Query         T0526 NP_417039.1, Escherichia coli k12, 290 residues
Match_columns 290
No_of_seqs    130 out of 2009
Neff          9.3 
Searched_HMMs 22458
Date          Fri May 21 18:05:31 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0526.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0526.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3k25_A SLR1438 protein; struct 100.0       0       0  325.0  29.5  261    1-289    12-288 (289)
  2 3dcd_A Galactose mutarotase re 100.0       0       0  323.7  30.1  270    3-289     2-293 (307)
  3 3imh_A Galactose-1-epimerase;  100.0 1.4E-45       0  304.6  27.9  278    2-289    19-331 (338)
  4 1yga_A Hypothetical 37.9 kDa p 100.0 1.4E-45       0  302.3  28.7  285    1-288    10-341 (342)
  5 1z45_A GAL10 bifunctional prot 100.0 1.1E-44       0  297.8  31.1  282    1-287   373-698 (699)
  6 1nsx_A Galactose mutarotase; e 100.0 2.7E-44       0  295.4  28.9  279    2-289    13-338 (347)
  7 1lur_A Aldose 1-epimerase; vit 100.0 5.6E-44       0  293.3  30.4  281    3-290    14-338 (339)
  8 2cir_A Hexose-6-phosphate muta 100.0 4.2E-44       0  294.1  16.9  254    4-289    13-290 (297)
  9 1snz_A Aldose 1-epimerase; mut 100.0 1.2E-41       0  278.8  27.0  281    2-288    22-342 (344)
 10 2hta_A Putative enzyme related 100.0 5.1E-41 2.8E-45  274.7  21.4  247    1-289    41-308 (309)
 11 1jov_A HI1317; hypothetical pr 100.0 3.1E-38 1.4E-42  257.2  21.9  237    1-286    21-269 (270)
 12 3bs6_A Inner membrane protein   97.0   0.016   7E-07   32.7  13.8  126    2-145     4-137 (280)
 13 3blc_A Inner membrane protein   96.0   0.062 2.8E-06   28.9  16.1  125    3-145    36-168 (330)
 14 3mi6_A Alpha-galactosidase; NE  81.9     1.9 8.3E-05   19.6  15.0   58   98-155   129-188 (745)
 15 1ejx_B Urease beta subunit; al  81.2       2 8.8E-05   19.5   6.4   31  119-151    12-42  (101)
 16 4ubp_B Protein (urease (chain   77.3     2.6 0.00012   18.7   6.1   30  120-151    19-48  (126)
 17 1yew_A Particulate methane mon  72.4     3.5 0.00015   17.9   4.8   26  117-142   256-281 (382)
 18 1e9y_A Urease alpha subunit; h  67.8     4.3 0.00019   17.3   5.0   31  119-151   117-147 (238)
 19 2x41_A Beta-glucosidase; hydro  64.5       5 0.00022   16.9   3.6   19  272-290   661-679 (721)
 20 3isy_A Bsupi, intracellular pr  63.6     5.2 0.00023   16.8   6.0   34  113-146     6-39  (120)
 21 2cqs_A Cellobiose phosphorylas  46.0      10 0.00045   15.0  11.8   49   95-147   118-168 (842)
 22 3chx_A PMOB; membrane protein,  39.4     3.6 0.00016   17.8  -0.6   24  119-142   264-287 (392)
 23 1v7w_A Chitobiose phosphorylas  32.1      17 0.00075   13.6  11.8   48   97-148   103-152 (807)
 24 1nkg_A Rhamnogalacturonase B;   31.1      17 0.00077   13.5   4.6   34    3-36     10-46  (508)
 25 2kl8_A OR15; structural genomi  26.2      21 0.00094   13.0   3.0   16  116-131    31-46  (85)
 26 1k1x_A 4-alpha-glucanotransfer  25.3      22 0.00098   12.9  16.4   58   87-145   514-574 (659)
 27 1yyc_A LEA protein, putative l  20.2      28  0.0012   12.3   1.5   26  119-144    56-81  (174)

No 1  
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=100.00  E-value=0  Score=324.99  Aligned_cols=261  Identities=18%  Similarity=0.323  Sum_probs=208.3

Q ss_pred             CEEEEEECC--CEEEEEEC-CCCEEEEEEECCEEEEECCCCCCH----HHCCCCCEEEEEEEECCCCEEEECCEEEEECC
Q ss_conf             938998769--84999917-896999999799608935898002----10566738854433302986887997999554
Q T0526             1 MTIYTLSHG--SLKLDVSD-QGGVIEGFWRDTTPLLRPGKKSGV----ATDASCFPLVPFANRVSGNRFVWQGREYQLQP   73 (290)
Q Consensus         1 m~~~~L~~~--~~~~~i~~-~Ga~i~s~~~~g~~~l~~~~~~~~----~~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~   73 (290)
                      |+ +.|+|+  .++++|.| +||.|+||+.+|+|+||..+....    ..++|+|+||||+||+++|+|.++|+.|+++ 
T Consensus        12 ~t-~~l~~~~~~~~v~v~P~~Ga~i~s~~~~g~e~L~~~~~~~~~~~~~~~gG~p~lfP~~gRi~~g~~~~~g~~~~l~-   89 (289)
T 3k25_A           12 LT-YHLEDDQSLARLSLVPGRGGLVTEWTVQGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLK-   89 (289)
T ss_dssp             CE-EEEEETTTTEEEEEEGGGTSEEEEEEETTEECBCBCTTGGGSTTSCCCBSBCEEBSCSSCCGGGEEEETTEEEECC-
T ss_pred             EE-EEEECCCCCEEEEECCCCCCEEEEEEECCEEEECCCCHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEECC-
T ss_conf             89-9999289828999872379899999989999985593786267775378881888784805899484899796257-


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCC---EEEEEECC-----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEE
Q ss_conf             47886677877433534799981698---89999754-----78885659999999849906999999835895069862
Q T0526            74 NVEWDAHYLHGDGWLGEWQCVSHSDD---SLCLVYEH-----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGT  145 (290)
Q Consensus        74 n~~~~~~~~HG~ar~~~w~v~~~~~~---~~~l~~~~-----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~  145 (290)
                              +||++|..+|++.+...+   .+++.+..     ..|||+|+++++|+|.+++|+++++++|+|+++|||++
T Consensus        90 --------~HG~~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~~~~~v~N~~~~~~p~~~  161 (289)
T 3k25_A           90 --------QHGFARDLPWEVIGQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRMPFSL  161 (289)
T ss_dssp             --------TTBSGGGSCCEEEEEECSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEETTEEEEEEEEEECSSSCEEECC
T ss_pred             --------CCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEE
T ss_conf             --------785515775167786317882689999647230024998569999999927726999999827997779997


Q ss_pred             CCCCEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCC-CCEEEEEECCCCCEEEEE
Q ss_conf             3541482189866999146146865665567632678862325476460611113000689-954999978999589999
Q T0526           146 GWHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGW-NGQARIEQPQEGYAIIME  224 (290)
Q Consensus       146 g~HpyF~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~-~~~~~l~~~~~~~~i~i~  224 (290)
                      |+||||++++..++++........+...         .....+.....+....+|+++... +....+.++..+.++.++
T Consensus       162 g~HpyF~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  232 (289)
T 3k25_A          162 GFHPYFFCREKLGITLAIPANDYLDQKT---------GDCHGYDGQLNLTSPELDLAFTQISQPRAHFIDPDRNLKIEVS  232 (289)
T ss_dssp             EECCEEECSCCTTCEEECSCSEEEETTT---------CCEEECCSCCCTTSSEEEEEECCCSSSEEEEEETTTTEEEEEE
T ss_pred             EECCEECCCCCEEEEEEECCCCEECCCC---------CCCCCCCCCEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf             8275472587304899745752022455---------8743557740105654410343068982278816898189999


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf             85999889998089888766567749991056788888788888617978998399999999985
Q T0526           225 TTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEW  289 (290)
Q Consensus       225 ~~~~~~~~~v~~~~~~~~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~~~~i~ve~  289 (290)
                      .+..++++++|++.       .++|||||||+|++||+|..  .++++|+|||+++..++|+|.+
T Consensus       233 ~~~~~~~~~vwtp~-------~~~~vciEP~t~~~da~n~~--~~l~~L~PGe~~~~~~~~~v~~  288 (289)
T 3k25_A          233 FSELYQTLVLWTVA-------GKDYLCLEPWSGPRNALNSG--EQLAWVEPYSSRSAWVNFQVST  288 (289)
T ss_dssp             ECTTCCEEEEEEES-------SSCEEEEEEESSCTTHHHHC--TTCEEECTTEEEEEEEEEEEEC
T ss_pred             ECCCCCEEEEECCC-------CCCEEEEECCCCCCCCCCCC--CCCEEECCCCEEEEEEEEEEEE
T ss_conf             88999879992789-------99899993748899855489--9988989999199999999997


No 2  
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=100.00  E-value=0  Score=323.67  Aligned_cols=270  Identities=17%  Similarity=0.289  Sum_probs=208.6

Q ss_pred             EEEEECCCEEEEEECCCCEEEEEEE--CCEEEEECCCCCCHHHCCCCCEEEEEEEECCCCEEEECCEEEEECCCCCCCCC
Q ss_conf             8998769849999178969999997--99608935898002105667388544333029868879979995544788667
Q T0526             3 IYTLSHGSLKLDVSDQGGVIEGFWR--DTTPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAH   80 (290)
Q Consensus         3 ~~~L~~~~~~~~i~~~Ga~i~s~~~--~g~~~l~~~~~~~~~~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~~~~~~   80 (290)
                      .+||+|+.++|+|+++||.|+||+.  .|+|+||+.++  .+..++.|+||||+||+++|+|.++|+.|+|+        
T Consensus         2 ~~tleN~~l~v~v~~~Ga~l~s~~~~~~~~e~L~~~~~--~~~~~~~p~l~P~~gRi~~g~~~~~g~~~~l~--------   71 (307)
T 3dcd_A            2 DYTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANP--EIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLG--------   71 (307)
T ss_dssp             EEEEECSSEEEEEETBTTEEEEEEETTTCCBCBCCCCT--TTCCCSSCEEBSCSSCCGGGEEEETTEEEECC--------
T ss_pred             EEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCH--HHHCCCCCEEEEECCCCCCCEEEECCCEEEEC--------
T ss_conf             89999699999997569799999979999688973886--88378996899882641899076779798566--------


