Query T0527 APC67421.1, Burkholderia thailandensis E264, 142 residues
Match_columns 142
No_of_seqs 125 out of 13326
Neff 9.6
Searched_HMMs 15564
Date Fri May 21 18:04:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0527.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0527.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p97a_ d.110.3.7 (A:) Hypoxia 99.8 1.2E-19 8E-24 130.4 3.9 108 18-127 5-113 (114)
2 d1ew0a_ d.110.3.2 (A:) Histidi 99.8 1.5E-18 9.3E-23 124.3 8.1 118 2-123 9-130 (130)
3 d1n9la_ d.110.3.6 (A:) Putativ 99.7 1.2E-17 7.8E-22 119.0 8.4 105 18-124 2-109 (109)
4 d1bywa_ d.110.3.6 (A:) Erg pot 99.7 4.7E-17 3E-21 115.7 6.3 104 22-125 4-110 (110)
5 d1jnua_ d.110.3.6 (A:) Photore 99.6 3.2E-16 2E-20 110.9 7.8 99 22-122 3-104 (104)
6 d1oj5a_ d.110.3.8 (A:) PAS dom 99.5 6.2E-14 4E-18 97.8 7.4 97 21-119 4-104 (109)
7 d1xj3a1 d.110.3.2 (A:154-259) 99.5 1.1E-13 6.9E-18 96.4 8.3 102 20-125 1-106 (106)
8 d1v9ya_ d.110.3.2 (A:) Direct 99.4 1.9E-13 1.2E-17 95.1 8.5 108 10-121 2-113 (113)
9 d1nwza_ d.110.3.1 (A:) Photoac 99.2 7.5E-12 4.8E-16 85.9 5.4 106 11-122 19-125 (125)
10 d1nwza_ d.110.3.1 (A:) Photoac 99.2 9.2E-12 5.9E-16 85.4 5.3 114 1-121 8-124 (125)
11 d1ll8a_ d.110.3.5 (A:) N-termi 99.2 3.3E-11 2.1E-15 82.3 6.4 105 15-123 4-113 (114)
12 d1mzua_ d.110.3.1 (A:) PYP dom 99.0 1.5E-10 1E-14 78.4 5.1 96 10-108 4-101 (110)
13 d2oola2 d.110.3.9 (A:26-139) S 96.7 0.0015 9.9E-08 38.4 5.1 71 20-94 18-90 (114)
14 d2o9ca2 d.110.3.9 (A:4-130) Ba 77.9 2.3 0.00015 20.2 6.3 50 20-72 36-86 (127)
15 d2veaa3 d.110.3.9 (A:4-130) Ph 77.8 0.32 2.1E-05 25.1 0.7 52 20-73 27-79 (127)
16 d3c2wa3 d.110.3.9 (A:5-117) Ba 56.3 6.8 0.00044 17.5 5.0 71 20-98 23-93 (113)
17 d2p7ja2 d.110.6.2 (A:9-180) GG 49.5 8.8 0.00056 16.9 5.5 109 4-125 53-168 (172)
18 d2cwza1 d.38.1.7 (A:1-138) Hyp 47.9 9.3 0.0006 16.7 4.6 61 77-141 75-136 (138)
19 d1p0za_ d.110.6.1 (A:) Sensor 42.3 11 0.00074 16.2 3.8 89 8-124 38-127 (131)
20 d3by8a1 d.110.6.1 (A:46-178) F 34.7 15 0.00098 15.5 5.9 88 10-126 40-128 (133)
21 d1p0za_ d.110.6.1 (A:) Sensor 30.2 18 0.0012 15.1 3.4 87 10-124 40-127 (131)
22 d1vq8k1 b.39.1.1 (K:1-132) Rib 28.3 9.6 0.00062 16.6 0.9 34 86-119 78-113 (132)
23 d1xhca3 d.87.1.1 (A:290-351) N 27.5 16 0.001 15.4 1.8 31 92-124 27-57 (62)
24 d1vqok1 b.39.1.1 (K:1-132) Rib 27.1 10 0.00067 16.5 0.9 35 85-119 77-113 (132)
25 d1whia_ b.39.1.1 (A:) Ribosoma 20.9 15 0.00099 15.5 0.8 33 86-118 67-101 (122)
26 d3ddja1 d.37.1.1 (A:136-276) U 20.7 28 0.0018 14.0 2.2 28 99-127 103-130 (141)
27 d1smpi_ b.61.2.1 (I:) Metallop 20.4 28 0.0018 14.0 2.6 19 18-36 61-80 (100)
No 1
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76 E-value=1.2e-19 Score=130.39 Aligned_cols=108 Identities=15% Similarity=0.284 Sum_probs=99.2
Q ss_pred CCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCC
Q ss_conf 68279998079898998658998637998796431246788765322478998753210246532221110010002432
Q T0527 18 ASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRW 97 (142)
Q Consensus 18 ~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w 97 (142)
++..++..|++|.++|+|+++.+++||+++++.+. .+.+++||+|.+.+.+.+..+..++..+..+++++++||+++|
T Consensus 5 ~~~fi~r~~~dG~i~~~N~~~~~~~G~~~~el~g~--~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w 82 (114)
T d1p97a_ 5 SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGR--SAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 82 (114)
T ss_dssp CEEEEEEECTTTSCSEECTTHHHHTSSCHHHHTTS--CHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEE
T ss_pred CCEEEEEECCCCCEEEECHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCEE
T ss_conf 67799999799959999879997749971305520--0000000012431100100001111100011000000476517
Q ss_pred EEEEEEECCCC-CCEEEEEEEEEEEHHHHHH
Q ss_conf 00025412455-3503677777881789999
Q T0527 98 IQSRGQALWNS-AGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 98 ~~~~~~~~~d~-~g~~~~~~g~~~DITe~k~ 127 (142)
+..+++|++|+ +|+|..++++.+|||++|+
T Consensus 83 v~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 83 LETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 9999889996899989999999998972423
No 2
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.75 E-value=1.5e-18 Score=124.30 Aligned_cols=118 Identities=11% Similarity=0.095 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 5798999999999870682799980798989986589986379987964312467887653224789987532102465-
Q T0527 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD- 80 (142)
Q Consensus 2 ~aL~~se~r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~- 80 (142)
++|++|+++|+.+++++|+|++..|.+|.+++||+++++|+||+++++.+.. +..++++++.......+......+.
T Consensus 9 ~~l~~~e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T d1ew0a_ 9 DVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQN--LRILMPEPYRHEHDGYLQRYMATGEK 86 (130)
T ss_dssp HHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTTGGGHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999971977299990896499878887775169988962875--22333310267788999999971887
