Query T0527 APC67421.1, Burkholderia thailandensis E264, 142 residues
Match_columns 142
No_of_seqs 125 out of 13326
Neff 9.6
Searched_HMMs 22458
Date Fri May 21 18:04:21 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0527.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0527.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eeh_A Putative light and redo 99.9 2.1E-26 9.1E-31 170.1 10.2 121 2-123 4-125 (125)
2 2wkq_A NPH1-1, RAS-related C3 99.9 1.5E-22 6.6E-27 148.0 6.1 131 8-140 10-143 (332)
3 2z6d_A Phototropin-2; PAS-fold 99.8 1.9E-21 8.3E-26 141.7 7.8 124 6-131 3-129 (130)
4 2pr5_A Blue-light photorecepto 99.8 9.9E-21 4.4E-25 137.6 10.7 126 13-142 3-131 (132)
5 2gj3_A Nitrogen fixation regul 99.8 5.4E-21 2.4E-25 139.1 8.6 116 8-125 4-119 (120)
6 3h9w_A Diguanylate cyclase wit 99.8 3.3E-21 1.5E-25 140.3 7.3 109 18-127 2-111 (115)
7 2v0u_A NPH1-1, LOV2; kinase, t 99.8 1.3E-21 5.7E-26 142.7 4.9 124 10-135 3-129 (146)
8 1v9y_A Heme PAS sensor protein 99.8 7.4E-21 3.3E-25 138.3 7.3 131 1-135 32-166 (167)
9 3lyx_A Sensory BOX/ggdef domai 99.8 2.4E-20 1.1E-24 135.4 8.2 116 10-127 8-123 (124)
10 2r78_A Sensor protein; sensory 99.8 5.2E-20 2.3E-24 133.5 9.8 115 1-123 3-117 (117)
11 3icy_A Sensor protein; sensory 99.8 5.3E-21 2.4E-25 139.1 3.9 116 6-123 1-118 (118)
12 3f1p_B ARYL hydrocarbon recept 99.8 4.6E-20 2E-24 133.8 6.1 116 10-127 2-120 (121)
13 3bwl_A Sensor protein; structu 99.8 1.4E-18 6.2E-23 125.3 10.1 117 2-123 10-126 (126)
14 2vlg_A Sporulation kinase A; h 99.8 5.5E-19 2.4E-23 127.6 7.3 110 12-126 2-111 (111)
15 3luq_A Sensor protein; PAS, hi 99.8 1E-18 4.6E-23 126.1 7.4 114 7-123 1-114 (114)
16 3ewk_A Sensor protein; PAS dom 99.8 6.4E-18 2.9E-22 121.5 11.1 118 2-121 104-227 (227)
17 3mjq_A Uncharacterized protein 99.7 2E-18 9.1E-23 124.4 8.0 119 11-134 1-119 (126)
18 3f1p_A Endothelial PAS domain- 99.7 9.5E-19 4.2E-23 126.3 5.8 109 17-127 7-116 (117)
19 1d06_A Nitrogen fixation regul 99.7 3.3E-18 1.5E-22 123.2 8.3 118 2-123 9-130 (130)
20 2qkp_A Uncharacterized protein 99.7 6.8E-19 3E-23 127.1 4.1 128 7-138 17-146 (151)
21 1wa9_A Period circadian protei 99.7 7.6E-21 3.4E-25 138.3 -7.2 131 2-134 141-276 (368)
22 1n9l_A PHOT-LOV1, putative blu 99.7 2.1E-17 9.4E-22 118.6 8.4 105 18-124 2-109 (109)
23 3gdi_A Period circadian protei 99.7 2.3E-18 1E-22 124.1 1.5 116 7-124 153-271 (309)
24 2vv6_A FIXL, sensor protein FI 99.7 7E-17 3.1E-21 115.6 8.0 115 17-135 1-119 (119)
25 3fc7_A HTR-like protein, senso 99.7 5.4E-17 2.4E-21 116.2 6.9 114 2-123 12-125 (125)
26 1byw_A Protein (human ERG pota 99.7 1.2E-16 5.5E-21 114.2 6.7 104 22-125 4-110 (110)
27 3mfx_A Sensory BOX/ggdef famil 99.6 4.7E-15 2.1E-19 105.2 8.2 116 5-125 3-125 (129)
28 3cax_A Uncharacterized protein 99.6 7.2E-16 3.2E-20 109.8 3.5 119 7-133 237-355 (369)
29 3ewk_A Sensor protein; PAS dom 99.6 1.4E-14 6.1E-19 102.5 9.6 119 21-141 1-119 (227)
30 3d72_A Vivid PAS protein VVD; 99.5 9.1E-14 4.1E-18 97.8 8.4 99 18-118 34-146 (149)
31 3clo_A Transcriptional regulat 99.5 1.4E-13 6.3E-18 96.7 8.3 124 2-126 26-167 (258)
32 1oj5_A Steroid receptor coacti 99.5 1.1E-13 4.7E-18 97.4 7.1 109 17-127 5-117 (132)
33 3fg8_A Uncharacterized protein 99.4 1E-13 4.5E-18 97.5 5.9 106 10-125 13-118 (118)
34 1wa9_A Period circadian protei 99.4 3.8E-16 1.7E-20 111.4 -7.0 118 23-142 11-153 (368)
35 3gdi_A Period circadian protei 99.4 2.4E-13 1E-17 95.4 3.6 120 12-133 18-143 (309)
36 3a0r_A Sensor protein; four he 99.3 1.3E-13 5.8E-18 96.9 -0.5 118 10-136 9-127 (349)
37 3b33_A Sensor protein; structu 99.2 3.2E-11 1.4E-15 83.2 7.7 107 9-122 7-114 (115)
38 1ll8_A PAS kinase; PAS domain, 99.2 2.6E-11 1.2E-15 83.7 5.7 106 14-123 3-113 (114)
39 1nwz_A PYP, photoactive yellow 99.1 3.8E-11 1.7E-15 82.8 5.4 107 10-122 18-125 (125)
40 1mzu_A PPR; photoactive yellow 99.1 4.8E-11 2.1E-15 82.2 4.5 105 1-108 13-120 (129)
41 2jhe_A Transcription regulator 99.0 6.5E-11 2.9E-15 81.5 3.0 110 3-124 74-187 (190)
42 3a0s_A Sensor protein; PAS-fol 98.9 3.4E-09 1.5E-13 71.6 8.9 95 18-121 1-96 (96)
43 2w0n_A Sensor protein DCUS; si 98.8 7.1E-10 3.2E-14 75.5 2.1 111 2-123 8-118 (118)
44 2ool_A Sensor protein; bacteri 97.7 0.00012 5.3E-09 45.6 7.3 75 21-98 44-119 (337)
45 2vea_A Phytochrome-like protei 96.4 0.00032 1.4E-08 43.2 -0.5 53 21-75 31-84 (520)
46 2o9c_A Bacteriophytochrome; ph 96.0 0.023 1E-06 32.5 7.5 109 20-140 54-163 (342)
47 3fos_A Sensor protein; sensor 83.0 2.3 0.0001 21.2 7.9 97 8-128 54-152 (214)
48 3e4o_A C4-dicarboxylate transp 50.6 12 0.00054 17.0 6.5 99 4-125 97-196 (305)
49 3lif_A Putative diguanylate cy 39.3 18 0.00082 16.0 7.3 97 8-127 57-156 (254)
50 1p0z_A Sensor kinase CITA; tra 37.3 20 0.00088 15.8 3.4 28 97-124 100-127 (131)
51 3ddj_A CBS domain-containing p 33.1 19 0.00083 15.9 2.2 40 99-139 257-296 (296)
52 3fgx_A Rbstp2171; structural g 28.4 17 0.00077 16.1 1.4 20 55-74 68-87 (114)
53 1vq8_K 50S ribosomal protein L 28.1 14 0.00063 16.6 0.9 35 86-120 78-114 (132)
54 3bbo_M Ribosomal protein L14; 23.8 19 0.00083 15.9 0.8 33 85-117 66-100 (121)
55 2zkr_k 60S ribosomal protein L 21.1 23 0.001 15.4 0.9 36 84-119 84-121 (140)
56 2o0y_A Transcriptional regulat 20.3 41 0.0018 14.0 6.7 45 97-141 204-253 (260)
57 3g6o_A Bacteriophytochrome; al 20.0 41 0.0018 14.0 6.2 61 21-88 28-88 (505)
No 1
>3eeh_A Putative light and redox sensing histidine kinase; structural genomics, PSI, MCSG, protein structure initiative; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.93 E-value=2.1e-26 Score=170.10 Aligned_cols=121 Identities=24% Similarity=0.473 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECC-CCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 579899999999987068279998079-8989986589986379987964312467887653224789987532102465
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPK-TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD 80 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~-~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~ 80 (142)
++|++||++|+.+++++++++|.+|++ +.++|+|+++++++||+++++.+.+..|.+++||||++.+.+.+..+.. +.
T Consensus 4 ~~l~~se~r~~~i~e~~~~~i~~~d~~~~~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~-~~ 82 (125)
T 3eeh_A 4 QQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMD-GE 82 (125)
T ss_dssp ------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCC-CC
T ss_conf 99999999999998649844999999899599978388651234532111110144205875203203544222034-32
Q ss_pred CCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 3222111001000243200025412455350367777788178
Q T0527 81 TYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 81 ~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
+++.+||+++++|+++|++.++.|++|++|++.+++|+++|||
T Consensus 83 ~~~~e~r~~~~~G~~~wv~~~~~~i~d~~g~~~~~~g~~~DIT 125 (125)
T 3eeh_A 83 SADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 0467788786998789999999999999989999999999809
No 2
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=1.5e-22 Score=148.02 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=113.7
Q ss_pred HHHHHHHHHHCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999870682799980---7989899865899863799879643124678876532247899875321024653222
Q T0527 8 EERFQLAVSGASAGLWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV 84 (142)
Q Consensus 8 e~r~~~~~~~~~~~i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~ 84 (142)
+-+|..++++++++++..| +++.++|+|+++++|+||+.+++.|.. +..+.+|+..+.....+..++..+..+..
