Query T0528 NP_949733.1, Rhodopseudomonas palustris CGA009, 388 residues
Match_columns 388
No_of_seqs 164 out of 4989
Neff 10.5
Searched_HMMs 22458
Date Fri May 21 18:06:22 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0528.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0528.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i09_A Periplasmic branched-ch 100.0 0 0 400.9 40.2 363 16-387 2-369 (375)
2 3i45_A Twin-arginine transloca 100.0 0 0 391.3 40.0 367 15-386 2-380 (387)
3 1pea_A Amidase operon; gene re 100.0 0 0 377.7 38.5 354 15-377 4-366 (385)
4 3hut_A Putative branched-chain 100.0 0 0 355.3 40.3 345 16-370 2-349 (358)
5 3h5l_A Putative branched-chain 100.0 0 0 352.2 34.4 356 12-373 8-399 (419)
6 3lkb_A Probable branched-chain 100.0 0 0 333.0 38.4 341 14-362 3-364 (392)
7 1usg_A Leucine-specific bindin 100.0 0 0 330.6 37.4 340 17-364 1-342 (346)
8 3lop_A Substrate binding perip 100.0 0 0 325.2 34.8 344 15-365 2-355 (364)
9 3eaf_A ABC transporter, substr 100.0 0 0 298.1 31.5 339 16-364 2-363 (391)
10 1jdp_A NPR-C, atrial natriuret 100.0 3.9E-42 0 269.4 35.1 342 13-362 4-382 (441)
11 1dp4_A Atrial natriuretic pept 100.0 7.7E-40 3.4E-44 255.7 32.0 335 18-360 2-383 (435)
12 3h6g_A Glutamate receptor, ion 100.0 1.7E-38 7.7E-43 247.6 34.1 338 16-363 2-368 (395)
13 3ks9_A Mglur1, metabotropic gl 100.0 7E-36 3.1E-40 231.9 36.4 341 17-362 16-461 (496)
14 2e4z_A Metabotropic glutamate 100.0 1.3E-35 5.9E-40 230.3 28.4 344 16-360 14-452 (501)
15 2wjw_A Glutamate receptor 2; t 100.0 6.9E-35 3.1E-39 225.9 30.4 324 17-363 1-359 (388)
16 3kg2_A Glutamate receptor 2; I 100.0 6.7E-35 3E-39 226.0 29.9 324 17-363 1-359 (823)
17 2h4a_A YRAM (HI1655); perplasm 100.0 1E-35 4.5E-40 230.9 20.4 308 20-362 2-313 (325)
18 2e4u_A Metabotropic glutamate 100.0 1.1E-32 4.7E-37 212.8 35.7 343 17-362 13-451 (555)
19 3jpw_A Glutamate [NMDA] recept 99.9 1.5E-25 6.6E-30 169.9 17.3 308 18-362 3-340 (363)
20 2qh8_A Uncharacterized protein 99.2 7.1E-09 3.2E-13 69.8 18.8 170 13-191 3-177 (302)
21 2vk2_A YTFQ, ABC transporter p 99.1 4.7E-07 2.1E-11 58.9 24.2 207 18-240 2-217 (306)
22 8abp_A L-arabinose-binding pro 98.7 1.1E-05 5E-10 50.6 24.8 210 17-241 1-224 (306)
23 3ksm_A ABC-type sugar transpor 98.7 1.3E-05 5.9E-10 50.2 21.0 201 20-238 2-211 (276)
24 2fvy_A D-galactose-binding per 98.6 1.7E-05 7.8E-10 49.5 23.6 207 18-237 2-226 (309)
25 2rjo_A Twin-arginine transloca 98.6 2E-05 9E-10 49.1 22.5 207 16-238 3-221 (332)
26 2h3h_A Sugar ABC transporter, 98.5 4E-05 1.8E-09 47.3 24.3 199 19-238 2-206 (313)
27 3lft_A Uncharacterized protein 98.5 5.4E-05 2.4E-09 46.5 21.6 207 18-241 2-213 (295)
28 1jx6_A LUXP protein; protein-l 98.3 0.00013 6E-09 44.1 24.4 189 15-212 40-234 (342)
29 2ioy_A Periplasmic sugar-bindi 98.3 0.00014 6.1E-09 44.1 22.6 198 20-237 3-206 (283)
30 3l49_A ABC sugar (ribose) tran 98.2 0.00028 1.2E-08 42.2 21.6 201 16-237 3-214 (291)
31 3brs_A Periplasmic binding pro 98.2 0.00029 1.3E-08 42.2 20.5 203 17-237 4-213 (289)
32 3brq_A HTH-type transcriptiona 98.1 0.00029 1.3E-08 42.1 19.0 203 16-239 17-225 (296)
33 3gbv_A Putative LACI-family tr 98.1 0.00036 1.6E-08 41.6 25.0 187 12-212 2-200 (304)
34 2dri_A D-ribose-binding protei 98.1 0.00042 1.9E-08 41.2 22.8 197 20-237 3-205 (271)
35 2iks_A DNA-binding transcripti 98.0 0.0007 3.1E-08 39.8 17.5 201 16-239 18-222 (293)
36 3l6u_A ABC-type sugar transpor 97.9 0.00091 4E-08 39.2 22.5 204 14-238 4-219 (293)
37 3h75_A Periplasmic sugar-bindi 97.8 0.0012 5.2E-08 38.5 24.4 208 19-239 4-230 (350)
38 3gv0_A Transcriptional regulat 97.7 0.0015 6.9E-08 37.8 18.7 205 15-239 5-213 (288)
39 3hcw_A Maltose operon transcri 97.7 0.0018 8.2E-08 37.3 21.5 207 15-239 4-217 (295)
40 3d02_A Putative LACI-type tran 97.7 0.0022 9.6E-08 36.9 25.2 199 19-238 5-213 (303)
41 3g1w_A Sugar ABC transporter; 97.6 0.0025 1.1E-07 36.5 24.1 195 23-237 9-210 (305)
42 2fn9_A Ribose ABC transporter, 97.6 0.0027 1.2E-07 36.3 23.1 198 20-237 4-214 (290)
43 3miz_A Putative transcriptiona 97.2 0.0075 3.3E-07 33.7 15.7 211 7-239 2-222 (301)
44 3g85_A Transcriptional regulat 97.2 0.0082 3.7E-07 33.4 13.7 206 11-239 4-213 (289)
45 3d8u_A PURR transcriptional re 97.2 0.0087 3.9E-07 33.3 20.8 201 17-239 2-206 (275)
46 1byk_A Protein (trehalose oper 97.1 0.01 4.5E-07 32.9 14.9 189 20-238 4-196 (255)
47 3clk_A Transcription regulator 97.1 0.01 4.5E-07 32.9 14.9 202 15-239 5-210 (290)
48 3huu_A Transcription regulator 97.0 0.013 5.6E-07 32.3 17.4 203 15-239 19-227 (305)
49 1tjy_A Sugar transport protein 97.0 0.013 5.9E-07 32.1 22.5 178 17-212 2-189 (316)
50 2qu7_A Putative transcriptiona 96.9 0.015 6.5E-07 31.9 17.1 199 15-239 5-212 (288)
51 3bbl_A Regulatory protein of L 96.9 0.016 7.2E-07 31.7 16.3 202 18-239 4-213 (287)
52 2rgy_A Transcriptional regulat 96.7 0.021 9.5E-07 30.9 17.8 200 15-239 5-214 (290)
53 1dbq_A Purine repressor; trans 96.5 0.028 1.2E-06 30.2 19.6 205 15-240 4-213 (289)
54 3jy6_A Transcriptional regulat 96.5 0.028 1.2E-06 30.2 22.4 199 16-239 5-206 (276)
55 3k4h_A Putative transcriptiona 96.5 0.028 1.3E-06 30.2 16.7 204 15-239 5-217 (292)
56 3gyb_A Transcriptional regulat 96.5 0.028 1.3E-06 30.2 13.8 194 18-239 5-201 (280)
57 1gud_A ALBP, D-allose-binding 96.5 0.03 1.3E-06 30.1 19.2 92 19-121 2-94 (288)
58 2fep_A Catabolite control prot 96.3 0.038 1.7E-06 29.4 19.0 199 17-239 15-220 (289)
59 3dbi_A Sugar-binding transcrip 96.3 0.04 1.8E-06 29.3 19.8 204 17-240 60-268 (338)
60 3c3k_A Alanine racemase; struc 96.1 0.05 2.2E-06 28.7 22.2 199 15-239 5-209 (285)
61 3k9c_A Transcriptional regulat 96.0 0.052 2.3E-06 28.6 16.6 198 16-239 10-210 (289)
62 3cs3_A Sugar-binding transcrip 95.9 0.059 2.6E-06 28.3 16.8 191 17-238 7-201 (277)
63 3e61_A Putative transcriptiona 95.9 0.061 2.7E-06 28.2 20.8 197 14-240 4-203 (277)
64 2h0a_A TTHA0807, transcription 95.6 0.078 3.5E-06 27.6 13.3 196 20-239 1-205 (276)
65 3bil_A Probable LACI-family tr 95.6 0.079 3.5E-06 27.5 19.1 200 16-239 64-266 (348)
66 2fqx_A Membrane lipoprotein TM 95.5 0.084 3.7E-06 27.4 21.0 209 16-248 2-222 (318)
67 3kke_A LACI family transcripti 95.2 0.11 4.7E-06 26.7 18.3 207 11-240 8-223 (303)
68 1qpz_A PURA, protein (purine n 95.0 0.12 5.4E-06 26.4 20.5 204 16-240 56-264 (340)
69 3hs3_A Ribose operon repressor 95.0 0.12 5.5E-06 26.3 16.1 196 13-239 5-203 (277)
70 3egc_A Putative ribose operon 93.3 0.29 1.3E-05 24.2 18.5 202 16-240 6-212 (291)
71 3e3m_A Transcriptional regulat 93.0 0.31 1.4E-05 23.9 21.4 201 17-240 69-276 (355)
72 3kjx_A Transcriptional regulat 91.6 0.47 2.1E-05 22.9 18.2 201 16-239 66-272 (344)
73 3h5t_A Transcriptional regulat 91.1 0.53 2.3E-05 22.6 14.3 204 17-239 67-293 (366)
74 1jye_A Lactose operon represso 89.7 0.7 3.1E-05 21.8 21.4 202 15-240 58-264 (349)
75 2w7t_A CTP synthetase, putativ 89.0 0.79 3.5E-05 21.5 6.4 95 15-118 5-103 (273)
76 2v4u_A CTP synthase 2; pyrimid 88.6 0.83 3.7E-05 21.4 11.2 95 15-118 22-126 (289)
77 2o20_A Catabolite control prot 87.6 0.97 4.3E-05 21.0 20.0 200 15-239 60-264 (332)
78 3h5o_A Transcriptional regulat 85.3 1.3 5.7E-05 20.2 18.2 201 16-240 60-265 (339)
79 2hsg_A Glucose-resistance amyl 83.9 1.5 6.6E-05 19.9 15.4 202 15-239 57-264 (332)
80 2hqb_A Transcriptional activat 83.6 1.5 6.8E-05 19.8 19.0 192 20-238 7-205 (296)
81 1vco_A CTP synthetase; tetrame 67.1 4.3 0.00019 17.1 5.7 16 194-209 282-297 (550)
82 3ctp_A Periplasmic binding pro 66.9 4.4 0.00019 17.1 17.8 196 16-240 58-257 (330)
83 3dnf_A ISPH, LYTB, 4-hydroxy-3 63.6 5.1 0.00022 16.7 6.3 67 155-226 156-222 (297)
84 2dgd_A 223AA long hypothetical 61.9 5.4 0.00024 16.5 8.6 47 146-195 98-145 (223)
85 1y0b_A Xanthine phosphoribosyl 57.3 6.5 0.00029 16.0 5.1 122 68-192 31-156 (197)
86 3a8t_A Adenylate isopentenyltr 50.6 7.3 0.00033 15.7 2.4 43 77-119 31-73 (339)
87 1s1m_A CTP synthase; CTP synth 50.3 8.5 0.00038 15.3 6.8 14 195-208 272-285 (545)
88 2c95_A Adenylate kinase 1; AP4 49.8 8.7 0.00039 15.3 3.4 36 83-118 6-41 (196)
89 2zzv_A ABC transporter, solute 43.7 11 0.00048 14.7 4.7 41 18-69 35-75 (361)
90 2hzl_A Trap-T family sorbitol/ 43.4 11 0.00049 14.7 3.5 60 18-90 33-93 (365)
91 2eq5_A 228AA long hypothetical 42.6 4.2 0.00019 17.1 0.1 89 17-118 5-104 (228)
92 2rgx_A Adenylate kinase; trans 40.7 12 0.00053 14.4 2.4 31 88-118 2-32 (206)
93 3jvd_A Transcriptional regulat 39.4 13 0.00056 14.3 19.2 193 15-239 61-256 (333)
94 1o57_A PUR operon repressor; p 36.0 14 0.00064 14.0 4.2 141 45-192 87-232 (291)
95 3ke8_A 4-hydroxy-3-methylbut-2 35.2 15 0.00065 13.9 5.1 16 37-52 24-39 (326)
96 3dl0_A Adenylate kinase; phosp 34.4 15 0.00068 13.8 2.4 31 89-119 3-33 (216)
97 2bbw_A Adenylate kinase 4, AK4 33.8 14 0.00064 13.9 1.7 33 87-119 28-60 (246)
98 3cm0_A Adenylate kinase; ATP-b 33.3 15 0.00065 13.9 1.7 33 86-118 4-36 (186)
99 3exa_A TRNA delta(2)-isopenten 33.2 16 0.00071 13.7 2.7 34 86-119 3-36 (322)
100 1aky_A Adenylate kinase; ATP:A 30.9 17 0.00077 13.5 2.5 31 89-119 7-37 (220)
101 1zd8_A GTP:AMP phosphotransfer 30.6 18 0.00078 13.4 2.6 31 89-119 10-40 (227)
102 3ixl_A Amdase, arylmalonate de 30.6 18 0.00078 13.4 13.5 40 152-194 114-153 (240)
103 1ytl_A Acetyl-COA decarbonylas 30.0 18 0.0008 13.4 3.9 45 77-121 27-71 (174)
104 3gxa_A Outer membrane lipoprot 29.1 19 0.00083 13.3 5.5 59 15-94 21-80 (275)
105 3fb4_A Adenylate kinase; psych 28.6 19 0.00085 13.2 2.2 30 89-118 3-32 (216)
106 1ak2_A Adenylate kinase isoenz 28.1 19 0.00086 13.2 2.5 31 89-119 19-49 (233)
107 3gmt_A Adenylate kinase; ssgci 28.0 19 0.00087 13.2 1.9 31 89-119 11-41 (230)
108 1e4v_A Adenylate kinase; trans 27.5 20 0.00088 13.1 2.0 31 89-119 3-33 (214)
109 1di6_A MOGA, molybdenum cofact 27.5 20 0.00089 13.1 7.0 72 17-95 2-74 (195)
110 1vch_A Phosphoribosyltransfera 26.6 21 0.00092 13.0 6.0 119 68-192 31-156 (175)
111 1ukz_A Uridylate kinase; trans 26.3 21 0.00093 13.0 2.6 33 86-118 15-47 (203)
112 2bwj_A Adenylate kinase 5; pho 25.9 21 0.00094 12.9 2.6 35 84-118 10-44 (199)
113 1qf9_A UMP/CMP kinase, protein 24.5 23 0.001 12.8 2.0 32 87-118 7-38 (194)
114 3d3q_A TRNA delta(2)-isopenten 22.2 25 0.0011 12.5 3.0 34 86-119 7-40 (340)
115 2vvr_A Ribose-5-phosphate isom 21.8 26 0.0011 12.4 8.4 55 156-212 2-56 (149)
116 1tev_A UMP-CMP kinase; ploop, 21.7 26 0.0011 12.4 2.4 32 87-118 4-35 (196)
117 1uxo_A YDEN protein; hydrolase 21.1 26 0.0012 12.4 9.2 81 154-234 3-84 (192)
118 3crm_A TRNA delta(2)-isopenten 20.6 27 0.0012 12.3 2.7 31 88-118 7-37 (323)
119 1p99_A Hypothetical protein PG 20.3 27 0.0012 12.3 5.6 52 17-91 39-90 (295)
No 1
>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=0 Score=400.92 Aligned_cols=363 Identities=21% Similarity=0.234 Sum_probs=319.6
Q ss_pred CCCEEEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6835899982466770567-899999999999999855797698589999972788989999999999864885121147
Q T0528 16 ADDLKIALIYGKTGPLEAY-AKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~-g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
+||||||++.|+||+++.+ |+++++|++||++++| || ++||+|+|+++|++++|..+++++++|+++++|.+|+|+
T Consensus 2 ad~IkIG~~~p~SG~~a~~~G~~~~~g~~lav~~iN--Gg-i~Gr~velv~~D~~~~p~~a~~~~~~li~~~~V~aiiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFG--GK-VNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHT--SE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 987699998078774302288899999999999967--98-799788999955999989999999999962897699950
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA 173 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~ 173 (388)
.+|..+.++.+++++.++|+|++.++++.+++..+++++|++.++..++...++.++. +++|++++|++|++||+....
T Consensus 79 ~~S~~~~a~~~~a~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~k~v~~i~~d~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf 55167778777887608753344445532346677763344146649999999999875137789995168718789999
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCC-CCCCHH
Q ss_conf 9999998639859984101754331289999999843357645899960520789999999715300362112-355301
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELS-TGGNIL 252 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (388)
.+++.+++.|++++...+++.+++||++++++++.+++| .+++.....+...+++++++.+......... ......