Q ss_pred ---CCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf ---3222111001000243200025412455350367777788178
Q T0527 81 ---TYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 81 ---~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
.+..++.+.++||..+|+..+..++.+.++. .++++++|||
T Consensus 87 ~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~~--~~~~i~rDIT 130 (130)
T d1ew0a_ 87 RIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGER--FFTGFIRDLT 130 (130)
T ss_dssp SSTTSCEEEEEECTTSCEEEEEEEEEEEEETTEE--EEEEEEEECC
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEEEEECCEE--EEEEEEEECC
T ss_conf 5444101588985899799999999999979938--9999999787
No 3
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.71 E-value=1.2e-17 Score=119.03 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=92.5
Q ss_pred CCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
Q ss_conf 682799980---79898998658998637998796431246788765322478998753210246532221110010002
Q T0527 18 ASAGLWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGD 94 (142)
Q Consensus 18 ~~~~i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~ 94 (142)
.++++.+.| +++.++|+|+++++++||+++++.|.. +..+.+|++.+...+.+..++..+.+++.|++++++||+
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~ 79 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGT 79 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCE
T ss_conf 665699995989989699995899998886999985873--003113557877842234576539850312788706883
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 432000254124553503677777881789
Q T0527 95 FRWIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 95 ~~w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
.+|+..+..|++|++|++.+++|+++|||.
T Consensus 80 ~~w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 80 PFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 999998998899999999999999997799
No 4
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=4.7e-17 Score=115.68 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=87.5
Q ss_pred EEEEEC---CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 999807---98989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 22 LWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 22 i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
.++.|+ +..++|+|+++++|+||+.+++.|....+.-+.+|++.......+..++.++.++..+++.++++|+.+|+
T Consensus 4 f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~ 83 (110)
T d1bywa_ 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLC 83 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred EEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCCCCCEEEHEECCCCCCCCHHHCCCCCCCCEEEEEECCCCEEEE
T ss_conf 99975989999899994899998599888953367431121010000000001000000121111100022013220112
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 002541245535036777778817899
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
..+++|++|++|++.+++++++|||||
T Consensus 84 ~~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 84 LVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 336778998999999999999978899
No 5
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.63 E-value=3.2e-16 Score=110.92 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=90.2
Q ss_pred EEEEE---CCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 99980---798989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 22 LWDWN---PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 22 i~~~d---~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
+.+.| +++.++|+|+++++++||+++++.|.. +..+.+|++.+...+.+..++.++.++..|+++++++|+.+|+
T Consensus 3 fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~ 80 (104)
T d1jnua_ 3 FVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN--CRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWN 80 (104)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEE
T ss_pred EEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCC--CEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEE
T ss_conf 99985999989899996899998886989977862--1001011001677764235652596357689999605542898
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEH
Q ss_conf 002541245535036777778817
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDV 122 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DI 122 (142)
..+..|++|++|++.+++|+++||
T Consensus 81 ~~~~~pi~d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 81 LFHLQVMRDENGDVQYFIGVQQEM 104 (104)
T ss_dssp EEEEEEECTTTSSCCEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEEECC
T ss_conf 878888999999999999999829
No 6
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47 E-value=6.2e-14 Score=97.80 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=80.6
Q ss_pred EEEEEECCCCEEEECHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCHHHEEECCCCCCC