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEEECC-----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECCCCEEECCC
Q ss_conf             787743353479998169889999754-----788856599999998499069999998358950698623541482189
Q T0526            81 YLHGDGWLGEWQCVSHSDDSLCLVYEH-----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSP  155 (290)
Q Consensus        81 ~~HG~ar~~~w~v~~~~~~~~~l~~~~-----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g~HpyF~~~~  155 (290)
                       +|||+|.++|++++.++++++|++..     ++|||+|+++++|+|++++|+++++++|.|+++|||++|+||||++++
T Consensus        72 -~HG~~~~~~w~v~~~~~~~~~l~l~~~~~~~~~~P~~~~l~~~~~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~l~~  150 (307)
T 3dcd_A           72 -QHGFARNADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETMIFGVGGHPGFNLPT  150 (307)
T ss_dssp             -TTBSGGGSBCEEEEEETTEEEEEEECCHHHHHHSCCCEEEEEEEEEETTEEEEEEEEEECSSSCEEECEEECCEEECCC
T ss_pred             -CCCCCCCCCEEEEECCCCEEEEEECCCHHHHCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCEEEECCC
T ss_conf             -6799578526999827981799970482462059987699999996256489999999388863788405240585586


Q ss_pred             CCE-----EEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEECCCEECCC---C--CCCCCEEEEEECCCCCEEEEE
Q ss_conf             866-----9991461468656655676-3267886232547646061111300---0--689954999978999589999
Q T0526           156 QTR-----IQAQASGYWLEREQWLAGE-FCEQLPQELDFNQPAPLPRQWVNNG---F--AGWNGQARIEQPQEGYAIIME  224 (290)
Q Consensus       156 ~~~-----l~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~d~~---~--~~~~~~~~l~~~~~~~~i~i~  224 (290)
                      ...     +.+............++++ .........+......+.+..+++.   +  .+.++.+.+..+..+.++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  230 (307)
T 3dcd_A          151 DHGENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNKFHVNVW  230 (307)
T ss_dssp             TTSCCGGGEEEEEESCCCEEECCEETTEECGGGCEEECTTSCEECCSGGGTTSCEEEECCSSCEEEEEEETTSSCEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf             55720003899814565212113687730356673056676044145432565499944898618999968998299998


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC----CCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf             85999889998089888766567749991056788888788----888617978998399999999985
Q T0526           225 TTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRP----EGGDLIALAPGESTTSEMSLRVEW  289 (290)
Q Consensus       225 ~~~~~~~~~v~~~~~~~~~~~~~~~vciEP~~~~~da~n~~----~~~~~~~L~PGe~~~~~~~i~ve~  289 (290)
                      . +.++++++|+..+.     .++|||||||+|+|||+|.+    ++.++++|+|||+++.+++|++++
T Consensus       231 ~-~~~p~~~vwt~~~~-----~~~~vcvEP~t~~~da~n~~~~~~~~~g~~~L~pge~~~~~~~it~~~  293 (307)
T 3dcd_A          231 T-RDAPFVGIWSQYPK-----TDNYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMTYHS  293 (307)
T ss_dssp             E-ETCSEEEEECCSSS-----CCSEEEEEEEESCCCBTTCCSBGGGCTTCEEECTTCEEEEEEEEEEEC
T ss_pred             E-CCCCEEEEECCCCC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEC
T ss_conf             4-89997999899999-----998999914478998567732001277988989999999999999986


No 3  
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm}
Probab=100.00  E-value=1.4e-45  Score=304.62  Aligned_cols=278  Identities=15%  Similarity=0.170  Sum_probs=222.6

Q ss_pred             EEEEEECCC-EEEEEECCCCEEEEEEECCEEEEECCCCCCHH---HCCCCCEEEEEEEECCCCEEEECCEEEEECCCCCC
Q ss_conf             389987698-49999178969999997996089358980021---05667388544333029868879979995544788
Q T0526             2 TIYTLSHGS-LKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVA---TDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEW   77 (290)
Q Consensus         2 ~~~~L~~~~-~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~---~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~~~   77 (290)
                      ..|||+|+. ++|+|+++||.|++|+.++++++.+++....+   +.+.+.+|+||+|||++|+|.++|+.|+|++|++.
T Consensus        19 ~~itl~N~~g~~v~i~~~GA~i~~~~~~~~~vvlg~d~~~~y~~~~~~~Ga~~Gp~anRI~~g~f~~~G~~y~L~~Ne~~   98 (338)
T 3imh_A           19 CEITLENDAGMAVKVLNYGATLEKVLLDGENMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGD   98 (338)
T ss_dssp             EEEEEECSSSEEEEEETBTTEEEEEEETTEECBCCCSSGGGGGTSCCCTTCEECSBCSEEGGGEEEETTEEEECCCCBTT
T ss_pred             EEEEEECCCCCEEEEECCCCEEEEEEECCEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEECCEEEECCEEEECCCCCCC
T ss_conf             99999969983999987591999999899128852899899842888468680675884558899889999966688997


Q ss_pred             CCCCCCC---CCCCCEEE---EEEECCCEEEEEECC----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECC
Q ss_conf             6677877---43353479---998169889999754----7888565999999984990699999983589506986235
Q T0526            78 DAHYLHG---DGWLGEWQ---CVSHSDDSLCLVYEH----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGW  147 (290)
Q Consensus        78 ~~~~~HG---~ar~~~w~---v~~~~~~~~~l~~~~----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g~  147 (290)
                      .  ++||   +.+. .|.   +.+.+..+++|++..    .+||++++++++|+|+++. +++++++|.+++++|+++|+
T Consensus        99 ~--~~HGg~g~~~~-~~~~~~~~~~~~~~v~l~~~~~~g~~GyPg~~~~~vtY~L~~~~-~l~i~~~~~~~~~tp~~l~~  174 (338)
T 3imh_A           99 N--HIHGGIGTDMH-VWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNEN-NLHYLLEAVSDKLTIFNPVN  174 (338)
T ss_dssp             B--EETTSSCGGGS-BCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTS-EEEEEEEEEESSSEECBCEE
T ss_pred             C--CCCCCCCCCCC-CEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEEEEEECCC-EEEEEEEEECCCCCCEECCC
T ss_conf             6--65898556875-05788871477648999997488678998789999999991388-59999997147644102254


Q ss_pred             CCEEECCC---CCEEEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEECCC------------EECCCCCCCCCEEE
Q ss_conf             41482189---8669991461468656655676-32678862325476460611------------11300068995499
Q T0526           148 HPYFPLSP---QTRIQAQASGYWLEREQWLAGE-FCEQLPQELDFNQPAPLPRQ------------WVNNGFAGWNGQAR  211 (290)
Q Consensus       148 HpyF~~~~---~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~------------~~d~~~~~~~~~~~  211 (290)
                      ||||++++   +++|++++..++..++..+|++ ...+.++.+||+.++.+++.            .+|++|........
T Consensus       175 HpYFnL~~~~~d~~L~i~a~~~l~~D~~~iPtG~~~~~~~t~~DFr~~~~i~~~~~~~~~~~~~~~G~D~~fvl~~~~~~  254 (338)
T 3imh_A          175 HTYFNLGERAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHPFILNGNNPA  254 (338)
T ss_dssp             CCEECTTSCGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHHHTSCEEEEEECSCSCS
T ss_pred             CCEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCEECCCCCCE
T ss_conf             47898887640015653356599847545657871136797331448622132231430111125688742674799748


Q ss_pred             EEECCCCCEEEEEECCCCCEEEEEECCCCCC-----CCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEE
Q ss_conf             9978999589999859998899980898887-----66567749991056788888788888617978998399999999
Q T0526           212 IEQPQEGYAIIMETTPPAPCYFIFVSDPAFD-----KGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLR  286 (290)
Q Consensus       212 l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~~-----~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~~~~i~  286 (290)
                      ...+.++++++|+++.  |++++|+++....     ....+..|||||| ++|||+|.  ++ .++|+|||+++..++++
T Consensus       255 a~l~~~g~~l~v~td~--p~~qvYT~~~l~~~~~~~~~~~~~giclEpq-~~Pda~N~--~~-~ivL~pge~y~~~t~y~  328 (338)
T 3imh_A          255 ALLSSNKHRLIVKTNA--PALVLYAGNHFNHTGIVNNIGQYDGITFEAQ-CPPAEGND--LG-QITLLPFEKFKRTVDWK  328 (338)
T ss_dssp             EEEECSSEEEEEEESS--SEEEEECCTTCCSBTTBTTCCTTSCEECEEE-SCCCSSSC--CG-GGEECTTCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCC--CC-CEEECCCCEEEEEEEEE
T ss_conf             9996588289999789--9899988887787666788897078999443-79998665--89-81898999998999999


Q ss_pred             EEE
Q ss_conf             985
Q T0526           287 VEW  289 (290)
Q Consensus       287 ve~  289 (290)
                      +|+
T Consensus       329 F~~  331 (338)
T 3imh_A          329 FEE  331 (338)
T ss_dssp             EEE
T ss_pred             EEC
T ss_conf             807


No 4  
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=100.00  E-value=1.4e-45  Score=302.27  Aligned_cols=285  Identities=14%  Similarity=0.135  Sum_probs=226.8

Q ss_pred             CEEEEEECC-CEEEEEECCCCEEEEEEECCEEEEECCCCCCHH---HCCCCCEEEEEEEECCCCEEEECCEEEEECCCCC
Q ss_conf             938998769-849999178969999997996089358980021---0566738854433302986887997999554478
Q T0526             1 MTIYTLSHG-SLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVA---TDASCFPLVPFANRVSGNRFVWQGREYQLQPNVE   76 (290)
Q Consensus         1 m~~~~L~~~-~~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~---~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~~   76 (290)
                      +.+|||+|+ +++|+|.++||.|+||+.++++++++++....+   +.+.+++|+||+|||++|+|.++|+.|+|++|++
T Consensus        10 ~~~itl~n~~~~~~~i~~~GA~i~~l~~~~~~vvlg~~~~~~Y~~~~~~~Ga~iGr~ANRI~~g~f~~~G~~y~L~~Ne~   89 (342)
T 1yga_A           10 YGVITIGDEKKFQATIAPLGATLVDLKVNGQSVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNC   89 (342)
T ss_dssp             TCCEEEEETTTEEEEEETBTTEEEEEEETTEECBCCCSSGGGGTTCSSCTTCEECSBCSEEGGGEEEETTEEEECCCCBT
T ss_pred             EEEEEEECCCCEEEEEECCCEEEEEEEECCEEEEECCCCHHHHHCCCCCCCCEECCCCCEEECCEEEECCEEEECCCCCC
T ss_conf             99999978996699998779099999999958894799989981189816528445557476889999999999267889