T Consensus 159 ~~~~~~~~~G~~vv~~~~~~~~~~df~~~v~~i~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQ---ILGLANAGGDTVNAIKAAKEFGITKTMKLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCS---EEEEECCHHHHHHHHHHHHHTTGGGTCEEEESSCCHHH
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 999988744964888896067565413799887625998---89990577068999999998098876599970365588
Q ss_pred HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 22211010055257402257877898999999999997088987568999999999999999618998899999996187
Q T0528 253 PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGME 332 (388)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~ 332 (388)
.........+|++....+.+ ..++..++|.++|+++++..|+.++..+||+++++++|++++|+.|+++|+++|++++
T Consensus 236 ~~~~~~~~~~G~~~~~~~~~--~~~~~~~~f~~~y~~~~~~~p~~~~~~~Yda~~~~~~Ai~~ags~d~~~v~~aL~~~~ 313 (375)
T 3i09_A 236 VHALGLETTQGLVLTDSWYW--NRDQASRQWAQRYFAKMKKMPSSLQAADYSSVTTYLKAVQAAGSTDSDKVMAQLKKMK 313 (375)
T ss_dssp HHHHCHHHHTTCEEEESCCT--TSSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 88641353178045225662--1245679999999887579998789999999999999999858999999999985498
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECC--CEEECCCCCCCCCCHHHHCCCHHHC
Q ss_conf 555324789724788502437999998568--2420212122317878814305406
Q T0528 333 FDTPKGKMVFRKEDHQALQSMYHFKVKVDP--AVAWAVLEPVRELKIEEMNIPIKNK 387 (388)
Q Consensus 333 ~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~v~~~~~~~~~~p~~~~ 387 (388)
|+++.|+++|++ ||+..+++|+.|++.++ ++.|++++.+.++|++++.+|..+.
T Consensus 314 ~~~~~G~~~~~~-d~~~~~~~y~~~v~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~ 369 (375)
T 3i09_A 314 IDDFYAKGYIRT-DGSMIHDMYLMEVKKPSESKEPWDYYKVVATIPGEQAFTTKQET 369 (375)
T ss_dssp EESSSCEEEECT-TSBEECCEEEEEECCGGGCCSTTCCEEEEEEECHHHHSCCTTTC
T ss_pred CCCCCCCEEECC-CCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCHHHCCCCCCCC
T ss_conf 427876669999-99841557999998788777776346065455889837998878
No 2
>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=0 Score=391.28 Aligned_cols=367 Identities=22% Similarity=0.242 Sum_probs=311.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
++||||||++.|+||+.+ +|.++++|++||+|++|++||+++||+|+++++|++++|..+.+++++|+.++++.+|+|+
T Consensus 2 a~~~ikIG~~~~~sG~~a-~g~~~~~g~~la~e~iN~~GG~l~Gr~ielv~~D~~~~p~~a~~~~~~Li~~~~v~aiiG~ 80 (387)
T 3i45_A 2 SLEAIRIGEINSYSQIPA-FTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGT 80 (387)
T ss_dssp CCCCEEEEEEECTTTCHH-HHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEEC
T ss_pred CCCCEEEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 888769999736877033-3399999999999999866997099899999973899999999999999963897699962
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHH
Q ss_conf 75133778889998649778642677610157776534897347657888999999971-89389998548743223478
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVA 173 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~~~ 173 (388)
.+|..+.++.+++.+.++|+|++.+.++.++....++++|++.++..++...++.++.+ +++++++|++|++||+....
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~d~~~g~~~~~ 160 (387)
T 3i45_A 81 FLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVA 160 (387)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 68812789999999839753345544420003568872686147678899999999886287178544789678899999
Q ss_pred HHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC--CCCCCC
Q ss_conf 99999986398--59984101754331289999999843357645899960520789999999715300362--112355
Q T0528 174 AFKEALAKTGA--TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI--ELSTGG 249 (388)
Q Consensus 174 ~~~~~~~~~g~--~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 249 (388)
.+++.+++.|+ +++....++.+++||+++++++++..+| .+++.....+...+++++...+...... ......
T Consensus 161 ~~~~~~~~~g~~v~~v~~~~~~~~~~D~~~~i~~i~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 237 (387)
T 3i45_A 161 RFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPE---GLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGE 237 (387)
T ss_dssp HHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCS---EEEECCCTTHHHHHHHHHHHHTSSTTCEEEEEEEES
T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 88877752366136887664026651167898888860983---899993337899999999981887676034302457
Q ss_pred CHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 30122211010055257402257877898999999999997088987568999999999999999618998899999996
Q T0528 250 NILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAME 329 (388)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~ 329 (388)
............+|+.....+ ....++|..++|+++|+++||..|+.++..+||+++++++|++++|+.|+++|+++|+
T Consensus 238 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~f~~~y~~~~g~~p~~~~~~~yda~~~l~~Al~~ag~~~~~~v~~aL~ 316 (387)
T 3i45_A 238 PEYLNPLKDEAPEGWIVTGYP-WYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFEKAGGTESETLVETLK 316 (387)
T ss_dssp HHHHGGGGGGCCSSCEEEECC-GGGCCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 044332111212685797315-6678998999999999998689997688999999999999999878999999999996
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCEEEEEEE-ECCC---EEECCCCCCCCCCHHHHC---CCHHH
Q ss_conf 187555324789724788502437999998-5682---420212122317878814---30540
Q T0528 330 GMEFDTPKGKMVFRKEDHQALQSMYHFKVK-VDPA---VAWAVLEPVRELKIEEMN---IPIKN 386 (388)
Q Consensus 330 ~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~v~~~~~~~~~---~p~~~ 386 (388)
+++|+|+.|+++|+++|||..+++++.+++ .||+ +.|...+....+|++++. .|+.+
T Consensus 317 ~~~~~g~~G~v~f~~~~hq~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~ 380 (387)
T 3i45_A 317 DMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGSVLPPPEVVSAWRPAGE 380 (387)
T ss_dssp TCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGGGSCCHHHHHTTSCCC-
T ss_pred CCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCEECCCHHHHHCCCCCCC
T ss_conf 4986377268998079997555547999999889289965896268320598678754785677
No 3
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=0 Score=377.72 Aligned_cols=354 Identities=17% Similarity=0.256 Sum_probs=299.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
.+++|+||+++|+||+++.+|+.+.+|++||+|++|++|| |+||+|+++++|++++|..+++++++|+.+++|.+|+|+
T Consensus 4 ~~~~~~IG~~~~lsG~~a~~G~~~~~g~~lAve~iN~~GG-i~Gr~iel~~~D~~~~p~~a~~~a~~li~~d~V~aiiG~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGG-VGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTT-BTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 8898779998378684265509999999999999984299-788698999977999999999999999961897699978
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA 173 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~ 173 (388)
.+|..+.++.+++++.++|++++.+.+ ....++++|++.++..++...++.++. ++++++++++.|++||+....
T Consensus 83 ~~S~~~~a~~~~~~~~~vp~i~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~va~~~~d~~~g~~~~~ 158 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYE----GFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNH 158 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCC----CCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCC----CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 850888999999997397267345577----6557898788326718989999999987178479982267762355655
Q ss_pred HHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC--CCCCCC
Q ss_conf 99999986398599841017--54331289999999843357645899960520789999999715300362--112355
Q T0528 174 AFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI--ELSTGG 249 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 249 (388)
.+++.+++.|++|+...+++ ++++||++++++++++++| .+++.....+...++++..+.+.....+ ......
T Consensus 159 ~~~~~~~~~G~~vv~~~~~~~~~~~~D~~~~v~~i~~~~pd---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (385)
T 1pea_A 159 VMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARAD---VVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTS 235 (385)
T ss_dssp HHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCS---EEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 46666664168357899616764420168999998751899---899996347799999999984799886499966776
Q ss_pred CHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 3012221101005525740225787789899999999999708898--75689999999999999996189988999999
Q T0528 250 NILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP--DFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAA 327 (388)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p--~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~a 327 (388)
.............+......+ +...++|.+++|+++|+++|+..| +.++..+||+++++++|++++|+.|+++|+++
T Consensus 236 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~f~~~~~~~~g~~~~~~~~a~~~Y~a~~~la~Ai~~aGs~d~~~i~~a 314 (385)
T 1pea_A 236 EAEVAKMESDVAEGQVVVAPY-FSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRH 314 (385)
T ss_dssp HHHHTTSCHHHHTTCEEEESC-CTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CHHHHHHCCCCCCCCEEECCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 677763234001671131256-7767986778999999997287888772899999999999999998789999999999
Q ss_pred HHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC--EEECCCCCCCCCCH
Q ss_conf 961875553247897247885024379999985682--42021212231787
Q T0528 328 MEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA--VAWAVLEPVRELKI 377 (388)
Q Consensus 328 L~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~v~~~~~ 377 (388)
|++++|+++.|+++||+.+||..+++||+|++.||. +.|...+||.+-|.
T Consensus 315 L~~~~~~~~~G~i~f~~~~~~~~~~~~i~~v~~dG~~~vv~~~~~~v~p~p~ 366 (385)
T 1pea_A 315 LYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 366 (385)
T ss_dssp HTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEECSSCBCCCSS
T ss_pred HHCCCEECCCCCEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf 8269624795567985899802687699999479978999426983689987
No 4
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=0 Score=355.29 Aligned_cols=345 Identities=17% Similarity=0.178 Sum_probs=299.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+|+||+++|+||+++.+|+++.+|++||++++|+.|| ++||+|+++++|++++|..+.+++++|+.+++|++|+||.
T Consensus 2 ~~~I~IG~~~p~sG~~a~~G~~~~~g~~la~~~iN~~gg-i~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~aviG~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGG-VGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 975699998588781277789999999999999986599-6986989999738999999999999998549943996686
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHH
Q ss_conf 5133778889998649778642677610157776534897347657888999999971-893899985487432234789
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVAA 174 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~~~~ 174 (388)
+|..+.++.+++++.++|+|++.++++.++. .++++|++.+++..++..++.++.. +++++++++.+++||+.....
T Consensus 81 ~s~~~~a~~~~~~~~~ip~i~~~a~~~~~~~--~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 158 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIK--ISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQA 158 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTT--SCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
T ss_conf 4288999999863245443344456831013--68846995226088999999888760781699960567265899999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH
Q ss_conf 99999863985998410175433128999999984335764589996052078999999971530036211235530122
Q T0528 175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPA 254 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (388)
+++.+++.|++++....+++++.|+++++.++++.++| .+++.........++.++.+.+.....+...........
T Consensus 159 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~l~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 235 (358)
T 3hut_A 159 FRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQ---AIYLAMAYEDAAPFLRALRARGSALPVYGSSALYSPKFI 235 (358)
T ss_dssp HHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHHHTTCCCCEEECGGGCSHHHH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
T ss_conf 86445406978999995599873115899999865999---999973668899999999981999865642056776776
Q ss_pred HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHCC-C
Q ss_conf 2110100552574022578778989999999999970889875689999999999999996189-9889999999618-7
Q T0528 255 LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKS-TDTEKLIAAMEGM-E 332 (388)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~-~~~~~v~~aL~~~-~ 332 (388)
.......++.+....+. ....+|..++|.++|+++||.+|+.++..+||+++++++|++++|+ .+++.|+++|+++ +
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~g~~p~~~~~~~Yda~~l~~~Al~~ag~~~~~~~l~~aL~~~~~ 314 (358)
T 3hut_A 236 DLGGPAVEGVRLATAFV-LGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAGPEVTRESLRDALAATDR 314 (358)
T ss_dssp HHHGGGGTTCEEEESCC-TTCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHTCCS
T ss_pred HHCCHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 40221321872234566-65799899999999999868899767999999999999999987899999999999974799
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCCEEECCCC
Q ss_conf 55532478972478850243799999856824202121
Q T0528 333 FDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVAWAVLE 370 (388)
Q Consensus 333 ~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 370 (388)
|+|++|+++|++++|+...++++.+++ +| .|..++
T Consensus 315 ~~g~~G~i~f~~~~~~~~~~~~~~~~~-~G--~~~~v~ 349 (358)
T 3hut_A 315 YAGVTGITRFDPETRETTKILTRLVVR-EG--DFRVID 349 (358)
T ss_dssp EEETTEEEEECTTTCCEEECCEEEEEE-TT--EEEEC-
T ss_pred CCCCCEEEEECCCCCCCCCCEEEEEEE-CC--EEEEEE
T ss_conf 716726899899969257767999999-99--899997
No 5
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=0 Score=352.19 Aligned_cols=356 Identities=14% Similarity=0.092 Sum_probs=276.5
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCH-HHHHHHHHHHHHCCCCCC
Q ss_conf 0035683589998246677056789999999999999985579769858999997278898-999999999986488512
Q T0528 12 AVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKP-DLSKAALAEAYQDDGADI 90 (388)
Q Consensus 12 ~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~-~~a~~~~~~li~~~~v~~ 90 (388)
.+.++||||||+++|+||+++..|+++.+|++||+|++|+.|| |.||+|+|+++|+++|| ..+.+++++|+++++|.+
T Consensus 8 ~a~~~d~IkIG~~~plsG~~a~~G~~~~~g~~lA~e~iN~~Gg-i~G~~i~lv~~D~~~~p~~~a~~~a~~Li~~~~V~~ 86 (419)
T 3h5l_A 8 QAQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGG-ILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASA 86 (419)
T ss_dssp -----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTS-BTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 3257998799998278684044119999999999999984199-688688999977999979999999999984179548
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEECCCCC--CCCCCC--CCCCEEEEECCCHHHHHHHHHHHHH---------HCCCE
Q ss_conf 1147751337788899986497786426776--101577--7653489734765788899999997---------18938
Q T0528 91 AIGTSSSAAALADLPVAEENKKILIVEPAVA--DQITGE--KWNRYIFRTGRNSSQDAISNAVAIG---------KQGVT 157 (388)
Q Consensus 91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 157 (388)
|+|+++|..+.++++++++.++|+|++.+++ ..++.. ..+.++++..++..........++. +++++
T Consensus 87 iiG~~~S~~~~av~~~~~~~~ip~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 166 (419)
T 3h5l_A 87 LIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK 166 (419)
T ss_dssp EECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred EECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 75686626667777668636856995056556710115677644202136640699999999988888877763268878
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC-HHHHHHHHHHHH
Q ss_conf 9998548743223478999999863985998410175433128999999984335764589996052-078999999971
Q T0528 158 IATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWA-GGGDPLTKLQDM 236 (388)
Q Consensus 158 v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 236 (388)
+++|++|++||+.....+++.+++.|++++..+.++++++||+++++++++.++| .+++..... ....++.+....
T Consensus 167 vaii~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~~~~l~~i~~~~pd---~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPA---VIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCS---EEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCC---EEEEEECCCHHHHHHHHHHHHC
T ss_conf 9999537437789999999999973252221012553212100466665304997---8999722732458999998751
Q ss_pred CCHHCCCCCCCCCCHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 53003621123553012221101005525740225787789899999999999708898-75689999999999999996
Q T0528 237 DPKRYGIELSTGGNILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP-DFFTAGGFSAAMAVVTAVQK 315 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p-~~~a~~~Yda~~~~~~Ai~~ 315 (388)
+.....+...................|+..... +..+.++..++|.++|+++||..| +.++..+||+++++++|+++
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~f~~~y~~~~g~~~~~~~~~~aYdav~~la~Ai~~ 321 (419)
T 3h5l_A 244 PTNSLVYLQYGASLAAFRDIAGDNSVGVTYATV--LGTLQDEMGDAFAKAYKERYGDLSSTASGCQTYSALYAYSIAAAL 321 (419)
T ss_dssp CCSCEEEECSGGGSHHHHHHHGGGGTTCEEEES--SCCCSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 468729996266637888654652164289723--788899788999999999818999860189999999999999998
Q ss_pred HCCC-------CHHHHHHHHHCCCCCCCEEEEEECCCCCCCC------------CCEEEEEEEECC-CEEECCCCCCC
Q ss_conf 1899-------8899999996187555324789724788502------------437999998568-24202121223
Q T0528 316 AKST-------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQAL------------QSMYHFKVKVDP-AVAWAVLEPVR 373 (388)
Q Consensus 316 ag~~-------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~------------~~~~i~~~~~~~-~~~~~~~~~v~ 373 (388)
+|+. |+++|+++|++++|+|++|+++|++++|+.. .+..++|++... .....|+++..
T Consensus 322 ag~~~~~~~~~~~~~l~~aL~~~~~~g~~G~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~v~P~~~~ 399 (419)
T 3h5l_A 322 AGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAEDGVLIAPAPYK 399 (419)
T ss_dssp TTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTSCCEEEESTTSC
T ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
T ss_conf 586667889876999999984198477856799889997444455534576677645899998685105887776335
No 6
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=332.97 Aligned_cols=341 Identities=18% Similarity=0.168 Sum_probs=287.3
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 35683589998246677056789999999999999985579769858999997278898999999999986488512114
Q T0528 14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG 93 (388)
Q Consensus 14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G 93 (388)
.++++|+||++.|+||+++.+|+++.+|++++++++|++|| |+||+|+++++|++++|..+++++++|+++++|.+| |
T Consensus 3 ~~~~~i~ig~~~plSG~~a~~G~~~~~g~~~a~~~iN~~GG-i~Gr~ielv~~D~~~~p~~a~~~a~~lv~~~~v~~i-~ 80 (392)
T 3lkb_A 3 LGQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKL-VPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVF-L 80 (392)
T ss_dssp CCCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTS-STTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCE-E
T ss_pred CCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE-E
T ss_conf 77885499998488784133049999999999999985399-698799999995899999999999999856996699-0
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHH
Q ss_conf 77513377888999864977864267761015777653489734765788899999997--1893899985487432234
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQGVTIATLAQDYAFGRDG 171 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~~g~~~ 171 (388)
+.+|..+.++.+++++.++|+|++++++.. .....++|+|++.+++..+...+..++. .+++++++|+++++||+..
T Consensus 81 ~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~kkvaii~~~~~~g~~~ 159 (392)
T 3lkb_A 81 SYATGANLQLKPLIQELRIPTIPASMHIEL-IDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAP 159 (392)
T ss_dssp ECCHHHHHHHHHHHHHHTCCEEESCCCGGG-GSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCEEECCCCCCCE-ECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 798589999999986458018745566301-2268987279722636888888999998762897799993356303899
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf 78999999863985998410175433128999999984335764589996052078999999971530036211235530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI 251 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
...+++.+++.|++++..+.++++++||++++++++++.+| .+++.....+...+++++++.+.....+........
