Query T0527 APC67421.1, Burkholderia thailandensis E264, 142 residues
Match_columns 142
No_of_seqs 125 out of 13326
Neff 9.6
Searched_HMMs 11830
Date Fri May 21 18:04:28 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0527.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0527.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08447 PAS_3: PAS fold; Int 99.6 1.5E-16 1.3E-20 112.1 7.2 89 31-119 1-91 (91)
2 PF00989 PAS: PAS fold; Inter 99.6 1E-15 8.6E-20 107.3 9.9 112 9-122 1-113 (113)
3 PF08448 PAS_4: PAS fold; Int 99.6 4.7E-16 4E-20 109.2 6.8 110 15-127 1-110 (110)
4 PF08670 MEKHLA: MEKHLA domain 96.6 0.0096 8.1E-07 33.1 9.7 111 7-121 30-144 (148)
5 PF07310 PAS_5: PAS domain; I 95.9 0.012 9.8E-07 32.7 6.9 94 21-119 41-136 (137)
6 PF08348 PAS_6: YheO-like PAS 95.6 0.011 9.1E-07 32.9 5.6 54 79-134 65-118 (118)
7 PF08446 PAS_2: PAS fold; Int 56.4 4.1 0.00034 18.1 3.3 52 21-74 17-70 (108)
8 PF09884 DUF2111: Uncharacteri 28.7 15 0.0012 14.9 3.1 47 72-123 37-83 (84)
9 PF02772 S-AdoMet_synt_M: S-ad 27.5 15 0.0013 14.8 2.8 66 41-122 11-77 (120)
10 PF06785 UPF0242: Uncharacteri 22.4 19 0.0016 14.2 5.3 105 8-120 286-392 (401)
No 1
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL , FAD in the redox potential sensor NifL , and a 4-hydroxycinnamyl chromophore in photoactive yellow protein . Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses . ; PDB: 3h9w_A 3eeh_A 2vlg_C 1g28_C 1jnu_D 1n9n_A 1n9l_A 1n9o_A 2a24_A 3f1o_A ....
Probab=99.64 E-value=1.5e-16 Score=112.09 Aligned_cols=89 Identities=37% Similarity=0.760 Sum_probs=83.3
Q ss_pred EEEECHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHEEECCCCCCCEEEEEEECCCC
Q ss_conf 8998658998637998796-4312467887653224789987532-1024653222111001000243200025412455
Q T0527 31 AMYLSPHFKKIMGYEDHEL-PDEITGHRESIHPDDRARVLAALKA-HLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNS 108 (142)
Q Consensus 31 ~~~~n~~~~~l~G~~~~~~-~~~~~~~~~~ihpdd~~~~~~~~~~-~~~~~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~ 108 (142)
+++||+++++++||+++++ ......|.+++||||++.+.+.+.. +..++.++..++|+++++|+++|+..++.+++|+
T Consensus 1 ~~~~s~~~~~i~Gy~~~e~~~~~~~~~~~~ihpeD~~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~wv~~~~~~~~d~ 80 (91)
T PF08447_consen 1 IVYVSDAFYEILGYSPEELGKSSPDTWFDLIHPEDRERVRQAIERASLRNGEPFSFEYRIRTKDGSYRWVHSRGRPIRDE 80 (91)
T ss_dssp EEEE-THHHHHHT--HHHHTCB-HHHGGGGBGHHHHHHHHHHHHHHHHHCTTCEEEEEEEEGTTSTEEEEEEEEEEEETT
T ss_pred CEEEEHHHHHHHCCCHHHHCCCCHHHHHHEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf 99980799998799989984677778976279124999999987543034552359999997999899999999999999
Q ss_pred CCEEEEEEEEE
Q ss_conf 35036777778
Q T0527 109 AGEPYRMVGWI 119 (142)
Q Consensus 109 ~g~~~~~~g~~ 119 (142)
+|++..++|++
T Consensus 81 ~g~~~~~~G~~ 91 (91)
T PF08447_consen 81 NGKPVRLVGVN 91 (91)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCEEEEEEEC
T ss_conf 99999999989
No 2
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1ll8_A 1wa9_B 3gec_A 1v9z_B 1s67_U 1vb6_A 1s66_L 1v9y_B 3b33_A 2w0n_A ....