Q ss_pred             CCCCCCCCCCC-CCEEEE---EEECCCEEEEEEC---------CCCCCCCEEEEEEEEEEC--CEEEEEEEEEECCCCCE
Q ss_conf             86677877433-534799---9816988999975---------478885659999999849--90699999983589506
Q T0526            77 WDAHYLHGDGW-LGEWQC---VSHSDDSLCLVYE---------HRSGVYHYRVSQAFHLTA--DTLTVTLSVTNQGAETL  141 (290)
Q Consensus        77 ~~~~~~HG~ar-~~~w~v---~~~~~~~~~l~~~---------~~~~P~~~~l~~~~~L~~--~~L~v~~~v~N~g~~~~  141 (290)
                      +..++.|+..+ .+.|++   .+.+.+.+.+++.         .++||++++++++|+|.+  .+|+++++++|.+++++
T Consensus        90 ~~~lhgg~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~GfPg~~~~~v~y~L~~~~~~L~i~~~~~n~~~~~t  169 (342)
T 1yga_A           90 GNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDAT  169 (342)
T ss_dssp             TBEETTGGGCGGGSBCEECCCEEEETTEEEEEEEEEECSSSSSCCCSSSEEEEEEEEEEETTTTEEEEEEEEEEEESSEE
T ss_pred             CCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf             87344246997726888999642787459999999304678865782168999999999226762378999963668774


Q ss_pred             EEEECCCCEEECCC--------CCEEEECCCEEEEECCC-CCCCC-CCCCCCCCCCCCCCEEECCCE--------ECCCC
Q ss_conf             98623541482189--------86699914614686566-55676-326788623254764606111--------13000
Q T0526           142 PFGTGWHPYFPLSP--------QTRIQAQASGYWLEREQ-WLAGE-FCEQLPQELDFNQPAPLPRQW--------VNNGF  203 (290)
Q Consensus       142 p~~~g~HpyF~~~~--------~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~~~~~~--------~d~~~  203 (290)
                      ||++++||||++++        ++.+++++..++..++. .+|++ ...+..+.+||+.++.+.+..        +|+.|
T Consensus       170 p~nlt~H~YFnL~g~~~~~~i~~~~l~~~a~~~~~~~d~~~~ptg~~~~~~~t~fd~~~~~~~~~~~~~~~~~~~~d~~~  249 (342)
T 1yga_A          170 PINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLHEDTPVFDCTFIIDANK  249 (342)
T ss_dssp             ECBCEECCCBCTTTTTCTTCCTTEEEEESCCEEEEECTTTCCEEEEEEECSCCBTTCSSCEEECSSCCCCEEEEECTTTT
T ss_pred             EEEECCCCEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf             68833644585567665575012589981584898057678874214301476422346410222222110135214886


Q ss_pred             CCC----------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf             689----------9549999789995899998599988999808988876656774999105678888878888861797
Q T0526           204 AGW----------NGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIAL  273 (290)
Q Consensus       204 ~~~----------~~~~~l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L  273 (290)
                      ...          ...+++.++.+|++++|.++.  |++++|+++...+...++.+|||||| .+|||+|++++.++++|
T Consensus       250 ~~~~~~~~~~~~~~~~a~l~~~~sg~~l~v~t~~--p~~qvYT~n~l~~~~~~~~giclEpq-~~pda~N~~~~~~~i~L  326 (342)
T 1yga_A          250 DLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTE--PTVHLYTGDNLCGKFVPRSGFAVQQG-RYVDAINRDEWRGCVLL  326 (342)
T ss_dssp             TCCSSBCTTTSCCEEEEEEECTTTCCEEEEEESS--SEEEEECCTTCCTTSCTTSCBEEEEE-SCSSGGGCHHHHGGGEE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCEEE
T ss_conf             6431336676763589999948998099999289--98999828878997689779999799-89897667479998588


Q ss_pred             CCCCEEEEEEEEEEE
Q ss_conf             899839999999998
Q T0526           274 APGESTTSEMSLRVE  288 (290)
Q Consensus       274 ~PGe~~~~~~~i~ve  288 (290)
                      +|||+++..++++++
T Consensus       327 ~pge~y~~~t~y~F~  341 (342)
T 1yga_A          327 KRGEVYTSKTQYKFD  341 (342)
T ss_dssp             ETTCCEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
T ss_conf             998989889999997


No 5  
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=100.00  E-value=1.1e-44  Score=297.80  Aligned_cols=282  Identities=16%  Similarity=0.155  Sum_probs=236.2

Q ss_pred             CEEEEEECC-CEEEEEECCCCEEEEEEECCEEEEECCCCCCHHH----CCCCCEEEEEEEECCCCEEEECCEEEEECCCC
Q ss_conf             938998769-8499991789699999979960893589800210----56673885443330298688799799955447
Q T0526             1 MTIYTLSHG-SLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVAT----DASCFPLVPFANRVSGNRFVWQGREYQLQPNV   75 (290)
Q Consensus         1 m~~~~L~~~-~~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~~----~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~   75 (290)
                      |.+|||+|+ +++|.|.++||.|++++.+|++++.+++....|.    .+.|++++|++|||++|+|.++|+.|+|++|+
T Consensus       373 ~~~~t~~n~~~~~v~~~~~Ga~i~~~~~~~~~vvlg~~~~~~y~~~~~~y~Ga~iGr~anRI~~g~~~~~g~~y~l~~N~  452 (699)
T 1z45_A          373 ARFVTIGAGTRFQATFANLGASIVDLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNN  452 (699)
T ss_dssp             SEEEEESTTSSEEEEEESBTTCEEEEEETTEECBCCCSSHHHHTCTTCCCTTCEECSBCSEEGGGEEEETTEEEECCCCB
T ss_pred             EEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEECCCCHHHHCCCCCCEECCCCCCCCCEEECCEEEECCEEEEECCCC
T ss_conf             27999944873699998168599996719978883799989970789974186755766868688999999999927899


Q ss_pred             CCCCCCCCCCC---CCCEEE---EEEECCCEEEEEEC------CCCCCCCEEEEEEEEEE--CCEEEEEEEEEECCCCCE
Q ss_conf             88667787743---353479---99816988999975------47888565999999984--990699999983589506
Q T0526            76 EWDAHYLHGDG---WLGEWQ---CVSHSDDSLCLVYE------HRSGVYHYRVSQAFHLT--ADTLTVTLSVTNQGAETL  141 (290)
Q Consensus        76 ~~~~~~~HG~a---r~~~w~---v~~~~~~~~~l~~~------~~~~P~~~~l~~~~~L~--~~~L~v~~~v~N~g~~~~  141 (290)
                      +.  +++||..   ..+.|.   +.+.+.+.+++++.      ..+||++++++++|+|+  ++.|++.++.++++++++
T Consensus       453 ~~--~~lHGg~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~G~PG~l~~~v~y~l~~~~~~l~i~~~~~~~~d~~t  530 (699)
T 1z45_A          453 GV--NANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEAT  530 (699)
T ss_dssp             TT--BEETTGGGCGGGSBCEEEEEEEEETTEEEEEEEEEECGGGSSSSSEEEEEEEEEEETTTTEEEEEEEEEEEESSEE
T ss_pred             CC--CCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCE
T ss_conf             99--8778998888854886777750788669999998889888998807899999999669991799999970577523


Q ss_pred             EEEECCCCEEECCC-------CCEEEECCCEEEEECCCCCCCCC-CCCCCCCCCCCCCEEECC--CEECCCCCCCC----
Q ss_conf             98623541482189-------86699914614686566556763-267886232547646061--11130006899----
Q T0526           142 PFGTGWHPYFPLSP-------QTRIQAQASGYWLEREQWLAGEF-CEQLPQELDFNQPAPLPR--QWVNNGFAGWN----  207 (290)
Q Consensus       142 p~~~g~HpyF~~~~-------~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~--~~~d~~~~~~~----  207 (290)
                      |+++++|+||++++       ++.+++++..+...++..+|++. .++.++.+||+.++.++.  ..+|++|....    
T Consensus       531 ~~n~tnH~YfNL~g~~~~~i~~h~l~i~a~~~~~~d~~~iPtG~~~~v~~t~~d~~~~~~i~~~~~~~d~~~~~~~~~~~  610 (699)
T 1z45_A          531 PINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNPQFDCCFVVDENAKP  610 (699)
T ss_dssp             ECBCEECCEECTTTTSCSSSTTEEEEESCCEEEEECTTSCEEEEEEECSCCBTTSSSCEEECSSCCCCEEEEESCSSCCC
T ss_pred             EEECCCCCEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCEEEECCCCCC
T ss_conf             65514644172378877542442998467849740787775887040679998788860357668898722886798764


Q ss_pred             -----------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             -----------549999789995899998599988999808988876656774999105678888878888861797899
Q T0526           208 -----------GQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG  276 (290)
Q Consensus       208 -----------~~~~l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PG  276 (290)
                                 ..+++..+.+|+.+++.++.  |.+++|+++........+..||+||+ .+|||+|++++++.++|+||
T Consensus       611 ~~~~~~~~~~~~~~~~~~~~sg~~l~v~t~~--p~~~~yt~n~~~~~~~~~~g~~lE~q-~~pda~n~~~f~~~i~l~~g  687 (699)
T 1z45_A          611 SQINTLNNELTLIVKAFHPDSNITLEVLSTE--PTYQFYTGDFLSAGYEARQGFAIEPG-RYIDAINQENWKDCVTLKNG  687 (699)
T ss_dssp             CCSBCTTSCCEEEEEEEETTTTEEEEEEESS--SEEEEECCTTCCTTCCTTSCEEEEEE-SCSSGGGCTTTGGGGEEETT
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCEECCCC
T ss_conf             3334667872499999908989889999689--76999689988988799888998268-99886678689986553995


Q ss_pred             CEEEEEEEEEE
Q ss_conf             83999999999
Q T0526           277 ESTTSEMSLRV  287 (290)
Q Consensus       277 e~~~~~~~i~v  287 (290)
                      |++...+.+++
T Consensus       688 ~~y~~~t~y~F  698 (699)
T 1z45_A          688 ETYGSKIVYRF  698 (699)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
T ss_conf             98988999997


No 6  
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=100.00  E-value=2.7e-44  Score=295.37  Aligned_cols=279  Identities=18%  Similarity=0.203  Sum_probs=220.0