T Consensus 160 ~~~~~~~~~~~G~~v~~~~~~~~~~~D~~~~v~~i~~~~pd---~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 236 (392)
T 3lkb_A 160 VEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVE---YVVHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGP 236 (392)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSH
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 99999999874987999981489972355788876536998---999936626799999999983999649995567888
Q ss_pred HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHH----CCCCHHH
Q ss_conf 12221101005525740225787789899999999999708898----756899999999999999961----8998899
Q T0528 252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP----DFFTAGGFSAAMAVVTAVQKA----KSTDTEK 323 (388)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p----~~~a~~~Yda~~~~~~Ai~~a----g~~~~~~ 323 (388)
..........+|++....+.+...+. ...+|.++|+++|+..+ +.+...+|++++++++||+++ ++.+++.
T Consensus 237 ~~~~~~g~~~eG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~aa~~~~~Al~~A~~~~~~~t~~~ 315 (392)
T 3lkb_A 237 DLIALAGDAAEGFLWATSFYMAHEDT-PGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNET 315 (392)
T ss_dssp HHHHHHGGGGTTCEEEESBCCTTSCC-HHHHHHHHHHHHTTCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 89988788758779999527778870-51999999999858997767547999999999999999999886348999999
Q ss_pred HHHHHHCCCCC-----------CCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 99999618755-----------5324789724788502437999998568
Q T0528 324 LIAAMEGMEFD-----------TPKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 324 v~~aL~~~~~~-----------g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
|+++|++++.. +..++++|++.||+...+++++|++ +|
T Consensus 316 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~dh~g~~~~~i~q~~-gg 364 (392)
T 3lkb_A 316 VYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK-GG 364 (392)
T ss_dssp HHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE-TT
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEE-CC
T ss_conf 99999838684322544444467786133073557787748999999-99
No 7
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=0 Score=330.57 Aligned_cols=340 Identities=18% Similarity=0.197 Sum_probs=288.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
|+||||+++|+||+++.+|..+.+|++||++++|+.|| |+||+|+++++|++++|..+.+++++|+++ ++..++|+.+
T Consensus 1 d~I~IG~~~plSG~~a~~g~~~~~g~~lav~~iN~~gg-i~G~~v~l~~~D~~~~p~~a~~~a~~li~~-~~~~~i~~~~ 78 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGG-IKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHLC 78 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEECCCC
T ss_conf 93899998388783377689999999999999987299-888168999945999989999999999866-9953544633
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899999997--1893899985487432234789
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQGVTIATLAQDYAFGRDGVAA 174 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~~g~~~~~~ 174 (388)
+..+.++.+.+++.++|++++.+++..+... .++++|+..++...+......+.. ..++++++++++++|++.....
T Consensus 79 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 157 (346)
T 1usg_A 79 SSSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 157 (346)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHHCC-CCCCEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 5641135555432134555665578244036-652200023332133444544321024552036741652012567877
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH
Q ss_conf 99999863985998410175433128999999984335764589996052078999999971530036211235530122
Q T0528 175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPA 254 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (388)
++..+++.|++++..+.++.+++|+.++++++++.++| .+++.........++.++.+.+.........+.......
T Consensus 158 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (346)
T 1usg_A 158 VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID---FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLS 234 (346)
T ss_dssp HHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCCTTHH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC---EEEEEECCHHHHHEEEECCCCCCCCEEEEEEECCCCCCC
T ss_conf 65544134422788873362111013688888753874---699974443443214101223556303310001465312
Q ss_pred HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 21101005525740225787789899999999999708898756899999999999999961899889999999618755
Q T0528 255 LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFD 334 (388)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~ 334 (388)
........|........+ ..++..++|.++|+++++..|+.++..+||+++++++|++++|+.++++|+++|++++|+
T Consensus 235 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~Yda~~~la~Al~~~gs~~~~~i~~al~~~~~~ 312 (346)
T 1usg_A 235 NIAGDAAEGMLVTMPKRY--DQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGAN 312 (346)
T ss_dssp HHHGGGGTTCEEEECCCG--GGSGGGHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEE
T ss_pred CCCCCCCCCEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 111123331244214678--777202578999999747899824999999999999999988899899999999738986
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCCE
Q ss_conf 532478972478850243799999856824
Q T0528 335 TPKGKMVFRKEDHQALQSMYHFKVKVDPAV 364 (388)
Q Consensus 335 g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~ 364 (388)
|+.|+++||++++....+++++|++.||..
T Consensus 313 g~~G~i~fd~~G~~~~~~~~~~q~~~dg~~ 342 (346)
T 1usg_A 313 TVIGPLNWDEKGDLKGFDFGVFQWHADGSS 342 (346)
T ss_dssp ETTEEECBCTTSSBSSCCCEEEEECTTSCE
T ss_pred CCEEEEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf 664889999996827898799999759859
No 8
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=0 Score=325.22 Aligned_cols=344 Identities=14% Similarity=0.132 Sum_probs=286.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
+-.+|+||..+|+||+++.+|+++.+|+++|++++|++|| |+||+|+++++|++++|..+.+++++|+.++++.+|+|+
T Consensus 2 ~~~~i~i~~~lPltG~~a~~G~~~~~g~~la~~~iN~~GG-I~Gr~i~l~~~D~~~~p~~a~~~a~~li~~~~v~ai~G~ 80 (364)
T 3lop_A 2 SLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGG-INGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTV 80 (364)
T ss_dssp ---CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECC
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7425799999789772276669999999999999985499-798787999981899999999999999854996799988
Q ss_pred CCCHHHHHHH--HHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHH
Q ss_conf 7513377888--9998649778642677610157776534897347657888999999971-893899985487432234
Q T0528 95 SSSAAALADL--PVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~--~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~ 171 (388)
.+|....++. +.+.+.++|++++.++++.+.. .+++|++.+++.++...++.++.+ +++++++|++|++||+..
T Consensus 81 ~~s~~~~a~~~~~~~~~~~ip~i~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~iv~~d~~~g~~~ 157 (364)
T 3lop_A 81 VGTANVEALMREGVLAEARLPLVGPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEA 157 (364)
T ss_dssp CCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC---CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH
T ss_conf 8847889998899997559459982667745057---9958992367157899999999981998899998368326999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf 78999999863985998410175433128999999984335764589996052078999999971530036211235530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI 251 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
...+++.+++.|++++....++.+++||+++++++++.++| .+++.........++.++.+.+.....+........
T Consensus 158 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d---~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 234 (364)
T 3lop_A 158 ITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQ---AIFLGATAEPAAQFVRQYRARGGEAQLLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCS---EEEEESCHHHHHHHHHHHHHTTCCCEEEECTTSCHH
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 99999999976988999998379885368999999857989---999968789999999999983899769997578869
Q ss_pred HHH-HHCHHHCCCEEEEEC-CCCCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHH
Q ss_conf 122-211010055257402-257877898999999999997088--9875689999999999999996189-98899999
Q T0528 252 LPA-LAAYKRLPGMEGATY-YYYDIPKNPINEWLVTEHQKRFNA--PPDFFTAGGFSAAMAVVTAVQKAKS-TDTEKLIA 326 (388)
Q Consensus 252 ~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~~~~~~~~g~--~p~~~a~~~Yda~~~~~~Ai~~ag~-~~~~~v~~ 326 (388)
... ..+.....+...... ..+....++..++|.+.|++.++. .++.++..+||+++++++|++++|+ .|+++|++
T Consensus 235 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yda~~~~a~Al~~aG~~~t~~~v~~ 314 (364)
T 3lop_A 235 ILQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPKPTREQVRH 314 (364)
T ss_dssp HHHHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99987417865768999971676665899999999999985089999878999999999999999998779999999999
Q ss_pred HHHCCCCCCC-EE-EEEECCCCCCCCCCEEEEEEEECCCEE
Q ss_conf 9961875553-24-789724788502437999998568242
Q T0528 327 AMEGMEFDTP-KG-KMVFRKEDHQALQSMYHFKVKVDPAVA 365 (388)
Q Consensus 327 aL~~~~~~g~-~G-~i~f~~~~~~~~~~~~i~~~~~~~~~~ 365 (388)
+|+++++.+. .| +++|++++|+..+.+++.++..||.+.
T Consensus 315 aL~~~~~~~~~g~~~i~f~~~~~~~~~~~~~~~v~~~G~~~ 355 (364)
T 3lop_A 315 ALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp HHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred HHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEE
T ss_conf 99718985788844883699887674348999997995899
No 9
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=0 Score=298.07 Aligned_cols=339 Identities=15% Similarity=0.118 Sum_probs=262.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6835899982466770567899999999999999855797698----589999972788989999999999864885121
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDG----RKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~G----r~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
+.+||||++.|+||+++.+|+.+.+|+++|++++|++|| |+| |+|+++++|++++|..+++++++|+.+++|.+|
T Consensus 2 ~~TIkIG~~~~~SG~~a~~G~~~~~g~~~a~~~iN~~GG-i~G~~~~~~ve~v~~D~~~~p~~a~~~a~~Li~~~~v~~i 80 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGI-YTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAI 80 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCE-ECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCEEEEEEEECCCCCHHHHCHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 606999888478682455169999999999999987299-7788664489999856999999999999999856993899
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HC-CCEEEEEECCCHHH
Q ss_conf 1477513377888999864977864267761015777653489734765788899999997--18-93899985487432
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQ-GVTIATLAQDYAFG 168 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~i~~d~~~g 168 (388)
+|+ +|..+.++.+.+++.++|+++++++.. .+. .+++|+..+....+......++. .. .++++++..+++||
T Consensus 81 ~g~-~s~~~~a~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~g 155 (391)
T 3eaf_A 81 IGW-GTADTEKLSDQVDTDKITYISASYSAK-LLV---KPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS 155 (391)
T ss_dssp EEC-CHHHHHHHHHHHHHHTCEEEESCCCGG-GTT---STTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH
T ss_pred ECC-CCHHHHHHHHHHHHHCCEEECCCCCCC-CCC---CCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 807-873677777999972732525766832-014---786012203770888999999998424760499983476424
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH--HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCC
Q ss_conf 234789999998639859984101754331289--999999843357645899960520789999999715300362112
Q T0528 169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTA--VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELS 246 (388)
Q Consensus 169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~--~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (388)
+.....++..+++.|++++....++.+.+|+.. ++.++++..+| .+++.........+++++++.+.....+...
T Consensus 156 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~~~~pd---~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 232 (391)
T 3eaf_A 156 RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPD---YVWCGNTISSCSLLGRAMAKVGLDAFLLTNV 232 (391)
T ss_dssp HTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCS---EEEECSCHHHHHHHHHHHHHHTCCCEEEECG
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 7899999999997289368899714666765567787877525970---9999447279999999999759998299972
Q ss_pred CCCCHHHHHHCHHHCCCEEEEECCCC---CCCCCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 35530122211010055257402257---877898999999999997088---98756899999999999999961899-
Q T0528 247 TGGNILPALAAYKRLPGMEGATYYYY---DIPKNPINEWLVTEHQKRFNA---PPDFFTAGGFSAAMAVVTAVQKAKST- 319 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~f~~~~~~~~g~---~p~~~a~~~Yda~~~~~~Ai~~ag~~- 319 (388)
................|.......+. ...+.+..+.| .++.++++. .++.++..+|++++++++|++++++.
T Consensus 233 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gy~a~~~~~~Al~~a~~~~ 311 (391)
T 3eaf_A 233 WGFDERSPQLIGEGGYGKVFGISPFIYPMFGQDVEGIQTI-FEAARMNGVSEDQINLRVVQGFVNVWLLIKAIESVTSQD 311 (391)
T ss_dssp GGCSTTHHHHHCGGGTTSEEEEESBCCGGGCTTCHHHHHH-HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6789999997556415619998710456557787889999-999998559999867799999999999999999974648
Q ss_pred ----CHHHHHHHHHCCCCC--CC-EEEEEECCCCCCCCCCEEEEEEEECCCE
Q ss_conf ----889999999618755--53-2478972478850243799999856824
Q T0528 320 ----DTEKLIAAMEGMEFD--TP-KGKMVFRKEDHQALQSMYHFKVKVDPAV 364 (388)
Q Consensus 320 ----~~~~v~~aL~~~~~~--g~-~G~i~f~~~~~~~~~~~~i~~~~~~~~~ 364 (388)
++++|+++|++.+|+ |+ .|+++|++++|+..++++++|+..+|+.
T Consensus 312 ~~~~t~~~l~~aLe~~~~~~~G~~~~~i~f~~~~h~~~~~~~~~~~~~~Gk~ 363 (391)
T 3eaf_A 312 LQERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGEL 363 (391)
T ss_dssp HHHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSE
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf 9988899999999618865688667745878888876553799999539889
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3.9e-42 Score=269.44 Aligned_cols=342 Identities=10% Similarity=0.040 Sum_probs=259.5
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEECCCCHHHHHHHHHHHH--HCC
Q ss_conf 0356835899982466770567899999999999999855797----6985899999727889899999999998--648
Q T0528 13 VHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMT----LDGRKIVVITKDDQSKPDLSKAALAEAY--QDD 86 (388)
Q Consensus 13 ~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~----i~Gr~i~lv~~D~~~~~~~a~~~~~~li--~~~ 86 (388)
+...++|+||+++|++|.++..|..+..|+++|++++|+.|+. +.|++|+++++|+++++..+...+++++ .++
T Consensus 4 ~~~~~~i~igv~~P~~g~~~~~~~~~~~a~~~Av~~iN~~~~~~~~ll~g~~l~l~~~Dt~~~~~~a~~~~~~~~~~~~~ 83 (441)
T 1jdp_A 4 ALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGA 83 (441)
T ss_dssp CCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 78997119999977999422104679999999999998667855567899589999964999979999999999862457
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC
Q ss_conf 851211477513377888999864977864267761015777-653489734765788899999997-189389998548
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEK-WNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD 164 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d 164 (388)
+|.+|+||.+|..+.++++++..+++|+|+++++++.+++++ .++++||+.+++..++.+++.++. .+|+++++|+.+
T Consensus 84 ~v~aviGp~~S~~~~~va~~~~~~~ip~IS~~a~s~~ls~~~~~yp~~~rt~ps~~~~~~ai~~~l~~~~w~~va~i~~~ 163 (441)
T 1jdp_A 84 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 163 (441)
T ss_dssp CCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 80899999870899999999997498399546588012147777773999533537899999876432242047999976
Q ss_pred CHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf 7432234789999998---6398599841017543312899999998433576458999605207899999997153003
Q T0528 165 YAFGRDGVAAFKEALA---KTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY 241 (388)
Q Consensus 165 ~~~g~~~~~~~~~~~~---~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
+++++.....++...+ ..+..+...........++..+... +... ...+++.........++.++...+....
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~ii~~~~~~~~~~i~~~a~~~g~~~~ 239 (441)
T 1jdp_A 164 DKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRN-IQAS---ERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHH-HHHH---CSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH-HCCC---CCEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 86414689999999997176505999873245661778999987-5047---7549999358999999999998289888
Q ss_pred CCCCCCCC---CH-----------HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-------CCHHHH
Q ss_conf 62112355---30-----------1222110100552574022578778989999999999970889-------875689
Q T0528 242 GIELSTGG---NI-----------LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAP-------PDFFTA 300 (388)
Q Consensus 242 ~~~~~~~~---~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-------p~~~a~ 300 (388)
...+.... .. ...........+.... ....+.++..+.|.+++++.++.. ++.++.
T Consensus 240 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 316 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTV---TLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVE 316 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEE---EECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHH
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 7699995533455434663123553116789998762421---3468898789999999999873268876766326789
Q ss_pred HHHHHHHHHHHHHHHH----C-CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 9999999999999961----8-998899999996187555324789724788502437999998568
Q T0528 301 GGFSAAMAVVTAVQKA----K-STDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 301 ~~Yda~~~~~~Ai~~a----g-~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
.+||++++++.|++++ + ..++.++.++|++++|+|++|+++||.+ ++....+.|++++...
T Consensus 317 ~~yDAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~F~G~tG~v~fd~~-Gdr~~~y~i~~~~~~~ 382 (441)
T 1jdp_A 317 GFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDAN-GDRYGDFSVIAMTDVE 382 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTT-SBBCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEEECC
T ss_conf 99999999999999998668998729999999757816648636998999-9835757999999889
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth factor receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A*
Probab=100.00 E-value=7.7e-40 Score=255.69 Aligned_cols=335 Identities=12% Similarity=0.045 Sum_probs=250.3
Q ss_pred CEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-----CCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 35899982466770-56789999999999999985579769858999997278-----8989999999999864885121
Q T0528 18 DLKIALIYGKTGPL-EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQ-----SKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 18 ~IkIG~~~p~sG~~-a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~-----~~~~~a~~~~~~li~~~~v~~i 91 (388)
.|+||+++|+||.. ...|+.+..|+++|+++||++++.+.|++|+++++|++ +++..+...+.+++.+++|.+|
T Consensus 2 ~i~ig~~~Plt~~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~Dt~~~~~~~~~~~a~~~a~~~~~~~~v~ai 81 (435)
T 1dp4_A 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (435)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 46999997578974323405499999999999985889899918999999788964556978999999998863698699
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHH
Q ss_conf 1477513377888999864977864267761015777653489734765788899999997-189389998548743223
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRD 170 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~ 170 (388)
+||.+|..+.++++++...++|+|+++++++.+++...+++++|+.|++..++.++..++. .+|+++++|+.++.+|..