T Consensus 10 ~~~l~~~~e~~~~~~vi~D~~~~dg~Ii~vN~a~~~l~Gy~~~EliG~~--~~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 87 (332)
T 2wkq_A 10 HGSLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--ARFLQGPETDRATVRKIRDAIDNQTEVTV 87 (332)
T ss_dssp ----CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 4399999970897599984899989499883899998883999985998--77717988899999999999984983999
Q ss_pred HHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 11100100024320002541245535036777778817899999999999999984
Q T0527 85 EYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELR 140 (142)
Q Consensus 85 e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l~ 140 (142)
+++..++||+.+|+..++.|++|++|++.+++|+++|||++|++|++|+++....+
T Consensus 88 e~~~~~kdG~~~~v~~~~~pi~d~~G~i~~~v~~~~DITe~k~~e~el~~~~~~~~ 143 (332)
T 2wkq_A 88 QLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKK 143 (332)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 99999789999999999996188999999999999957147898877888888888
No 3
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.85 E-value=1.9e-21 Score=141.73 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999870682799980---79898998658998637998796431246788765322478998753210246532
Q T0527 6 ASEERFQLAVSGASAGLWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
Q Consensus 6 ~se~r~~~~~~~~~~~i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~ 82 (142)
.+.+.|+.++++++.++.+.| +++.++|+|+++++|+||+++++.|.. +..++||+..+.....+..++.++.++
T Consensus 3 r~~~~l~~~~~~~~~~~~i~D~~~~d~~I~~vN~a~~~~~G~~~~elig~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~ 80 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN--CRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 568999999983899699998989979899998799998892989975986--676538778889999999998630452
Q ss_pred CCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHH
Q ss_conf 2211100100024320002541245535036777778817899999999
Q T0527 83 DVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDA 131 (142)
Q Consensus 83 ~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~ 131 (142)
..++++++++|+.+|+.++..|++|++|++.+++|+++|||++|+++++
T Consensus 81 ~~e~~~~~~dG~~~w~~~~~~pi~d~~g~~~~~i~~~~DITe~ke~~~e 129 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHC
T ss_conf 0699999628866999999999999999999999999988388899856
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, signaling protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.84 E-value=9.9e-21 Score=137.60 Aligned_cols=126 Identities=18% Similarity=0.261 Sum_probs=108.9
Q ss_pred HHHHHCCCEEEEEEC---CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE
Q ss_conf 998706827999807---98989986589986379987964312467887653224789987532102465322211100
Q T0527 13 LAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVR 89 (142)
Q Consensus 13 ~~~~~~~~~i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~ 89 (142)
.+++++|+||+..|+ ++.++|+|+++++++||+++++.+.. +..+.+|+..+.....+..++..+..++.+++++
T Consensus 3 ~l~d~~~~~i~v~d~~~~dg~I~~~N~a~~~~~G~s~~el~g~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~ 80 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKN--CRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNY 80 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHCCCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 68857884199998988979899996899999891999980541--0004441014999999999985288403565547
Q ss_pred ECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10002432000254124553503677777881789999999999999998429
Q T0527 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRRL 142 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l~~l 142 (142)
+++|..+|+..+..|+.+++|. .++++++|||++|++|++|+++..+|+.|
T Consensus 81 ~~dG~~~~~~~~~~~i~~~~~~--~~i~~~~DITe~k~~e~~L~~~~~~l~~l 131 (132)
T 2pr5_A 81 KKDGTMFWNELNIDPMEIEDKT--YFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp CTTSCEEEEEEEEEEEEETTEE--EEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEEEEEEECCCCC--EEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 4799799999888889909912--99889997659999999999999999813
No 5
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.84 E-value=5.4e-21 Score=139.09 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999998706827999807989899865899863799879643124678876532247899875321024653222111
Q T0527 8 EERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYR 87 (142)
Q Consensus 8 e~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r 87 (142)
.++|+.+++++|++++..|++|.++|+|+++++++||+++++.+.. +..+.||++.+.+.+.+...+..+.+|+.+++
T Consensus 4 ~~~~~~~~e~s~~~i~i~d~~g~i~~~N~a~~~~~G~~~~el~g~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 81 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKN--ESILSNGTTPRLVYQALWGRLAQKKPWSGVLV 81 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCB--GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHCCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--CCCCEECCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9999999971241529996999999996899998796956616754--00011013536789998763306973061255
Q ss_pred EEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 00100024320002541245535036777778817899
Q T0527 88 VRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 88 i~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
.+++||+.+|+..+++|++|++|++.+++|+++|||+.
T Consensus 82 ~~~kdG~~~~~~~~~~~i~d~~g~~~~~i~~~~DITel 119 (120)
T 2gj3_A 82 NRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 58699989999999999999998999999999956677
No 6
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.90A {Marinobacter aquaeolei VT8}
Probab=99.84 E-value=3.3e-21 Score=140.30 Aligned_cols=109 Identities=20% Similarity=0.435 Sum_probs=99.4
Q ss_pred CCCEEEEEECCC-CEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCC
Q ss_conf 682799980798-9899865899863799879643124678876532247899875321024653222111001000243
Q T0527 18 ASAGLWDWNPKT-GAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFR 96 (142)
Q Consensus 18 ~~~~i~~~d~~~-~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~ 96 (142)
+++++|.+|+++ .+.|+|+++.+++||+++++.+. ..|.+++||||++.+...+...+.++.+++.++|+++++|.++
T Consensus 2 t~~~~W~~D~~t~~~~yvn~~~~~i~G~~~e~~~~~-~~~~~~i~pdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 80 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSV-EDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYV 80 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBH-HHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEEEECCCCEEEEECHHHHHHHCCCHHHCCCC-CHHHHEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCH
T ss_conf 847999998999989999999999849997882893-0332012256799999999999855970789999996056520
Q ss_pred CEEEEEEECCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 2000254124553503677777881789999
Q T0527 97 WIQSRGQALWNSAGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 97 w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~ 127 (142)
|++.++.|++|++|++.+++|+++|||++..
T Consensus 81 wv~~~~~~~~d~~g~~~~~~g~~~DITee~~ 111 (115)
T 3h9w_A 81 WIRDVVHVVRDDSGEVEALIGFMFDISLEHH 111 (115)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECGGGGC
T ss_pred HHEEECEEEECCCCCEEEEEEEEEEECCCCC
T ss_conf 1102010499999899999999998997876
No 7
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.83 E-value=1.3e-21 Score=142.69 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=108.1
Q ss_pred HHHHHHHHCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999870682799980---798989986589986379987964312467887653224789987532102465322211
Q T0527 10 RFQLAVSGASAGLWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEY 86 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 86 (142)
+|+.+++++++++.+.| +++.++|+|+++++|+||+++++.|.. +..+.+|+..+.....+...+.++.+|..++
T Consensus 3 ~l~~~~e~~~~~~vi~d~~~~dg~I~~vN~a~~~~~Gy~~~el~G~~--~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 80 (146)
T 2v0u_A 3 FLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp SCCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 89999981898099995889989799996799998896999981774--2202033454999999999998199752799
Q ss_pred HEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 1001000243200025412455350367777788178999999999999
Q T0527 87 RVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVS 135 (142)
Q Consensus 87 ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~ 135 (142)
+.+++||+.+|+..+..|++|++|++.+++++++|||++|+.+++++.+
T Consensus 81 ~~~~kdG~~~~v~~~~~p~~d~~g~~~~~v~v~~DITe~k~~~~e~~~~ 129 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGV 129 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHHH
T ss_pred EEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf 8784388469999999999979989999999999888999999999999
No 8
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.83 E-value=7.4e-21 Score=138.31 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 95798999999999870682799980798989986589986379987964312467887653224789987532102465
Q T0527 1 SNALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD 80 (142)
Q Consensus 1 ~~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~ 80 (142)
.+|+++++.+|+.+++++++|++.+|.+|.++++|++++++|||+++++.+.. +..++++++.......+.....++.
T Consensus 32 ~~~~~~~~~~~~~~le~s~dgi~i~d~~g~Ii~~N~a~~~l~G~~~~eliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (167)
T 1v9y_A 32 TDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNN--IDMLIPRDLRPAHPEYIRHNREGGK 109 (167)
T ss_dssp --------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSB--GGGGSCGGGTTTHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99998889999999973876299995989899997799998657888824677--4333222233200124677766411
Q ss_pred C----CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 3----222111001000243200025412455350367777788178999999999999
Q T0527 81 T----YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVS 135 (142)
Q Consensus 81 ~----~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~ 135 (142)
. ...+...+++||..+|+..+..|+..++ .+ .++++++|||++|++|++|++.
T Consensus 110 ~~~~~~~~e~~~~~kdG~~~~v~isi~~i~~~~-~~-~~v~i~~DITe~k~~ee~l~~L 166 (167)
T 1v9y_A 110 ARVEGMSRELQLEKKDGSKIWTRFALSKVSAEG-KV-YYLALVRDASVEMAQKEQTRQL 166 (167)
T ss_dssp -------CEEEEECTTSCEEEEEEEEEEEEETT-EE-EEEEEEEC--------------
T ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEEEEECC-EE-EEEEEEEECHHHHHHHHHHHHH
T ss_conf 334543169999984023532079999999699-89-9999999987999999999703
No 9
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.82 E-value=2.4e-20 Score=135.35 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=104.1
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE
Q ss_conf 99999870682799980798989986589986379987964312467887653224789987532102465322211100
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVR 89 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~ 89 (142)
++..+++++|++++.+|++|.+++||++++++|||+++++.+.. +..+++|.+...+...+...+..+..+..++++.
T Consensus 8 ~~~~~fd~~~d~i~~~d~~g~i~~~N~~~~~~~g~~~~e~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 85 (124)
T 3lyx_A 8 QRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQP--VNMLHVPGDTEHITSEVISAVENQGKWTGEIRML 85 (124)
T ss_dssp HHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEEE
T ss_pred HHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--HHEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999964711508997999799891999999882999992997--4225561454567788898875068520266552
Q ss_pred ECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 10002432000254124553503677777881789999
Q T0527 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~ 127 (142)
+++|+.+|+..+.+|++|++|++.+++++++|||++|+
T Consensus 86 ~~~g~~~~~~~~~~pi~d~~g~~~~~i~i~~DITerK~ 123 (124)
T 3lyx_A 86 HKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp CTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 36996889999987899899999999999999937735
No 10
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.82 E-value=5.2e-20 Score=133.50 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 95798999999999870682799980798989986589986379987964312467887653224789987532102465
Q T0527 1 SNALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD 80 (142)
Q Consensus 1 ~~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~ 80 (142)
+|+|+.|+++|+.+++++++++|.+|+++.++++|+++++++||+++++.+. .+.+++||+|.+.+...+..+.. +.
T Consensus 3 ~e~L~~~e~~fr~i~e~~~~~i~i~d~~g~i~~~N~~~~~~~g~~~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (117)
T 2r78_A 3 TENLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLAL--DWGVLSRGVDSGWAAASLARIVG-GE 79 (117)
T ss_dssp CCSHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTC--BTTTTTTCSTTSHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHC-CC
T ss_conf 8999999999999998167450999699989999399999879597894126--73214540013657899999983-99
Q ss_pred CCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 3222111001000243200025412455350367777788178
Q T0527 81 TYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 81 ~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
++..++++++++|+.+|+.+++.|+.| |+ ++|+++|||
T Consensus 80 ~~~~e~~~~~~dG~~~~~~~~~~~i~d--~~---~~~~~~DIT 117 (117)
T 2r78_A 80 PLREERTVWTRNGDQLTVELSAHLLPD--GK---ILGIARDVS 117 (117)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEECTT--SC---EEEEEEC--
T ss_pred CCEEEEEEECCCCCEEEEEEEEEEEEC--CE---EEEEEEECC
T ss_conf 837899999799999999999999889--98---999999794
No 11
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.81 E-value=5.3e-21 Score=139.15 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCEEE--ECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999998706827999807989899--86589986379987964312467887653224789987532102465322
Q T0527 6 ASEERFQLAVSGASAGLWDWNPKTGAMY--LSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYD 83 (142)
Q Consensus 6 ~se~r~~~~~~~~~~~i~~~d~~~~~~~--~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~ 83 (142)
.|+++|+.+++++|++||.+|++++..+ +|+.+..++|++..+. ....+.+++||+|++.+...+..+..++.++.