Q ss_pred             EEEEEECCC-EEEEEECCCCEEEEEEECCEEEEECCCCCCHH---HCCCCCEEEEEEEECCCCEEEECCEEEEECCCCCC
Q ss_conf             389987698-49999178969999997996089358980021---05667388544333029868879979995544788
Q T0526             2 TIYTLSHGS-LKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVA---TDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEW   77 (290)
Q Consensus         2 ~~~~L~~~~-~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~---~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~~~   77 (290)
                      .+|||+|+. ++|+|+++||.|++|+.++++++.+++..+.+   ..+.+.+++||+|||++|+|.++|+.|+|++|++.
T Consensus        13 ~~~tL~N~~g~~v~i~~~GA~i~~~~~~~~~vvlg~~~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G~~y~L~~Ne~~   92 (347)
T 1nsx_A           13 DLISLTNKAGVTISFTNLGARIVDWQKDGKHLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGP   92 (347)
T ss_dssp             EEEEEECTTSCEEEEETBTTEEEEEEETTEESBCCCSSHHHHHHTCSCTTCEECSBCSEEGGGEEEETTEEEECCCCBTT
T ss_pred             EEEEEECCCCCEEEEECCCEEEEEECCCCCEEEECCCCHHHHHHCCCCCCCEECCCCCCCCCCEEEECCEEEEECCCCCC
T ss_conf             69999959983999979886999703699758966999899831788527571451671138804089989991478898


Q ss_pred             CCCCCCCCC---CCCEEEEEEE---CCCEEEEEECC----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECC
Q ss_conf             667787743---3534799981---69889999754----7888565999999984990699999983589506986235
Q T0526            78 DAHYLHGDG---WLGEWQCVSH---SDDSLCLVYEH----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGW  147 (290)
Q Consensus        78 ~~~~~HG~a---r~~~w~v~~~---~~~~~~l~~~~----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g~  147 (290)
                        +++||..   ..+.|++...   ++.+|+|++..    .+||++++++++|+|+++. ++.++++|.+++++|+++++
T Consensus        93 --~~lHGG~~g~~~~~w~~~~~~~~~~~~v~~~~~~~dg~~GyPg~~~~~vtY~L~~~~-~l~i~~~a~s~~~tp~nlt~  169 (347)
T 1nsx_A           93 --QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDN-KWKIHYEAISDKDTVFNPTG  169 (347)
T ss_dssp             --BEETTSTTCGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTS-EEEEEEEEEESSCEECBCEE
T ss_pred             --CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCC-EEEEEEEEECCCCEEEECCC
T ss_conf             --755788655576002467652788438999999689878875789999999964598-48999997437754764065


Q ss_pred             CCEEECCC-------CCEEEECCCEEEEE-CCCCCCCC-CCCCCCCCCCCCCCEEECCC------------EECCCCCCC
Q ss_conf             41482189-------86699914614686-56655676-32678862325476460611------------113000689
Q T0526           148 HPYFPLSP-------QTRIQAQASGYWLE-REQWLAGE-FCEQLPQELDFNQPAPLPRQ------------WVNNGFAGW  206 (290)
Q Consensus       148 HpyF~~~~-------~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~d~~~~~~~~~~------------~~d~~~~~~  206 (290)
                      ||||++++       +++|++++..++.. ++..+|++ ..++.++.+||+.++.+++.            .+|+||...
T Consensus       170 H~YFnL~g~~~~~i~~h~L~i~a~~~l~~~D~~~iPtG~~~~v~~t~~Dfr~~~~i~~~~~~~~~~~~~~~G~D~~f~l~  249 (347)
T 1nsx_A          170 NVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD  249 (347)
T ss_dssp             CCEECTTSSTTSCGGGSEEEECEEEECCBCSTTCCBCSCCEECTTSTTCCSSCEEHHHHHHCCCHHHHHHTSCEEEEEES
T ss_pred             CCCEECCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCEEEC
T ss_conf             25064477556752007999803758996278877678255477998656677284542412024411357888634745


Q ss_pred             C-----CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-------CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEC
Q ss_conf             9-----5499997899958999985999889998089888-------766567749991056788888788888617978
Q T0526           207 N-----GQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAF-------DKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALA  274 (290)
Q Consensus       207 ~-----~~~~l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~-------~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~  274 (290)
                      .     ..+++..  ++++++|.++.  |.+++|+++...       .....+..|||||| ++|||+|.++++. ++|+
T Consensus       250 ~~~~~~~~~~l~~--~~~~l~v~T~~--p~~qvYT~n~l~~~~~~~~~~~~~~~giclEpq-~~Pda~N~~~f~~-i~L~  323 (347)
T 1nsx_A          250 QLGLDKEQARLTL--DDTSISVFTDQ--PSIVIFTANFGDLGTLYHEKKQVHHGGITFECQ-VSPGSEQIPELGD-ISLK  323 (347)
T ss_dssp             SCBTTSCCEEEEE--TTEEEEEEESS--SEEEEECCCCTTCCCEETTEECCTTCCEECEEE-SCTTTTTCGGGCC-CEEC
T ss_pred             CCCCCCCEEEEEE--CCCEEEEEECC--CEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCC-EEEC
T ss_conf             6778730389974--89608999389--979999077677655678876787789999557-8998657778998-0899


Q ss_pred             CCCEEEEEEEEEEEE
Q ss_conf             998399999999985
Q T0526           275 PGESTTSEMSLRVEW  289 (290)
Q Consensus       275 PGe~~~~~~~i~ve~  289 (290)
                      |||++...+.+++++
T Consensus       324 pge~y~~~t~Y~f~~  338 (347)
T 1nsx_A          324 AGEKYQATTIYSLHT  338 (347)
T ss_dssp             TTCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
T ss_conf             999998899999999


No 7  
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4
Probab=100.00  E-value=5.6e-44  Score=293.31  Aligned_cols=281  Identities=14%  Similarity=0.194  Sum_probs=229.4

Q ss_pred             EEEEECCC-EEEEEECCCCEEEEEEE---CC--EEEEECCCCCCHH---HCCCCCEEEEEEEECCCCEEEECCEEEEECC
Q ss_conf             89987698-49999178969999997---99--6089358980021---0566738854433302986887997999554
Q T0526             3 IYTLSHGS-LKLDVSDQGGVIEGFWR---DT--TPLLRPGKKSGVA---TDASCFPLVPFANRVSGNRFVWQGREYQLQP   73 (290)
Q Consensus         3 ~~~L~~~~-~~~~i~~~Ga~i~s~~~---~g--~~~l~~~~~~~~~---~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~   73 (290)
                      +|+|+|+. ++|+|.++||.|++|+.   +|  ++++++++....+   +.+.+.+++||+|||++|+|.++|+.|+|++
T Consensus        14 ~i~l~N~~g~~v~i~~~GA~i~~~~vpd~~G~~~~vvlg~~~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G~~y~L~~   93 (339)
T 1lur_A           14 FIEIANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTP   93 (339)
T ss_dssp             CEEEECSSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHHCSSCTTCEECSBCSEEGGGEEEETTEEEECCC
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHCCCCCCCEECCCCCEEECCEEEECCEEEEECC
T ss_conf             69999699959999896929999998888898814288899989995388860658877368578988989999999148


Q ss_pred             CCCCCCCCCCCCC---CCCEEEEEEECCCEEEEEECC----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEEC
Q ss_conf             4788667787743---353479998169889999754----788856599999998499069999998358950698623
Q T0526            74 NVEWDAHYLHGDG---WLGEWQCVSHSDDSLCLVYEH----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTG  146 (290)
Q Consensus        74 n~~~~~~~~HG~a---r~~~w~v~~~~~~~~~l~~~~----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g  146 (290)
                      |++.  +.+||..   +.+.|+++++++++++|++..    .+||+++.++++|+|+++. .+.+++++.+++++|++++
T Consensus        94 Ne~~--n~lHGg~~g~~~~~W~v~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~-~l~i~~~a~~d~~tp~nlt  170 (339)
T 1lur_A           94 NNGP--HYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRN-QLIIEHHATCDTPGLLALT  170 (339)
T ss_dssp             SBTT--BEETTCTTSGGGSBCEEEEEETTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTS-EEEEEEEEECSSCEECBCE
T ss_pred             CCCC--CCCCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCC-EEEEEEEEECCCCCEEEEC
T ss_conf             9998--555888776313521147705872299998178767877448999999965698-6999999755987057851


Q ss_pred             CCCEEECC-----CCCEEEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEECCCEECC--------CCCCC------
Q ss_conf             54148218-----98669991461468656655676-326788623254764606111130--------00689------
Q T0526           147 WHPYFPLS-----PQTRIQAQASGYWLEREQWLAGE-FCEQLPQELDFNQPAPLPRQWVNN--------GFAGW------  206 (290)
Q Consensus       147 ~HpyF~~~-----~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~d~--------~~~~~------  206 (290)
                      +||||+++     .++.+++++..++..++..+|++ ...+.++.+||+.++.+++...|.        +|...      
T Consensus       171 ~H~YFNL~g~~~i~~h~L~i~a~~~l~~D~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~d~~~~~~~d~~~~~~~~~~~~  250 (339)
T 1lur_A          171 NHAYWNLDGSDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKKTPPS  250 (339)
T ss_dssp             ECCEECSSCCSCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTCEETTCSCCCSSCCCCCEEEEEECCCCC--
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCC
T ss_conf             54413257887767739998668588758555206754634688765558630575322434036027867984378987


Q ss_pred             --CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC------CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCE
Q ss_conf             --95499997899958999985999889998089888------7665677499910567888887888886179789983
Q T0526           207 --NGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAF------DKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGES  278 (290)
Q Consensus       207 --~~~~~l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~------~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~  278 (290)
                        ...+++.++.+|+++++..+.  |++++|+++...      ..+..+..|||||| .+|||+|.+++.. ++|+|||.
T Consensus       251 ~~~~~~~l~~~~sg~~l~v~t~~--p~~qvYT~n~l~~~~~~g~~~~~~~gi~lEpq-~~PdA~N~~~f~~-~iL~pge~  326 (339)
T 1lur_A          251 TPSTYLRFWSEKSGIELSITTSY--PVIHLYASKFLDCKGKKGEHYKANKALAIEPQ-FHSAAPNFDHFPD-VSLRPGDH  326 (339)
T ss_dssp             --CCCEEEECTTTCEEEEEEESS--SEEEEECCTTCCEECGGGCEECTTCCEEEEEE-SCTTGGGCTTSCC-CEECTTCC
T ss_pred             CCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCC-EEECCCCE
T ss_conf             75169999639988599996799--88999689877777878879688888999546-9998556778998-08999999