T Consensus 82 iGp~~S~~~~~va~~~~~~~ip~is~~at~~~ls~~~~~~~f~R~~p~~~~~~~~~~~ll~~~~w~~v~ii~~~d~~g~~ 161 (435)
T 1dp4_A 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (435)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 99987288999999998709727711567865455566763887312412666667779987499789999994786664
Q ss_pred HH------HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCC
Q ss_conf 47------899999986398599841017543312899999998433576458999605207899999997153003621
Q T0528 171 GV------AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIE 244 (388)
Q Consensus 171 ~~------~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
.. ..++....+.+..+......+....++...+.. .+.. +..+++.........++.++.+.+.......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~---~~~ii~~~~~~~~~~~~~~a~~~g~~~~~~v 237 (435)
T 1dp4_A 162 RPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRA-VRRK---GRVIYICSSPDAFRNLMLLALNAGLTGEDYV 237 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHH-HHHH---CSEEEEESCHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHH-HHCC---CCEEEEEECHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 22456788999999875565887763047642678999999-7418---8659996234777789999998088778669
Q ss_pred CCCCCCHH--------------------HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH----HC-----CCC
Q ss_conf 12355301--------------------22211010055257402257877898999999999997----08-----898
Q T0528 245 LSTGGNIL--------------------PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKR----FN-----APP 295 (388)
Q Consensus 245 ~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~----~g-----~~p 295 (388)
+....... ..........+.... .+..+.++..++|.+++++. ++ ..+
T Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 238 FFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKII---TYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp EEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEE---EECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9995534344312466434452012442037799877525662---2688898789999999999862236987554541
Q ss_pred CHHHHHHHHHHHHHHHHHHHH----CC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 756899999999999999961----89-988999999961875553247897247885024379999985
Q T0528 296 DFFTAGGFSAAMAVVTAVQKA----KS-TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 360 (388)
Q Consensus 296 ~~~a~~~Yda~~~~~~Ai~~a----g~-~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 360 (388)
+.++...||++++++.|++++ +. .++..+.++|++++|+|++|+++||.+ ++....+.|+++..
T Consensus 315 ~~~a~~~ydAv~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~n-Gdr~~~y~i~~~~~ 383 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN-GDRDTDFSLWDMDP 383 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT-SBBCCCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEEC
T ss_conf 0789999999999999999998557998899999999858857668646998999-98246269999977
No 12
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A*
Probab=100.00 E-value=1.7e-38 Score=247.58 Aligned_cols=338 Identities=12% Similarity=-0.030 Sum_probs=257.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727-88989999999999864885121147
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDD-QSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~-~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
.+.||||.++|.++......+ ..++++|+++||++++.++|++|++.+.|+ .+++..+.+.+.+|++ ++|.+|+||
T Consensus 2 ~~vi~iG~if~~~~~~~~~~~--~~A~~~Av~~IN~~~~~l~~~~l~~~~~d~~~~~~~~a~~~~~~l~~-~~V~avIGp 78 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS-LGVAAIFGP 78 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHH--HHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH-HCCSCEECC
T ss_pred CCEEEEEEEEECCCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH-CCCEEEECC
T ss_conf 848999798607898776489--99999999999659998999779999984687899999999999886-598699988
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA 173 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~ 173 (388)
.+|..+.++++++...++|+|++++++..+.. .++++||+.|++..++.+++.++. .+|+++++|++++.++.....
T Consensus 79 ~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~~--~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~vaii~~~d~~~~~~~~ 156 (395)
T 3h6g_A 79 SHSSSANAVQSICNALGVPHIQTRWKHQVSDN--KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQE 156 (395)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC--CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEESSTHHHHHTHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
T ss_conf 87277777667764048741232467745578--8862799623478888887776541343079999802124334368
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHH
Q ss_conf 99999986398599841017543312899999998433576458999605207899999997153003621123553012
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILP 253 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (388)
+.+.+.+.++++.. ..++.+..|+..++.+++...++ .+++.........++.++...+.......+........
T Consensus 157 -~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~i~~~~~~---~ivl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 231 (395)
T 3h6g_A 157 -LIKAPSRYNLRLKI-RQLPADTKDAKPLLKEMKRGKEF---HVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLF 231 (395)
T ss_dssp -HHTGGGTSSCEEEE-EECCSSGGGGHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGG
T ss_pred -HHHHHHHCCCEEEE-EECCCCCCCHHHHHHHHHHCCCC---EEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf -99999752511234-30344544399999998607860---68841688999999999998477888569998165213
Q ss_pred HHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 2211010055257402257877898999999999997088------------9875689999999999999996189---
Q T0528 254 ALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA------------PPDFFTAGGFSAAMAVVTAVQKAKS--- 318 (388)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~------------~p~~~a~~~Yda~~~~~~Ai~~ag~--- 318 (388)
.....................+.++..+.|.+.|.+++.. .++.++..+||++++++.|+++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~ 311 (395)
T 3h6g_A 232 ALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV 311 (395)
T ss_dssp GBCCTTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 44224444320353145641589755799999999985202666454446753334566657899999999998533578
Q ss_pred -----------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCEEEEEEEECCC
Q ss_conf -----------9889999999618755532478972478850-24379999985682
Q T0528 319 -----------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQA-LQSMYHFKVKVDPA 363 (388)
Q Consensus 319 -----------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~~ 363 (388)
.++..|.++|++++|+|++|++.||..+++. .-.+.|++++.++.
T Consensus 312 ~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~~g~~~~~~~~I~~~~~~~~ 368 (395)
T 3h6g_A 312 SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL 368 (395)
T ss_dssp CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEEECCCCCCCCCEEEEEEEECCEE
T ss_conf 876644577765599999998448723575008997899946573699999978937
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A*
Probab=100.00 E-value=7e-36 Score=231.92 Aligned_cols=341 Identities=15% Similarity=0.114 Sum_probs=254.5
Q ss_pred CCEEEEEEECCCCC--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 83589998246677--------------0567899999999999999855797698589999972788989999999999
Q T0528 17 DDLKIALIYGKTGP--------------LEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEA 82 (388)
Q Consensus 17 ~~IkIG~~~p~sG~--------------~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~l 82 (388)
-.|.||.++|+... ....|.....++.+|+|+||++...|+|.+|.+.++|+.+++..+++.+..+
T Consensus 16 Gdv~iGglFpih~~~~~~~~~~~~~~~~~~~~g~~~~~Am~~Aie~IN~~~~lLP~~~Lg~~i~Dtc~~~~~a~~~~~~~ 95 (496)
T 3ks9_A 16 GDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEF 95 (496)
T ss_dssp CSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 89899999877265776778865544645433589999999999998589977899888589996689858999999999
Q ss_pred HH----------------------------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 86----------------------------48851211477513377888999864977864267761015777653489
Q T0528 83 YQ----------------------------DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIF 134 (388)
Q Consensus 83 i~----------------------------~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~ 134 (388)
+. ..+|.+|+||.+|..+.++++++...++|+|+++++++.++++..+|++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avIGp~~S~~s~~va~~~~~~~ip~ISy~ats~~lsd~~~yp~ff 175 (496)
T 3ks9_A 96 IRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFL 175 (496)
T ss_dssp HSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 98502343212355542256766465312467659999998618899999999765984785772785556644588769
Q ss_pred EECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCC
Q ss_conf 734765788899999997-189389998548743223478999999863985998410175--43312899999998433
Q T0528 135 RTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALK 211 (388)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~ 211 (388)
|+.|++..++.+++.++. .+|++|++|+.++++|......+++.+++.|++|+..+.++. ...++..++.+++....
T Consensus 176 Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~~~~~~~~~~i~v~~~~~i~~~~~~~~~~~~i~~l~~~~~ 255 (496)
T 3ks9_A 176 RVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLP 255 (496)
T ss_dssp ESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTT
T ss_pred EEECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 93178789999999999862997899999536788899999999999759879999982689987899999999887402
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCC---HHHHHHCHHHCCCEEEEECCC---------------CC
Q ss_conf 576458999605207899999997153003621123553---012221101005525740225---------------78
Q T0528 212 DKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGN---ILPALAAYKRLPGMEGATYYY---------------YD 273 (388)
Q Consensus 212 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~---------------~~ 273 (388)
+ ..++++.........++.++...+.......+..... ............+........ ..
T Consensus 256 ~-~rviV~~~~~~~~~~ll~~a~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~ 334 (496)
T 3ks9_A 256 K-ARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDT 334 (496)
T ss_dssp T-TCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred C-CEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6-427999846799999999999834557624999655443144421343223651343023202366899997557455
Q ss_pred CCCCHHHHHHHHHHHHHHCC--------------------------CCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 77898999999999997088--------------------------98756899999999999999961-----------
Q T0528 274 IPKNPINEWLVTEHQKRFNA--------------------------PPDFFTAGGFSAAMAVVTAVQKA----------- 316 (388)
Q Consensus 274 ~~~~~~~~~f~~~~~~~~g~--------------------------~p~~~a~~~Yda~~~~~~Ai~~a----------- 316 (388)
.+.++..++|. ++.|+. .++.++.+.|||+++++.|+.+.
T Consensus 335 ~~~n~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~~~ 411 (496)
T 3ks9_A 335 NTRNPWFPEFW---QHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGL 411 (496)
T ss_dssp CCSCTTHHHHH---HHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSC
T ss_pred CCCCHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 67776799999---998588765322357640123553101244445438899999999999999999976006677775
Q ss_pred ----CCCCHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEECC
Q ss_conf ----8998899999996187555324-789724788502437999998568
Q T0528 317 ----KSTDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 317 ----g~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
...++..|.+.|++++|+|++| +++||.+ ++....+.|++++...
T Consensus 412 ~~~~~~~~g~~l~~~l~~v~F~G~tG~~v~Fd~n-Gd~~~~y~I~n~q~~~ 461 (496)
T 3ks9_A 412 CDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEK-GDAPGRYDIMNLQYTE 461 (496)
T ss_dssp CGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTT-SCCCCEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHCCEEECCCCCEEEECCC-CCCCCCEEEEEEEECC
T ss_conf 5567778999999998628516799998998999-9704406999999868
No 14
>2e4z_A Metabotropic glutamate receptor 7; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: MES; 3.30A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-35 Score=230.26 Aligned_cols=344 Identities=14% Similarity=0.081 Sum_probs=243.8
Q ss_pred CCCEEEEEEECCCCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH-
Q ss_conf 6835899982466770----------56789999999999999985579769858999997278898999999999986-
Q T0528 16 ADDLKIALIYGKTGPL----------EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ- 84 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~----------a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~- 84 (388)
...|.||.++|+.+.. ...|.....++++|+|+||+....|+|++|.+.++|+.+++..+++.+.+++.
T Consensus 14 ~gdi~iGglfp~~~~~~~~~~~~~~~~~~g~~~~~A~~~Aie~IN~~~~lLp~~~L~~~i~Dt~~~~~~a~~~~~~~i~~ 93 (501)
T 2e4z_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (501)
T ss_dssp CCSEEEEEEECCEEECSSSCSEEEECHHHHHHHHHHHHHHHHHHHHCSSSSSSCCEEEEEEECTTCHHHHHHHGGGGGGG
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 78889999998315588887665533103189999999999998589988999889999985179837999999999974
Q ss_pred ---------------------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf ---------------------48851211477513377888999864977864267761015777653489734765788
Q T0528 85 ---------------------DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQD 143 (388)
Q Consensus 85 ---------------------~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
..++.+|+||.+|..+.++++++..+++|+|+++++++.++++..+|++||+.|++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~aiIGp~~S~~~~~va~~~~~~~iP~IS~~sts~~ls~~~~yp~f~Rt~psd~~~ 173 (501)
T 2e4z_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQ 173 (501)
T ss_dssp GCCC-----------------CCCEEEEECCSSHHHHHHHTTHHHHTTCCEEESSCCCGGGGCTTTTSSEEESSCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf 33356656323566543325778779999998518899999999971884104653644356655587358547987999
Q ss_pred HHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHH-HHHHHHHHHC-CCCCCEEEE
Q ss_conf 899999997-189389998548743223478999999863985998-410175433128-9999999843-357645899
Q T0528 144 AISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLAT-EEYVPTTTTDFT-AVGQRLFDAL-KDKPGKKII 219 (388)
Q Consensus 144 ~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~-~~~~~~~~~d~~-~~~~~i~~~~-~d~~~~~~~ 219 (388)
+.+++..+. .+|++|++|+.+++++......+.+.+++.++.++. ...++....+.. .....++... .....++++
T Consensus 174 ~~ai~~ll~~f~W~~Vaii~~~~~~g~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rviv~ 253 (501)
T 2e4z_A 174 AQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVI 253 (501)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSHHHHHHHHHHHHHHHHTTCCCEEEEEEEC------CHHHHHHHHHHTTSTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999967993899998335112489999999998749989999995688887467778999997540478669999
Q ss_pred EEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH---HHHHHCHHHCCCEEEEECCC---------------CCCCCCHHHH
Q ss_conf 96052078999999971530036211235530---12221101005525740225---------------7877898999
Q T0528 220 WVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI---LPALAAYKRLPGMEGATYYY---------------YDIPKNPINE 281 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~~~~ 281 (388)
..........+.++...+.......+...... ...........|........ ...+.++..+
T Consensus 254 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (501)
T 2e4z_A 254 FANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFA 333 (501)
T ss_dssp ECCHHHHHHHHHHHHHTTCTTTSEEEECTTTTTCSGGGSSCHHHHTTCEEEEESCCCCHHHHHHHTTCCTTTCCSCTTHH
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCHHHH
T ss_conf 34769999999999972446763389840324434221244100373576024444460056564120501267787899
Q ss_pred HHHHHH-------------------------HHHHCCCCCHHHHHHHHHHHHHHHHHHHH---------------CCCCH
Q ss_conf 999999-------------------------99708898756899999999999999961---------------89988
Q T0528 282 WLVTEH-------------------------QKRFNAPPDFFTAGGFSAAMAVVTAVQKA---------------KSTDT 321 (388)
Q Consensus 282 ~f~~~~-------------------------~~~~g~~p~~~a~~~Yda~~~~~~Ai~~a---------------g~~~~ 321 (388)
+|.+.. ...++..++.++...|||+++++.|+++. ...++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~yDAV~~~A~AL~~~~~~~~~~~~~~~~~~~~~~g 413 (501)
T 2e4z_A 334 EYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGG 413 (501)
T ss_dssp HHHHHHTTCC-------------CCCCSGGGGCCSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHC--CCSSCTTTTTTCH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 99998519864544564334422376677624245666017899999999999999999876104577776656787889
Q ss_pred HHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEE
Q ss_conf 99999996187555324-7897247885024379999985
Q T0528 322 EKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKV 360 (388)
Q Consensus 322 ~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~ 360 (388)
..|.+.|++++|+|.+| ++.||.+ ++....+.|++.+.
T Consensus 414 ~~l~~~l~~v~f~G~tG~~v~Fd~n-Gd~~~~y~I~~~q~ 452 (501)
T 2e4z_A 414 KKLLKYIRHVNFNGSAGTPVMFNKN-GDAPGRYDIFQYQT 452 (501)
T ss_dssp HHHHHHHTTCCEECTTSCEECCCTT-SBCCCCEEEEEEEC
T ss_pred HHHHHHHCCCEEECCCCCEEEECCC-CCCCCEEEEEEEEE
T ss_conf 9999986078868899998898899-98133178999999
No 15
>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A
Probab=100.00 E-value=6.9e-35 Score=225.93 Aligned_cols=324 Identities=9% Similarity=0.037 Sum_probs=235.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
++|+||.++|.+|. +...|+++|++++|..++.+.+ .+..++.+|+..+++.+.+|+++ +|.+|+||.+
T Consensus 1 ~~i~iG~if~~~~~------~~~~a~~~Av~~iN~~~~~l~~----~~~~~~~~d~~~~~~~~~~l~~~-~V~aviGp~~ 69 (388)
T 2wjw_A 1 NSIQIGGLFPRGAD------QEYSAFRVGMVQFSTSEFRLTP----HIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD 69 (388)
T ss_dssp CCEEEEEEEETTCH------HHHHHHHHHHHHHCCSSCCEEE----EEEEECTTCHHHHHHHHHHHHHH-TCSCEEECCC
T ss_pred CEEEEEEEECCCCH------HHHHHHHHHHHHHHCCCCCCCC----EEEEEECCCHHHHHHHHHHHHHC-CCEEEECCCC
T ss_conf 96999998779985------9999999999998408996376----48997169989999999999975-9869998897
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF 175 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~ 175 (388)
|..+.++++++...++|+|++...+ ...++++|++.|+... +++.++ ..+|+++++|++++.++. ....+
T Consensus 70 s~~~~av~~i~~~~~iP~is~~~~~-----~~~~~~~~~~~p~~~~---ai~~ll~~~~w~~vaii~~~~~~~~-~~~~~ 140 (388)
T 2wjw_A 70 KKSVNTITSFCGTLHVSFITPSFPT-----DGTHPFVIQMRPDLKG---ALLSLIEYYQWDKFAYLYDSDRGLS-TLQAV 140 (388)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSCCC-----SSCCTTEEECSCCCHH---HHHHHHHHTTCCEEEEEECTTSCSH-HHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCCCCCCHHH---HHHHHHHHCCCCEEEEEECCCHHHH-HHHHH
T ss_conf 1899999999874388630244688-----7768675112868999---9999999849978999982750135-68999
Q ss_pred HHHHHHCCCEEEEEEEC----CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf 99998639859984101----75433128999999984335764589996052078999999971530036211235530
Q T0528 176 KEALAKTGATLATEEYV----PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI 251 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~----~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
.+.+.+.++++.....+ .+..+|+..++.++++..++ .+++.........++.+..+.+.......+......