T Consensus 1 ~~~e~~r~l~d~~p~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 1 SNAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGT--TRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp CHHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTE--EEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHCCCCCCHHHH--CCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9889999998549401899988898899965768746328495886--58988995698899898852002332234431
Q ss_pred CHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 2111001000243200025412455350367777788178
Q T0527 84 VEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 84 ~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
.++++++++|..+|+..++.|++|++|++.+++|+++|||
T Consensus 79 ~e~~~~~~~g~~~wv~~~~~~~~d~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 2015782599799999999999999979999999999779
No 12
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B
Probab=99.80 E-value=4.6e-20 Score=133.80 Aligned_cols=116 Identities=15% Similarity=0.264 Sum_probs=104.5
Q ss_pred HHHHHHHHCCCEEE-EEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf 99999870682799-98079898998658998637998796431246788765322478998753210246-53222111
Q T0527 10 RFQLAVSGASAGLW-DWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR-DTYDVEYR 87 (142)
Q Consensus 10 r~~~~~~~~~~~i~-~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~-~~~~~e~r 87 (142)
+|+.+.+.+|..++ ..|++|+++|+|+++++++||+++++.+. .+.+++||+|++.+...+...+.++ ..+..+++
T Consensus 2 ~f~~l~~~~p~~fi~r~d~dG~i~~vn~~~~~i~Gy~~~el~g~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~~ 79 (121)
T 3f1p_B 2 EFKGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGK--NIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp ------CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTS--BGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHH--HHHHHHCCCHHHEEEEEECCCCCCCCCEEEEEEE
T ss_conf 43112205995099999899999999989998879699998653--4566400000102222100010123430458997
Q ss_pred EEECCCCCCCEEEEEEECCCC-CCEEEEEEEEEEEHHHHHH
Q ss_conf 001000243200025412455-3503677777881789999
Q T0527 88 VRTRSGDFRWIQSRGQALWNS-AGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 88 i~~~~G~~~w~~~~~~~~~d~-~g~~~~~~g~~~DITe~k~ 127 (142)
++++||+++|++.++.|++|+ +|++..++|+.+|||++|+
T Consensus 80 ~~~kdG~~~w~~~~~~~i~d~~~g~~~~ii~v~~DIt~rkq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 47699959999999999993899969999999999953026
No 13
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protein, PSI-2, protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.77 E-value=1.4e-18 Score=125.30 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57989999999998706827999807989899865899863799879643124678876532247899875321024653
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~ 81 (142)
++|++++++|+.+++++|++++.+|++|.++++|+++++++||+++++.+. .+.++++|++.+.+...+..+. .+..
T Consensus 10 ~~L~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~~~g~~~eel~g~--~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (126)
T 3bwl_A 10 KRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGR--SIWEFDLMFDAEDVQTQLSGFS-VDER 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTS--BGGGTBTTCCHHHHHHHHHTCC-TTCE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHCCCHHHHHCC--CHHHHCCCCCHHHHHHHHHHHH-HCCC
T ss_conf 999999999999997197329999099989998457688869889998359--8989168348999999999998-1996
Q ss_pred CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 222111001000243200025412455350367777788178
Q T0527 82 YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 82 ~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
...+++++++||+++|+..+.+|+. .+|++ .++++++|||
T Consensus 87 ~~~e~~~~~kdG~~~~~~~~~~~~~-~~~~~-~~~~v~~DIT 126 (126)
T 3bwl_A 87 RKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred EEEEEEEEECCCCEEEEEEEEEEEE-ECCEE-EEEEEEEECC
T ss_conf 6999999965995999999999998-59929-9999999879
No 14
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.77 E-value=5.5e-19 Score=127.64 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=99.0
Q ss_pred HHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEC
Q ss_conf 99987068279998079898998658998637998796431246788765322478998753210246532221110010
Q T0527 12 QLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTR 91 (142)
Q Consensus 12 ~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~ 91 (142)
+.++++++++++..|.+|.++|+|+++++++||+++++.+. .+.+++||+|+..+...+.. .+.....+||++++
T Consensus 2 ~~~l~~~~D~i~~~d~~G~i~~vN~~~~~i~Gy~~~el~g~--~~~~~~hped~~~~~~~~~~---~~~~~~~~~r~~~k 76 (111)
T 2vlg_A 2 EFPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGS--FLKTFLHEEDQFLVESYFYN---EHHLMPCTFRFIKK 76 (111)
T ss_dssp -------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTS--BGGGGBCGGGHHHHHHHHHC---SCCSSCEEEEEECT
T ss_pred EEEEEECCCEEEEECCCCEEEEECHHHHHHHCCCHHHHHHH--HHHCCCCHHHHHHHHHHHHH---HCCCEEEEEEEECC
T ss_conf 17668367379999899849999989999878998896554--43115988899999999985---04860644568958
Q ss_pred CCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHH
Q ss_conf 00243200025412455350367777788178999
Q T0527 92 SGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRK 126 (142)
Q Consensus 92 ~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k 126 (142)
||+++|++.++.++.++.|.+.+.+.+..|||++|
T Consensus 77 dG~~~Wve~~~~~i~~~~g~~~r~i~~~~di~e~k 111 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTTRAERTEREIILKMKVLEEE 111 (111)
T ss_dssp TSCEEEEEEEEEEC-------CCCEEEEEEEC---
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 99999999999999879979407999998803279
No 15
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.76 E-value=1e-18 Score=126.06 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999999870682799980798989986589986379987964312467887653224789987532102465322211
Q T0527 7 SEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEY 86 (142)
Q Consensus 7 se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 86 (142)
||++|+.+++++|+++|.+|.+++++++|+++++++|++++++.+... ..++|.+.+.....+...+.++.....+.
T Consensus 1 Se~~lr~i~~~~p~~i~~~D~~g~~~~~N~~~~~~~g~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 1 SDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSH---YDIFPEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp CCHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBH---HHHCTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHHHHCHHHEEECCCCCEEEECHHHHHHHCCCCHHCCCCCC---CCCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 979999999710467299979996999949989872457000268762---00123310233358999980898400342
Q ss_pred HEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 1001000243200025412455350367777788178
Q T0527 87 RVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 87 ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
+..+++|..+|+..++.|++|++|++.+++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~pi~d~~G~v~g~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 2101378329999999999999999999999999859
No 16
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.75 E-value=6.4e-18 Score=121.52 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57989999999998706827999807989899865899863799879643124678876532247899875321024653
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~ 81 (142)
.+++++.++++.+++++++++|.+|+++.++++|+++++++||+++++.+. .+..++||++.......+..++..+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (227)
T 3ewk_A 104 KEAEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQ--SPSILDSPLADQETLAAMQEALQAGQP 181 (227)
T ss_dssp THHHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSS--CGGGGBCTTSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHCCCCHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999876799998641026998489759999868876449997996214--654211454210134566776522674
Q ss_pred CCCHHHEEE------CCCCCCCEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 222111001------0002432000254124553503677777881
Q T0527 82 YDVEYRVRT------RSGDFRWIQSRGQALWNSAGEPYRMVGWIMD 121 (142)
Q Consensus 82 ~~~e~ri~~------~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~D 121 (142)
+..+++.++ ++|+.+|+..++.|++|++|++.+++|+++|
T Consensus 182 ~~~e~~~~~k~~~~~~dG~~~wv~~~~~pi~~~~g~~~~~~~i~~D 227 (227)
T 3ewk_A 182 WSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp EECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf 6999999984374567982999999999999899999999999989
No 17
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.75 E-value=2e-18 Score=124.35 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=101.2
Q ss_pred HHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEE
Q ss_conf 99998706827999807989899865899863799879643124678876532247899875321024653222111001
Q T0527 11 FQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRT 90 (142)
Q Consensus 11 ~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~ 90 (142)
|+.+++++++++|.+|.+|+++++|+++.+++|++++++.+. .+.++++|++...+...+..+. .+..+..++++++
T Consensus 1 l~~ile~~~d~i~i~d~~g~i~~~N~a~~~~~g~~~~e~lg~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 77 (126)
T 3mjq_A 1 MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSM--HILTITSAGKMAEGEKILAELF-AGKKESLPLSLEK 77 (126)
T ss_dssp -CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHS--BHHHHHCTTCHHHHHHHHHHHH-HTCCSEEEEEEEC
T ss_pred CHHHHHCCCCCEEEECCCCCEEEEEHHHHHCCCCCHHHHCCC--EEEEEECCCCCCCCHHHHHHHH-CCCCCEEEEEEEC
T ss_conf 968985092245999299959999025330279986880131--0235402433322013455542-2576148999995
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 00024320002541245535036777778817899999999999
Q T0527 91 RSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRV 134 (142)
Q Consensus 91 ~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~ 134 (142)
++|.++|+.++..|+.++++ ..++++++|||++|++|..+..
T Consensus 78 ~~G~~~~v~~~~~~i~~~~~--~~~~~i~~DITerK~Ae~~~~~ 119 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKWHNE--PCLFAIIKDLSKEERASSPPFL 119 (126)
T ss_dssp TTSCEEEEEEEEEEEESSSS--EEEEEEEEECC-----------
T ss_pred CCCCEEEEEEEEEEEEECCE--EEEEEEEEECCHHHHHHHHHHH
T ss_conf 79989999999999998996--6999999988899998668976
No 18
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Probab=99.75 E-value=9.5e-19 Score=126.27 Aligned_cols=109 Identities=15% Similarity=0.291 Sum_probs=99.9
Q ss_pred HCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCC
Q ss_conf 06827999807989899865899863799879643124678876532247899875321024653222111001000243
Q T0527 17 GASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFR 96 (142)
Q Consensus 17 ~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~ 96 (142)
.++..++..+++|.++|+|+++++++||+++++.+. .+..++||+|...+.+.+...+.++..+..+++++++||.++
T Consensus 7 ds~~fi~~~~~dg~i~~~N~~~~~~~G~~~~el~g~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~i 84 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGR--SAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTS--BGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CEEEEECHHHCCHHHHHHHHCCCCCCCEECCEEEECCCCCEE
T ss_conf 758289999999989999989999859696791163--001672713511123333211111221001100187999799
Q ss_pred CEEEEEEECCCC-CCEEEEEEEEEEEHHHHHH
Q ss_conf 200025412455-3503677777881789999
Q T0527 97 WIQSRGQALWNS-AGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 97 w~~~~~~~~~d~-~g~~~~~~g~~~DITe~k~ 127 (142)
|+..+++|++|+ +|+|..++++.+|||++|+
T Consensus 85 wv~~~~~~i~d~~~~~~~~iv~~~~dITe~k~ 116 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 99999999997899939999999999952304
No 19
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two- component system; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.74 E-value=3.3e-18 Score=123.17 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57989999999998706827999807989899865899863799879643124678876532247899875321024653
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~ 81 (142)
++|++++++|+.+++++++|++.+|.+|.++++|++++++|||+++++.+.+ +..+++|+++......+...+.++..