Q ss_pred             EEEEEEEEEEEC
Q ss_conf             999999999859
Q T0526           279 TTSEMSLRVEWL  290 (290)
Q Consensus       279 ~~~~~~i~ve~~  290 (290)
                      ++..+.++++.+
T Consensus       327 y~~~t~Y~Fs~~  338 (339)
T 1lur_A          327 YCQEIVYTFSHV  338 (339)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEECC
T ss_conf             988999998717


No 8  
>2cir_A Hexose-6-phosphate mutarotase; mannose-6-phosphate-1-epimerase, galactose-6-phosphate-1- epimerase, hypothetical protein, isomerase; HET: BG6; 1.6A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=100.00  E-value=4.2e-44  Score=294.12  Aligned_cols=254  Identities=15%  Similarity=0.173  Sum_probs=187.9

Q ss_pred             EEEECCCEEEEEECCCCEEEEEEECCEEEEECCCCCC----HHHCCCCCEEEEEEEECCCCEEEECCEEEEECCCCCCCC
Q ss_conf             9987698499991789699999979960893589800----210566738854433302986887997999554478866
Q T0526             4 YTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSG----VATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDA   79 (290)
Q Consensus         4 ~~L~~~~~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~----~~~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~~~~~   79 (290)
                      ..++|+..+|+|+.+||+|+||+.+|+|+||..+...    ...++|.|+||||+||+.+     +|+.|+|        
T Consensus        13 ~~~~~~~~~a~i~~~Ga~l~s~~~~g~e~L~~s~~a~~~~~~~irGGiPvlfP~~G~~~~-----~g~~~~l--------   79 (297)
T 2cir_A           13 THPADETTSVHILKYGATVYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNST-----DEHLSKL--------   79 (297)
T ss_dssp             EETTEEEEEEEEETBTTEEEEEEETTEECBCBCTTCCCSSSSCCSBSBCEEBSCSSCCSS-----STTGGGS--------
T ss_pred             ECCCCCCEEEEEECCCCEEEEEEECCEEEEECCCHHHCCCCCCCCCCCEEEEEEECCCCC-----CCCCCCC--------
T ss_conf             906999789999878929999998998988438777617999755888398833088988-----9862689--------


Q ss_pred             CCCCCCCCCCEEEEEEECC---CEEEEEECC--------CCCCCCEEEEEEEEEECCEEEEEEEEEECC-CCCEEEEECC
Q ss_conf             7787743353479998169---889999754--------788856599999998499069999998358-9506986235
Q T0526            80 HYLHGDGWLGEWQCVSHSD---DSLCLVYEH--------RSGVYHYRVSQAFHLTADTLTVTLSVTNQG-AETLPFGTGW  147 (290)
Q Consensus        80 ~~~HG~ar~~~w~v~~~~~---~~~~l~~~~--------~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g-~~~~p~~~g~  147 (290)
                       ++|||+|+++|+|+++++   .++++++..        +.|||+|+++++|+|.+++|+++++|+|+| +++|||++|+
T Consensus        80 -p~HGfaR~~~W~v~~~~~~~~~~v~~~l~~~~~~~~~~~~yPf~f~l~~~y~L~~~~L~~~~~v~N~g~~~~mpf~~G~  158 (297)
T 2cir_A           80 -PQHGLARNSTWEFLGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLF  158 (297)
T ss_dssp             -CTTBSGGGSBCEEEEEEEETTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSSEEEEEEEEECCCSSCCEEEEEEE
T ss_pred             -CCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEECCCCCCEEEEEEC
T ss_conf             -8885225643699886058874699999846799779821884179999999889848999999919977422877852


Q ss_pred             CCEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf             41482189866999146146865665567632678862325476460611113000689954999978999589999859
Q T0526           148 HPYFPLSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTP  227 (290)
Q Consensus       148 HpyF~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~i~i~~~~  227 (290)
                      ||||++++...+.+.........+.........        ..+.......+|++|....+...+.+...+.++.+....
T Consensus       159 HpYF~v~~~~~~~~~~l~~~~~~d~~~~~~~~~--------~~~~~~~~~~~D~vy~~~~~~~~i~~~~~~~~~~~~~~~  230 (297)
T 2cir_A          159 HTYFRIEDIEGTMVSNLAGMKLYDQLLKESYVD--------KHPVVTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRY  230 (297)
T ss_dssp             CCEEECSCGGGEEEESCTTCEEEETTTTEEEEC--------CSSSBCCSSCEEEEECCCCTTCCEEEEETTEEEEEEEEE
T ss_pred             CCEEECCCCCCEEECCCCCCEEEEECCCCCCCC--------CCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEEEC
T ss_conf             626844864523882688860564036776256--------787241685404798279987399995899609999938


Q ss_pred             CCCEEEEEECC-------CCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf             99889998089-------88876-6567749991056788888788888617978998399999999985
Q T0526           228 PAPCYFIFVSD-------PAFDK-GYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEW  289 (290)
Q Consensus       228 ~~~~~~v~~~~-------~~~~~-~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~~~~i~ve~  289 (290)
                      +++.+++|++.       ..... ..+++||||||.+.          .++++|+|||+|+.+++|..+.
T Consensus       231 ~~~~~vvWnP~~~~~~~~~d~ep~~~~~~~vCVEp~~~----------~~~v~L~PGes~~~~q~l~~~~  290 (297)
T 2cir_A          231 NLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHV----------HDFISLAPGKKWNAYQLLCKEE  290 (297)
T ss_dssp             SCCEEEEEECHHHHHHHCTTCCSTTGGGGEEEEEEEEE----------EEEEEECTTCEEEEEEEEECC-
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC----------CCCEEECCCCEEEEEEEEECCC
T ss_conf             99979997997446761111488876479899894557----------9988989999699999995366


No 9  
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Probab=100.00  E-value=1.2e-41  Score=278.76  Aligned_cols=281  Identities=18%  Similarity=0.187  Sum_probs=223.0

Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEEC---C--EEEEECCCCCCHH---HCCCCCEEEEEEEECCCCEEEECCEEEEECC
Q ss_conf             389987698499991789699999979---9--6089358980021---0566738854433302986887997999554
Q T0526             2 TIYTLSHGSLKLDVSDQGGVIEGFWRD---T--TPLLRPGKKSGVA---TDASCFPLVPFANRVSGNRFVWQGREYQLQP   73 (290)
Q Consensus         2 ~~~~L~~~~~~~~i~~~Ga~i~s~~~~---g--~~~l~~~~~~~~~---~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~   73 (290)
                      ..|||+|++++|+|.++||.|++|+..   |  .+++++++....+   +.+.+++|+||+|||++|+|.++|+.|+|+.
T Consensus        22 ~~~tl~n~~~~v~i~~~GA~i~~l~~~~~~G~~~~vvlg~~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~~y~l~~  101 (344)
T 1snz_A           22 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAI  101 (344)
T ss_dssp             EEEEEECSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHSSCSCTTCEECSBCSEEGGGEEEETTEEEECCC
T ss_pred             EEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCEECCEEEECCEEEECCC
T ss_conf             99999879999999775909999998888998877277899989994278866878652788259998998999998167


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECCCC
Q ss_conf             4788667787743353479998169889999754----788856599999998499069999998358950698623541
Q T0526            74 NVEWDAHYLHGDGWLGEWQCVSHSDDSLCLVYEH----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHP  149 (290)
Q Consensus        74 n~~~~~~~~HG~ar~~~w~v~~~~~~~~~l~~~~----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g~Hp  149 (290)
                      |++...++.|++.+...|...+.++++++|.+..    .+|||.++++++|+|.++.+.+++  +|.+++++|+++++|+
T Consensus       102 n~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~Pg~~~~~v~y~l~~~~~~~~~--~~~~~~~tp~~~~~h~  179 (344)
T 1snz_A          102 NKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLDGGELIVNY--RAQASQATPVNLTNHS  179 (344)
T ss_dssp             TBTTBEETTSSSCGGGSBCEEEEETTEEEEEEEECTTGGGCCSCEEEEEEEEEETTEEEEEE--EEEESSCEECBCEECC
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEE--ECCCCCCCCCCCCCCC
T ss_conf             88986433578860268988315442699999806776898741558999990488237788--4157878663222420


Q ss_pred             EEECC-------CCCEEEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEECCCEE-------CCCCC-----CCCCE
Q ss_conf             48218-------98669991461468656655676-3267886232547646061111-------30006-----89954
Q T0526           150 YFPLS-------PQTRIQAQASGYWLEREQWLAGE-FCEQLPQELDFNQPAPLPRQWV-------NNGFA-----GWNGQ  209 (290)
Q Consensus       150 yF~~~-------~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~-------d~~~~-----~~~~~  209 (290)
                      ||++.       +++.+++++...+..++..+|++ ...+..+.+||+.++.+++...       |..+.     .....
T Consensus       180 yfnl~~~~~~~i~~~~l~i~a~~~~~~d~~~iptg~~~~~~~~~~Df~~~~~i~~~~~~~~~~~~d~~~~~~~~~~~~~~  259 (344)
T 1snz_A          180 YFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHFC  259 (344)
T ss_dssp             CBCTTCTTCSCCTTCEEEECEEEECCBCTTSCBCSCCEECTTSTTCCSSCEEHHHHHHHTTCCCCEEEEEECCCSSCEEE
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCE
T ss_conf             32347554452001110003044998776457567643566883031077443521000233212553254268877313


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCCC--------CCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEE
Q ss_conf             999978999589999859998899980898887--------665677499910567888887888886179789983999
Q T0526           210 ARIEQPQEGYAIIMETTPPAPCYFIFVSDPAFD--------KGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTS  281 (290)
Q Consensus       210 ~~l~~~~~~~~i~i~~~~~~~~~~v~~~~~~~~--------~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~  281 (290)
                      +++.++.+++.+++..+  .+++++|+++....        ....+.+||||||+ +|||+|.+++. .++|+|||+++.
T Consensus       260 ~~l~~~~s~~~l~v~s~--~p~l~vyT~~~~~~~~~~~~g~~~~~~~giclEPq~-~PDA~N~~~~~-~~vL~pge~y~~  335 (344)
T 1snz_A          260 ARVHHAASGRVLEVYTT--QPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQN-WPDAVNQPRFP-PVLLRPGEEYDH  335 (344)
T ss_dssp             EEEEETTTTEEEEEEES--SSEEEEECCTTCEEEEECGGGCEEETTSCBEEEEES-CTTGGGCTTSC-CCEECTTSCEEE
T ss_pred             EEEEECCCCCEEEECCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCC-CEEECCCCEEEE
T ss_conf             89980899946787389--989999878987864437788466887899996888-98765788899-849999898989