Probab=99.62 E-value=1e-15 Score=107.34 Aligned_cols=112 Identities=23% Similarity=0.467 Sum_probs=96.8
Q ss_pred HHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf 99999987068279998079898998658998637998796431246788765322478998753210246-53222111
Q T0527 9 ERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR-DTYDVEYR 87 (142)
Q Consensus 9 ~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~-~~~~~e~r 87 (142)
|+|+.++++++++++.+|.+|.++++|++++++||++++++.++. +.++++|++.......+...+..+ .....+.+
T Consensus 1 e~~~~ii~~~~~~i~v~d~~g~I~~~N~a~~~l~g~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (113)
T PF00989_consen 1 ERFRAIIESSPDGIFVVDADGRILYVNSAAEELFGYSPEELIGKS--IFDLFHPDDREEFRDQLSQLLQQGESSESFEVR 78 (113)
T ss_dssp HHHHHHHHTTSSEEEEEETTSBEEEETHHHHHHCTS-HHHHTTSB--GGGGCSTTTHHHHHHHHHHHHHHTC-BEEEEEE
T ss_pred CHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 978999773844299995959899998899998795958847996--999458523667999999999838983468999
Q ss_pred EEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEH
Q ss_conf 00100024320002541245535036777778817
Q T0527 88 VRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDV 122 (142)
Q Consensus 88 i~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DI 122 (142)
+..++|+.+|+.++.+|+.+.+|++.+++++++||
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 79 FNLRDGSIIWIEVSASPIRDEDGEIIGIIGIFRDI 113 (113)
T ss_dssp EEESTSCEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEECCCCEEEEEEEEEEEEECCCCEEEEEEEEECC
T ss_conf 99449969999999999991999999999999919
No 3
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3fc7_A 3fg8_F 2r78_D 3bwl_D.
Probab=99.60 E-value=4.7e-16 Score=109.24 Aligned_cols=110 Identities=25% Similarity=0.448 Sum_probs=98.3
Q ss_pred HHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
Q ss_conf 87068279998079898998658998637998796431246788765322478998753210246532221110010002
Q T0527 15 VSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGD 94 (142)
Q Consensus 15 ~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~ 94 (142)
++++|++++.+|.++.++++|+++++++|++++++.+.. +.+++++++.+.+...+..++.++.+...+..+.. +|+
T Consensus 1 l~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 77 (110)
T PF08448_consen 1 LDNIPDGIFILDPDGRIIYANRAFEDLFGYSPEELLGKP--LWELFPPEDREDFQAALRQALEGGKPVQFEEEIHR-DGE 77 (110)
T ss_dssp HHHSSSEEEEEETT-BEEEE-HHHHHHHT--HHHHTT-B--GGGTSCCHHHHHHHHHHHHHHHT-EEEEEEEEESS----
T ss_pred CCCCCHHHEEECCCCEEEEEHHHHHHHHCCCHHHHCCCC--HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCC
T ss_conf 999871528998989599776999988592989985994--47847710002368899998646980899999952-787
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 432000254124553503677777881789999
Q T0527 95 FRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 95 ~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~ 127 (142)
.+|+..+..|++|++|++.+++++++|||++|+
T Consensus 78 ~~~~~~~~~p~~d~~g~~~~~i~~~~DiTe~kr 110 (110)
T PF08448_consen 78 ERWFEVTLSPVRDEDGEVQGVIVIARDITERKR 110 (110)
T ss_dssp EEEEEEEEEEC-CTTTTTCEEEEEEEEETT---
T ss_pred CEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 199999999968799989799999997874319
No 4
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.64 E-value=0.0096 Score=33.14 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCC--EEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf 999999998706827999807989--89986589986379987964312467887653224789987532102465322-
Q T0527 7 SEERFQLAVSGASAGLWDWNPKTG--AMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYD- 83 (142)
Q Consensus 7 se~r~~~~~~~~~~~i~~~d~~~~--~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~- 83 (142)
+++.++.+.. .|++|..++.... ++|.|.+..+|++++-.++.+-+. .....|.++......+..+.+.|-...