T Consensus 9 ~~l~~~e~~l~~i~~~~~~~ii~~D~~g~i~~~N~~~~~~~G~~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T 1d06_A 9 DVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQN--LRILMPEPYRHEHDGYLQRYMATGEK 86 (130)
T ss_dssp HHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999970762169998999699887999988796979974997--54336812179999999999971987
Q ss_pred ----CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf ----222111001000243200025412455350367777788178
Q T0527 82 ----YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 82 ----~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
+..++...+++|..+|+..+.+++.+.++ ..++++++|||
T Consensus 87 ~~~~~~~e~~~~~~~G~~~~v~~~~s~~~~~~~--~~~~~i~~DIT 130 (130)
T 1d06_A 87 RIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp SSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECC
T ss_conf 556516899999489999999999999998994--89999999787
No 20
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159}
Probab=99.74 E-value=6.8e-19 Score=127.10 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999870682799980798989986589986--3799879643124678876532247899875321024653222
Q T0527 7 SEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKI--MGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV 84 (142)
Q Consensus 7 se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l--~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~ 84 (142)
|+++|+.+++++|++|+.+|.++.++|+|+++..+ +|+++.+..|.. +.++++|++.+.+...+..+..+ .....
T Consensus 17 s~e~l~~il~~~P~~i~~~D~~~~i~~~N~~~~~~~~~~~~~~~~iG~~--~~~~~p~~~~~~~~~~~~~~~~~-~~~~~ 93 (151)
T 2qkp_A 17 SVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRN--VELCHPPKVLDKVKKVFELLRNG-QRDKV 93 (151)
T ss_dssp CHHHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSB--GGGSSCHHHHHHHHHHHHHHHTT-SBSEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHHHCEECCCHHHHHCCC--EEEECCCCCCCCCHHEEECCCCC-CCCEE
T ss_conf 6999999996398309999699979998323131220247807860751--14881553344201102101246-51100
Q ss_pred HHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 111001000243200025412455350367777788178999999999999999
Q T0527 85 EYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
Q Consensus 85 e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~ 138 (142)
++.+ ..+|..+|+..+..|++|++|++.+++++++|||++|++|++|++++..
T Consensus 94 ~~~~-~~~~~gr~i~~~~~pv~d~~G~~~g~i~~~~DITe~k~~e~el~r~e~~ 146 (151)
T 2qkp_A 94 NMWF-QSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDEGH 146 (151)
T ss_dssp EEEE-EETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-------
T ss_pred CCCC-CCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHCC
T ss_conf 0000-0125771588863346879998999999999897999999999996566
No 21
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.73 E-value=7.6e-21 Score=138.27 Aligned_cols=131 Identities=9% Similarity=0.046 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 5798999999999870682799980798989986589986379987964312467887653224789987532102----
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLE---- 77 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~---- 77 (142)
++|++++.+|+.+++++++++|.+|.++.++++|++++.++||++.++.+. .+..++||+|++.+...+.....
T Consensus 141 ~~l~~~e~~~r~l~e~~~~~i~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~ 218 (368)
T 1wa9_A 141 PIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGR--SIMDFYHHEDLSVMKETYETVMKKGQT 218 (368)
T ss_dssp ECCCSCCSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTS--BGGGGBCTTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHCCCCCCHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 887755778899985197069999169968852001121134440120223--223455423499999999875553135
Q ss_pred -CCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf -465322211100100024320002541245535036777778817899999999999
Q T0527 78 -HRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRV 134 (142)
Q Consensus 78 -~~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~ 134 (142)
.+..+..++|+++++|.++|+..++.|++|++|....++++++|||+++++++++++
T Consensus 219 ~~~~~~~~e~r~~~k~G~~~wv~~~~~~~~d~~g~~~~~v~~~~dIt~~~~~e~~~~~ 276 (368)
T 1wa9_A 219 AGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEA 276 (368)
T ss_dssp TTCCEECCCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSC
T ss_pred CCCCCCHHHHEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 6665421101002058988999999999997899807899999991412532999997
No 22
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.71 E-value=2.1e-17 Score=118.55 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=92.6
Q ss_pred CCCEEEEEEC---CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
Q ss_conf 6827999807---9898998658998637998796431246788765322478998753210246532221110010002
Q T0527 18 ASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGD 94 (142)
Q Consensus 18 ~~~~i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~ 94 (142)
+..++...|+ ++.++|+|+++++++||+++++.|+. +..+.||++.+.....+...+..+.+++.|++++++||+
T Consensus 2 ~~~~~vi~Da~~pDg~Ii~vN~a~~~~~Gy~~~el~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~ 79 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGT 79 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 776299994889989699996899998893999980852--321246557999999998864059629999999917998
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 432000254124553503677777881789
Q T0527 95 FRWIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 95 ~~w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
.+|+..+..|++|++|++.+++++++|||.
T Consensus 80 ~~w~~~~~~pi~d~~G~~~~~v~~~~DITa 109 (109)
T 1n9l_A 80 PFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 999999986899999999999999997699
No 23
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.69 E-value=2.3e-18 Score=124.07 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCC
Q ss_conf 99999999870682799980798989986589986379987964312467887653224789987532102465--3222
Q T0527 7 SEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD--TYDV 84 (142)
Q Consensus 7 se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~--~~~~ 84 (142)
++.++..+.+++++++|.+|.++.++++|+++++++||+++++.+. .+.+++||+|++.+.+.+..+...+. .+..
T Consensus 153 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~n~~~~~~lG~~~~e~~~~--~~~~~~hpeD~~~~~~~~~~~~~~~~~~~~~~ 230 (309)
T 3gdi_A 153 SGYEAPRIPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIET--PVLVQLHPSDRPLMLAIHKKILQAGGQPFDYS 230 (309)
T ss_dssp CTTSSSCCCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTS--BHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHHHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 1445443320476238997178519997627742024575322233--32345540119999999999987547873123
Q ss_pred HHHEEECCCCCCCEEEEEEECCCCCC-EEEEEEEEEEEHHH
Q ss_conf 11100100024320002541245535-03677777881789
Q T0527 85 EYRVRTRSGDFRWIQSRGQALWNSAG-EPYRMVGWIMDVTD 124 (142)
Q Consensus 85 e~ri~~~~G~~~w~~~~~~~~~d~~g-~~~~~~g~~~DITe 124 (142)
++|++++||+++|+...++|++|+.| .+..++|+..|||+
T Consensus 231 e~r~~~~dG~~~wv~~~~~~i~~~~~~~~~~i~~~~~~~~~ 271 (309)
T 3gdi_A 231 PIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 55667699919999999999991799956899999998864
No 24
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.68 E-value=7e-17 Score=115.58 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=94.6
Q ss_pred HCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCHHHEEECC
Q ss_conf 06827999807989899865899863799879643124678876532247899875321024653----22211100100
Q T0527 17 GASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT----YDVEYRVRTRS 92 (142)
Q Consensus 17 ~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~----~~~e~ri~~~~ 92 (142)
++|+||+.+|.+|.++++|++++++|||+.+++.|.. +..+++|+++......+.....++.. +..+...+++|
T Consensus 1 t~pd~i~~~d~~g~I~~~N~~~~~l~G~~~~el~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQN--VNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEHHHHHHHHCCCHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
T ss_conf 9772999998999299871999998657899972566--44456631035678999999964866435640699986125
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 0243200025412455350367777788178999999999999
Q T0527 93 GDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVS 135 (142)
Q Consensus 93 G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~ 135 (142)
|..+|+..+.+|+.+.++ + .++++++|||++|++|++|++.
T Consensus 79 G~~~~~~~~~~~~~~~~~-~-~~~~~i~DITe~k~~e~~L~~L 119 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQSGGE-P-YFTGFVRDLTEHQQTQARLQEL 119 (119)
T ss_dssp SCEEEEEEEEEEEEETTE-E-EEEEEEEECC------------
T ss_pred CCEEEEEEEECCEECCCC-E-EEEEEEEECHHHHHHHHHHHCC
T ss_conf 513223567532033996-4-9999999818999999998477
No 25
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 43049, structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.68 E-value=5.4e-17 Score=116.22 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57989999999998706827999807989899865899863799879643124678876532247899875321024653
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~ 81 (142)
.++++++++|+.+++++|+++|.+|++|.++++|+++++++||+++++.+. .+.+++||++.+.+...+..++.++.+
T Consensus 12 ~~~~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (125)
T 3fc7_A 12 VSQERTRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQ--QLSAVMDSEAANQRLEAGKSAVENGTA 89 (125)
T ss_dssp --------------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTS--BGGGSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999997641123233543069998620000222322222221--222222211124567788876531444
Q ss_pred CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 222111001000243200025412455350367777788178
Q T0527 82 YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 82 ~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
...++.+ ..+|+..+..|+. .+|++.+++++++|||
T Consensus 90 ~~~~~~~-----~~r~~~~~~~pv~-~~~~~~~~~~v~~DIT 125 (125)
T 3fc7_A 90 TRSEDAV-----GGRHYHNQYIPVD-SHRKSDTFQLVSRDIT 125 (125)
T ss_dssp EEEEEEE-----TTEEEEEEEEESS-TTTTTTEEEEEEEECC
T ss_pred CCCEEEE-----CCCCCCEEEEEEE-ECCCEEEEEEEEEECC
T ss_conf 3101110-----0114530899999-0898999999999793
No 26
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.65 E-value=1.2e-16 Score=114.18 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=85.7
Q ss_pred EEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 99980---798989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 22 LWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 22 i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
..++| ++..++|+|+++++|+||+++++.|+.....-+.+|++.+.....+..++.++.++..++++.++||+.+|+
T Consensus 4 ~~i~~a~~~d~~I~~vN~a~~~~~G~~~~ei~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdg~~~w~ 83 (110)
T 1byw_A 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLC 83 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred EEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE
T ss_conf 99975889989499998899998896978966998045210010231677888888775236420268999579969999
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 002541245535036777778817899
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
..+..|++|++|++.+++++++|||||
T Consensus 84 ~~~~~pv~d~~G~i~~~i~~~~DITeR 110 (110)
T 1byw_A 84 LVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 999999999998999999999976899
No 27
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.58 E-value=4.7e-15 Score=105.16 Aligned_cols=116 Identities=12% Similarity=0.036 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf 899999999987068279998079898998658998637998796431246788765322478998753210246-----
Q T0527 5 SASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR----- 79 (142)
Q Consensus 5 ~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~----- 79 (142)
.+|.++|+.+++++++|++.+|.+|.+.++|++++++|||+++++.|.. +..+++++++......+......+
T Consensus 3 h~s~~~~~~il~~~~d~i~~~D~~G~I~~~N~aa~~l~G~~~~eliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T 3mfx_A 3 HSSLETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQD--WRNFLTEHHQARYDNLLSHDVQLGTNCGQ 80 (129)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSB--GGGGBCTTCCGGGGCTTC----------C
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7899999999972352159995999899999799956559979985990--99980716577789999999985032203
Q ss_pred --CCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf --5322211100100024320002541245535036777778817899
Q T0527 80 --DTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 80 --~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
.....|..++++||+.+|+.++.+++.+.++ .++|+++||-..