Q ss_pred             EEEEEEE
Q ss_conf             9999998
Q T0526           282 EMSLRVE  288 (290)
Q Consensus       282 ~~~i~ve  288 (290)
                      ++++++.
T Consensus       336 ~t~y~Fs  342 (344)
T 1snz_A          336 TTWFKFS  342 (344)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
T ss_conf             9999999


No 10 
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=100.00  E-value=5.1e-41  Score=274.70  Aligned_cols=247  Identities=11%  Similarity=0.076  Sum_probs=188.9

Q ss_pred             CEEEEEECCCEEEEEECCCCEEEEEEEC-CEEEEECCCCCC----HHHCCCCCEEEEEEEECCCCEEEECCEEEEECCCC
Q ss_conf             9389987698499991789699999979-960893589800----21056673885443330298688799799955447
Q T0526             1 MTIYTLSHGSLKLDVSDQGGVIEGFWRD-TTPLLRPGKKSG----VATDASCFPLVPFANRVSGNRFVWQGREYQLQPNV   75 (290)
Q Consensus         1 m~~~~L~~~~~~~~i~~~Ga~i~s~~~~-g~~~l~~~~~~~----~~~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n~   75 (290)
                      |++++|+|+..+|+|+.+||+|+||+.. ++|+||..+...    ...++|+|+||||+|+.++                
T Consensus        41 l~~i~i~~~~~~a~i~l~GA~l~Sw~~~~~~e~Lw~s~~a~~~~~~aiRGGiPicfP~fG~~~~----------------  104 (309)
T 2hta_A           41 LDLIVVDHPQVKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQ----------------  104 (309)
T ss_dssp             EEEEEEEETTEEEEEETBTTEEEEEEETTSCCCBCBCTTCCCCTTCCCSBSBCEEBSCCSSCSS----------------
T ss_pred             CCEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCHHHCCCCCCCCCCCEEEEEECCCCCC----------------
T ss_conf             6589997899899998889899899949998889808254036888767888698623289987----------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEEECCC----EEEEEECC-----CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEEC
Q ss_conf             886677877433534799981698----89999754-----788856599999998499069999998358950698623
Q T0526            76 EWDAHYLHGDGWLGEWQCVSHSDD----SLCLVYEH-----RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTG  146 (290)
Q Consensus        76 ~~~~~~~HG~ar~~~w~v~~~~~~----~~~l~~~~-----~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g  146 (290)
                        .++|.|||||+++|++++++++    .++|++..     ..|||+|+++++|+|..     +++|+|+++++|||++|
T Consensus       105 --~~lp~HGFAR~~~W~l~~~~~~~~~~~v~~~L~~~~~t~~~~P~~f~l~~~~~L~~-----~l~v~N~~~~~~pf~~g  177 (309)
T 2hta_A          105 --QGLPSHGFARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGK-----TCEIELEAHGEFATTSA  177 (309)
T ss_dssp             --TTCCTTBSGGGSBCEEEEEEECSSCEEEEEEEECCHHHHHHSCCCCEEEEEEEESS-----SEEEEEEEESSEEEEEE
T ss_pred             --CCCCCCCCEECCCEEEEEECCCCCCEEEEEEECCCCCHHHHCCEEEEEEEEEECCC-----EEEEEECCCCCCCCCCC
T ss_conf             --88987633126854899843889818999997898302331750079999998686-----59999745885101502


Q ss_pred             CCCEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             54148218986699914614686566556763267886232547646061111300068995499997899958999985
Q T0526           147 WHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETT  226 (290)
Q Consensus       147 ~HpyF~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~i~i~~~  226 (290)
                      +||||++++..++++.+......+. .........       .......+..+|++|....+.+.|.++..++.|++..+
T Consensus       178 lHpYF~V~d~~~~~v~gl~~~~~D~-~~~~~~~~~-------~~~~~~~~~~~driy~~~~~~~~i~d~~~~r~i~i~~~  249 (309)
T 2hta_A          178 LHSYFNVGDIANVKVSGLGDRFIDK-VNDAKEGVL-------TDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHH  249 (309)
T ss_dssp             ECCEEECSCGGGCEEECCCSEEEET-TTTTEEEEC-------SSSCEECSSCEEEEESSCCSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEECCCHHCCEEECCCCCCCCC-CCCCCCCEE-------CCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf             5840665760020897678530303-557544252-------58855246855799758998689997899988999974


Q ss_pred             CCCCEEEEEECC-------CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf             999889998089-------888766567749991056788888788888617978998399999999985
Q T0526           227 PPAPCYFIFVSD-------PAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEW  289 (290)
Q Consensus       227 ~~~~~~~v~~~~-------~~~~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~~~~i~ve~  289 (290)
                       +++..+||++.       .++++..+++|||||||+.          ...+.+.||++++.+++|+|+.
T Consensus       250 -g~~~~VVWnP~~~~a~~m~D~~~~~~~~fvCVEP~~~----------~~~~~~~~g~~~~~~q~i~v~~  308 (309)
T 2hta_A          250 -HHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYA----------TAPQQATEEKPSRLAQTICVAK  308 (309)
T ss_dssp             -SCSEEEEEECHHHHHHHCTTSCTTGGGGEEEEEEEEE----------EEEEEEBTTBCEEEEEEEEEEC
T ss_pred             -CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEECCCCC----------CCCCCCCCCCCEEEEEEEEEEC
T ss_conf             -9983999796346423012376678888899798006----------9984537999679999999974


No 11 
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=100.00  E-value=3.1e-38  Score=257.17  Aligned_cols=237  Identities=17%  Similarity=0.159  Sum_probs=179.9

Q ss_pred             CEEEEEECCCEEEEEECCCCEEEEEEEC-C-EEEEECCCCCC----HHHCCCCCEEEEEEEECCCCEEEECCEEEEECCC
Q ss_conf             9389987698499991789699999979-9-60893589800----2105667388544333029868879979995544
Q T0526             1 MTIYTLSHGSLKLDVSDQGGVIEGFWRD-T-TPLLRPGKKSG----VATDASCFPLVPFANRVSGNRFVWQGREYQLQPN   74 (290)
Q Consensus         1 m~~~~L~~~~~~~~i~~~Ga~i~s~~~~-g-~~~l~~~~~~~----~~~~~~~~~l~P~~~r~~~~~~~~~G~~~~l~~n   74 (290)
                      |++++|+|+..+|+|+.+||+|+||+.+ | +|+||.++...    ...++|+|+||||+|+..                
T Consensus        21 l~~~~l~~~~~~a~i~l~Ga~l~s~~~~~g~~~~Lw~s~~a~~~~~~~IRGGiPv~fP~fG~~~----------------   84 (270)
T 1jov_A           21 IPVLHLKHAVGTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK----------------   84 (270)
T ss_dssp             EEEEEEEETTEEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS----------------
T ss_pred             CCEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEEECCHHHCCCCCCCCCCCEECCCCCCCCC----------------
T ss_conf             0289994899899998999689999979998037994847863799963486626453039999----------------


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCC--EEEEEECCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECCCCEEE
Q ss_conf             7886677877433534799981698--89999754788856599999998499069999998358950698623541482
Q T0526            75 VEWDAHYLHGDGWLGEWQCVSHSDD--SLCLVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFP  152 (290)
Q Consensus        75 ~~~~~~~~HG~ar~~~w~v~~~~~~--~~~l~~~~~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g~HpyF~  152 (290)
                           .|.|||||+++|++++++++  .+.+++....+||.|+++++|+|+     ++++++|+++++|||++|+||||+
T Consensus        85 -----~p~HGFAR~~~W~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~lt-----~~~~v~n~~~~~~~f~~glHpYF~  154 (270)
T 1jov_A           85 -----QPAHGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKVSMVFT-----DKCHLTFTHYGEESAQAALHTYFN  154 (270)
T ss_dssp             -----SSTTBSGGGSBCEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEES-----SSEEEEEEECCSSCEEEEECCEEE
T ss_pred             -----CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEC-----CEEEEEECCCCCCEEEEEEEEEEE
T ss_conf             -----8989751276249977617762389972345787632189999934-----237999746997147775401275


Q ss_pred             CCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf             18986699914614686566556763267886232547646061111300068995499997899958999985999889
Q T0526           153 LSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTPPAPCY  232 (290)
Q Consensus       153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~  232 (290)
                      +++..++.+.+......++... ..  ....      .+..+ ...+|++|......+.+.++..++.+.+..+ +++..
T Consensus       155 v~d~~~~~v~gl~~~~~~~~~~-~~--~~~~------~~~~~-~~~~d~iy~~~~~~~~i~d~~~~~~i~i~~~-g~~~~  223 (270)
T 1jov_A          155 IGDINQVEVQGLPETCFNSLNQ-QQ--ENVP------SPRHI-SENVDCIYSAENMQNQILDKSFNRTIALHHH-NASQF  223 (270)
T ss_dssp             CSCGGGEEEESCCSEEEETTTT-EE--EECC------SSBCC-SSCEEEEEECSSSEEEEEETTTTEEEEEEEE-SCSEE
T ss_pred             CCCCCCEEEECCCCCCEECCCC-CC--EECC------CCCCC-CCCEEEEEECCCCCEEEEECCCCCEEEEEEC-CCCCE
T ss_conf             1783216996788644100015-32--1037------87135-7778799917998789997899988999984-99968


Q ss_pred             EEEECCC----CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEE
Q ss_conf             9980898----88766567749991056788888788888617978998399999999
Q T0526           233 FIFVSDP----AFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLR  286 (290)
Q Consensus       233 ~v~~~~~----~~~~~~~~~~vciEP~~~~~da~n~~~~~~~~~L~PGe~~~~~~~i~  286 (290)
                      +||++..    ++.+..+++||||||...            ..+|+|||+++.+++|+
T Consensus       224 vVWnP~~~~a~~m~d~~~~~fvCVEpa~~------------~~~L~PGes~t~~~~i~  269 (270)
T 1jov_A          224 VLWNPWHKKTSGMSETGYQKMLCLETARI------------HHLLEFGESLSVEISLK  269 (270)
T ss_dssp             EEEECTTSCCTTCCTTGGGGEEEEEEEEE------------EEEECTTCEEEEEEEEC
T ss_pred             EEECCCCCCCCCCCCCCCCCEEEECCCCC------------CCCCCCCCEEEEEEEEE
T ss_conf             99797410004174478867899792677------------76088999199999992