T Consensus 30 ~~~~~~~L~~-~p~ail~h~~~~dPvf~yaN~aaL~m~E~tw~~l~~lps--r~tae~~~r~~r~~~l~~v~~qG~~~~y 106 (148)
T PF08670_consen 30 SEELAKALWH-APFAILCHSTKADPVFIYANQAALDMWETTWDELQDLPS--RKTAEEPERKERQSLLDQVMQQGYACLY 106 (148)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCCCEEEECCHHHHHHHCCCHHHHHCCCH--HHCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6899999971-997799847888976876108999997188999846977--6516935089999889999981850078
Q ss_pred CHHHEEECCCCCCCE-EEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 211100100024320-00254124553503677777881
Q T0527 84 VEYRVRTRSGDFRWI-QSRGQALWNSAGEPYRMVGWIMD 121 (142)
Q Consensus 84 ~e~ri~~~~G~~~w~-~~~~~~~~d~~g~~~~~~g~~~D 121 (142)
.=+|| .+.|.-.++ ..++.-+.|++|++.+...++.|
T Consensus 107 ~GIRi-ss~Grrf~ie~A~~W~v~d~~g~~~gqAa~F~n 144 (148)
T PF08670_consen 107 SGIRI-SSMGRRFSIEQAVAWKVLDEDGNYHGQAAMFSN 144 (148)
T ss_pred CEEEE-CCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 85788-289976898026998788578888999999611
No 5
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=95.91 E-value=0.012 Score=32.66 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=74.5
Q ss_pred EEEEEECCCCEE--EECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 799980798989--986589986379987964312467887653224789987532102465322211100100024320
Q T0527 21 GLWDWNPKTGAM--YLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 21 ~i~~~d~~~~~~--~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
.+...+..+... .+-..+++++|++. .|. .+.++..|+.+..+...+..++..+.+.....+....+|.+..+
T Consensus 41 ~ile~~~~~~~r~RLaGt~i~~~~G~d~---tG~--~~~~l~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~ 115 (137)
T PF07310_consen 41 FILEVEDPGRFRYRLAGTRIVELFGRDL---TGR--RLDELFAPEDRERVFRALRAVVDEPCPVRARGRARTEDGRYLRF 115 (137)
T ss_pred EEEEEECCCCEEEEEECHHHHHHHCCCC---CCC--CHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEE
T ss_conf 9999828995799996689999819988---898--97784181669999999999981895299997872489983355
Q ss_pred EEEEEECCCCCCEEEEEEEEE
Q ss_conf 002541245535036777778
Q T0527 99 QSRGQALWNSAGEPYRMVGWI 119 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~ 119 (142)
+.-.-|+.+++|.+..++|++
T Consensus 116 e~l~LPL~~~~g~v~~ilG~l 136 (137)
T PF07310_consen 116 ERLLLPLRDDDGEVDRILGAL 136 (137)
T ss_pred EEEECCCCCCCCCCCEEEEEC
T ss_conf 689723588999806797723
No 6
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=95.58 E-value=0.011 Score=32.86 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=45.0
Q ss_pred CCCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 65322211100100024320002541245535036777778817899999999999
Q T0527 79 RDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRV 134 (142)
Q Consensus 79 ~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k~~e~~L~~ 134 (142)
...+-..|.-+.++|+ -++.+..+++|++|+++++.++..|+|....+...|.|
T Consensus 65 ~~~~~~~Y~~~~~dGr--~lkSsT~~ird~~g~~iG~LCIN~D~s~~~~~~~~L~~ 118 (118)
T PF08348_consen 65 KEDDIVNYKTRTKDGR--TLKSSTIFIRDENGKPIGALCINFDISALEQAQKLLDQ 118 (118)
T ss_pred CCCCCCCEEEECCCCC--EEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHCC
T ss_conf 6861446056789998--98999999999999999999997576789999998539
No 7
>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0007600 sensory perception, 0018298 protein-chromophore linkage, 0045449 regulation of transcription; PDB: 1ztu_A 2o9b_A 2o9c_A 2ool_A 2vea_A 3c2w_F.
Probab=56.41 E-value=4.1 Score=18.11 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred EEEEEECC-CCEEEECHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79998079-89899865899863799-87964312467887653224789987532
Q T0527 21 GLWDWNPK-TGAMYLSPHFKKIMGYE-DHELPDEITGHRESIHPDDRARVLAALKA 74 (142)
Q Consensus 21 ~i~~~d~~-~~~~~~n~~~~~l~G~~-~~~~~~~~~~~~~~ihpdd~~~~~~~~~~ 74 (142)
.+..+|.. ..++.+|.+..+++|.+ ++++.|.. +.+++.++....+...+..