Q ss_conf 7999807989899865899863799-8796431246788765322478--998753210246532221110010002432
Q T0527 21 GLWDWNPKTGAMYLSPHFKKIMGYE-DHELPDEITGHRESIHPDDRAR--VLAALKAHLEHRDTYDVEYRVRTRSGDFRW 97 (142)
Q Consensus 21 ~i~~~d~~~~~~~~n~~~~~l~G~~-~~~~~~~~~~~~~~ihpdd~~~--~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w 97 (142)
.+...|++|.++++|+++.+++||. ++++.|. .+.+++||||++. ....+..+...|.....+||++++||.|+|
T Consensus 4 F~trh~~~g~~~~vd~~~~~~~gy~~~eelig~--s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vW 81 (109)
T d1oj5a_ 4 FMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRK--CIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLS 81 (109)
T ss_dssp EEEEECTTCCEEEEECHHHHTTCCSCHHHHHHH--HHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEE
T ss_pred EEEEECCCCEEEEECHHHHHHHHCCCHHHHCCC--CHHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEE
T ss_conf 899987996299998789667533787898597--598849801332777667899887302223055644023683899
Q ss_pred EEEEEEECCCCCC-EEEEEEEEE
Q ss_conf 0002541245535-036777778
Q T0527 98 IQSRGQALWNSAG-EPYRMVGWI 119 (142)
Q Consensus 98 ~~~~~~~~~d~~g-~~~~~~g~~ 119 (142)
++.++++++++.| ++..++|+-
T Consensus 82 v~t~~~~~~~~~~~~~~~Ii~~h 104 (109)
T d1oj5a_ 82 AHTRCKLCYPQSPDMQPFIMGIH 104 (109)
T ss_dssp EEEEEEEECC----CCCEEEEEE
T ss_pred EEEEEEEEECCCCCCCCEEEEEE
T ss_conf 99999999999999635899999
No 7
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.46 E-value=1.1e-13 Score=96.44 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=81.8
Q ss_pred CEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCHHHEEECCCCC
Q ss_conf 27999807989899865899863799879643124678876532247899875321024----65322211100100024
Q T0527 20 AGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEH----RDTYDVEYRVRTRSGDF 95 (142)
Q Consensus 20 ~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~----~~~~~~e~ri~~~~G~~ 95 (142)
+|++.+|.+|+++++|+++++|+||+.+++.+.. +..+++|.+.......+.....+ ...+..+++++++||..
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 78 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQN--VNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTT 78 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCE
T ss_pred CEEEEECCCCCEEEECHHHHHHHHHCHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEE
T ss_conf 9899997999399773899987643418661897--42242212100011222344430232111111000133014369
Q ss_pred CCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 320002541245535036777778817899
Q T0527 96 RWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 96 ~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
+|+..+.+|+.++++. .++++++||||.
T Consensus 79 ~~v~~~~~~~~~~~~~--~~~~~~~DITE~ 106 (106)
T d1xj3a1 79 FPMHLSIGEMQSGGEP--YFTGFVRDLTEH 106 (106)
T ss_dssp EEEEEEEEEEEETTEE--EEEEEEEECHHH
T ss_pred EEEEEEEEEEEECCEE--EEEEEEEECCCC
T ss_conf 9888999999979937--999999968898
No 8
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.44 E-value=1.9e-13 Score=95.06 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=83.2
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCH
Q ss_conf 9999987068279998079898998658998637998796431246788765322478998753210----246532221
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHL----EHRDTYDVE 85 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~----~~~~~~~~e 85 (142)
.|..+++++++|++.+|.++.++++|+++++++||+++++.+... ..++++.+.......+.... ........+
T Consensus 2 ~~~~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 2 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNI--DMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp CHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBG--GGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCE--ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 789998708471899929999999861686652013666537520--003321111110000011001243200110002
Q ss_pred HHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 110010002432000254124553503677777881
Q T0527 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMD 121 (142)
Q Consensus 86 ~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~D 121 (142)
..+++++|+.+|+..+..|+.+++|. . ++|+++|
T Consensus 80 ~~~~~~dG~~~~v~~~~~~i~~~~~~-~-~~~v~rD 113 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFALSKVSAEGKV-Y-YLALVRD 113 (113)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEE-E-EEEEEEC
T ss_pred EEECCCCCEEEEEEEEEEEEEECCEE-E-EEEEEEC
T ss_conf 44102454169999999999989908-9-9999999
No 9
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.21 E-value=7.5e-12 Score=85.89 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCHHHEE
Q ss_conf 99998706827999807989899865899863799879643124678876532-24789987532102465322211100
Q T0527 11 FQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPD-DRARVLAALKAHLEHRDTYDVEYRVR 89 (142)
Q Consensus 11 ~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpd-d~~~~~~~~~~~~~~~~~~~~e~ri~ 89 (142)
+..+++++|+|++.+|.+|.++++|+++++++||+++++.|+. +.++++|+ +.+.+...+..++.++.....+-...