No 12 
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=96.95  E-value=0.016  Score=32.69  Aligned_cols=126  Identities=12%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEECCEEEEECCCCCCHHHCCCCCE-EEE-EEEECCCCEEEECCEEEEECCCCCCCC
Q ss_conf             389987698499991789699999979960893589800210566738-854-433302986887997999554478866
Q T0526             2 TIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCFP-LVP-FANRVSGNRFVWQGREYQLQPNVEWDA   79 (290)
Q Consensus         2 ~~~~L~~~~~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~~~~~~~~-l~P-~~~r~~~~~~~~~G~~~~l~~n~~~~~   79 (290)
                      ..|+|+|+-++++|+.+||.|.++..+.-  -  ...+     ...|+ |+. -.++..-..+.+      +..+.....
T Consensus         4 ~~itv~nd~~~~~is~~Gg~I~~~~Lk~y--~--~~~~-----~~~p~~L~~~~~~~~~~~~~g~------~~~~~~~~~   68 (280)
T 3bs6_A            4 KLISVKTDVLDLTINTRGGDVEQALLPAY--P--KELN-----STQPFQLLETSPQFIYQAQSGL------TGRDGPDNP   68 (280)
T ss_dssp             CEEEEECSSCEEEEETBTTEEEEEEEEEE--E--SSTT-----CCSEEEEEEEETTEEEEEEEEE------ESTTCTTSG
T ss_pred             CEEEEECCCEEEEEECCCCEEEEEECCCC--C--CCCC-----CCCCEEECCCCCCCEEEEEEEE------ECCCCCCCC
T ss_conf             19999889699999899977858781578--5--4427-----9998597268998514786100------025787764


Q ss_pred             CCCCCCCCCCEEE--EEEECCC--EEEEEECCCCCCCCEEEEEEEEEECCE--EEEEEEEEECCCCCEEEEE
Q ss_conf             7787743353479--9981698--899997547888565999999984990--6999999835895069862
Q T0526            80 HYLHGDGWLGEWQ--CVSHSDD--SLCLVYEHRSGVYHYRVSQAFHLTADT--LTVTLSVTNQGAETLPFGT  145 (290)
Q Consensus        80 ~~~HG~ar~~~w~--v~~~~~~--~~~l~~~~~~~P~~~~l~~~~~L~~~~--L~v~~~v~N~g~~~~p~~~  145 (290)
                      .+..-..+.....  ....+.+  +++|+.....   ..+++.+|++..+.  +.++++|+|.++++.....
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~~~~~~vt~~~~~~~---g~~v~k~ytf~~d~Y~i~~~~~v~N~s~~~~~~~~  137 (280)
T 3bs6_A           69 ANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAA---GNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISS  137 (280)
T ss_dssp             GGSSCCBCBCSCSEEECCTTCSEEEEEEEEECTT---CCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEE
T ss_pred             CCCCCCCEEECCCCEEECCCCCCEEEEEEEECCC---CEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCE
T ss_conf             6777743484477237548985079999998799---85999999988995789999999926888641143


No 13 
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12}
Probab=95.99  E-value=0.062  Score=28.94  Aligned_cols=125  Identities=11%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             EEEEECCCEEEEEECCCCEEEEEEECCEEEEECCCCCCHHHCCCCC-EEEEEEEECCCCEEEECCEEEEECCCCCCCCCC
Q ss_conf             8998769849999178969999997996089358980021056673-885443330298688799799955447886677
Q T0526             3 IYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCF-PLVPFANRVSGNRFVWQGREYQLQPNVEWDAHY   81 (290)
Q Consensus         3 ~~~L~~~~~~~~i~~~Ga~i~s~~~~g~~~l~~~~~~~~~~~~~~~-~l~P~~~r~~~~~~~~~G~~~~l~~n~~~~~~~   81 (290)
                      .|+|+|+.++++|+.+||.|.++..+.  +-  ...+     ...| .|+.   .-....+..  +.--+..+......+
T Consensus        36 ~itvetd~~~~~~s~~GG~I~~~~Lk~--y~--~~~~-----~~~p~~l~~---~~~~~~~~~--~~~l~~~~~~~~~~~  101 (330)
T 3blc_A           36 LISVKTDVLDLTINTRGGDVEQALLPA--YP--KELN-----STQPFQLLE---TSPQFIYQA--QSGLTGRDGPDNPAN  101 (330)
T ss_dssp             EEEEECSSCEEEEETBTCCEEEEEEEE--EE--SSTT-----CSSEEEEEE---ECSSCEEEE--EEEEESTTCTTSGGG
T ss_pred             EEEEECCCEEEEEECCCCEEEEEECCC--CC--CCCC-----CCCCEEECC---CCCCCCEEE--EEEEECCCCCCCCCC
T ss_conf             799988979999979997785866167--85--3327-----999849705---898762156--541012678775467


Q ss_pred             CCCCCCCC---EEEEEEECCC--EEEEEECCCCCCCCEEEEEEEEEECCE--EEEEEEEEECCCCCEEEEE
Q ss_conf             87743353---4799981698--899997547888565999999984990--6999999835895069862
Q T0526            82 LHGDGWLG---EWQCVSHSDD--SLCLVYEHRSGVYHYRVSQAFHLTADT--LTVTLSVTNQGAETLPFGT  145 (290)
Q Consensus        82 ~HG~ar~~---~w~v~~~~~~--~~~l~~~~~~~P~~~~l~~~~~L~~~~--L~v~~~v~N~g~~~~p~~~  145 (290)
                      ..-..+..   .+.+. .+.+  .++|+.....   .+.++.+|+|..+.  +.++++|+|.|.+++....
T Consensus       102 ~~~~~~~~~~~~~~l~-~~~~~~~vtf~~~~~~---g~~v~k~ytf~~~~Y~i~~~~~v~N~s~~~~~~~~  168 (330)
T 3blc_A          102 GPRPLYNVEKDAYVLA-EGQNELQVPMTYTDAA---GNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISS  168 (330)
T ss_dssp             CSCCBCBCSCSEEECC-TTCCEEEEEEEEECTT---SCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEE
T ss_pred             CCCCCEEECCCEEEEC-CCCCCEEEEEEEECCC---CEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCC
T ss_conf             7775237257705734-8996069999998899---86999999986894689999999947888651130


No 14 
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=81.88  E-value=1.9  Score=19.64  Aligned_cols=58  Identities=17%  Similarity=0.262  Sum_probs=37.5

Q ss_pred             CCEEEEEECCCCCCCCEEEEEEEEEEC--CEEEEEEEEEECCCCCEEEEECCCCEEECCC
Q ss_conf             988999975478885659999999849--9069999998358950698623541482189
Q T0526            98 DDSLCLVYEHRSGVYHYRVSQAFHLTA--DTLTVTLSVTNQGAETLPFGTGWHPYFPLSP  155 (290)
Q Consensus        98 ~~~~~l~~~~~~~P~~~~l~~~~~L~~--~~L~v~~~v~N~g~~~~p~~~g~HpyF~~~~  155 (290)
                      ++.-+|.+....--..++++++|++.+  +-++...+|+|+|++++.+.-..=..+.+++
T Consensus       129 ~~~~~l~i~l~D~~~~l~v~l~y~i~~~~~vi~~~~~i~N~g~~~v~l~~~~s~~l~~~~  188 (745)
T 3mi6_A          129 DDAQTLVVSFNDRITGLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLPD  188 (745)
T ss_dssp             CCCEEEEEEEEETTTCCEEEEEEEEEGGGTEEEEEEEEECCSSSCEEEEEEEEEEEEESC
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCC
T ss_conf             985189999996798939999999978999899999999899988898504205255786


No 15 
>1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ...
Probab=81.18  E-value=2  Score=19.48  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             EEEEECCEEEEEEEEEECCCCCEEEEECCCCEE
Q ss_conf             999849906999999835895069862354148
Q T0526           119 AFHLTADTLTVTLSVTNQGAETLPFGTGWHPYF  151 (290)
Q Consensus       119 ~~~L~~~~L~v~~~v~N~g~~~~p~~~g~HpyF  151 (290)
                      .+.|..+.=+++++|+|+||+|..+  |.|--|
T Consensus        12 ~I~lN~gr~~~~l~V~N~GDRpIQV--GSH~HF   42 (101)
T 1ejx_B           12 QIALNTGRATCRVVVENHGDRPIQV--GSHYHF   42 (101)
T ss_dssp             EEECSTTCCEEEEEEEECSSSCEEE--ETTSCG
T ss_pred             CEEECCCCCEEEEEEEECCCCCEEE--CCCCCH
T ss_conf             7887699967899977279863587--354553


No 16 
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=77.29  E-value=2.6  Score=18.72  Aligned_cols=30  Identities=27%  Similarity=0.435  Sum_probs=22.3

Q ss_pred             EEEECCEEEEEEEEEECCCCCEEEEECCCCEE
Q ss_conf             99849906999999835895069862354148
Q T0526           120 FHLTADTLTVTLSVTNQGAETLPFGTGWHPYF  151 (290)
Q Consensus       120 ~~L~~~~L~v~~~v~N~g~~~~p~~~g~HpyF  151 (290)
                      +.|..+.-+++++|+|+||+|..+  |.|--|
T Consensus        19 I~lN~gr~~~~l~V~NtGDRpIQV--GSH~HF   48 (126)
T 4ubp_B           19 IEINAGREKTTIRVSNTGDRPIQV--GSHIHF   48 (126)
T ss_dssp             EETTTTSCEEEEEEEECSSSCEEE--ETTSCG
T ss_pred             EEECCCCCEEEEEEEECCCCCEEE--CCCCCH
T ss_conf             887699977899977379864686--165584


No 17 
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=72.42  E-value=3.5  Score=17.95  Aligned_cols=26  Identities=15%  Similarity=0.491  Sum_probs=17.3