T Consensus 141 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~---vivl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (388)
T 2wjw_A 141 LDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQDLELKKER---RVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLG 217 (388)
T ss_dssp HHHHHHHTCEEEEEECCCCCSSTHHHHTHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTSSGGGCEEEECSSB
T ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 99999709828999986058897478899999998736873---999964589999999999983777773699977874
Q ss_pred HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHCC-----
Q ss_conf 122211010055257402257877898999999999997088--------9875689999999999999996189-----
Q T0528 252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA--------PPDFFTAGGFSAAMAVVTAVQKAKS----- 318 (388)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~~~~Ai~~ag~----- 318 (388)
...........+...........++++..+.|.++|++.+.. .++.++..+||+++++++|+++++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~ 297 (388)
T 2wjw_A 218 FTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEI 297 (388)
T ss_dssp TTSTTGGGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33300111104550699763257763367999999999764425666777756348899999999999999998512234
Q ss_pred -----------------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf -----------------988999999961875553247897247885024379999985682
Q T0528 319 -----------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA 363 (388)
Q Consensus 319 -----------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~ 363 (388)
..+..+.++|++++|+|++|++.||+++++....+.|++++.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~v~f~G~tG~i~Fd~~G~r~~~~~~i~~~~~~~~ 359 (388)
T 2wjw_A 298 SRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP 359 (388)
T ss_dssp ------CCTTCSSCCCCTTHHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCEEEEECCCCCCCCCEEEEEEEECCEE
T ss_conf 55666676456777766309999999961832237533799999787777799999979978
No 16
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.7e-35 Score=226.01 Aligned_cols=324 Identities=10% Similarity=0.050 Sum_probs=240.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
++|+||.++|.+|. ....|+++|+|++|+.++.+.+ . +..++..|+..+.+.+.+|+++ +|.+|+||.+
T Consensus 1 ~~i~IG~lf~~~~~------~~~~a~~~Av~~iN~~~~~l~~-~---~~~~~~~d~~~~~~~~~~l~~~-gV~aiiGp~~ 69 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD------QEYSAFRVGMVQFSTSEFRLTP-H---IDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD 69 (823)
T ss_dssp CEEEEEEEEETTCH------HHHHHHHHHHHHTCCSSCEEEE-E---EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCC
T ss_pred CEEEEEEEECCCCH------HHHHHHHHHHHHHHCCCCCCCC-E---EEEEECCCHHHHHHHHHHHHHC-CCEEEECCCC
T ss_conf 93899998789974------9999999999998339996376-4---8997089989999999999866-9879998997
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF 175 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~ 175 (388)
|..+.+++++++..++|+|+++.+ ....+++++|+.|+. ..+++..+ +.+|+++++|++ +++|......+
T Consensus 70 s~~~~~v~~~~~~~~iP~is~s~~-----~~~~~~~~~r~~p~~---~~ai~~ll~~~~W~~vaiiyd-~~~g~~~~~~~ 140 (823)
T 3kg2_A 70 KKSVNTITSFCGTLHVSFITPSFP-----TDGTHPFVIQMRPDL---KGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAV 140 (823)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCC-----CSSCCSSEEECSCCC---HHHHHHHHHHTTCSEEEEEEC-GGGCTHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC-----CCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEEEE-CCHHHHHHHHH
T ss_conf 189999999998679819984537-----898896699958289---999999999879989999997-95538899999
Q ss_pred HHHHHHCCCEEEEEEEC----CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf 99998639859984101----75433128999999984335764589996052078999999971530036211235530
Q T0528 176 KEALAKTGATLATEEYV----PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI 251 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~----~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
.+.+.+.|++|...... ...++|+..++.++++..+ +++++.........++.++...+.......+...+..
T Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~~---~viv~~~~~~~~~~il~~a~~~g~~~~~~~wi~~~~~ 217 (823)
T 3kg2_A 141 LDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKE---RRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLG 217 (823)
T ss_dssp HHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTC---CEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSB
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9999976998999998715888744779999998762599---8899993527878999999973778874699983740
Q ss_pred HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHCC-----
Q ss_conf 12221101005525740225787789899999999999708--------89875689999999999999996189-----
Q T0528 252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--------APPDFFTAGGFSAAMAVVTAVQKAKS----- 318 (388)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~a~~~Yda~~~~~~Ai~~ag~----- 318 (388)
.......................++++..+.|.++|++.+. ..++.++..+||++++++.|+++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~yDAv~~~A~Al~~~~~~~~~~ 297 (823)
T 3kg2_A 218 FTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEI 297 (823)
T ss_dssp SSSSCCSSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 01333200103452377888525896677889999999875427888887766466666559999999999987436665
Q ss_pred -----------------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf -----------------988999999961875553247897247885024379999985682
Q T0528 319 -----------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA 363 (388)
Q Consensus 319 -----------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~ 363 (388)
..+..+.++|++++|+|++|++.||.+++.....+.|++++.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~Gdr~~~~~~i~~l~~~~~ 359 (823)
T 3kg2_A 298 SRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP 359 (823)
T ss_dssp CCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEECCCCCCCCCCCCCEEECCCCC
T ss_conf 56778787566777764419999998851641035661797989986654211023226763
No 17
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=100.00 E-value=1e-35 Score=230.95 Aligned_cols=308 Identities=11% Similarity=0.040 Sum_probs=225.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
|||+++|+||+++.+|+.+++|+++|++ |++|+|+++|++++|.++ +.+++.++++.+|+||.+|..
T Consensus 2 kIG~llPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~a---a~~~l~~~~v~~ViGp~~s~~ 68 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQN 68 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC----------CCCCEEEEEECCCCHHHH---HHHHHHHCCCCEEEECCCCCC
T ss_conf 1999938988417889999999998556----------998459997089989999---999999779969998257752
Q ss_pred HHHHHH-HHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 778889-99864977864267761015777653489734765788899999997-1893899985487432234789999
Q T0528 100 ALADLP-VAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKE 177 (388)
Q Consensus 100 ~~~~~~-~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~ 177 (388)
+..+.+ ..+..++|++.++++... ...+++|+..++...++..++.++. ++++++++++++++||+.+...+++
T Consensus 69 ~~~~~~~~~~~~~v~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vaii~~~~~~g~~~~~~~~~ 144 (325)
T 2h4a_A 69 LDVILADPAQIQGMDVLALNATPNS----RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 144 (325)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCSSC----CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCC----CCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 1345578887267069954656654----467860222069499999999999971882899992686488999999999
Q ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHH--HH
Q ss_conf 9986398599841017543312899999998433576458999605207899999997153003621123553012--22
Q T0528 178 ALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILP--AL 255 (388)
Q Consensus 178 ~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 255 (388)
.+++.|++++....++.. +......+++.. .++.+++..........+.++...+................ ..
T Consensus 145 ~~~~~G~~v~~~~~~~~~--~~~~~~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (325)
T 2h4a_A 145 RWQQLAGTDANIRYYNLP--ADVTYFVQENNS---NTTALYAVASPTELAEXKGYLTNIVPNLAIYASSRASASATNTNT 219 (325)
T ss_dssp HHHHHHSSCCEEEEESST--THHHHHHHHSTT---CCCEEEECCCHHHHHHHHHHHTTTCTTCEEEECGGGCCHHHHTCH
T ss_pred HHHHCCCEEEEEEECCCC--CHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 999869969899967996--256788876414---998799805727777899999860667866752144457510144
Q ss_pred HCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 11010055257402257877898999999999997088987568999999999999999618998899999996187555
Q T0528 256 AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDT 335 (388)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~g 335 (388)
......+|..+....+...+.++..++|.++|+..++..+ +.+.+||+++++.... + .+++++..|+|
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~gyDa~~l~~~~~-~---------~~~~~~~~~~G 287 (325)
T 2h4a_A 220 DFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQLMR--LYAMGADAWLLINQFN-E---------LRQVPGYRLSG 287 (325)
T ss_dssp HHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCHHHHH--HHHHHHHHHHHHHTHH-H---------HHHSTTCCEEE
T ss_pred CHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHH-H---------HCCCCCCCCCC
T ss_conf 4377648959987645679994899999998885469983--1999999999999999-8---------52568998154
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 324789724788502437999998568
Q T0528 336 PKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 336 ~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
++|+++||+ +|...+.+.++|++.+.
T Consensus 288 ~tG~~~fd~-~G~~~r~~~~~q~~~G~ 313 (325)
T 2h4a_A 288 LTGILSADT-NCNVERDMTWYQYQDGA 313 (325)
T ss_dssp TTEEEEECT-TCBEEEECEEEEEETTE
T ss_pred CEEEEEECC-CCCEEECCEEEEEECCE
T ss_conf 728899999-99873352699998998
No 18
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.1e-32 Score=212.81 Aligned_cols=343 Identities=14% Similarity=0.077 Sum_probs=246.3
Q ss_pred CCEEEEEEECCCCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHC-
Q ss_conf 835899982466770----------567899999999999999855797698589999972788989999999999864-
Q T0528 17 DDLKIALIYGKTGPL----------EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQD- 85 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~----------a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~- 85 (388)
-.|.||.++|+.... ...|.....++++|+|+||+++++|+|++|.++++|+.+++..+++.+.+++..
T Consensus 13 GDi~IGglFp~h~~~~~~~~c~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~ 92 (555)
T 2e4u_A 13 GDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRAS 92 (555)
T ss_dssp CSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 99899999988617888766655242232799999999999997899989997899999850798489999999998602
Q ss_pred -----------------------CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf -----------------------885121147751337788899986497786426776101577765348973476578
Q T0528 86 -----------------------DGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQ 142 (388)
Q Consensus 86 -----------------------~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 142 (388)
.+|.+|+||.+|..+.++++++...++|+|+++++++.++++..+|++||+.|++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~avIGp~~S~~s~~va~~~~~~~ip~Is~~ats~~lsd~~~yp~f~Rt~psd~~ 172 (555)
T 2e4u_A 93 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 172 (555)
T ss_dssp C--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEECCCHHH
T ss_conf 54555534235543211012577746999998756999999999987488411576067121356778756998686788
Q ss_pred HHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--HHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8899999997-1893899985487432234789999998639859984101754331--289999999843357645899
Q T0528 143 DAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTD--FTAVGQRLFDALKDKPGKKII 219 (388)
Q Consensus 143 ~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d--~~~~~~~i~~~~~d~~~~~~~ 219 (388)
++.+++..+. .+|++|++|+.++++|+.....+++.+++.|+.|+..+.++.+..+ +...+.++. ......++++
T Consensus 173 ~~~a~~~ll~~f~W~~V~ii~~~~~~g~~~~~~~~~~~~~~~i~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~a~vIv~ 250 (555)
T 2e4u_A 173 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELL--QKPNARVVVL 250 (555)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHH--TCTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH--HHCCCCEEEE
T ss_conf 89999999998399589999952736889999999889866854999999079885777777788887--6247858999
Q ss_pred EEECCHHHHHHHHHHHHCCHHCCCCCCCCC-CHHHHHHCHHHCCCEEEEECCCC---------------CCCCCHHHHHH
Q ss_conf 960520789999999715300362112355-30122211010055257402257---------------87789899999
Q T0528 220 WVIWAGGGDPLTKLQDMDPKRYGIELSTGG-NILPALAAYKRLPGMEGATYYYY---------------DIPKNPINEWL 283 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~~~f 283 (388)
.........++.++...+.....+...... .............|......... ..+.++..++|
T Consensus 251 ~~~~~~~~~ll~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~i~~f~~~~~~l~~~~~~~n~~~~~~ 330 (555)
T 2e4u_A 251 FMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDF 330 (555)
T ss_dssp ECCHHHHHHHHHHHHHTTCCCEEEECTTTTTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHH
T ss_pred ECCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 64779999999999984997648999641455400103433255069974124205215657542361336777689999
Q ss_pred HHHHHH--------------------HHCCCCCHHHHHHHHHHHHHHHHHHHH---------C------CCCH-HHHHHH
Q ss_conf 999999--------------------708898756899999999999999961---------8------9988-999999
Q T0528 284 VTEHQK--------------------RFNAPPDFFTAGGFSAAMAVVTAVQKA---------K------STDT-EKLIAA 327 (388)
Q Consensus 284 ~~~~~~--------------------~~g~~p~~~a~~~Yda~~~~~~Ai~~a---------g------~~~~-~~v~~a 327 (388)
.+.+.. ..+..++.++.+.|||++++|.||.+. + ..++ +.+...
T Consensus 331 w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (555)
T 2e4u_A 331 WEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEY 410 (555)
T ss_dssp HHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99972775456767543456545556566543147999999999999999998761066665445554346889999999
Q ss_pred HHCCC-------CCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 96187-------555324789724788502437999998568
Q T0528 328 MEGME-------FDTPKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 328 L~~~~-------~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
|+.+. |+|.+|+++||.+ ++....+.|++++..+
T Consensus 411 l~~v~~~~~~~~~~g~~g~V~Fd~n-Gd~~~~Y~I~n~q~~~ 451 (555)
T 2e4u_A 411 LLKIQFTAPFNPNKGADSIVKFDTF-GDGMGRYNVFNLQQTG 451 (555)
T ss_dssp TTCEEECCSSSCCSSSCCEEECCTT-SCCCCCEEEEEEECTT
T ss_pred HHHHEEECCCCCCCCCCCEEEECCC-CCCCCEEEEEEEEECC
T ss_conf 9985470432442688855996757-8764307899999779
No 19
>3jpw_A Glutamate [NMDA] receptor subunit epsilon-2; amino terminal domain, zinc, phenylethanolamine, calcium, cell junction, cell membrane; HET: NAG; 2.80A {Rattus norvegicus} PDB: 3jpy_A*
Probab=99.94 E-value=1.5e-25 Score=169.94 Aligned_cols=308 Identities=10% Similarity=0.064 Sum_probs=213.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
.|+||++++ |.. ...+++++++++|.....+. .++..+..| .+||..++..+.+|+..++|.+|+|+..|
T Consensus 3 ~v~i~~~~~--~~~------~~~~~~~a~~~~n~~~~~l~-~~~~~~~~~-~~~p~~~~~~~c~l~~~~~v~~ivg~~~s 72 (363)
T 3jpw_A 3 SIGIAVILV--GTS------DEVAIKDAHEKDDFHHLSVV-PRVELVAMN-ETDPKSIITRICDLMSDRKIQGVVFADDT 72 (363)
T ss_dssp CCEEEEEEE--SCS------SCCCCCCGGGCCCSTTCSSC-CEEEEEEES-CCSHHHHHHHHHHHHHHSCCSCEEEEECS
T ss_pred EEEEEEEEC--CCH------HHHHHHHHHHHHHCCCCCCC-CCEEEEEEC-CCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 278999977--855------89999998634431577324-522699952-68979999999998740896799946998
Q ss_pred H---HHHHHHHHHHHCCCEEEECCCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHH
Q ss_conf 3---3778889998649778642677610-15777653489734765788899999997-18938999854874322347
Q T0528 98 A---AALADLPVAEENKKILIVEPAVADQ-ITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGV 172 (388)
Q Consensus 98 ~---~~~~~~~~~~~~~vp~i~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~ 172 (388)
. .+..+..++...+||+|++.++++. ++....++++||+.|++..++.+++..+. .+|+++++|++++++++...
T Consensus 73 ~~~~~a~~v~~i~~~~~IP~is~~~~~~~~~~~~~~~~~f~r~~ps~~~q~~a~~~ll~~~~W~~v~vi~~~~~~~~~~~ 152 (363)
T 3jpw_A 73 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFV 152 (363)
T ss_dssp CCTHHHHHHHHHHHHHTCEEEEEEGGGGSCCTTCCTTCEEEESSCCHHHHHHHHHHHHHTTTCCEEEEEECSSTTHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
T ss_conf 60788999999986379888983688865345666787199981898999999999998667729999997581278899
Q ss_pred HHHHHHHHHCCCEEEEEEECCC--CCC-CHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCC
Q ss_conf 8999999863985998410175--433-1289999999843357645899960520789999999715300362112355
Q T0528 173 AAFKEALAKTGATLATEEYVPT--TTT-DFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGG 249 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~--~~~-d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (388)
..+++.+++.|+++.....++. +.. ++..+..+++.. .+.++++.........++.++.+.+.......+....
T Consensus 153 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~---~~~vivl~~~~~~a~~il~~a~~~gm~~~~~~wi~t~ 229 (363)
T 3jpw_A 153 NKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 229 (363)
T ss_dssp HHHHHHHHTCSSCCEEEEEEECCCCC----CCSHHHHTTC---CCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECH
T ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999975974899999716888542589999999737---9989999666899888899999828778877999937
Q ss_pred CHHHH--HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 30122--21101005525740225787789899999999999708898756899999999999999961-----------
Q T0528 250 NILPA--LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKA----------- 316 (388)
Q Consensus 250 ~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~a----------- 316 (388)
..... ........|...... .. ....+....||++.+++.|+..-
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~---~~-------------------~~~~~~~~~~dav~~~a~a~~~~~~~~~~~~~~~ 287 (363)
T 3jpw_A 230 LVAGDTDTVPSEFPTGLISVSY---DE-------------------WDYGLPARVRDGIAIITTAASDMLSEHSFIPEPK 287 (363)
T ss_dssp HHHCSTTCCCTTSCSSEEEEEC---SS-------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred CCCCCCCCCCHHCCCCEEEECC---CC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3203554331002001230034---56-------------------3134444467689999999999864300266300
Q ss_pred ---------CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf ---------8998899999996187555324789724788502437999998568
Q T0528 317 ---------KSTDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 317 ---------g~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
...+++.+.++|++.+|+| |++.||++++.....+.|++++.++
T Consensus 288 ~~~~~~~~~~~~~g~~l~~~l~~~~f~G--g~v~Fd~~Gdr~~~~~~I~~l~~~~ 340 (363)
T 3jpw_A 288 SSCYNTHEKRIYQSNMLNRYLINVTFEG--RDLSFSEDGYQMHPKLVIILLNKER 340 (363)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHTTCEETT--EECCBCTTSBBSSCCEEEEEECTTS
T ss_pred CCHHHCCCCCCCCHHHHHHHHHCCEEEC--CEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 5643456899888999999970054717--1799899997568668999994788
No 20
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=99.18 E-value=7.1e-09 Score=69.79 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 03568358999824667705678999999999999998557976985899999727889899999999998648851211
Q T0528 13 VHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI 92 (388)
Q Consensus 13 ~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~ 92 (388)
+.++++.|||++..++.|. + .++.+|++ +.+++.|+ ..|++|++++.|+++|++...+.+++|+.+ ++++|+
T Consensus 3 ~~~~~~~ki~i~~~~~~p~--~-~~~~~g~~---~~l~~~G~-~~g~~v~~~~~da~~d~~~~~~~~~~l~~~-~~d~Ii 74 (302)
T 2qh8_A 3 AIMAKTAKVAVSQIVEHPA--L-DATRQGLL---DGLKAKGY-EEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLV 74 (302)
T ss_dssp ----CCEEEEEEESSCCHH--H-HHHHHHHH---HHHHHTTC-CBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEE
T ss_pred HHHCCCCEEEEEEEECCHH--H-HHHHHHHH---HHHHHCCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 2115773699998507867--9-99999999---99996097-579857999945888999999999998735-987899
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCC-CCCCCC--CCCCEEEEEC-CCHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Q ss_conf 47751337788899986497786426776-101577--7653489734-7657888999999971893899985487432
Q T0528 93 GTSSSAAALADLPVAEENKKILIVEPAVA-DQITGE--KWNRYIFRTG-RNSSQDAISNAVAIGKQGVTIATLAQDYAFG 168 (388)
Q Consensus 93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g 168 (388)
.. .+.....+........++.+...... ...... ...+++.... .........+...+..+.+++++++.++..+
T Consensus 75 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgv~~~~~~~~~l~~~~~l~p~~k~v~vi~~~~~~~ 153 (302)
T 2qh8_A 75 GI-ATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEAN 153 (302)
T ss_dssp EE-SHHHHHHHHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHH
T ss_pred EC-CCHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 83-98799999863134785267532640201221234789708999874109999999998588997899995797243
Q ss_pred H-HHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2-3478999999863985998410
Q T0528 169 R-DGVAAFKEALAKTGATLATEEY 191 (388)
Q Consensus 169 ~-~~~~~~~~~~~~~g~~vv~~~~ 191 (388)
. .....+++.++..|.+++....