T Consensus 17 ~LLa~d~~~~~I~~~SeN~~~~lg~~~~~~llG~~--l~~ll~~~~~~~l~~~~~~ 70 (108)
T PF08446_consen 17 FLLALDPPDLRIIQASENIADLLGIPPPEDLLGRP--LSDLLSPESAHRLREALQS 70 (108)
T ss_dssp -EEEEETTTTEEEEEETTHHHHHSS--HCCHTT-C--HHHHSCCCCHHHHHHHC--
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCCHHHHCCCC--HHHHHCHHHHHHHHHHHHC
T ss_conf 89999878988999866989985873206451898--9998597789999986503
No 8
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111)
Probab=28.66 E-value=15 Score=14.93 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=32.4
Q ss_pred HHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 5321024653222111001000243200025412455350367777788178
Q T0527 72 LKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 72 ~~~~~~~~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
+++.+.+++... -.-..|.|.=+-+...|++|.+|+++..+|++ |+|
T Consensus 37 Le~Vl~~g~v~r----~~p~~G~Y~G~pVvVaPI~~~dg~viaAiGIV-Dlt 83 (84)
T PF09884_consen 37 LEEVLETGEVIR----VTPISGPYKGVPVVVAPIKDEDGKVIAAIGIV-DLT 83 (84)
T ss_pred HHHHHHCCCEEE----ECCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-ECC
T ss_conf 999986395798----45687643793389986665899699998998-715
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR002133 S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP . AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance .; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon compound metabolic process; PDB: 1mxb_A 1fug_A 1p7l_D 1rg9_C 1xra_A 1xrc_A 1mxc_A 1mxa_A 1xrb_A 2obv_A ....
Probab=27.47 E-value=15 Score=14.80 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 6379987964312467-887653224789987532102465322211100100024320002541245535036777778
Q T0527 41 IMGYEDHELPDEITGH-RESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWI 119 (142)
Q Consensus 41 l~G~~~~~~~~~~~~~-~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~ 119 (142)
||||...+.+. ...+ ..+ ..++...+..+...+ .+..+++||+. ..+..++++|+|+++..++
T Consensus 11 mfGYA~~ET~~-~MPl~i~l-----Ah~l~~~l~~~Rk~~-----~~~~L~PD~Ks-----QVtv~Y~~~~~P~~i~tiv 74 (120)
T PF02772_consen 11 MFGYATDETPE-LMPLPIVL-----AHRLLRRLAEVRKNG-----ELPWLRPDGKS-----QVTVEYDENGKPVRIDTIV 74 (120)
T ss_dssp B---EETTSTT-SS-HHHHH-----HHHHHHHHHHHHH---------TTEEEEEEE-----EEEEEEEE-EEEEEEEEEE
T ss_pred EEEEECCCCCC-CCCCHHHH-----HHHHHHHHHHHHHHC-----CCCCCCCCCEE-----EEEEEECCCCEEEEEEEEE
T ss_conf 88777589755-67718999-----999999999977545-----59730788626-----8899862799076787899
Q ss_pred EEH
Q ss_conf 817
Q T0527 120 MDV 122 (142)
Q Consensus 120 ~DI 122 (142)
.-+
T Consensus 75 vS~ 77 (120)
T PF02772_consen 75 VST 77 (120)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 801
No 10
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.39 E-value=19 Score=14.24 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCCC-EEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999998706827999807989-89986589986379987964312467887653224789987532102465322211
Q T0527 8 EERFQLAVSGASAGLWDWNPKTG-AMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEY 86 (142)
Q Consensus 8 e~r~~~~~~~~~~~i~~~d~~~~-~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 86 (142)
.+.|..+-+-....+|.+.+... .+|+|..+..++||..+++.... .+.|- +..+.+..-+... +...-+...
T Consensus 286 RqLFDnLreEnlGmlfVya~qsQr~vFAN~lfKtwtGy~~edfl~~~---~diV~-sGl~qW~~dL~~~--~r~E~sgki 359 (401)
T PF06785_consen 286 RQLFDNLREENLGMLFVYAPQSQRAVFANSLFKTWTGYGAEDFLSDF---SDIVI-SGLNQWERDLRLL--DRAERSGKI 359 (401)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHC---HHHHH-HHHHHHHHHHHHH--HHHHHCCEE
T ss_conf 99975554512866999751037899878888887524699987312---28898-5188998888875--468654727
Q ss_pred HEEECCCCCCCEEEEEEECCCCCCEE-EEEEEEEE
Q ss_conf 10010002432000254124553503-67777788
Q T0527 87 RVRTRSGDFRWIQSRGQALWNSAGEP-YRMVGWIM 120 (142)
Q Consensus 87 ri~~~~G~~~w~~~~~~~~~d~~g~~-~~~~g~~~ 120 (142)
-+.+++|.-+.+..-...+ +.|-. ..++|++.
T Consensus 360 iiKtKn~g~ipf~ycL~il--~kGp~~~hVlgVlY 392 (401)
T PF06785_consen 360 IIKTKNHGQIPFYYCLTIL--NKGPFHNHVLGVLY 392 (401)
T ss_pred EEECCCCCCCEEEEEEEEE--CCCCHHHHHHHHHH
T ss_conf 8871678842058889850--67526777888500
Done!