d1bzv.1 d1his.1 d1pid.1 d1sdb.1 d1dei.1 d1ho0a_ d1tgra_ d1b9ga_ d1bom.1
Probab=22.99 E-value=19 Score=15.09 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999888876307874223
Q T0525 48 ASRLAELLNESPGPRPWYP 66 (215)
Q Consensus 48 G~~~~p~Ls~~~g~e~~y~ 66 (215)
|.+++..|.-..|+..||.
T Consensus 8 Gs~LVdaL~~vCg~rGf~~ 26 (52)
T d1mso.1 8 GSHLVEALYLVCGERGFFY 26 (52)
T ss_dssp THHHHHHHHHHHGGGCEEE
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 1789999999734578312
No 5
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.66 E-value=31 Score=13.82 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCCCCCCC
Q ss_conf 99998888763078742236
Q T0525 48 ASRLAELLNESPGPRPWYPH 67 (215)
Q Consensus 48 G~~~~p~Ls~~~g~e~~y~H 67 (215)
|.+++..|.-..|+..||.-
T Consensus 5 Gs~LVdaL~~VCg~rGfy~~ 24 (58)
T d2v5pc1 5 GGELVDTLQFVCGDRGFYFS 24 (58)
T ss_dssp THHHHHHHHHHSTTSCBCCC
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 39999999999767874326
No 6
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=16.71 E-value=34 Score=13.54 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 886899999998405799999999988887630
Q T0525 27 ADFSGRMLRIRGDIRPALLRLASRLAELLNESP 59 (215)
Q Consensus 27 ~gLd~RM~aIr~~I~PKf~~lG~~~~p~Ls~~~ 59 (215)
+.|...++.+++++.|.++.+-+.+.|++.+.-
T Consensus 70 ~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~ 102 (144)
T d1gs9a_ 70 ARLSKELQAAQARLGADMEDVRGRLVQYRGEVQ 102 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888865999999998789999999998899999
No 7
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.89 E-value=41 Score=13.08 Aligned_cols=14 Identities=7% Similarity=-0.194 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999989
Q T0525 193 SLAGIVKTIRTFDL 206 (215)
Q Consensus 193 ~l~~i~~tf~~LlP 206 (215)
|=+-+....+.++|
T Consensus 97 le~rl~~~~e~~~~ 110 (118)
T d2dm9a1 97 FEARMERFEGEIRS 110 (118)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999998499
No 8
>d1iega_ b.57.1.1 (A:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]} SCOP: d1iegb_ d1iefa_ d1iefb_ d1njtb_ d1njta_ d1ieda_ d1id4a_ d1njtc_ d1iecb_ d1iedb_ d1id4b_ d1jq7a_ d1ieca_ d1laya_ d2wpob_ d2wpoa_ d1nkkb_ d1nkkc_ d1nkka_ d1wpoa_ d1wpob_ d1cmvb_ d1cmva_ d1jq6a_ d1fl1a_ d1o6ea_ d1at3a_
Probab=13.79 E-value=15 Score=15.83 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=20.0
Q ss_pred HCCHHHHHHHHHHHHHHHHH--------------CCCCCCCCCCHHHC
Q ss_conf 40579999999998888763--------------07874223622006
Q T0525 39 DIRPALLRLASRLAELLNES--------------PGPRPWYPHVASHM 72 (215)
Q Consensus 39 ~I~PKf~~lG~~~~p~Ls~~--------------~g~e~~y~HVAKHa 72 (215)
.=+|.++-|-.++ |.||=. .++++||.|||=-+
T Consensus 108 p~e~~Le~Ls~~l-PslSLSS~r~~~~~~~~~~~~~~~~~F~HVaLC~ 154 (248)
T d1iega_ 108 QPDKVVEFLSGSY-AGLSLASRRCDDVEQATSLSGSETTPFKAVALCS 154 (248)
T ss_dssp CCCHHHHHHHHHC-CEEEEC-------------------CCCCEEEES
T ss_pred CCCCEEEEHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 8564654210220-2554331156766533456778876312244342
No 9
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=13.10 E-value=43 Score=12.94 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 3688689999999840579999
Q T0525 25 DIADFSGRMLRIRGDIRPALLR 46 (215)
Q Consensus 25 ~i~gLd~RM~aIr~~I~PKf~~ 46 (215)
+.+.+.+|-+.+-++|||.++.
T Consensus 4 ~~~~l~~~I~~vLe~IRP~l~~ 25 (88)
T d1xhja_ 4 ENPTMFDQVAEVIERLRPFLLR 25 (88)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7588999999999986379985
No 10
>d1iega_ b.57.1.1 (A:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
Probab=12.72 E-value=16 Score=15.53 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHH--------------CCCCCCCCCCHHHC
Q ss_conf 0579999999998888763--------------07874223622006
Q T0525 40 IRPALLRLASRLAELLNES--------------PGPRPWYPHVASHM 72 (215)
Q Consensus 40 I~PKf~~lG~~~~p~Ls~~--------------~g~e~~y~HVAKHa 72 (215)
=+|.++-|-.++ |.||=. +++++||.|||=-+
T Consensus 109 ~e~~le~Ls~~l-PslSLSSrr~~~~~~~~~~~~~~~~~F~HVaLC~ 154 (248)
T d1iega_ 109 PDKVVEFLSGSY-AGLSLASRRCDDVEQATSLSGSETTPFKAVALCS 154 (248)
T ss_dssp CCHHHHHHHHHC-CEEEEC-------------------CCCCEEEES
T ss_pred CCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 885744100367-6331003577766544457898887300023300
Done!