T Consensus 19 ~d~~ld~~p~gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~--~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (125)
T d1nwza_ 19 DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKN--FFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF 96 (125)
T ss_dssp CHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCHHHHHHEEEECEEEEECCCCCEEEEEEE
T ss_conf 9999857875299990899899981799976245627663997--77726956661002000000210477545888874
Q ss_pred ECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEH
Q ss_conf 100024320002541245535036777778817
Q T0527 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDV 122 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DI 122 (142)
+++|..+|+.++..+..+ |..+ ...++||
T Consensus 97 ~~~G~~~~v~v~l~~~~~--g~~~--~v~V~di 125 (125)
T d1nwza_ 97 DYQMTPTKVKVHMKKALS--GDSY--WVFVKRV 125 (125)
T ss_dssp CTTSCCEEEEEEEEECSS--SSEE--EEEEEEC
T ss_pred CCCCCEEEEEEEEEEECC--CCEE--EEEEEEC
T ss_conf 037947999999999469--9989--9999989
No 10
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} SCOP: d1ot6a_ d1f98a_ d1f9ia_ d2d01a1 d1koua_ d1ugua_ d1gsva_ d1gswa_ d1gsxa_ d1odva_ d1otda_ d1mzub_ d1mzua_
Probab=99.20 E-value=9.2e-12 Score=85.41 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=84.3
Q ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 95798999999-9998706827999807989899865899863799879643124678876532-247899875321024
Q T0527 1 SNALSASEERF-QLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPD-DRARVLAALKAHLEH 78 (142)
Q Consensus 1 ~~aL~~se~r~-~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpd-d~~~~~~~~~~~~~~ 78 (142)
+++|.+.-+++ ..+++++|+|++.+|.+|++++||+++++++||+++++.|+. +...++|+ ..+.+...+.+++.+
T Consensus 8 ~~~~~~~l~~l~~~~ld~~p~gii~lD~dGri~~~N~a~~~l~G~~~ee~iGk~--~~~~~~P~~~~~~~~~~~~~~~~~ 85 (125)
T d1nwza_ 8 SEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKN--FFKDVAPCTDSPEFYGKFKEGVAS 85 (125)
T ss_dssp CTTHHHHTTTCCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHHCCC--HHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 088999999999999862781268787998689875589986425825760664--124118733568999999999972
Q ss_pred CCC-CCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 653-2221110010002432000254124553503677777881
Q T0527 79 RDT-YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMD 121 (142)
Q Consensus 79 ~~~-~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~D 121 (142)
|.. ...++.+ .++|..+|+.++..+.. +|... ++ ++++
T Consensus 86 G~~~~~~e~~~-~~~g~~~~V~v~l~~~~--dg~~~-~v-~v~~ 124 (125)
T d1nwza_ 86 GNLNTMFEYTF-DYQMTPTKVKVHMKKAL--SGDSY-WV-FVKR 124 (125)
T ss_dssp TCCEEEEEEEE-CTTSCCEEEEEEEEECS--SSSEE-EE-EEEE
T ss_pred CCCEEEEEEEE-CCCCCEEEEEEEEEECC--CCCEE-EE-EEEE
T ss_conf 98214687887-36992378999999738--99847-99-9773
No 11
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.15 E-value=3.3e-11 Score=82.25 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHCCCEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHEE
Q ss_conf 8706827999807-98989986589986379987964312467887653224789987532102465----322211100
Q T0527 15 VSGASAGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD----TYDVEYRVR 89 (142)
Q Consensus 15 ~~~~~~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~----~~~~e~ri~ 89 (142)
-+.++.+|+.+|. +|.++++|++++++|||+.+++.+.. +.++++|++...+...+.....++. .+..++.++
T Consensus 4 ~~~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (114)
T d1ll8a_ 4 DPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQK--LTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp STTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSB--GGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred CHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
T ss_conf 0100968999999999999977899975468978983997--22142810499999999999856777310036788888
Q ss_pred ECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf 1000243200025412455350367777788178
Q T0527 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVT 123 (142)
Q Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT 123 (142)
+++|+.+|+.++.+++.. +|++. ++++++||+
T Consensus 82 ~~~G~~~pvevs~~~i~~-~~~~~-~l~vi~dV~ 113 (114)
T d1ll8a_ 82 SRSGEKIPVSVWMKRMRQ-ERRLC-CVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBS-SSSBE-EEEEEEECC
T ss_pred CCCCCEEEEEEEEEEEEE-CCEEE-EEEEEEECC
T ss_conf 049919999999999999-99679-999999775
No 12
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.02 E-value=1.5e-10 Score=78.38 Aligned_cols=96 Identities=6% Similarity=-0.086 Sum_probs=77.1
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC-CCCHHH
Q ss_conf 99999870682799980798989986589986379987964312467887653-2247899875321024653-222111
Q T0527 10 RFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHP-DDRARVLAALKAHLEHRDT-YDVEYR 87 (142)
Q Consensus 10 r~~~~~~~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihp-dd~~~~~~~~~~~~~~~~~-~~~e~r 87 (142)
.+.++++++|+|++.+|.+|.+++||+++++|+||+++++.|.. +.+.++| +..+.+...+.+.+.+|.. ...++.