T Consensus 81 ~~~~~~~Ev~~~~~dG~~~~velsis~~~~~~~---~~v~v~rDI~~~ 125 (129)
T 3mfx_A 81 PVQHPAQETTLICASGKAKDVELSISYIPGHEP---MFVMVMHDLEHH 125 (129)
T ss_dssp CSCEEEEEEEEECTTSCEEEEEEEEEEECSSSC---EEEEEEEEC---
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEEEECCCC---EEEEEEEECCCC
T ss_conf 546650479999789979999999999989996---999999989753
No 28
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.57 E-value=7.2e-16 Score=109.79 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999999870682799980798989986589986379987964312467887653224789987532102465322211
Q T0527 7 SEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEY 86 (142)
Q Consensus 7 se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 86 (142)
|.++|+.+++++|++|+.+|.+++++|+|++ ..+++.+. +++|.. +.++++|+..+.+...+..+. +|.....++
T Consensus 237 s~~~l~~il~~~p~~i~~vD~~~~i~~~N~a-~~~~~~~~-~~iG~~--~~~~~p~~~~~~~~~~~~~~~-~g~~~~~e~ 311 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIFTRTP-SVLGRP--VQLCHPPKSVYVVNKILKAFK-EGRKKEATF 311 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSSCCCG-GGTTCB--TTTSSCGGGHHHHHHHHHHHH-HTSCSCEEE
T ss_pred CHHHHHHHHHCCCCCEEEECCCCEEEEECHH-HHHHCCCH-HHHCCC--HHHHCCHHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 5999999997297878999289939998677-78749888-982984--267289767999999999997-799538999
Q ss_pred HEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 10010002432000254124553503677777881789999999999
Q T0527 87 RVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALR 133 (142)
Q Consensus 87 ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~ 133 (142)
. ..++| +|+.++..|++|++|++.+++++++|||++|++|++++
T Consensus 312 ~-~~~~g--~~~~~~~~Pv~d~~G~~~G~v~~~~DITe~k~~E~e~r 355 (369)
T 3cax_A 312 W-LRLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGEKR 355 (369)
T ss_dssp E-EEETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSCCC
T ss_pred E-EEECC--EEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHH
T ss_conf 9-93199--89999999899989899999999999869999999898
No 29
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.56 E-value=1.4e-14 Score=102.46 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=102.6
Q ss_pred EEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCEEE
Q ss_conf 79998079898998658998637998796431246788765322478998753210246532221110010002432000
Q T0527 21 GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQS 100 (142)
Q Consensus 21 ~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~~~ 100 (142)
.|++.|.+|+++++|+++++++||+++++.|.. +..+.+|++...+...+......+.++..+..+++++|..+|+..
T Consensus 1 li~i~D~~G~i~~~N~a~~~~~G~~~eel~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~ 78 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQD--HRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSB--GGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred CEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEE
T ss_conf 799995999989833889998892999994998--889289413467766777764027724589999941543487655
Q ss_pred EEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHC
Q ss_conf 25412455350367777788178999999999999999842
Q T0527 101 RGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
Q Consensus 101 ~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l~~ 141 (142)
+.+|+.+.+|.+..++.+..|+|++++.++.+++.+.-+++
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~ 119 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDA 119 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66556536897633212320236999999998767999986
No 30
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=99.48 E-value=9.1e-14 Score=97.76 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCCEEEEEEC---CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHCCCCCCCC
Q ss_conf 6827999807---9898998658998637998796431246788765322-----------4789987532102465322
Q T0527 18 ASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDD-----------RARVLAALKAHLEHRDTYD 83 (142)
Q Consensus 18 ~~~~i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd-----------~~~~~~~~~~~~~~~~~~~ 83 (142)
...+++.+|+ ++.++|+|+++++|+||+++++.|+... .+.++++ -+...+.+...+..+.+++
T Consensus 34 ~s~ai~i~D~~~~D~~Ii~vN~af~~~tGys~eEviGr~~~--~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 111 (149)
T 3d72_A 34 TSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR--FLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQ 111 (149)
T ss_dssp TTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG--GGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCC--EECCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 15319999699998979998689998889299998598621--3017102135432222279999999999997698599
Q ss_pred CHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf 21110010002432000254124553503677777
Q T0527 84 VEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGW 118 (142)
Q Consensus 84 ~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~ 118 (142)
.|++.+++||..+|+..+.+|++|++|++.+++|+
T Consensus 112 ~E~~~~~kdG~~~wv~~~~~pv~De~G~v~~~vGi 146 (149)
T 3d72_A 112 VEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGF 146 (149)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf 99987859998999999999999999899999999
No 31
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=1.4e-13 Score=96.67 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCE-EEECHHHHHHHCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 579899999999987068279998079898-998658998637998796431------2467887653224789987532
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGA-MYLSPHFKKIMGYEDHELPDE------ITGHRESIHPDDRARVLAALKA 74 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~-~~~n~~~~~l~G~~~~~~~~~------~~~~~~~ihpdd~~~~~~~~~~ 74 (142)
+.|+++++.++.+.+.+|..+|.+|+..+. +|+|+.+.+++||++++.... ...|.++|||||+.........
T Consensus 26 ~~le~~~~~~~~~a~~~~~~~~i~Dl~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihP~D~~~~~~~~~~ 105 (258)
T 3clo_A 26 GIVEQHQQFVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYK 105 (258)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999857887899988788899986539998399966623145430440466625897899999999999
Q ss_pred HC------CCC--C--CCCCHHHEEECCCCCCCEEEEEEECC-CCCCEEEEEEEEEEEHHHHH
Q ss_conf 10------246--5--32221110010002432000254124-55350367777788178999
Q T0527 75 HL------EHR--D--TYDVEYRVRTRSGDFRWIQSRGQALW-NSAGEPYRMVGWIMDVTDRK 126 (142)
Q Consensus 75 ~~------~~~--~--~~~~e~ri~~~~G~~~w~~~~~~~~~-d~~g~~~~~~g~~~DITe~k 126 (142)
.+ ..+ . .+..+||+++++|.|+|+..++.++. +++|++..+. .+.|++..+
T Consensus 106 ~~~~l~~~~~~er~~y~~~~~~R~~~~~G~y~wv~~r~~vl~~~~~g~i~~~l-~~~d~~~~~ 167 (258)
T 3clo_A 106 FFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIF-CLYSLSADQ 167 (258)
T ss_dssp HHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEE-EEEEECSCC
T ss_pred HHHHHHHCCHHHHHEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEECC-CCCCCCCCC
T ss_conf 99987517865411135789999986999999998667787438998801113-323444333
No 32
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.46 E-value=1.1e-13 Score=97.40 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=87.2
Q ss_pred HCCCEEEEEECCCCEEEECHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCHHHEEECCC
Q ss_conf 0682799980798989986589-98637998796431246788765322478--99875321024653222111001000
Q T0527 17 GASAGLWDWNPKTGAMYLSPHF-KKIMGYEDHELPDEITGHRESIHPDDRAR--VLAALKAHLEHRDTYDVEYRVRTRSG 93 (142)
Q Consensus 17 ~~~~~i~~~d~~~~~~~~n~~~-~~l~G~~~~~~~~~~~~~~~~ihpdd~~~--~~~~~~~~~~~~~~~~~e~ri~~~~G 93 (142)
.+...+...|++|.++++|+.+ ..++||.++++.+. .+.+++||+|++. ...........+..+..+||++++||
T Consensus 5 ~~e~F~trh~ldg~i~~vd~~~~~~l~gy~~eelig~--s~~~~~Hp~D~~~~~~~~~~~~~~~~~~~~t~~yR~r~KdG 82 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRK--CIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDG 82 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHH--HHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTS
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHHHCCCHHHHCCC--CHHHEECCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCC
T ss_conf 6486899997997199998178676608897999499--19893884531356677788877516851134550365498
Q ss_pred CCCCEEEEEEECCCCCC-EEEEEEEEEEEHHHHHH
Q ss_conf 24320002541245535-03677777881789999
Q T0527 94 DFRWIQSRGQALWNSAG-EPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 94 ~~~w~~~~~~~~~d~~g-~~~~~~g~~~DITe~k~ 127 (142)
.|+|++.++++++|+.+ .+..++|+-..|+++..
T Consensus 83 ~~vWv~t~~~l~~~~~~~~~~~Ii~~h~i~~e~~~ 117 (132)
T 1oj5_A 83 TMLSAHTRCKLCYPQSPDMQPFIMGIHIIDREHSG 117 (132)
T ss_dssp CEEEEEEEEEEECC----CCCEEEEEEEEECC---
T ss_pred EEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCC
T ss_conf 09999998899982799981599999995257434
No 33
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.44 E-value=1e-13 Score=97.50 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=90.0
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE
Q ss_conf 99999870682799980798989986589986379987964312467887653224789987532102465322211100
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVR 89 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~ 89 (142)
.++.+++++++|++.+|.+++++++|+++++++|++++++.|+ .+.+++++++...+...+.+++.++.+...+++..
T Consensus 13 ~~e~~~~~~~~Gi~~vD~dgri~~~N~a~~~llG~~~eeliGk--~~~e~~p~~~~~~~~~~~~~~~~~g~~~~~e~~~~ 90 (118)
T 3fg8_A 13 GRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGR--VVTEVLPETQGSYFDALCRKVLATGREQQTRVDSL 90 (118)
T ss_dssp CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTS--BHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHCCC--CHHHHCCHHHCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 5999997089899999799829989899898857899998599--69994845331105678999985398499999998
Q ss_pred ECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 100024320002541245535036777778817899
Q T0527 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
.++| +|+++++.|.. +| ++++++|||++
T Consensus 91 ~~~~--~w~~v~~~p~~--dG----i~v~~rDIT~q 118 (118)
T 3fg8_A 91 YSPG--MTIEVTAAADS--GA----LVVHFRDVTAE 118 (118)
T ss_dssp SSTT--CEEEEEEEEET--TE----EEEEEEECSCC
T ss_pred CCCC--EEEEEEEEECC--CE----EEEEEEECCCC
T ss_conf 8899--89999999879--99----99999982799
No 34
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.43 E-value=3.8e-16 Score=111.35 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=89.9
Q ss_pred EEE-ECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----C---------------
Q ss_conf 998-0798989986589986379987964312467887653224789987532102465-----3---------------
Q T0527 23 WDW-NPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD-----T--------------- 81 (142)
Q Consensus 23 ~~~-d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~-----~--------------- 81 (142)
..+ +.+|.++|+|+++++++||+++++.|. .+.+++||||++.+.+.+........ .