T Consensus 154 ~~~~~~~~~~~~~~~g~~vv~~~~ 177 (302)
T 2qh8_A 154 AVSLMELLKLSAAKHGIKLVEATA 177 (302)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 799999999999874987999715
No 21
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=99.08 E-value=4.7e-07 Score=58.85 Aligned_cols=207 Identities=11% Similarity=0.043 Sum_probs=123.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS 96 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~ 96 (388)
|+|||++.|-+ ...+-..+..|++-+.+.. | +++++.|++.+++.-.+.+++|+.+ ++++|+ .|..
T Consensus 2 P~~Ig~~~~~~--~~~~~~~~~~~~~~~a~~~---G-------~~~~~~~~~~~~~~q~~~i~~li~~-~vD~IIv~~~~ 68 (306)
T 2vk2_A 2 PLTVGFSQVGS--ESGWRAAETNVAKSEAEKR---G-------ITLKIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVV 68 (306)
T ss_dssp CCEEEEEECCC--CSHHHHHHHHHHHHHHHHH---T-------CEEEEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSS
T ss_pred CEEEEEEECCC--CCHHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 84999996899--8999999999999999985---9-------9899995899999999999999975-99999983256
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH----HCCCEEEEEECC--CHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899999997----189389998548--743223
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG----KQGVTIATLAQD--YAFGRD 170 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~i~~d--~~~g~~ 170 (388)
+.........+.+.++|++....... ..+...++.....+....+...+.++. .+..++.++... ......
T Consensus 69 ~~~~~~~~~~a~~~giPvv~~d~~~~---~~~~~~~~~~v~~~~~~~g~~~a~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 145 (306)
T 2vk2_A 69 ATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID 145 (306)
T ss_dssp SSSCHHHHHHHHHTTCCEEEESSCCC---CSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 54116889999861997577445445---555666520584264266677778877532556654332224667643778
Q ss_pred HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHCCHH
Q ss_conf 47899999986398-599841017543312899999998433576458999605207-89999999715300
Q T0528 171 GVAAFKEALAKTGA-TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMDPKR 240 (388)
Q Consensus 171 ~~~~~~~~~~~~g~-~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 240 (388)
-...+++.+++.+. ++...........+.......+.+.....|....+....... .-.+.++.+.+...
T Consensus 146 R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~i~ai~~~~d~~a~g~~~al~~~G~~~ 217 (306)
T 2vk2_A 146 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP 217 (306)
T ss_dssp HHHHHHHHTTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999750365510232033101589999999886512476432001478499999999999860148
No 22
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.71 E-value=1.1e-05 Score=50.61 Aligned_cols=210 Identities=11% Similarity=-0.012 Sum_probs=112.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512-11477
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTS 95 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~ 95 (388)
|++|||+++|-.. ..+-..+..|++-+.++. |. +++... ..|+..-.+..+.|+.+ ++++ |+.+.
T Consensus 1 e~~~Ig~i~~~~~--~~~~~~~~~g~~~~a~~~--------g~--~~i~~~-~~d~~~q~~~i~~li~~-~~dgiIi~~~ 66 (306)
T 8abp_A 1 ENLKLGFLVKQPE--EPWFQTEWKFADKAGKDL--------GF--EVIKIA-VPDGEKTLNAIDSLAAS-GAKGFVICTP 66 (306)
T ss_dssp -CEEEEEEESCTT--SHHHHHHHHHHHHHHHHH--------TE--EEEEEE-CCSHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred CCEEEEEEECCCC--CHHHHHHHHHHHHHHHHC--------CC--EEEEEC-CCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 9739999979998--989999999999999972--------99--999987-99999999999999975-9899999678
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH----HHHHHHHHHHCC----CEEEEEEC--CC
Q ss_conf 513377888999864977864267761015777653489734765788----899999997189----38999854--87
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQD----AISNAVAIGKQG----VTIATLAQ--DY 165 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~v~~i~~--d~ 165 (388)
.+.........+.+.++|++.............. ........+.... +..+...+.+++ .++.++.. +.
T Consensus 67 ~~~~~~~~~~~a~~~gIPvv~~~~~~~~~~~~~~-~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 145 (306)
T 8abp_A 67 DPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM-DTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 145 (306)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBC-TTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 7523599999999759988999625544556666-776466204999999999999998433057665269998079877
Q ss_pred HHHHHHHHHHHHHHHHCCCE---EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf 43223478999999863985---99841017543312899999998433576458999605207899999997153003
Q T0528 166 AFGRDGVAAFKEALAKTGAT---LATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY 241 (388)
Q Consensus 166 ~~g~~~~~~~~~~~~~~g~~---vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
...+.-...+++.+++.+.. ++....-......-......+....++....+++...-......+.++.+.+....
T Consensus 146 ~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~a~g~i~al~~~G~~~~ 224 (306)
T 8abp_A 146 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 224 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 0899999999999997599954330101453035679999999997489998237447663999999999997699999
No 23
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=98.68 E-value=1.3e-05 Score=50.15 Aligned_cols=201 Identities=14% Similarity=0.068 Sum_probs=110.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf 8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~ 98 (388)
|||++.|... ..+-..+..|++-+.++. |.++.+...++..++.+-.+..++++.+.++++|+ .|..+.
T Consensus 2 kI~~v~~~~~--~~f~~~~~~G~~~~a~~~--------g~~~~~~~~~~~~d~~~q~~~l~~~i~~~~~D~iii~~~~~~ 71 (276)
T 3ksm_A 2 KLLLVLKGDS--NAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE 71 (276)
T ss_dssp EEEEECSCSS--STHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT
T ss_pred EEEEEECCCC--CHHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 8999959999--999999999999999983--------998999958998799999999999997089989999379857
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-----CCCEEEEEECC--CHHHHHH
Q ss_conf 3778889998649778642677610157776534897347657888999999971-----89389998548--7432234
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-----QGVTIATLAQD--YAFGRDG 171 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~d--~~~g~~~ 171 (388)
........+.+.++|+++..... .... .......+....+...+.++.. +.++++++..+ .......
T Consensus 72 ~~~~~i~~~~~~gIPvv~~~~~~---~~~~---~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~~r 145 (276)
T 3ksm_A 72 DLTPSVAQYRARNIPVLVVDSDL---AGDA---HQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQR 145 (276)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCC---SSSC---SSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEECCCCC---CCCC---CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 77999999997799499736644---6787---64089844146799999999987322798479995376776407789
Q ss_pred HHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 78999999863-98599841017543312899999998433576458999605207899999997153
Q T0528 172 VAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 172 ~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
...+++.+++. +.+++...........-...+.++....++ +. .++..........+.++.+.+.
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 146 EQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPT-ID-GLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSC-CC-EEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCC-CC-EEEECCHHHHHHHHHHHHHCCC
T ss_conf 877999998679864202110102258899998876414887-63-5662571999999999997599
No 24
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.64 E-value=1.7e-05 Score=49.45 Aligned_cols=207 Identities=11% Similarity=0.040 Sum_probs=113.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS 96 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~ 96 (388)
.+|||+++|-.. . .+-..+..|++-..+ +.+| +++.+.|.+.|+..-.+.+++|+.+ ++++|+ .|..
T Consensus 2 ~~kIgv~~~~~~-~-~f~~~~~~gi~~~a~---~~~g------~~l~~~~~~~d~~~q~~~le~li~~-~~D~iiv~~~d 69 (309)
T 2fvy_A 2 DTRIGVTIYKYD-D-NFMSVVRKAIEQDAK---AAPD------VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVD 69 (309)
T ss_dssp CEEEEEEESCTT-S-HHHHHHHHHHHHHHH---TCTT------EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSS
T ss_pred CCEEEEEECCCC-C-HHHHHHHHHHHHHHH---HCCC------EEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf 988999979997-9-999999999999998---7699------1899973999999999999999976-99999976876
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-------------CCCEEEEEEC
Q ss_conf 133778889998649778642677610157776534897347657888999999971-------------8938999854
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-------------QGVTIATLAQ 163 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~ 163 (388)
+.........+.+.++|++.......... ............+..........++.+ +..+++++.-
T Consensus 70 ~~~~~~~l~~a~~~gIpvV~~d~~~~~~~-~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~~g 148 (309)
T 2fvy_A 70 PAAAGTVIEKARGQNVPVVFFNKEPSRKA-LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 148 (309)
T ss_dssp GGGHHHHHHHHHTTTCCEEEESSCCCHHH-HHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEC
T ss_conf 03039999999986992999668766321-24577634997460898999999999975521340010589738999968
Q ss_pred C--CHHHHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 8--74322347899999986398599841017--54331289999999843357645899960520789999999715
Q T0528 164 D--YAFGRDGVAAFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 164 d--~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
+ ....+.-...+...++..+.++....... .+...-...++.+...........++...-....-.+.++.+.+
T Consensus 149 ~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~i~~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 149 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp STTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf 887721889998899999851777503578731211056899999998557799973899588578899999999679
No 25
>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn}
Probab=98.62 E-value=2e-05 Score=49.08 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=123.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC---C
Q ss_conf 6835899982466770567899999999999999855797698589999972788989999999999864885121---1
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA---I 92 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i---~ 92 (388)
.-|.+||++++- -.. .+-..+.+|++-+.++. | +++++.|++.|+.+..+.+++++.+. ++++ +
T Consensus 3 ~~~~~i~~~~~~-l~n-pf~~~~~~g~~~~a~~~---g-------~~~~~~~~~~d~~~q~~~~~~~i~~~-~d~iii~~ 69 (332)
T 2rjo_A 3 LGQTTLACSFRS-LTN-PYYTAFNKGAQSFAKSV---G-------LPYVPLTTEGSSEKGIADIRALLQKT-GGNLVLNV 69 (332)
T ss_dssp CCCCEEEEEESC-TTS-HHHHHHHHHHHHHHHHH---T-------CCEEEEECTTCHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCCCEEEEEECC-CCC-HHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 899689999588-888-89999999999999971---9-------98999958999999999999999659-99899982
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEEC--CCH
Q ss_conf 477513377888999864977864267761015777-6534897347657888999999971---8938999854--874
Q T0528 93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEK-WNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQ--DYA 166 (388)
Q Consensus 93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~--d~~ 166 (388)
.|..+.......+.+.+.++|++............. ...+......+....+...+.++.+ +..+++++.- ++.
T Consensus 70 ~p~d~~~~~~~i~~a~~~gIpVV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~G~~~a~~l~~~~~~~~~v~~i~g~~~~~ 149 (332)
T 2rjo_A 70 DPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNV 149 (332)
T ss_dssp CCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCH
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 77645767999999998699299963666654333457772158961789999999999998659963899547886542
Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHH-CCCCCCEEEEEEECCH-HHHHHHHHHHHCC
Q ss_conf 3223478999999863-985998410175433128999999984-3357645899960520-7899999997153
Q T0528 167 FGRDGVAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDA-LKDKPGKKIIWVIWAG-GGDPLTKLQDMDP 238 (388)
Q Consensus 167 ~g~~~~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~-~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (388)
....-...|+..+++. +.+++....-..+...-...+..+... .+ ..-.+...... ..-.+..+.+.+.
T Consensus 150 ~~~~R~~G~~~~l~~~~~~~i~~~~~~~~~~~~a~~~~~~~l~~~~p---~i~~I~~~~d~~a~ga~~al~~~G~ 221 (332)
T 2rjo_A 150 PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNS---KIKGVWAANDDMALGAIEALRAEGL 221 (332)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGG---GEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 89999999999998789985888862342438999999998850699---7728996796899999999997699
No 26
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.51 E-value=4e-05 Score=47.32 Aligned_cols=199 Identities=13% Similarity=0.115 Sum_probs=114.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf 589998246677056789999999999999985579769858999997278898999999999986488512-1147751
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSSS 97 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~S 97 (388)
|+||++.+.+ .. +-..+.+|++.+.++. |.++++ ..++..|+.+-.+.+++++.+ ++++ |+.|..+
T Consensus 2 ~tigvi~~~~--np-f~~~~~~G~~~aa~~~--------g~~v~~-~~~~~~d~~~q~~~i~~~i~~-~~DgIii~~~~~ 68 (313)
T 2h3h_A 2 LTIGVIGKSV--HP-YWSQVEQGVKAAGKAL--------GVDTKF-FVPQKEDINAQLQMLESFIAE-GVNGIAIAPSDP 68 (313)
T ss_dssp CEEEEECSCS--SH-HHHHHHHHHHHHHHHH--------TCEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSST
T ss_pred EEEEEECCCC--CH-HHHHHHHHHHHHHHHH--------CCEEEE-EECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 6999968999--98-9999999999999980--------997999-979999999999999999976-999999977622
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEE--CCCHHHHHHH
Q ss_conf 33778889998649778642677610157776534897347657888999999971---893899985--4874322347
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLA--QDYAFGRDGV 172 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~--~d~~~g~~~~ 172 (388)
.........+.+.++|++......+ .... ..+ ...+....+...+.++.+ ....+.++. .+....+.-.
T Consensus 69 ~~~~~~l~~a~~~gipvv~~d~~~~---~~~~--~~~-v~~d~~~~g~~a~~~~~~~~~~~~~~~i~~g~~~~~~~~~R~ 142 (313)
T 2h3h_A 69 TAVIPTIKKALEMGIPVVTLDTDSP---DSGR--YVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRI 142 (313)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCT---TSCC--SCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEEECCCC---CCCC--EEE-EECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 1125999999975998699824568---7762--249-925729999999999999744336413403777875599999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 899999986398599841017543312899999998433576458999605207899999997153
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
..+++.+++.+.++.....-..........+.++.+..++. ..++........-.+.++++.+.
T Consensus 143 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~I~~~~d~~a~ga~~al~~ag~ 206 (313)
T 2h3h_A 143 QGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDL--DAFFGVYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTC--CEEEECSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCC--CEEEECCCHHHHHHHHHHHHCCC
T ss_conf 99999863168611002267677777876899999629897--09997683689999999997799
No 27
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.46 E-value=5.4e-05 Score=46.50 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=114.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
..|||++...++| .+ .++..|++-.+++ . | +.++.+++++.|.++|++...+.+++|+.+ ++++|+. ..+
T Consensus 2 ~~~Igv~~~~~~p--~~-d~~~~Gi~~~l~~---~-G-~~~~~v~i~~~~a~~d~~~~~~~~~~l~~~-~~d~ii~-~~~ 71 (295)
T 3lft_A 2 NAKIGVLQFVSHP--SL-DLIYKGIQDGLAE---E-G-YKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVG-IAT 71 (295)
T ss_dssp CEEEEEEECSCCH--HH-HHHHHHHHHHHHH---T-T-CCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEE-ESH
T ss_pred CCEEEEEECCCCH--HH-HHHHHHHHHHHHH---C-C-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEE-CCC
T ss_conf 9769999787773--89-9999999999997---5-9-987607999967988999999999999746-9867984-484
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCC-CCCCC--CCCCEEEE-ECCCHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHH
Q ss_conf 3377888999864977864267761-01577--76534897-347657888999999971893899985487-4322347
Q T0528 98 AAALADLPVAEENKKILIVEPAVAD-QITGE--KWNRYIFR-TGRNSSQDAISNAVAIGKQGVTIATLAQDY-AFGRDGV 172 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~-~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~g~~~~ 172 (388)
..+..+........++++....... ..... ....++.. ...............+....+++++++.+. .......
T Consensus 72 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 151 (295)
T 3lft_A 72 PAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHHHHHHHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
T ss_conf 78999999754137605898455212331100368983799985289999999999748788646896697531299999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf 899999986398599841017543312899999998433576458999605207899999997153003
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY 241 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
..+++.+...+.+++..... ...+ ..+.+....+ .++.++ .............+...+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~l~~~~~-~~dai~-~~~~~~~~~~~~al~~~~~~~~ 213 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP--STNE---IASTVTVMTS-KVDAIW-VPIDNTIASGFPTVVSSNQSSK 213 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES--SGGG---HHHHHHHHTT-TCSEEE-ECSCHHHHHTHHHHHHHTTTTC
T ss_pred HHHHHHHHHCCCEEEEECCC--CHHH---HHHHHHHCCC-CCEEEE-ECCCHHHHHHHHHHHHHHCCCC
T ss_conf 99998666417568750466--6799---9999983678-861999-7387068889999998520247
No 28
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.30 E-value=0.00013 Score=44.15 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=103.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-C
Q ss_conf 568358999824667705678999999999999998557976985899999727889899999999998648851211-4
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-G 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G 93 (388)
...+++||+++|-. ..+.+-..+..|++..+++. | + ...+.....++..|+..-.+..++++.+. +++++ .