T Consensus 4 ~~~A~ld~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~--~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (110)
T d1mzua_ 4 MGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRN--FFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 81 (110)
T ss_dssp --CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 77999847893799996999999857789998867999985997--8996498646689999999998655657413799
Q ss_pred EEECCCCCCCEEEEEEECCCC
Q ss_conf 001000243200025412455
Q T0527 88 VRTRSGDFRWIQSRGQALWNS 108 (142)
Q Consensus 88 i~~~~G~~~w~~~~~~~~~d~ 108 (142)
.+++|..++++++..+..+.
T Consensus 82 -l~~~G~~~~v~v~~~~~~~~ 101 (110)
T d1mzua_ 82 -FDFQMAPVRVQIRMQNAGVP 101 (110)
T ss_dssp -EECSSCEEEEEEEEEECSST
T ss_pred -EECCCCEEEEEEEEEEECCC
T ss_conf -93079638999999993479
No 13
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=96.66 E-value=0.0015 Score=38.36 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=50.0
Q ss_pred CEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHEEECCCC
Q ss_conf 27999807-98989986589986379987964312467887653224789987532102-46532221110010002
Q T0527 20 AGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLE-HRDTYDVEYRVRTRSGD 94 (142)
Q Consensus 20 ~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~-~~~~~~~e~ri~~~~G~ 94 (142)
..+...|. ++.++++|++..+++|++++++.|. .+.+++||+|...+.+.+..... ...+ ..+++..++|.
T Consensus 18 G~Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~--~l~dll~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~ 90 (114)
T d2oola2 18 GYLFVVSETDLRIASVSANVEDLLRQPPASLLNV--PIAHYLTAASAARLTHALHGGDPAAINP--IRLDVVTPDGE 90 (114)
T ss_dssp SEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTC--BGGGGBCHHHHHHHHHHHCC----CCCS--EEEEEEETTEE
T ss_pred CEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCCCCCCC--EEEEEECCCCC
T ss_conf 1899998899989999488899848892887599--8899689989999999874279444787--89997527998
No 14
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=77.89 E-value=2.3 Score=20.16 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=34.5
Q ss_pred CEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999807-989899865899863799879643124678876532247899875
Q T0527 20 AGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAAL 72 (142)
Q Consensus 20 ~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~ 72 (142)
..+..+|. +..+.++|.++.+++|++++++.|.. +.+++ +++...+...+
T Consensus 36 G~LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~--l~~ll-~~~~~~~~~~~ 86 (127)
T d2o9ca2 36 GALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQT--LAALL-PEQWPALQAAL 86 (127)
T ss_dssp SEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCB--HHHHC-TTTHHHHHHHS
T ss_pred EEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHHHC-CHHHHHHHHHH
T ss_conf 48999988999799987898998387968984999--89988-88899999986
No 15
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=77.78 E-value=0.32 Score=25.08 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=37.2
Q ss_pred CEEEEEEC-CCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999807-9898998658998637998796431246788765322478998753
Q T0527 20 AGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALK 73 (142)
Q Consensus 20 ~~i~~~d~-~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~ 73 (142)
.++..+|. +..+..+|.++.+++|++++++.|.. +.+++.++....++..+.