T Consensus 11 ~vi~~~dG~I~~vN~~~~~ilGys~eEliG~--~~~dlihPeD~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (368)
T 1wa9_A 11 CVISMHDGIVLYTTPSITDVLGYPRDMWLGR--SFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYR 88 (368)
T ss_dssp EEEETTTCBEEEECTTHHHHHCCCTTSSTTS--BGGGGBCTTTHHHHHHHTTSCC------------CCCEEEEEEECSC
T ss_pred EEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEEECCCC
T ss_conf 9999999889999879999879399998699--79996499789999998623666530102456566079999622202
Q ss_pred ----CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ----2221110010002432000254124553503677777881789999999999999998429
Q T0527 82 ----YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRRL 142 (142)
Q Consensus 82 ----~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l~~l 142 (142)
.........++|.+.|+....+++.+.+|.+..+.++.+|||++|+++++|++++.+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~Dit~~k~~e~~l~~~e~~~r~l 153 (368)
T 1wa9_A 89 GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEIL 153 (368)
T ss_dssp CCSSCCSSSCCCCCCEEEEEEECCBCCCCCCCC------CCSCCCEEEEEEEECCCSCCSTTCBC
T ss_pred CEEECCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30573346653446448999999998634456773322244423779999888877557788999
No 35
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.36 E-value=2.4e-13 Score=95.41 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=96.0
Q ss_pred HHHHHHCCCEEEEEE-CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHEE
Q ss_conf 999870682799980-798989986589986379987964312467887653224789987532102-465322211100
Q T0527 12 QLAVSGASAGLWDWN-PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLE-HRDTYDVEYRVR 89 (142)
Q Consensus 12 ~~~~~~~~~~i~~~d-~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~-~~~~~~~e~ri~ 89 (142)
+.++++++..++.++ .+|+++|+|+++++++||+++++.|. .+.+++||+|++.+.+.+..... .+.....+.+..
T Consensus 18 e~~l~~~~~f~iv~~~~dG~I~~vN~~~~~llGys~eEl~g~--~~~~lihp~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 95 (309)
T 3gdi_A 18 EYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDA--KFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFT 95 (309)
T ss_dssp C----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCS--BGGGGBCTTTHHHHHHHTCTTSSCBCC---------
T ss_pred HHHHHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 999970588799999799879999789999859799998599--788938988889999997653147765332044455
Q ss_pred ECCCCCCCEEEEEEECCCCC----CEEEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 10002432000254124553----503677777881789999999999
Q T0527 90 TRSGDFRWIQSRGQALWNSA----GEPYRMVGWIMDVTDRKRDEDALR 133 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~----g~~~~~~g~~~DITe~k~~e~~L~ 133 (142)
..+|..+|+.+...+..+.. +.++.+.|+.+|||+++.++++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dit~~~~~e~~l~ 143 (309)
T 3gdi_A 96 QECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLC 143 (309)
T ss_dssp -----CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EE
T ss_pred ECCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHH
T ss_conf 305652378875211444345761789999889987400223445667
No 36
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.30 E-value=1.3e-13 Score=96.86 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=86.2
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEE
Q ss_conf 99999870682799980798989986589986379987964312467887653224789987532102465322211100
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVR 89 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~ 89 (142)
.++.+++++|+|++.+|.++.++++|+++++++||+++++.+.. +.++.++++...+.. ....++...... .
T Consensus 9 ~~e~il~~~~~gi~v~d~~g~i~~~N~aa~~llg~~~~e~~g~~--~~~l~~~~~~~~~~~---~~~~~~~~~~~~---~ 80 (349)
T 3a0r_A 9 FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRR--LKDLPDFEEIGSVAE---SVFENKEPVFLN---F 80 (349)
T ss_dssp CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCB--STTSTTTTHHHHHHH---HHHHHCCCCEEE---C
T ss_pred HHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCHHHHCCCC--HHHCCCHHHHHHHHH---HHHHCCCEEEEE---E
T ss_conf 99999986426748998959002706999999782989985998--789489788999999---998259839999---9
Q ss_pred ECCCCCCCEEEEEEECCCCCCE-EEEEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 1000243200025412455350-3677777881789999999999999
Q T0527 90 TRSGDFRWIQSRGQALWNSAGE-PYRMVGWIMDVTDRKRDEDALRVSR 136 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~-~~~~~g~~~DITe~k~~e~~L~~~~ 136 (142)
.++|. +|+.++..|+.+.+|. +.+++.+++|||++|++|+++++.+
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~~DIT~~~~~e~~l~~~e 127 (349)
T 3a0r_A 81 YKFGE-RYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRE 127 (349)
T ss_dssp CCBTT-BCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHH
T ss_pred ECCCC-EEEEEEEEEEECCCCCEEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 70881-899999999982898778899999984559999999999999
No 37
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.21 E-value=3.2e-11 Score=83.23 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHH
Q ss_conf 99999987068279998079898998658998637998796431246788765322478998753210246532-22111
Q T0527 9 ERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY-DVEYR 87 (142)
Q Consensus 9 ~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~-~~e~r 87 (142)
..++.++++++++++.+|.+|.++|+|+++++++|++++++.|.. +.++++..+. ....+.+++.++.++ ..+..
T Consensus 7 ~l~~~il~~~~~~i~~iD~~g~I~~~N~aa~~l~g~s~~el~G~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 82 (115)
T 3b33_A 7 SLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQS--LSQLIQHASL--DLALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp CHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCB--HHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHCCCC--HHHHCCCCHH--HHHHHHHHHHCCCCEEEEEEE
T ss_conf 899999851476599997999999989699977465488774985--9998598067--789999999829971789999
Q ss_pred EEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEH
Q ss_conf 00100024320002541245535036777778817
Q T0527 88 VRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDV 122 (142)
Q Consensus 88 i~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DI 122 (142)
+ +++|..+|+.++..|+.+++|..+ +..++||
T Consensus 83 ~-~~~G~~~~v~~s~~pi~~~~~~~i--lv~~rdi 114 (115)
T 3b33_A 83 F-VVDGRPLMLEVTVSPITWQRQLML--LVEMRKI 114 (115)
T ss_dssp E-EETTEEEEEEEEEEEEEETTEEEE--EEEEEEC
T ss_pred E-EECCCEEEEEEEEEEEEECCCEEE--EEEEEEC
T ss_conf 9-979919999999999995997799--9999968
No 38
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.17 E-value=2.6e-11 Score=83.72 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=85.7
Q ss_pred HHHHCCCEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHE
Q ss_conf 98706827999807-98989986589986379987964312467887653224789987532102465----32221110
Q T0527 14 AVSGASAGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD----TYDVEYRV 88 (142)
Q Consensus 14 ~~~~~~~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~----~~~~e~ri 88 (142)
+.+..+.+|+.+|. +|.++++|++++++|||+++++.+. .+.++++|++.......+.....++. ....+..+
T Consensus 3 ~~~~~n~ai~~~d~~~G~I~~vN~~a~~l~Gys~~el~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (114)
T 1ll8_A 3 MDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQ--KLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDI 80 (114)
T ss_dssp SSTTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTS--BGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE
T ss_pred CHHHCCEEEEEEECCCCEEEEHHHHHHHHHCCCHHHHHCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 4011271899999999999962389999878598999298--00011380059999999999996589700010259888
Q ss_pred EECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 01000243200025412455350367777788178
Q T0527 89 RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 89 ~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
++++|..+|+..+.+++..+++ . .++++++||+
T Consensus 81 ~~kdG~~~pv~l~~~~i~~~~~-~-~~v~vi~dv~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERR-L-CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSS-B-EEEEEEEECC
T ss_pred ECCCCEEEEEEEEEEEEEECCE-E-EEEEEEEECC
T ss_conf 8159979999999999999994-7-9999999764
No 39
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.14 E-value=3.8e-11 Score=82.79 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=80.1
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCHHHE
Q ss_conf 9999987068279998079898998658998637998796431246788765322-478998753210246532221110
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDD-RARVLAALKAHLEHRDTYDVEYRV 88 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd-~~~~~~~~~~~~~~~~~~~~e~ri 88 (142)
..+.+++++|+|++..|.+|.+++||+++++++||+++++.|+. +..+++|++ .+.+...+..+..++.....+...
T Consensus 18 ~~~~~ld~~~~Gii~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~--~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (125)
T 1nwz_A 18 MDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKN--FFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT 95 (125)
T ss_dssp CCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999856882699997999997688999988586668767970--4440487001799999999999749971589999
Q ss_pred EECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEH
Q ss_conf 0100024320002541245535036777778817
Q T0527 89 RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDV 122 (142)
Q Consensus 89 ~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DI 122 (142)
.+++|..+|++++..+..+.+ .. + .+++||
T Consensus 96 ~~~~g~~~~V~v~~~~~~~g~--~~-~-v~V~~i 125 (125)
T 1nwz_A 96 FDYQMTPTKVKVHMKKALSGD--SY-W-VFVKRV 125 (125)
T ss_dssp ECTTSCCEEEEEEEEECSSSS--EE-E-EEEEEC
T ss_pred ECCCCCEEEEEEEEEEECCCC--EE-E-EEEEEC
T ss_conf 714996899999999913899--69-9-999989
No 40
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.10 E-value=4.8e-11 Score=82.21 Aligned_cols=105 Identities=6% Similarity=-0.040 Sum_probs=80.5
Q ss_pred CHHHHHH-HHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC
Q ss_conf 9579899-9999999870682799980798989986589986379987964312467887653-2247899875321024
Q T0527 1 SNALSAS-EERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHP-DDRARVLAALKAHLEH 78 (142)
Q Consensus 1 ~~aL~~s-e~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihp-dd~~~~~~~~~~~~~~ 78 (142)
||.+++. +..++.+++++|+||+.+|.+|.+++||+++++|+||+++++.|.. +...+.| ++.+.+...+..++.+
T Consensus 13 ~~~~~~~~~~~~~a~lda~p~GIi~~D~~GrI~~~N~aa~~l~G~~~eeliGr~--~~~~~~P~~~~~~~~~~~~~~l~~ 90 (129)
T 1mzu_A 13 TEQIRGTIDGMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRN--FFTEVAPCTNIPAFSGRFMDGVTS 90 (129)
T ss_dssp -------CC---CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHEECCCCCCHHHHHHHHHHHHC
T ss_conf 899999998899999865990599998999599997899988683989977993--778078766678999999999975
Q ss_pred CCC-CCCHHHEEECCCCCCCEEEEEEECCCC
Q ss_conf 653-222111001000243200025412455
Q T0527 79 RDT-YDVEYRVRTRSGDFRWIQSRGQALWNS 108 (142)
Q Consensus 79 ~~~-~~~e~ri~~~~G~~~w~~~~~~~~~d~ 108 (142)
|.. ...++.+ +++|..+|+.++.....+.