T Consensus 40 ~~k~~~I~vi~p~~-~~s~y~~~~~~g~~~~~~~~---g--~-~~~i~~~~~~~~~d~~~q~~~i~~~i~~~-~DgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQ-QVSDYWVRNIASFEKRLYKL---N--I-NYQLNQVFTRPNADIKQQSLSLMEALKSK-SDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCC-SSCCHHHHHHHHHHHHHHHT---T--C-CEEEEEEECCTTCCHHHHHHHHHHHHHTT-CSEEEEC
T ss_pred CCCCCEEEEEECCC-CCCHHHHHHHHHHHHHHHHC---C--C-CEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 28996799997999-87889999999999999976---9--9-47999985489869999999999999739-9989993
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHH
Q ss_conf 775133778889998649778642677610157776534897347657888999999971---893899985487-4322
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQDY-AFGR 169 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~d~-~~g~ 169 (388)
+..+.....+..+.....+|++...- ............+.....+....+...+.++.. +.++++++.... ..+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~Vv~~~~-~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~~~~~i~~i~g~~~~~~~ 190 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNI-TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISD 190 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETC-CSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECC-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 78622199999999809985998057-67642123578864996699999999999999846997479981599985699
Q ss_pred HHHHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 34789999998639-85998410175433128999999984335
Q T0528 170 DGVAAFKEALAKTG-ATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 170 ~~~~~~~~~~~~~g-~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
.-...|.+++++.+ .+++..........+-...+.++....++
T Consensus 191 ~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 234 (342)
T 1jx6_A 191 VRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPD 234 (342)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCCSSHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999998632788515983799999999999997542566
No 29
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.30 E-value=0.00014 Score=44.08 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=112.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
+||+++|-.. ..+-..+.+|++-+.++. | +++++.++..++..-.+..++|+......+++.+.....
T Consensus 3 tIgvvvp~~~--~~f~~~i~~gi~~~~~~~---g-------~~~~~~~~~~d~~~~~~~l~~l~~~~~~~ii~~~~~~~~ 70 (283)
T 2ioy_A 3 TIGLVISTLN--NPFFVTLKNGAEEKAKEL---G-------YKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDA 70 (283)
T ss_dssp EEEEEESCSS--SHHHHHHHHHHHHHHHHH---T-------CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTT
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999857898--989999999999999985---9-------999999489998999999999996198735304521122
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEEC--CCHHHHHHHHH
Q ss_conf 778889998649778642677610157776534897347657888999999971---8938999854--87432234789
Q T0528 100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQ--DYAFGRDGVAA 174 (388)
Q Consensus 100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~--d~~~g~~~~~~ 174 (388)
.......+.+.++|.+....... ... .+.....+....+...+.++.+ +.++++++.. +......-...
T Consensus 71 ~~~~~~~~~~~~~~~v~~~~~~~---~~~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~g 144 (283)
T 2ioy_A 71 VVTAIKEANSKNIPVITIDRSAN---GGD---VVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKG 144 (283)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SSC---CSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---CCC---CCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 12778887742795699815788---777---542895089999999999999862899879999799998699999999
Q ss_pred HHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 9999986398-59984101754331289999999843357645899960520789999999715
Q T0528 175 FKEALAKTGA-TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 175 ~~~~~~~~g~-~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
|++++++.+. +++..........+-...+.++.+..++ +. .++...-..+...+..+.+.+
T Consensus 145 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~-ai~~~~d~~a~~~~~a~~~~g 206 (283)
T 2ioy_A 145 FDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPK-ID-AVFAQNDEMALGAIKAIEAAN 206 (283)
T ss_dssp HHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSC-CC-EEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-CC-EEEECCHHHHHHHHHHHHHCC
T ss_conf 999998789981677752777889999999999964979-85-899667488899999999749
No 30
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.15 E-value=0.00028 Score=42.22 Aligned_cols=201 Identities=10% Similarity=0.052 Sum_probs=112.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT 94 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~ 94 (388)
.+.-+||++.+-.. ..+.....+|++.+.++. | +++++.|++.|++.-.+.+++++.+ ++++|+ .|
T Consensus 3 ~~gk~Igvi~~~~~--~~f~~~~~~g~~~~a~~~--------G--~~~~~~~~~~d~~~q~~~i~~~i~~-~~dgiii~~ 69 (291)
T 3l49_A 3 LEGKTIGITAIGTD--HDWDLKAYQAQIAEIERL--------G--GTAIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQL 69 (291)
T ss_dssp CTTCEEEEEESCCS--SHHHHHHHHHHHHHHHHT--------T--CEEEEEECTTCHHHHHHHHHHHHHH-CCSEEEEES
T ss_pred CCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHC--------C--CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 88999999958999--989999999999999973--------9--9999993899999999999999975-999999927
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HH--CCCEEEEEEC--CCHHHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-71--8938999854--874322
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GK--QGVTIATLAQ--DYAFGR 169 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~v~~i~~--d~~~g~ 169 (388)
..+.........+.+.++|++......+ .... ....+....+...+.++ .+ +..+++++.. .....+
T Consensus 70 ~~~~~~~~~i~~~~~~gipvv~~~~~~~-----~~~~---~v~~d~~~~g~~~a~~l~~~~~~~~~v~~~~g~~~~~~~~ 141 (291)
T 3l49_A 70 GNLDVLNPWLQKINDAGIPLFTVDTATP-----HAIN---NTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCK 141 (291)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEESCCCT-----TCSE---EEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEECCCCCC-----CCCC---EEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 8403058999999986991996677678-----8788---7996359999999999999749997799992675552256
Q ss_pred HHHHHHHHHHHHCC-CEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHC
Q ss_conf 34789999998639-85998410175433128---99999998433576458999605207-89999999715
Q T0528 170 DGVAAFKEALAKTG-ATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMD 237 (388)
Q Consensus 170 ~~~~~~~~~~~~~g-~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (388)
.-...|++.+++.+ .+++..........+.. .....+....+..++...+....... .-.+..+.+.+
T Consensus 142 ~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ai~~~~d~~a~g~~~al~~~g 214 (291)
T 3l49_A 142 IRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAG 214 (291)
T ss_dssp HHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf 9999999999878998245335203478768999999999998612467675699678678999999999829
No 31
>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg}
Probab=98.15 E-value=0.00029 Score=42.17 Aligned_cols=203 Identities=10% Similarity=0.068 Sum_probs=111.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCCC
Q ss_conf 835899982466770567899999999999999855797698589999972788989999999999864885121-1477
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA-IGTS 95 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i-~G~~ 95 (388)
.+.+|.++.-.......+-..+.+|++.+.++. |.++.+...|+..|+.+-.+.++.++.. ++++| +.+.
T Consensus 4 k~~~i~~i~~v~d~sn~f~~~~~~G~~~~a~~~--------g~~v~~~~~~~~~d~~~q~~~i~~li~~-~~DgIIi~~~ 74 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAAA 74 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECCS
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 871899998558999889999999999999974--------9989999689988999999999999975-9999999778
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCEEEEEEC--CCHHHHH
Q ss_conf 513377888999864977864267761015777653489734765788899999997---18938999854--8743223
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG---KQGVTIATLAQ--DYAFGRD 170 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~--d~~~g~~ 170 (388)
...........+...++|++....... ... .......+..........++. .....++++.. +......
T Consensus 75 ~~~~~~~~~~~~~~~~ipvv~~d~~~~---~~~---~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~ 148 (289)
T 3brs_A 75 DYEKTYDAAKEIKDAGIKLIVIDSGMK---QDI---ADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMD 148 (289)
T ss_dssp CTTTTHHHHTTTGGGTCEEEEESSCCS---SCC---CSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCC---CCC---CCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 621048999999867994899704568---777---64599717288999999999983568866999957876741678
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCH-HHHHHHHHHHHC
Q ss_conf 4789999998639859984101754331289999999843357645899960520-789999999715
Q T0528 171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAG-GGDPLTKLQDMD 237 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 237 (388)
-...+++.+++.+.+....................+....++ .-.+...... +.-.+..+.+.+
T Consensus 149 R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ai~~~~d~~a~g~~~al~~~g 213 (289)
T 3brs_A 149 REEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPD---ISVMVGLNQYSATGAARAIKDMS 213 (289)
T ss_dssp HHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTT---EEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999966997421002551143799999999723899---87522587599999999999779
No 32
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=98.14 E-value=0.00029 Score=42.10 Aligned_cols=203 Identities=12% Similarity=0.030 Sum_probs=112.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+=+||+++|.+-....+-.++..|++-+.++ . |. ++++.+...+++...+..+.|..+ ++++++-..
T Consensus 17 ~~s~~Igll~~~~~~~~~f~~~l~~gi~~~a~~---~-----g~--~l~~~~~~~~~~~~~~~i~~l~~~-~~dgiIi~~ 85 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE---K-----GR--QLLLADGKHSAEEERQAIQYLLDL-RCDAIMIYP 85 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHH---T-----TC--EEEEECCTTSHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 899979999588664686999999999999998---5-----99--999996899979999999999964-998899747
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-7189389998548--74322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~~ 172 (388)
.........+.+...++|++....... . ...+ ....+....+...+.++ .++.+++++|..+ ......-.
T Consensus 86 ~~~~~~~~~~~~~~~~~PvV~~~~~~~---~-~~~~---~v~~d~~~~~~~~~~~l~~~G~~~i~~l~g~~~~~~~~~R~ 158 (296)
T 3brq_A 86 RFLSVDEIDDIIDAHSQPIMVLNRRLR---K-NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL 158 (296)
T ss_dssp SSSCHHHHHHHHHTCSSCEEEESCCCS---S-SGGG---EECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCC---C-CCCC---EEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf 667748888888635986899367678---8-8887---89966189999999999870488599995887770279999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 8999999863985998410175433128---999999984335764589996052078999999971530
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
..|++.+++.+..+...... ....+.. ....++.+..+ .+.. ++......+...+..+.+.+..
T Consensus 159 ~g~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~-~~~a-i~~~~d~~a~g~~~~l~~~g~~ 225 (296)
T 3brq_A 159 AGYKDALAQHGIALNEKLIA-NGKWTPASGAEGVEMLLERGA-KFSA-LVASNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp HHHHHHHHTTTCCCCGGGEE-CCCSSHHHHHHHHHHHHTC---CCSE-EEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCC-CCEE-EEECCHHHHHHHHHHHHHCCCC
T ss_conf 99999999759998820675-277888999999999985588-7427-9856869999999999985999
No 33
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.10 E-value=0.00036 Score=41.58 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=109.8
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00356835899982466770567899999999999999855797698589999972788989999999999864885121
Q T0528 12 AVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 12 ~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
+..+..+.+|++++|..-... +-..+..|++.+.++.+.. +..+.+.. .+..|+..-.+.+++++.+ +++.+
T Consensus 2 sLa~~k~~~i~~l~P~~~~~~-y~~~i~~Gi~~aa~e~~~~-----~v~v~~~~-~~~~d~~~~~~~l~~li~~-~vDgi 73 (304)
T 3gbv_A 2 SLASNKKYTFACLLPKHLEGE-YWTDVQKGIREAVTTYSDF-----NISANITH-YDPYDYNSFVATSQAVIEE-QPDGV 73 (304)
T ss_dssp -----CCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHTGGG-----CEEEEEEE-ECSSCHHHHHHHHHHHHTT-CCSEE
T ss_pred CCCCCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCC-----CEEEEEEE-CCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 587899888999988988898-9999999999999973788-----87999995-8989999999999999973-99989
Q ss_pred -CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCEEEEEECC---
Q ss_conf -1477513377888999864977864267761015777653489734765788899999997---189389998548---
Q T0528 92 -IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG---KQGVTIATLAQD--- 164 (388)
Q Consensus 92 -~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~d--- 164 (388)
+.+............+.+.++|++....... +.. .......+....+...+.++. ++.++++++...
T Consensus 74 ii~~~~~~~~~~~~~~~~~~~i~vv~~~~~~~---~~~---~~~~v~~d~~~~g~~a~~~l~~~~~~~~~i~~~~~~~~~ 147 (304)
T 3gbv_A 74 MFAPTVPQYTKGFTDALNELGIPYIYIDSQIK---DAP---PLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEG 147 (304)
T ss_dssp EECCSSGGGTHHHHHHHHHHTCCEEEESSCCT---TSC---CSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTT
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEEECCC---CCC---CCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 97278831218999999866996799840467---663---221224660777888777777640456408999257778
Q ss_pred ---CHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf ---7432234789999998639--85998410175433128999999984335
Q T0528 165 ---YAFGRDGVAAFKEALAKTG--ATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 165 ---~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
....+.-...+++.+++.+ .++.....-.............+....++
T Consensus 148 ~~~~~~~~~R~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
T 3gbv_A 148 VIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPD 200 (304)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 87761267887637899997475654203540651355557999999964999
No 34
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=98.07 E-value=0.00042 Score=41.19 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=112.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf 8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~ 98 (388)
+||+++|-.. ...+ ..+..|++-+.++. |. ++++.++..|+..-.+..++++.+ ++++++ .+....
T Consensus 3 tIgvvv~~~~-npf~-~~v~~gi~~~a~~~--------g~--~~~~~~~~~d~~~~~~~l~~~~~~-~~d~ii~~~~~~~ 69 (271)
T 2dri_A 3 TIALVVSTLN-NPFF-VSLKDGAQKEADKL--------GY--NLVVLDSQNNPAKELANVQDLTVR-GTKILLINPTDSD 69 (271)
T ss_dssp EEEEEESCSS-SHHH-HHHHHHHHHHHHHH--------TC--EEEEEECTTCHHHHHHHHHHHTTT-TEEEEEECCSSTT
T ss_pred EEEEEECCCC-CHHH-HHHHHHHHHHHHHC--------CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf 8999928898-9899-99999999999985--------99--899995899999999999999861-8764432122222
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CC--CEEEEEECC--CHHHHHHHH
Q ss_conf 3778889998649778642677610157776534897347657888999999971-89--389998548--743223478
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QG--VTIATLAQD--YAFGRDGVA 173 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~v~~i~~d--~~~g~~~~~ 173 (388)
........+.+.++|++....... ... .......+..........++.+ .. .++.++... ....+.-..
T Consensus 70 ~~~~~i~~~~~~~ip~V~~~~~~~---~~~---~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 143 (271)
T 2dri_A 70 AVGNAVKMANQANIPVITLDRQAT---KGE---VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 143 (271)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCS---SSC---CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCC---CCC---CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 316899999863775323565555---455---42378522236799999999996799956999948876638999987
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 9999998639859984101754331289999999843357645899960520789999999715
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
.+++.+...+.+.............-......+....++ +.. ++..........+..+.+.+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a-i~~~~d~~a~g~~~a~~~~g 205 (271)
T 2dri_A 144 GFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQA-VFAQNDEMALGALRALQTAG 205 (271)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCHHHHHHHHHHHHHHCTT-CCE-EEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCC-CEE-EECCCHHHHHHHHHHHHHHC
T ss_conf 666665213455522442011111120046676422568-425-63267688888999999848
No 35
>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}
Probab=97.95 E-value=0.0007 Score=39.84 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=110.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT 94 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~ 94 (388)
..+=.||+++|-... .+-..+..|++-++++ . |. +++++++..++..-.+..+.++.. ++++++ .+
T Consensus 18 ~~s~~Igvv~p~~~~--~f~~~~~~~i~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~ 84 (293)
T 2iks_A 18 GRTRSIGLVIPDLEN--TSYTRIANYLERQARQ---R-----GY--QLLIACSEDQPDNEMRCIEHLLQR-QVDAIIVST 84 (293)
T ss_dssp CCCCEEEEEESCSCS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 899989999399988--7999999999999998---6-----99--999995899979999999999866-998899970
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEEC--CCHHHHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-18938999854--87432234
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQ--DYAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~--d~~~g~~~ 171 (388)
... ........+...++|++....... . . .+.....++...+...+.++. .+.++++++.. +......-
T Consensus 85 ~~~-~~~~~~~~~~~~~ipvv~~~~~~~---~-~---~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r 156 (293)
T 2iks_A 85 SLP-PEHPFYQRWANDPFPIVALDRALD---R-E---HFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLR 156 (293)
T ss_dssp SSC-TTCHHHHTTTTSSSCEEEEESCCC---T-T---TCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHH
T ss_pred CCC-CCHHHHHHHHHCCCCEEEEECCCC---C-C---CCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
T ss_conf 554-457999999857993899951456---6-7---7764732608899999999885488569999326767613567
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 78999999863985998410175433128999999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|++.+++.+.++.....-.....+....+.++....++ + ..++......+.-.+..+.+.+.+
T Consensus 157 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~ai~~~~d~~a~g~~~al~~~g~~ 222 (293)
T 2iks_A 157 EQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPM-P-QALFTTSFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp HHHHHHHHTTCCCCEEEEEESSSCHHHHHHHHHHHTTTSCC-C-SEEEESSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC-C-CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 69999999976996123002110056677789998740688-6-410047789999999999984999
No 36
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.89 E-value=0.00091 Score=39.16 Aligned_cols=204 Identities=7% Similarity=-0.020 Sum_probs=109.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf 3568358999824667705678999999999999998557976985899999727889899999999998648851211-
Q T0528 14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI- 92 (388)
Q Consensus 14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~- 92 (388)
.+...-+||+++|--. . .+-..+..|++-+.+. .| .++++.++..++..-.+.+++|+.+ ++++|+
T Consensus 4 ~~~~~~~IGvi~~~~~-~-~f~~~~~~gi~~~a~~---~g-------y~l~~~~~~~~~~~e~~~i~~l~~~-~vdgiii 70 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDK-H-EFAQRLINAFKAEAKA---NK-------YEALVATSQNSRISEREQILEFVHL-KVDAIFI 70 (293)
T ss_dssp -----CEEEEEESCSC-S-HHHHHHHHHHHHHHHH---TT-------CEEEEEECSSCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred CCCCCCEEEEEEECCC-C-HHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 8899998999997898-7-9999999999999998---79-------9899997999989999999999976-9989997
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHH----HH-HHHHHCC---CEEEEEE--
Q ss_conf 477513377888999864977864267761015777653489734765788899----99-9997189---3899985--
Q T0528 93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAIS----NA-VAIGKQG---VTIATLA-- 162 (388)
Q Consensus 93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~---~~v~~i~-- 162 (388)
.+..+.........+.+.++|++....... ... .......+....... ++ ....+.+ .+++.+.