T Consensus 27 G~LLald~~~~~I~~aS~N~~~~lG~~~~~lLG~~--l~~ll~~~~~~~l~~~l~ 79 (127)
T d2veaa3 27 GLVVVLQEPDLTISQISANCTGILGRSPEDLLGRT--LGEVFDSFQIDPIQSRLT 79 (127)
T ss_dssp SEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTT--TTTTSBCC--------CC
T ss_pred EEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHH
T ss_conf 68999988999899985798988485969983999--889879899999999864
No 16
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=56.27 E-value=6.8 Score=17.52 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=39.5
Q ss_pred CEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCE
Q ss_conf 2799980798989986589986379987964312467887653224789987532102465322211100100024320
Q T0527 20 AGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWI 98 (142)
Q Consensus 20 ~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri~~~~G~~~w~ 98 (142)
.++..+|+++.+..+|.++.+++|++++.+ +.. +.+.+-++.. ..++....+...+....++. .+|...|+
T Consensus 23 G~LLald~~~~I~~~S~N~~~~lg~~~~~L-~~~--~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~-~~~~~~d~ 93 (113)
T d3c2wa3 23 GALVTLRADGMVLAASENIQALLGFVASPG-SYL--TQEQVGPEVL----RMLEEGLTGNGPWSNSVETR-IGEHLFDV 93 (113)
T ss_dssp EEEEEECTTSBEEEEETTHHHHTSSCCCTT-CBC--CHHHHHHHHH----HHHHHHHSCSSCCCCEEEEC-CSSSCEEE
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCHHHH-CCC--HHHHHCHHHH----HHHHHHHHCCCCCEEEEEEC-CCCEEEEE
T ss_conf 699998699709998179898839885674-542--7877587999----99986630289835678963-69937999
No 17
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=49.46 E-value=8.8 Score=16.88 Aligned_cols=109 Identities=7% Similarity=-0.068 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHCCCE--EEEEECCCCEEEE-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 989999999998706827--9998079898998-6589986379987964312467887653224789987532102465
Q T0527 4 LSASEERFQLAVSGASAG--LWDWNPKTGAMYL-SPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRD 80 (142)
Q Consensus 4 L~~se~r~~~~~~~~~~~--i~~~d~~~~~~~~-n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~ 80 (142)
+..-+..|..++...|.. ++..|.+|..+.- +...... ..... .......+++.+.++... ..+.
T Consensus 53 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~~~~~~~~~~~~-------~~~~~---~~~~~~~~r~yf~~a~~~--~~~~ 120 (172)
T d2p7ja2 53 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTS-------IAGPS---LILRDKSAREYFKYAQSL--DNEQ 120 (172)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECTTSBEEEEEEEETTTT-------EEEEC---CCCCBCTTSHHHHHHHTS--CTTC
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCC-------CCCCC---CCCCCCHHHHHHHHHHHC--CCCE
T ss_conf 89999999998640033406999999999999984578875-------22675---211462000999999848--9980
Q ss_pred CCCCHHHEEECCCCC----CCEEEEEEECCCCCCEEEEEEEEEEEHHHH
Q ss_conf 322211100100024----320002541245535036777778817899
Q T0527 81 TYDVEYRVRTRSGDF----RWIQSRGQALWNSAGEPYRMVGWIMDVTDR 125 (142)
Q Consensus 81 ~~~~e~ri~~~~G~~----~w~~~~~~~~~d~~g~~~~~~g~~~DITe~ 125 (142)
.+--...+-..+|.+ .++..-+.|++ .+|++.|++.+-.|++..
T Consensus 121 ~~~s~~~~~~~~g~~~~~~~p~i~~a~Pv~-~~g~~~Gvlvi~i~l~~l 168 (172)
T d2p7ja2 121 ISAWGIELERDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYL 168 (172)
T ss_dssp CEEEEEEECEETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHH
T ss_pred EEEECCCCCCCCCCCEECCCEEEEEEEEEC-CCCEEEEEEEEEECHHHH
T ss_conf 999445024444320121770899999875-799899999999869999
No 18
>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus thermophilus [TaxId: 274]}
Probab=47.85 E-value=9.3 Score=16.73 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCEEEEEEEE-EEEHHHHHHHHHHHHHHHHHHHC
Q ss_conf 246532221110010002432000254124553503677777-88178999999999999999842
Q T0527 77 EHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGW-IMDVTDRKRDEDALRVSREELRR 141 (142)
Q Consensus 77 ~~~~~~~~e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~-~~DITe~k~~e~~L~~~~~~l~~ 141 (142)
.-|....++.++...++...++.+.+ +|++|+++ ..|. .+=|-++.+.+..+.+..+++++
T Consensus 75 ~iG~~V~~~a~v~~v~~~~~~~~v~~---~d~~g~lV-~~g~~~r~iv~~~~~~~r~~~~~~~~~~ 136 (138)
T d2cwza1 75 LPGMRVRVVARHEKTEGNRVYARVEA---YNELGDLI-GVGRTEQVILPKAKVEALFRRLKERWEA 136 (138)
T ss_dssp CTTCEEEEEEEEEEEETTEEEEEEEE---EETTCCEE-EEEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEE---EECCCCEE-EEEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 78968999999999679799999999---98799799-9999999992399999999988987761
No 19
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]} SCOP: d1ojga_
Probab=42.25 E-value=11 Score=16.22 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999999987068-2799980798989986589986379987964312467887653224789987532102465322211
Q T0527 8 EERFQLAVSGAS-AGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEY 86 (142)
Q Consensus 8 e~r~~~~~~~~~-~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 86 (142)
+..++.+.+.++ ..++.+|++|.++.-+.. ... |. .+. +++. +..++.++..+..