T Consensus 91 G~~~~~~~~~~-~~~g~~~~V~v~l~~~p~~ 120 (129)
T 1mzu_A 91 GTLDARFDFVF-DFQMAPVRVQIRMQNAGVP 120 (129)
T ss_dssp SCCEEEEEEEE-ECSSCEEEEEEEEEECSST
T ss_pred CCCCCEEEEEE-ECCCCEEEEEEEEEECCCC
T ss_conf 99861589999-4399669999999982689
No 41
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.30A {Escherichia coli}
Probab=99.04 E-value=6.5e-11 Score=81.45 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 79899999999987068279998079898998658998637998796431246788765322478998753210246532
Q T0527 3 ALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
Q Consensus 3 aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~ 82 (142)
++++++++|+.+++++++|++.+|.+|.+++||++++++||++++++.+.. +..++++.+..... . ....
T Consensus 74 ~~e~~~~~~~~il~~~~d~i~~~D~~g~i~~~N~aa~~l~g~~~~~~~g~~--~~~l~~~~~~~~~~---~----~~~~- 143 (190)
T 2jhe_A 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHT--AAQLINGFNFLRWL---E----SEPQ- 143 (190)
T ss_dssp TTTHHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSB--GGGTSTTCCHHHHH---H----TCCC-
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCC--HHHHCCCHHHHHHH---H----HCCC-
T ss_conf 779999999999970642439998999999989999998791999996387--99958967699999---7----0776-
Q ss_pred CCHHHEEECCCCCCCEEEEEEECC----CCCCEEEEEEEEEEEHHH
Q ss_conf 221110010002432000254124----553503677777881789
Q T0527 83 DVEYRVRTRSGDFRWIQSRGQALW----NSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 83 ~~e~ri~~~~G~~~w~~~~~~~~~----d~~g~~~~~~g~~~DITe 124 (142)
.........+|+.+.+.. .|+. +++|.+.+.+.+++|+|+
T Consensus 144 ~~~~~~v~~~G~~~~~~~--~pi~~~~~~~~~~~~G~Vi~~r~~tr 187 (190)
T 2jhe_A 144 DSHNEHVVINGQNFLMEI--TPVYLQDENDQHVLTGAVVMLRSTIR 187 (190)
T ss_dssp SCEEEEEEETTEEEEEEE--EEETTTTEEEEEEEE-HHHHHHHHTT
T ss_pred CCCEEEEEECCEEEEEEE--EEEEEECCCCCCEEEEEEEEEECHHH
T ss_conf 442199999997999999--99998646898389999999987888
No 42
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.95 E-value=3.4e-09 Score=71.60 Aligned_cols=95 Identities=7% Similarity=0.061 Sum_probs=71.4
Q ss_pred CCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCC
Q ss_conf 68279998079898998658998637998796431246788765322478998753210246532221110010002432
Q T0527 18 ASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRW 97 (142)
Q Consensus 18 ~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w 97 (142)
++.|++..|.++.+++||+++++++||+.+++.|.. +.+++++++ +...+.....++..... ..+++..+|
T Consensus 1 m~~gvi~~D~~g~I~~~N~~a~~l~g~~~~e~iG~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~ 71 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRR--LKDLPDFEE---IGSVAESVFENKEPVFL----NFYKFGERY 71 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGSTTCHH---HHHHHHHHHHHTCCEEE----EEEEETTEE
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHHHHHH---HHHHHHHHHHCCCEEEE----EEECCCCEE
T ss_conf 987999998989899998798987599989976983--999501001---32589999847958999----998799199
Q ss_pred EEEEEEECCCCCCEEE-EEEEEEEE
Q ss_conf 0002541245535036-77777881
Q T0527 98 IQSRGQALWNSAGEPY-RMVGWIMD 121 (142)
Q Consensus 98 ~~~~~~~~~d~~g~~~-~~~g~~~D 121 (142)
+..+.+|+++++|+.+ +++.++.|
T Consensus 72 ~~v~~~Pi~~~~~~~i~g~v~~~~D 96 (96)
T 3a0s_A 72 FNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 9999999891899999999999989
No 43
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.83 E-value=7.1e-10 Score=75.50 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57989999999998706827999807989899865899863799879643124678876532247899875321024653
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~ 81 (142)
+.|.+..+.++.+++++++|++.+|.+++++++|++++++||++.+.+....... ..++.+...+.+.+ .++..
T Consensus 8 eei~~~~~~~~~il~~i~dgvi~iD~~g~I~~~N~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l----~~~~~ 81 (118)
T 2w0n_A 8 YEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTL--SHSWSQVVDVSEVL----RDGTP 81 (118)
T ss_dssp HHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCT--TCCCSCTHHHHHHH----HTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCHHHH--CCCCHHHCHHHHHH----HCCCE
T ss_conf 9999999999999971478189998999099999899988668988967936775--47802325389998----55983
Q ss_pred CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 222111001000243200025412455350367777788178
Q T0527 82 YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 82 ~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
...+ ....+|. ++.++..|+.+ +|++.+++.+++|||
T Consensus 82 ~~~~--~~~~~~~--~~~v~~~Pi~~-~~~~~G~V~~~~DIT 118 (118)
T 2w0n_A 82 RRDE--EITIKDR--LLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC--CEESSSC--EECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred EEEE--EEEECCE--EEEEEEEEEEE-CCEEEEEEEEEEECC
T ss_conf 4669--9998999--99999999999-998999999999669
No 44
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9
Probab=97.67 E-value=0.00012 Score=45.62 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=52.3
Q ss_pred EEEEEE-CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 799980-798989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 21 GLWDWN-PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 21 ~i~~~d-~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
+...+| .++.++++|+++.+++||+++++.|. .+.++++|++...+.+.+......+. ....+.+..++|...|.
T Consensus 44 ~Ll~ld~~d~~I~~vS~N~~~llG~~peellG~--~l~~ll~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 119 (337)
T 2ool_A 44 YLFVVSETDLRIASVSANVEDLLRQPPASLLNV--PIAHYLTAASAARLTHALHGGDPAAI-NPIRLDVVTPDGERAFN 119 (337)
T ss_dssp EEEEECTTTCBEEEEETTHHHHHSSCGGGGTTC--BGGGGBCHHHHHHHHHHHCC----CC-CSEEEEEEETTEEEEEE
T ss_pred EEEEEECCCCEEEEECCHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCCCCC-CCEEEEEECCCCCCEEE
T ss_conf 799998899979998661998839698998399--88897698889999998631474558-86899984168982268
No 45
>2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} SCOP: d.110.2.1 d.110.2.4 d.110.3.9
Probab=96.40 E-value=0.00032 Score=43.20 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=41.0
Q ss_pred EEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999807-989899865899863799879643124678876532247899875321
Q T0527 21 GLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAH 75 (142)
Q Consensus 21 ~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~ 75 (142)
++...|. ++.++++|+++.+++||+++++.|.. +.++++|++...+.+.+...
T Consensus 31 ~Ll~~d~~~~~I~~vS~n~~~lLG~~~eeLLGr~--l~dLl~~~~~~~i~~~l~~~ 84 (520)
T 2vea_A 31 LVVVLQEPDLTISQISANCTGILGRSPEDLLGRT--LGEVFDSFQIDPIQSRLTAG 84 (520)
T ss_dssp EEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTT--TTTTSBCC--------CCCT
T ss_pred EEEEEECCCCEEEEECCHHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHHC
T ss_conf 7999998999899995549988693989982997--78978978899999997513
No 46
>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} SCOP: d.110.2.1 d.110.3.9 PDB: 2o9b_A* 1ztu_A*
Probab=96.03 E-value=0.023 Score=32.52 Aligned_cols=109 Identities=12% Similarity=0.057 Sum_probs=60.1
Q ss_pred CEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 27999807-98989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 20 AGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 20 ~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
.+++..|. ++.++++|+++.+++|++++++.+.. +.+ +.|++...+...+...... .......+..++|...|+
T Consensus 54 G~Ll~ld~~d~~I~~vS~N~~~iLG~~peelLG~~--l~~-llpe~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 128 (342)
T 2o9c_A 54 GALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQT--LAA-LLPEQWPALQAALPPGCPD--ALQYRATLDWPAAGHLSL 128 (342)
T ss_dssp SEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCB--HHH-HCTTTHHHHHHHSCTTCCT--TCCEEEEECCSSSSEEEE
T ss_pred CEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHH-HCCHHHHHHHHHHHCCCCC--CEEEEEEEECCCCCEEEE
T ss_conf 47999988999499992889988592969985998--899-8884689999876407986--414678881588737999
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 002541245535036777778817899999999999999984
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELR 140 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l~ 140 (142)
... .. ++. .++-+-.+.+.....+..|+..-.+++
T Consensus 129 ~ih----r~-~~~--li~E~E~~~~~~~~~~~~l~~~~~~Ir 163 (342)
T 2o9c_A 129 TVH----RV-GEL--LILEFEPTEAWDSTGPHALRNAMFALE 163 (342)
T ss_dssp EEE----EE-TTE--EEEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred EEE----EC-CCE--EEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999----82-882--589988556333227999999999998
No 47
>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp}
Probab=82.98 E-value=2.3 Score=21.16 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=56.1
Q ss_pred HHHHHHHHHHCCC--EEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9999999870682--79998079898998658998637998796431246788765322478998753210246532221
Q T0527 8 EERFQLAVSGASA--GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE 85 (142)
Q Consensus 8 e~r~~~~~~~~~~--~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e 85 (142)
...|+.+.+..+. +++.+|.+|.++..++... .|+ .+.|++.+... ..++...--+
T Consensus 54 ~~~L~~~~~~~~~~~~i~i~d~~G~~i~~s~~~~--~~~----------------~~~~r~~~~~~----~~~~~~~is~ 111 (214)
T 3fos_A 54 QSILEKTFDSEPRFSGLYFLNAKGDVTASTTELK--TKV----------------NLADRSFFIKA----KETKKTVISD 111 (214)
T ss_dssp HHHHHHHHTTCTTEEEEEEEETTCBEEEESSCCS--SCC----------------BCTTSHHHHHH----HHHCSCEECC
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCC--CCC----------------CHHHCHHHHHH----HHCCCCCCCC
T ss_conf 9999999861877008999959997898057667--888----------------93446367777----6337742133
Q ss_pred HHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHH
Q ss_conf 1100100024320002541245535036777778817899999
Q T0527 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRD 128 (142)
Q Consensus 86 ~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~ 128 (142)
..+-...| .|+..-+.|+++.+|++.++++...|+......