Q ss_pred             EEEEEEECCEEEEEEEEEECCCCCEE
Q ss_conf             99999849906999999835895069
Q T0526           117 SQAFHLTADTLTVTLSVTNQGAETLP  142 (290)
Q Consensus       117 ~~~~~L~~~~L~v~~~v~N~g~~~~p  142 (290)
                      .-+|.+-+.+|+++++|||.|++|..
T Consensus       256 ~a~Y~VPGR~l~~~~~VTN~g~~~v~  281 (382)
T 1yew_A          256 DATYRVPGRAMRMKLTITNHGNSPIR  281 (382)
T ss_dssp             EEEEESSCSEEEEEEEEEECSSSCEE
T ss_pred             CCEEECCCCEEEEEEEEECCCCCCEE
T ss_conf             55763478179999999748987468


No 18 
>1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=67.83  E-value=4.3  Score=17.33  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             EEEEECCEEEEEEEEEECCCCCEEEEECCCCEE
Q ss_conf             999849906999999835895069862354148
Q T0526           119 AFHLTADTLTVTLSVTNQGAETLPFGTGWHPYF  151 (290)
Q Consensus       119 ~~~L~~~~L~v~~~v~N~g~~~~p~~~g~HpyF  151 (290)
                      .+.|..+.-+++++|+|+||+|..+  |.|--|
T Consensus       117 ~I~ln~gr~~~~l~V~N~GDRPIQV--GSH~HF  147 (238)
T 1e9y_A          117 DITINEGKKAVSVKVKNVGDRPVQI--GSHFHF  147 (238)
T ss_dssp             EEETTTTCCCCEEEEEECSSSCEEE--ETTSCG
T ss_pred             CCCCCCCCCEEEEEEECCCCCCEEE--CCCCCH
T ss_conf             6013799866999995699875054--365424


No 19 
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=64.52  E-value=5  Score=16.93  Aligned_cols=19  Identities=37%  Similarity=0.473  Sum_probs=13.9

Q ss_pred             EECCCCEEEEEEEEEEEEC
Q ss_conf             9789983999999999859
Q T0526           272 ALAPGESTTSEMSLRVEWL  290 (290)
Q Consensus       272 ~L~PGe~~~~~~~i~ve~~  290 (290)
                      .|+|||+.+..++|..+.|
T Consensus       661 ~L~pGes~~v~~~~~~~~l  679 (721)
T 2x41_A          661 LLNPGESEEVVLEIPVRDL  679 (721)
T ss_dssp             CBCTTCEEEEEEEEEGGGG
T ss_pred             CCCCCCEEEEEEEECHHHE
T ss_conf             5499982899999878890


No 20 
>3isy_A Bsupi, intracellular proteinase inhibitor; NP_388994.1, intracellular proteinase inhibitor (bsupi) from bacillus subtilis, structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=63.58  E-value=5.2  Score=16.82  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=27.7

Q ss_pred             CEEEEEEEEEECCEEEEEEEEEECCCCCEEEEEC
Q ss_conf             6599999998499069999998358950698623
Q T0526           113 HYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTG  146 (290)
Q Consensus       113 ~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~g  146 (290)
                      ++.+++...-.++.+.+.++++|.++++.++...
T Consensus         6 ~~~~~~~~~~~~e~v~~~ltl~N~~~~~v~l~F~   39 (120)
T 3isy_A            6 EVVLSIDAIQEPEQIKFNMSLKNQSERAIEFQFS   39 (120)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEECSSSCEEEEES
T ss_pred             EEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEC
T ss_conf             0799841002785299999999189976898977


No 21 
>2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus} PDB: 2cqt_A*
Probab=45.99  E-value=10  Score=15.01  Aligned_cols=49  Identities=14%  Similarity=0.052  Sum_probs=30.7

Q ss_pred             EECCCEEEEEECCCCCCCCEEEEEEEEE--ECCEEEEEEEEEECCCCCEEEEECC
Q ss_conf             8169889999754788856599999998--4990699999983589506986235
Q T0526            95 SHSDDSLCLVYEHRSGVYHYRVSQAFHL--TADTLTVTLSVTNQGAETLPFGTGW  147 (290)
Q Consensus        95 ~~~~~~~~l~~~~~~~P~~~~l~~~~~L--~~~~L~v~~~v~N~g~~~~p~~~g~  147 (290)
                      ..+.+.++|+....    ..+.++++-+  +++.-..+++|+|+++++..+.+..
T Consensus       118 ~~~~~~~~f~~~~~----gi~~e~~~fV~~~~~vev~~v~l~N~s~~~r~L~l~~  168 (842)
T 2cqs_A          118 RHGLGYSRITGERN----GLKVETLFFVPLGENAEVQKVTVTNTSDAPKTATLFS  168 (842)
T ss_dssp             EECSSEEEEEEEET----TEEEEEEEECCTTCSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             EECCCEEEEEEEEC----CEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEE
T ss_conf             97798789999969----9999999999189998999999997979958999999


No 22 
>3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium}
Probab=39.36  E-value=3.6  Score=17.85  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=13.1

Q ss_pred             EEEEECCEEEEEEEEEECCCCCEE
Q ss_conf             999849906999999835895069
Q T0526           119 AFHLTADTLTVTLSVTNQGAETLP  142 (290)
Q Consensus       119 ~~~L~~~~L~v~~~v~N~g~~~~p  142 (290)
                      +|.+-+.+|+++++|+|.|+++..
T Consensus       264 ~Y~VPgR~l~~~~~VtN~g~~~vr  287 (392)
T 3chx_A          264 VYKVPGRELTIQVKVTNKTDEPLK  287 (392)
T ss_dssp             EECSSSSEEEECCCC---------
T ss_pred             EEECCCCEEEEEEEEECCCCCCEE
T ss_conf             762478179999999748987568


No 23 
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=32.14  E-value=17  Score=13.64  Aligned_cols=48  Identities=4%  Similarity=-0.038  Sum_probs=29.5

Q ss_pred             CCCEEEEEECCCCCCCCEEEEEEEEE--ECCEEEEEEEEEECCCCCEEEEECCC
Q ss_conf             69889999754788856599999998--49906999999835895069862354
Q T0526            97 SDDSLCLVYEHRSGVYHYRVSQAFHL--TADTLTVTLSVTNQGAETLPFGTGWH  148 (290)
Q Consensus        97 ~~~~~~l~~~~~~~P~~~~l~~~~~L--~~~~L~v~~~v~N~g~~~~p~~~g~H  148 (290)
                      +.+..+++....    ..++++++-+  +++....+++|+|.++++..+.+..+
T Consensus       103 g~~~~~f~~~~~----gi~~e~~~fV~~~~~vev~rl~l~N~s~~~r~L~l~~y  152 (807)
T 1v7w_A          103 GLSYSKFQCDYN----GIHARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAFSF  152 (807)
T ss_dssp             ETTEEEEEEEET----TEEEEEEEECCTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEEEEEEC----CEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             698799999839----99999999986999889999999969799089999999


No 24 
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10
Probab=31.14  E-value=17  Score=13.54  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             EEEEECC---CEEEEEECCCCEEEEEEECCEEEEECC
Q ss_conf             8998769---849999178969999997996089358
Q T0526             3 IYTLSHG---SLKLDVSDQGGVIEGFWRDTTPLLRPG   36 (290)
Q Consensus         3 ~~~L~~~---~~~~~i~~~Ga~i~s~~~~g~~~l~~~   36 (290)
                      -+.|.++   +|.+.|..-.|.|+|++++|.|+.+..
T Consensus        10 ~~viD~g~~~~l~~tv~k~~gdi~si~y~G~el~~~~   46 (508)
T 1nkg_A           10 AYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSS   46 (508)
T ss_dssp             EEEEECCCTTCEEEEEETTTCCEEEEEETTEECBCSS
T ss_pred             EEEEECCCCCCEEEEEECCCCCEEEEEECCEEEECCC
T ss_conf             1998289875369999879986898888999844168


No 25 
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=26.18  E-value=21  Score=13.00  Aligned_cols=16  Identities=13%  Similarity=0.385  Sum_probs=9.5

Q ss_pred             EEEEEEEECCEEEEEE
Q ss_conf             9999998499069999
Q T0526           116 VSQAFHLTADTLTVTL  131 (290)
Q Consensus       116 l~~~~~L~~~~L~v~~  131 (290)
                      -+++|+|+++.|++.+
T Consensus        31 gtvtytldgndleiri   46 (85)
T 2kl8_A           31 GTVTYTLDGNDLEIRI   46 (85)
T ss_dssp             CEEEEEECSSCEEEEE
T ss_pred             CEEEEEECCCEEEEEE
T ss_conf             5589995497169998


No 26 
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=25.30  E-value=22  Score=12.90  Aligned_cols=58  Identities=17%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             CCCEEEEEEECCCEEEEEECC---CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEE
Q ss_conf             353479998169889999754---78885659999999849906999999835895069862
Q T0526            87 WLGEWQCVSHSDDSLCLVYEH---RSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGT  145 (290)
Q Consensus        87 r~~~w~v~~~~~~~~~l~~~~---~~~P~~~~l~~~~~L~~~~L~v~~~v~N~g~~~~p~~~  145 (290)
                      .+.+++.. ...++++|+.+-   ...+.+++++-.|+++.+++.++|+++|.++....|..
T Consensus       514 ~~~~y~~~-~~~~~~~~~~~g~~~~~~~~~~~~~K~~~~~~~~~~~~y~~~~~~~~~~~f~~  574 (659)
T 1k1x_A          514 VNQPYEYE-MIENGVKLWREGGVYAEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGV  574 (659)
T ss_dssp             SSSCCEEE-EETTEEEEEEEEEEESSSEEEEEEEEEEEEETTEEEEEEEEEESSCCCEEEEE
T ss_pred             CCCCCEEE-EECCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEE
T ss_conf             46762346-41571699996761346756548999999718950899999507985201468


No 27 
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=20.23  E-value=28  Score=12.27  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             EEEEECCEEEEEEEEEECCCCCEEEE
Q ss_conf             99984990699999983589506986
Q T0526           119 AFHLTADTLTVTLSVTNQGAETLPFG  144 (290)
Q Consensus       119 ~~~L~~~~L~v~~~v~N~g~~~~p~~  144 (290)
                      .+++++-++.+.++|+|..+.++|+.
T Consensus        56 ~vsl~~~tl~~~l~V~NPN~~~Lpi~   81 (174)
T 1yyc_A           56 GVTRDGVDYHAKVSVKNPYSQSIPIC   81 (174)
T ss_dssp             EECSSSEEEEEEEEEEECSSSCCBCC
T ss_pred             EECCCEEEEEEEEEEECCCCCCCCCC
T ss_conf             54322069999999999798770033


Done!