T Consensus 38 ~~~l~~~~~~~~~~~i~i~d~~G~via~s~~--~~i--------G~--~~~------~~~~----~~~a~~g~~~~~~-- 93 (131)
T d1p0za_ 38 KALIDPMRSFSDATYITVGDASGQRLYHVNP--DEI--------GK--SME------GGDS----DEALINAKSYVSV-- 93 (131)
T ss_dssp HHHHHHHHHHSCCSEEEEEETTSBEEECSSG--GGT--------TS--BCC------SSCC----HHHHHHCCCEEEE--
T ss_pred HHHHHHHHHHCCCEEEEEECCCCEEEEEECC--CCC--------CC--CCC------CCCH----HHHHHCCCCEEEE--
T ss_conf 8999999971396489998389758996460--015--------88--766------6501----5666216745899--
Q ss_pred HEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 10010002432000254124553503677777881789
Q T0527 87 RVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 87 ri~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
-...+. .......|++|++|++++++.+..++.+
T Consensus 94 --~~gt~~--~~~~~~~PV~~~~G~iiGvV~v~~~l~~ 127 (131)
T d1p0za_ 94 --RKGSLG--SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp --EEETTE--EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred --EECCCC--CEEEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf --843775--3578997778499969999998766112
No 20
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=34.66 E-value=15 Score=15.52 Aligned_cols=88 Identities=5% Similarity=-0.069 Sum_probs=48.2
Q ss_pred HHHHHHH-HCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHE
Q ss_conf 9999987-068279998079898998658998637998796431246788765322478998753210246532221110
Q T0527 10 RFQLAVS-GASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRV 88 (142)
Q Consensus 10 r~~~~~~-~~~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri 88 (142)
.++.+.+ +.-+.++.+|.+|..+.-+. +.. .+.. ++.|+ +..+++++..+..
T Consensus 40 ~~e~~~~~~ga~~i~v~D~~G~~~a~~~---------~~~-ig~~-----~~g~~--------~~~Al~G~~~~~~---- 92 (133)
T d3by8a1 40 IAEAVRKRNDLLFIVVTDMQSLRYSHPE---------AQR-IGQP-----FKGDD--------ILKALNGEENVAI---- 92 (133)
T ss_dssp HHHHHHHHTTCSEEEEEETTCBBSCCSS---------GGG-TTSB-----CCCGG--------GTGGGGTCCEEEE----
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECC---------HHH-CCCC-----CCCCC--------HHHHHCCCCEEEE----
T ss_conf 9999998709709999859964999488---------231-5984-----23875--------6677578836999----
Q ss_pred EECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHHHH
Q ss_conf 01000243200025412455350367777788178999
Q T0527 89 RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRK 126 (142)
Q Consensus 89 ~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe~k 126 (142)
..|....-.....|+++++|++++++.+..+++...
T Consensus 93 --~~gt~g~~~~~~~Pv~~~~G~viGvV~Vg~~~~~ie 128 (133)
T d3by8a1 93 --NRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVT 128 (133)
T ss_dssp --ECSSSSCEEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred --EEECCCEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
T ss_conf --985484189999732978992999999998889989
No 21
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=30.20 E-value=18 Score=15.08 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=44.3
Q ss_pred HHHHHHHHC-CCEEEEEECCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHE
Q ss_conf 999998706-8279998079898998658998637998796431246788765322478998753210246532221110
Q T0527 10 RFQLAVSGA-SAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRV 88 (142)
Q Consensus 10 r~~~~~~~~-~~~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ri 88 (142)
.++.+.+.. -..++.+|.+|.++.-+.. ...| .. +..++.. ..+..++..+..