T Consensus 112 ~~~~~~~g--~~~i~~s~pi~~~~G~~~Gvl~~~i~l~~l~~~ 152 (214)
T 3fos_A 112 SYSSRITG--QPIFTICVPVLDSKRNVTDYLVAAIQIDYLKNL 152 (214)
T ss_dssp CEECTTTC--SEEEEEEEEEECSSCCEEEEEEEEEEHHHHHHH
T ss_pred EEEECCCC--CEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHH
T ss_conf 03304678--458999986796899789999999649999999
No 48
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=50.58 E-value=12 Score=16.98 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 989999999998706-8279998079898998658998637998796431246788765322478998753210246532
Q T0527 4 LSASEERFQLAVSGA-SAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
Q Consensus 4 L~~se~r~~~~~~~~-~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~ 82 (142)
+.+-++.|+.+...+ -..+|.+|.+|.++-.|..- ++..+.+. + -.+++.|.+++ +++...
T Consensus 97 ~~~~~~~L~~~~~~~~a~~i~llD~~G~viasSn~~------~~~s~vg~--n------~s~RpYf~~Al----~g~~~~ 158 (305)
T 3e4o_A 97 LDRINRKLEALATSAEAAVIYLIDRSGVAVAASNWQ------EPTSFVGN--D------YAFRDYFRLAV----RDGMAE 158 (305)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEEEETTSBEEEETTTT------STTCCTTC--B------CTTSHHHHHHH----HHSEEE
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECCCC------CCCCCCCC--C------CCCCHHHHHHH----CCCCCE
T ss_conf 999999999996230721899998999999966877------87432366--6------33318899987----178604
Q ss_pred CCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 2211100100024320002541245535036777778817899
Q T0527 83 DVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 83 ~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
.+-+-...|+ ..-.-+.|+++ +|++++++++-.|+...
T Consensus 159 --~~~~~~~~~~--~~~~~a~PV~~-~g~viGVvv~~v~l~~l 196 (305)
T 3e4o_A 159 --HFAMGTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGV 196 (305)
T ss_dssp --EEEECTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHH
T ss_pred --EEEECCCCCC--CEEEEEEECCC-CCCEEEEEEEEECHHHH
T ss_conf --6763046676--23899752156-77147999999717999
No 49
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=39.30 E-value=18 Score=15.95 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=51.3
Q ss_pred HHHHHHHHHHCC--CEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 999999987068--279998079898998658998637998796431246788765322478998753210246532221
Q T0527 8 EERFQLAVSGAS--AGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE 85 (142)
Q Consensus 8 e~r~~~~~~~~~--~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e 85 (142)
++.++.+....+ ..++.+|++|.++..+..-. -|+ ...+++.+..... ..++..+ +.
T Consensus 57 ~~~l~~~~~~~~~~~~i~l~d~~G~~~~~~~~~~--~~~----------------~~~~r~~~~~~~~--~~~~~~~-~s 115 (254)
T 3lif_A 57 NERLRALADNLPQLSDVAILDADGQLTYASVKPV--PAL----------------DNSDRSYFRYHRA--NDDHTLL-IT 115 (254)
T ss_dssp HHHHHHHHHHCTTEEEEEEECTTSBEEEESSSSE--ECC----------------BCTTSHHHHHHHH--CCCCCCE-EE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCC--CCC----------------CCCHHHHHHHHHH--CCCCCEE-EE
T ss_conf 9999999852977159999959999883268887--778----------------8324278999984--7998459-80
Q ss_pred HHEEEC-CCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 110010-002432000254124553503677777881789999
Q T0527 86 YRVRTR-SGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 86 ~ri~~~-~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~ 127 (142)
-.+..+ +|. |+.....|+.+.+|.+.+++++..|+.....
T Consensus 116 ~~~~~~~~g~--~~~~i~~pi~~~~g~~~Gvl~~~l~l~~l~~ 156 (254)
T 3lif_A 116 GPIQSRTSGV--WVFVVSRRLETTDGKFFGVVVATIESEYFST 156 (254)
T ss_dssp EEEECTTTCC--EEEEEEEEEECTTCCEEEEEEEEECHHHHHH
T ss_pred EEEECCCCCC--CCEEEEEEECCCCCCEEEEEEEECCHHHHHH
T ss_conf 0376267895--3046898731688866799998468899998
No 50
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=37.32 E-value=20 Score=15.77 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=22.3
Q ss_pred CEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 2000254124553503677777881789
Q T0527 97 WIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 97 w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
.......|+++++|++++++.+..++++
T Consensus 100 ~~~~~~~PV~~~~G~viGvv~Vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEHHH
T ss_conf 1899999679799979999999988577
No 51
>3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=33.14 E-value=19 Score=15.91 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 00254124553503677777881789999999999999998
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREEL 139 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~~~~~l 139 (142)
...+.|+.|++|++.+++ +.+||-+.-.-..-+.+.+++|
T Consensus 257 ~~~~l~Vvd~~g~l~Giv-T~~Dil~al~~~~~~~~~~e~~ 296 (296)
T 3ddj_A 257 RIGSLLILNKDNTIRGII-TERDLLIALHHILVMEKFKEKL 296 (296)
T ss_dssp TCSEEEEECTTSCEEEEE-EHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCEEEEEE-EHHHHHHHHHHHHHCCHHHCCC
T ss_conf 998899990799899998-8999999998876130530639
No 52
>3fgx_A Rbstp2171; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.90A {Bacillus stearothermophilus}
Probab=28.40 E-value=17 Score=16.09 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 67887653224789987532
Q T0527 55 GHRESIHPDDRARVLAALKA 74 (142)
Q Consensus 55 ~~~~~ihpdd~~~~~~~~~~ 74 (142)
-.++.|||||++.+.+.+.+
T Consensus 68 lvLD~i~pd~~~~L~~d~EE 87 (114)
T 3fgx_A 68 LTFSCIVPEQEEELRQAAEE 87 (114)
T ss_dssp HHHTTBCGGGHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHH
T ss_conf 75640578838999999987
No 53
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=28.11 E-value=14 Score=16.62 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHEEECCCCCCCEEEEEEECCCCCCEEEE--EEEEEE
Q ss_conf 11001000243200025412455350367--777788
Q T0527 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGWIM 120 (142)
Q Consensus 86 ~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g~~~ 120 (142)
..++++||.++-+..++.++.|++|+|.+ +.|.+-
T Consensus 78 k~~~R~dG~~i~FddNa~VLi~~~~~p~GTrI~GpV~ 114 (132)
T 1vq8_K 78 KPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIA 114 (132)
T ss_dssp SCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEEC
T ss_pred CCEECCCCCEEECCCCEEEEECCCCCEEEEEEECCHH
T ss_conf 7239899998981797799998999993607956477
No 54
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.78 E-value=19 Score=15.92 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHEEECCCCCCCEEEEEEECCCCCCEEEE--EEE
Q ss_conf 111001000243200025412455350367--777
Q T0527 85 EYRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVG 117 (142)
Q Consensus 85 e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g 117 (142)
...++++||.++-+..++.++.+++|+|.+ +.|
T Consensus 66 kk~~~R~dG~~i~F~~Na~VLi~~~~~P~GTrI~G 100 (121)
T 3bbo_M 66 CKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFG 100 (121)
T ss_dssp SSCEECTTSCEECCSSCEEEECCTTSSCSSSCCCS
T ss_pred ECCEECCCCCEEECCCCEEEEECCCCCEEEEEEEC
T ss_conf 04217389998870895599998999991746961
No 55
>2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_R 3jyw_R
Probab=21.13 E-value=23 Score=15.36 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=27.4
Q ss_pred CHHHEEECCCCCCCEEEEEEECCCCCCEEEE--EEEEE
Q ss_conf 2111001000243200025412455350367--77778
Q T0527 84 VEYRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGWI 119 (142)
Q Consensus 84 ~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g~~ 119 (142)
.-+.++++||.++-+..++.++.+++|+|.+ +.|.+
T Consensus 84 tk~~~~R~dG~~i~FddNavVLin~~~~P~GTRI~GPV 121 (140)
T 2zkr_k 84 QRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 (140)
T ss_dssp CSSCEECTTSCEECCSSCEEEEBCTTSCBSSSCBCSCC
T ss_pred ECCCEECCCCCEEECCCCEEEEECCCCCEEEEEEECCC
T ss_conf 68862989998897799459999899988040697550
No 56
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=20.33 E-value=41 Score=13.99 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=29.5
Q ss_pred CEEEEEEECCCCCCEEEEEEEEEE---EHH--HHHHHHHHHHHHHHHHHC
Q ss_conf 200025412455350367777788---178--999999999999999842
Q T0527 97 WIQSRGQALWNSAGEPYRMVGWIM---DVT--DRKRDEDALRVSREELRR 141 (142)
Q Consensus 97 w~~~~~~~~~d~~g~~~~~~g~~~---DIT--e~k~~e~~L~~~~~~l~~ 141 (142)
-+...+.|++|.+|.++..+++.- .++ .....-+.|++.-+++..
T Consensus 204 g~~~iA~PV~~~~g~~~aal~v~~p~~r~~~~~~~~~~~~L~~~A~~Isa 253 (260)
T 2o0y_A 204 GSSGLSFPLVDSHGTVVAALTLGGPTGRFTEDRTPHYIECTRAAAEEISA 253 (260)
T ss_dssp TEEEEEEEEECTTCCEEEEEEEEEEGGGSCTTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 94799998999999999999997585868998999999999999999997
No 57
>3g6o_A Bacteriophytochrome; alpha/beta structure, PAS domain, chromophore, kinase, phosphoprotein, photoreceptor protein, receptor; HET: BLA; 2.85A {Pseudomonas aeruginosa} PDB: 3ibr_A* 3c2w_A*
Probab=20.03 E-value=41 Score=13.95 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=36.4
Q ss_pred EEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHE
Q ss_conf 79998079898998658998637998796431246788765322478998753210246532221110
Q T0527 21 GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRV 88 (142)
Q Consensus 21 ~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri 88 (142)
++..+|+++.++.+|.++.+++|++++...+.. .+.+.|+....+. ..+.+..++...+++
T Consensus 28 ~Ll~ld~~~~I~~vS~N~~~~lg~~~~~l~~~~---~~~~~~~~~~~l~----~~~~~~~~~~~~~~~ 88 (505)
T 3g6o_A 28 ALVTLRADGMVLAASENIQALLGFVASPGSYLT---QEQVGPEVLRMLE----EGLTGNGPWSNSVET 88 (505)
T ss_dssp EEEEECTTCBEEEEETTHHHHSSCCCCTTCBCC---HHHHCHHHHHHHH----HHHHSCSCCEEEEEE
T ss_pred EEEEEECCCCEEEEECCHHHHHCCCCCCCCCCC---HHHCCHHHHHHHH----HHHCCCCCCCEEEEE
T ss_conf 899990799589992779987389852035648---6761968999998----752238875037886
Done!