T Consensus 40 ~~~~l~~~~~~~~i~v~D~~G~v~a~~~~--~~iG--------~~-----~~~~~~~-------~a~~~g~~~~~~---- 93 (131)
T d1p0za_ 40 LIDPMRSFSDATYITVGDASGQRLYHVNP--DEIG--------KS-----MEGGDSD-------EALINAKSYVSV---- 93 (131)
T ss_dssp HHHHHHHHSCCSEEEEEETTSBEEECSSG--GGTT--------SB-----CCSSCCH-------HHHHHCCCEEEE----
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEECCCH--HHCC--------CC-----CCCCCHH-------HHHHCCCCEEEE----
T ss_conf 99999997298289999799878982684--5458--------76-----5554127-------899718868999----
Q ss_pred EECCCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 010002432000254124553503677777881789
Q T0527 89 RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 89 ~~~~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
....+. .......|+++++|++++++.+..++.+
T Consensus 94 ~~g~~g--~~~~~~~PI~~~~G~viGvV~Vg~~l~~ 127 (131)
T d1p0za_ 94 RKGSLG--SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEETTE--EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EECCCC--CEEEEEEEEECCCCCEEEEEEEEEEHHH
T ss_conf 961786--1899999889789969999999988688
No 22
>d1vq8k1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} SCOP: d1jj2j_ d1s1ir_
Probab=28.27 E-value=9.6 Score=16.65 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.6
Q ss_pred HHEEECCCCCCCEEEEEEECCCCCCEEEE--EEEEE
Q ss_conf 11001000243200025412455350367--77778
Q T0527 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGWI 119 (142)
Q Consensus 86 ~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g~~ 119 (142)
..++++||.++-+..++.++.+++|+|.+ +.|.+
T Consensus 78 k~~~R~dGs~i~FddNa~Vli~~~g~P~GTRI~GpV 113 (132)
T d1vq8k1 78 KPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPI 113 (132)
T ss_dssp SCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEE
T ss_pred CCEECCCCCEEEECCCEEEEECCCCCEEEEEECCCC
T ss_conf 761688997887678238998799976345651740
No 23
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=27.51 E-value=16 Score=15.45 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf 002432000254124553503677777881789
Q T0527 92 SGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTD 124 (142)
Q Consensus 92 ~G~~~w~~~~~~~~~d~~g~~~~~~g~~~DITe 124 (142)
.|+-+|+......++ .+|++++++ ++-||-.
T Consensus 27 ~g~G~Wid~~tK~Fy-~d~KiiGaV-V~~Dirk 57 (62)
T d1xhca3 27 KGEGKWIEDNTKVFY-ENGKIIGAV-VFNDIRK 57 (62)
T ss_dssp SSCEEEEETTEEEEC------CEEE-EESCHHH
T ss_pred CCCCEEECCCCEEEE-ECCCEEEEE-EEHHHHH
T ss_conf 676112021132666-679588999-9634334
No 24
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=27.09 E-value=10 Score=16.46 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHEEECCCCCCCEEEEEEECCCCCCEEEE--EEEEE
Q ss_conf 111001000243200025412455350367--77778
Q T0527 85 EYRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGWI 119 (142)
Q Consensus 85 e~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g~~ 119 (142)
-..++++||.++-+..++.++.|++|+|.+ +.|.+
T Consensus 77 kk~~~R~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV 113 (132)
T d1vqok1 77 RKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPI 113 (132)
T ss_dssp SSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSCB
T ss_pred CCCEECCCCCEEECCCCEEEEECCCCCEEEEEEECCH
T ss_conf 6747879999898179779999899999260795647
No 25
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.90 E-value=15 Score=15.48 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHEEECCCCCCCEEEEEEECCCCCCEEEE--EEEE
Q ss_conf 11001000243200025412455350367--7777
Q T0527 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGW 118 (142)
Q Consensus 86 ~ri~~~~G~~~w~~~~~~~~~d~~g~~~~--~~g~ 118 (142)
..++++||.++-+..++.++.+++|+|.+ +.|.
T Consensus 67 k~~~R~dG~~i~F~~Na~VLl~~~~~P~GTrI~Gp 101 (122)
T d1whia_ 67 RGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGP 101 (122)
T ss_dssp SCEECTTSCEECCSSCEEEEECTTSCBSSSCBCSC
T ss_pred EEEECCCCCEEEECCCEEEEECCCCCEEEEEEECC
T ss_conf 31431688668858987999979999912369504
No 26
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.65 E-value=28 Score=14.03 Aligned_cols=28 Identities=7% Similarity=-0.070 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 00254124553503677777881789999
Q T0527 99 QSRGQALWNSAGEPYRMVGWIMDVTDRKR 127 (142)
Q Consensus 99 ~~~~~~~~d~~g~~~~~~g~~~DITe~k~ 127 (142)
.....|+-|++|+++|++ +..||-+.-.
T Consensus 103 ~~~~l~Vvd~~~~~iGiI-t~~Dil~~l~ 130 (141)
T d3ddja1 103 RIGSLLILNKDNTIRGII-TERDLLIALH 130 (141)
T ss_dssp TCSEEEEECTTSCEEEEE-EHHHHHHHHH
T ss_pred CCCEEEEECCCCEEEEEE-EHHHHHHHHH
T ss_conf 987899984699799999-9999999998
No 27
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=20.42 E-value=28 Score=14.00 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=7.8
Q ss_pred CCCEEEEEECCCCEE-EECH
Q ss_conf 682799980798989-9865
Q T0527 18 ASAGLWDWNPKTGAM-YLSP 36 (142)
Q Consensus 18 ~~~~i~~~d~~~~~~-~~n~ 36 (142)
+|+||+.++.+|..+ |+|.
T Consensus 61 tPDGiaLt~~~Gs~i~ffsR 80 (100)
T d1smpi_ 61 TPDGLTLTQADGSAVAFFSR 80 (100)
T ss_dssp CSSEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEE
T ss_conf 89837775588986876630
Done!