T Consensus 71 ~~~~~~~~~~~l~~a~~~~IPvV~~~~~~~---~~~---~~~~v~~~~~~~g~~~a~~l~~~~~~~~g~~~~~~~~~~g~ 144 (293)
T 3l6u_A 71 TTLDDVYIGSAIEEAKKAGIPVFAIDRMIR---SDA---VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGT 144 (293)
T ss_dssp ECSCTTTTHHHHHHHHHTTCCEEEESSCCC---CTT---CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCC---CCC---CCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 156630159999999976992999887788---776---33056246699999999998777899728887508998489
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 48743223478999999863985998410175-43312899999998433576458999605207899999997153
Q T0528 163 QDYAFGRDGVAAFKEALAKTGATLATEEYVPT-TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 163 ~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~-~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
.+....+.-...|++.+++.+...+....... ...+-...+.++....++ +.. ++......+.-.+..+.+.+.
T Consensus 145 ~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~a-I~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 145 ANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIP-FDA-VYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp TTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCC-CSE-EEESSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCC-CEE-EEECCCHHHHHHHHHHHHCCC
T ss_conf 987689999985344455438853001100121078899999863214788-459-997781899999999997699
No 37
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.82 E-value=0.0012 Score=38.49 Aligned_cols=208 Identities=9% Similarity=0.040 Sum_probs=112.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf 589998246677056789999999999999985579769858999997278898999999999986488-5121147751
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDG-ADIAIGTSSS 97 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~-v~~i~G~~~S 97 (388)
..|.++.|-......+ ..+.+|++.+.++. | +++++.+++.|+..-.+.+++++.+.. ..+++.....
T Consensus 4 ~sVvf~~P~~~~~pF~-~~i~~gie~aa~~~--------G--~~l~i~~s~~d~~~q~~~i~~li~~~~~~~~i~~~~~~ 72 (350)
T 3h75_A 4 TSVVFLNPGNSTETFW-VSYSQFMQAAARDL--------G--LDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CEEEEEECSCTTCHHH-HHHHHHHHHHHHHH--------T--CEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred EEEEEECCCCCCCHHH-HHHHHHHHHHHHHC--------C--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 7999986998889899-99999999999973--------9--98999948999999999999998479986999977842
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCC-------CCCCCCEEEEECCCHHHHHHHHHHH-HHH-------CCCEEEEEE
Q ss_conf 3377888999864977864267761015-------7776534897347657888999999-971-------893899985
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQIT-------GEKWNRYIFRTGRNSSQDAISNAVA-IGK-------QGVTIATLA 162 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~v~~i~ 162 (388)
.....+...+.+.++|++.......... ......++-....++...+...+.+ +.+ +..+++++.
T Consensus 73 ~~~~~i~~~a~~~gIPvV~id~~~~~~~~~~~~~~~~~~~~~v~~v~~dn~~~G~~~a~~li~~~~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 03699999999779949992665565310000135434676411253676999999999999863555338864799995
Q ss_pred C--CCHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 4--8743223478999999863-985998410175433128999999984335764589996052078999999971530
Q T0528 163 Q--DYAFGRDGVAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 163 ~--d~~~g~~~~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
. .+.....=...|++++++. +.+++....-......-.....++.+..++ + ..+++..-..+.-.+.++.+.+.+
T Consensus 153 g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~p~-~-~aI~~~nD~~A~Ga~~Al~~~G~~ 230 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPK-T-QLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT-E-EEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCC-C-CEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 78677277776665533443078754110001111147999999999974999-7-399988779999999999975999
No 38
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.75 E-value=0.0015 Score=37.77 Aligned_cols=205 Identities=12% Similarity=0.072 Sum_probs=107.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
.+.+-+||+++|.......+-..+.+|++-+++ +. |. ++++.....+.+. .....+++...++++++=.
T Consensus 5 t~kt~~Iglv~~~~~~~~~f~~~~i~gi~~~~~---~~-----gy--~l~v~~~~~~~~~-~~~~~~~l~~~~vdgiIl~ 73 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLS---TT-----QY--HLVVTPHIHAKDS-MVPIRYILETGSADGVIIS 73 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHT---TS-----SC--EEEECCBSSGGGT-THHHHHHHHHTCCSEEEEE
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH---HC-----CC--EEEEEECCCCHHH-HHHHHHHHHCCCCCEEEEE
T ss_conf 899997999937676678599999999999999---86-----99--8999968999699-9999999863897779874
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-7189389998548--7432234
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~ 171 (388)
..+.. ......+.+.++|++....... ... .+ ....+....+.....++ .++.++++++..+ ......-
T Consensus 74 ~~~~~-~~~~~~~~~~~iPvV~i~~~~~---~~~-~~---~V~~d~~~a~~~a~~~L~~~g~~~I~~i~~~~~~~~~~~r 145 (288)
T 3gv0_A 74 KIEPN-DPRVRFMTERNMPFVTHGRSDM---GIE-HA---FHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHA 145 (288)
T ss_dssp SCCTT-CHHHHHHHHTTCCEEEESCCCS---SCC-CE---EEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHH
T ss_pred CCCCC-HHHHHHHHHCCCCCEECCCCCC---CCC-CC---EEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH
T ss_conf 02332-1677877751497220011357---998-76---6853552567777777631253403687177433225666
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 78999999863985998410175433128999999984335764-589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPG-KKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|++++++.|.+......+ ....++......+.+.....+. ..+++..-..+...+..+.+.+..
T Consensus 146 ~~Gf~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 213 (288)
T 3gv0_A 146 RKGFNRGIRDFGLTEFPIDAV-TIETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHHHHTTCEECCCCSC-CTTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHCCHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 788899999863110033303-43211135778887654303577400113478888778887633301
No 39
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.70 E-value=0.0018 Score=37.32 Aligned_cols=207 Identities=13% Similarity=0.031 Sum_probs=112.6
Q ss_pred CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 568358999824667705---67899999999999999855797698589999972788989999999999864885121
Q T0528 15 AADDLKIALIYGKTGPLE---AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a---~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
...+-+||+++|-+.... .+-.++.+|++-+++. . |+ .+++.++..+++.-.+..+.+. +.++++|
T Consensus 4 ~~~t~~Igl~~~~~~~~~~~npf~~~~~~gi~~~a~~---~-----gy--~l~~~~~~~~~~~~~~~~~~l~-~~~vdgi 72 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ---H-----GY--GTQTTVSNNMNDLMDEVYKMIK-QRMVDAF 72 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT---T-----TC--EEEECCCCSHHHHHHHHHHHHH-TTCCSEE
T ss_pred CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHH-HCCCCEE
T ss_conf 6776989999906876665696899999999999998---5-----99--8999978999799999999999-6699849
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCC--HHH
Q ss_conf 14775133778889998649778642677610157776534897347657888999999-971893899985487--432
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQDY--AFG 168 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~--~~g 168 (388)
+-.. +.......+.+.+.++|++......... + ..+.....+....+.....+ ..++.+++++|.... ...
T Consensus 73 Ii~~-~~~~~~~~~~l~~~~iPvV~i~~~~~~~---~--~~~~~v~~d~~~~~~~~~~~l~~~G~~~I~~i~~~~~~~~~ 146 (295)
T 3hcw_A 73 ILLY-SKENDPIKQMLIDESMPFIVIGKPTSDI---D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVS 146 (295)
T ss_dssp EESC-CCTTCHHHHHHHHTTCCEEEESCCCSSG---G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHH
T ss_pred EEEE-CCCCCHHHHHHHHHHCCCEEEECCCCCC---C--CCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 9972-2553156788886401000253035667---7--65302222348888888887520132233224555432014
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 2347899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528 169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
+.-...|++++++.|.+..... ......+.....+++.......+ ...+++.....+...+..+.+.+.+
T Consensus 147 ~~r~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~a~g~~~~l~~~g~~ 217 (295)
T 3hcw_A 147 KDRIQGFETVASQFNLDYQIIE-TSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-ECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 5556889999987498511011-4554035666655554320357776422222201333335544203322
No 40
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=97.65 E-value=0.0022 Score=36.90 Aligned_cols=199 Identities=6% Similarity=-0.046 Sum_probs=108.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 58999824667705678999999999999998557976985899999727889899999999998648851211-47751
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSS 97 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S 97 (388)
=+|.++.+..|. .+-..+.+|++-+.++. |.++.+ +.++..|+..-.+.+++++.+ ++++|+ .+..+
T Consensus 5 k~i~~i~~~~~n--pf~~~~~~Gi~~~a~~~--------g~~~~~-~~~~~~d~~~q~~~i~~~i~~-~~DgIIi~~~~~ 72 (303)
T 3d02_A 5 KTVVNISKVDGM--PWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIAR-KVDAITIVPNDA 72 (303)
T ss_dssp EEEEEECSCSSC--HHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSCH
T ss_pred CEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEEEE-EECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 889999788999--79999999999999974--------998999-978999999999999999975-999899942584
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-H-CCC-EEEEEE--CCCHHHHHHH
Q ss_conf 3377888999864977864267761015777653489734765788899999997-1-893-899985--4874322347
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-K-QGV-TIATLA--QDYAFGRDGV 172 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~v~~i~--~d~~~g~~~~ 172 (388)
.........+.+.++|++....... ....+.....+........+.++. + +.+ .+.++. ........-.
T Consensus 73 ~~~~~~~~~~~~~gipvv~~~~~~~------~~~~~~~v~~d~~~~g~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (303)
T 3d02_A 73 NVLEPVFKKARDAGIVVLTNESPGQ------PSANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWA 146 (303)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCTTC------TTCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEECCCCCC------CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 1104899999976995884478888------7777409985739999999999999569981599942888866899999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHCC
Q ss_conf 899999986398599841017543312---899999998433576458999605207-899999997153
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDF---TAVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMDP 238 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~---~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 238 (388)
..+++.+++.+..+...........+. ......+.+..++ ...+....... .-.+.++.+.+.
T Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~---~~~i~~~~d~~a~g~~~a~~~~g~ 213 (303)
T 3d02_A 147 DLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPD---LKAVVSFGSNGPIGAGRAVKEKRA 213 (303)
T ss_dssp HHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTT---EEEEEESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC---CEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 9999999752886533115623786569999999999861998---518995685899999999997699
No 41
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=97.61 E-value=0.0025 Score=36.50 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=108.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Q ss_conf 98246677056789999999999999985579769858999997278898999999999986488512-11477513377
Q T0528 23 LIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSSSAAAL 101 (388)
Q Consensus 23 ~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~S~~~~ 101 (388)
++...+|. .+-..+..|++-+.++.| ..+.+. .....|+..-.+.+++++.+ ++++ |+.|..+....
T Consensus 9 ~v~~~~~~--~f~~~v~~G~~~~a~~~g--------~~l~~~-~~~~~d~~~q~~~i~~li~~-~~DgIIi~~~~~~~~~ 76 (305)
T 3g1w_A 9 MITFQSGM--DYWKRCLKGFEDAAQALN--------VTVEYR-GAAQYDIQEQITVLEQAIAK-NPAGIAISAIDPVELT 76 (305)
T ss_dssp EEESSTTS--THHHHHHHHHHHHHHHHT--------CEEEEE-ECSSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTTTH
T ss_pred EEECCCCC--HHHHHHHHHHHHHHHHCC--------CEEEEE-ECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHH
T ss_conf 99789998--299999999999999729--------979999-79999999999999999977-9999999678737789
Q ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHHHHHHHHHH
Q ss_conf 8889998649778642677610157776534897347657888999999971---893899985487-432234789999
Q T0528 102 ADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQDY-AFGRDGVAAFKE 177 (388)
Q Consensus 102 ~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~d~-~~g~~~~~~~~~ 177 (388)
.....+.+.++|++......+. .. .......+....+...+.++.+ +..+++++.... .....-...|+.
T Consensus 77 ~~l~~~~~~gIpvV~~d~~~~~---~~---~~~~v~~d~~~~g~~~~~~l~~~~~~~~~v~i~~~~~~~~~~~R~~gf~~ 150 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLFDSGAPD---SH---AHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE 150 (305)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT---SC---CSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCC---CC---CCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999869929998167776---77---64299516176689999999997145761999931243128999999999
Q ss_pred HHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 998639--859984101754331289999999843357645899960520789999999715
Q T0528 178 ALAKTG--ATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 178 ~~~~~g--~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
.+++.+ .+++....-......-...+.++.+..++. ..++..........+.++.+.+
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~p~~--~aI~~~~d~~a~g~~~al~~~g 210 (305)
T 3g1w_A 151 TLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNL--AGIFATEANGGVGVGDAVRLES 210 (305)
T ss_dssp HHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTE--EEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCC--CEEEECCCHHHHHHHHHHHHCC
T ss_conf 99875776631457516653588999999874038998--8899777489999999999769
No 42
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=97.58 E-value=0.0027 Score=36.31 Aligned_cols=198 Identities=11% Similarity=0.028 Sum_probs=108.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf 8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~ 98 (388)
|||+++|.- .. .+-..+..|++.+.++ . | +++.+.+++.++..-.+..++++.+ ++++|+ .+....
T Consensus 4 ~Igvv~p~~-~n-~f~~~~~~gi~~~a~~---~-----g--~~l~~~~~~~d~~~~~~~i~~l~~~-~vdgiii~~~~~~ 70 (290)
T 2fn9_A 4 KMAIVISTL-NN-PWFVVLAETAKQRAEQ---L-----G--YEATIFDSQNDTAKESAHFDAIIAA-GYDAIIFNPTDAD 70 (290)
T ss_dssp EEEEEESCS-SS-HHHHHHHHHHHHHHHH---T-----T--CEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCTT
T ss_pred EEEEEECCC-CC-HHHHHHHHHHHHHHHH---C-----C--CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf 899992899-89-9999999999999998---5-----9--9899995899989999999999974-9996885303541
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH----HHC-----CCEEEEEE--CCCHH
Q ss_conf 37788899986497786426776101577765348973476578889999999----718-----93899985--48743
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI----GKQ-----GVTIATLA--QDYAF 167 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~v~~i~--~d~~~ 167 (388)
........+.+.++|++....... ... ........+....+.....++ .++ ..++..+. ..+..
T Consensus 71 ~~~~~l~~~~~~gipvv~~~~~~~---~~~--~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (290)
T 2fn9_A 71 GSIANVKRAKEAGIPVFCVDRGIN---ARG--LAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQP 145 (290)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCS---CSS--SSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCC---CCC--CCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH
T ss_conf 028999999976991999768866---556--765299447899999999998886412345565530565237877707
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 22347899999986398599841017543-31289999999843357645899960520789999999715
Q T0528 168 GRDGVAAFKEALAKTGATLATEEYVPTTT-TDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
...-...+++.++..+............. .+-.....++....++ + ..++...-..+.-.+.++.+.+
T Consensus 146 ~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ai~~~~d~~a~g~~~a~~~~g 214 (290)
T 2fn9_A 146 TWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPE-I-KAIWCGNDAMALGAMKACEAAG 214 (290)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT-C-CEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC-C-EEEEECCHHHHHHHHHHHHHCC
T ss_conf 8899989999997468876047983430268899999998864537-5-4999778499999999999729
No 43
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.22 E-value=0.0075 Score=33.66 Aligned_cols=211 Identities=9% Similarity=0.014 Sum_probs=111.6
Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 78511003568358999824667705678999999999999998557976985899999727889899999999998648
Q T0528 7 ALATTAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDD 86 (388)
Q Consensus 7 ~l~~~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~ 86 (388)
.+.+.....+.+-.||+++|.-... .+...+..|++-+.+ +.| . ++++++...+++...+..+.|+...
T Consensus 2 ~~~Ar~L~~~~s~~Igliv~~~~~~-~f~~~~~~gi~~~a~---~~g-----~--~l~i~~~~~~~~~~~~~~~~l~~~~ 70 (301)
T 3miz_A 2 SLAARLIRSSRSNTFGIITDYVSTT-PYSVDIVRGIQDWAN---ANG-----K--TILIANTGGSSEREVEIWKMFQSHR 70 (301)
T ss_dssp ----------CCCEEEEEESSTTTC-CSCHHHHHHHHHHHH---HTT-----C--EEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHH---HCC-----C--EEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 8889999778999899995887679-799999999999999---779-----9--8999978999699999999987478
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC-
Q ss_conf 85121147751337788899986497786426776101577765348973476578889999999-7189389998548-
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD- 164 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d- 164 (388)
--.+|+-+..+.. ......+.++|++....... .....+ ....+....+...+.++ .++.++++++..+
T Consensus 71 ~dgiIi~~~~~~~---~~~~~~~~~ip~V~~~~~~~---~~~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~ 141 (301)
T 3miz_A 71 IDGVLYVTMYRRI---VDPESGDVSIPTVMINCRPQ---TRELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNP 141 (301)
T ss_dssp CSEEEEEEEEEEE---CCCCCTTCCCCEEEEEEECS---STTSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCT
T ss_pred CCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCC---CCCCCC---EEEECHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7689985133204---58999836999899933557---888887---89977899999999999982996799981786
Q ss_pred -CHHHHHHHHHHHHHHHHCCCE-----EEEEEECCCCC-CC-HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf -743223478999999863985-----99841017543-31-28999999984335764589996052078999999971
Q T0528 165 -YAFGRDGVAAFKEALAKTGAT-----LATEEYVPTTT-TD-FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDM 236 (388)
Q Consensus 165 -~~~g~~~~~~~~~~~~~~g~~-----vv~~~~~~~~~-~d-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 236 (388)
....+.-...|+..+.+.+.. +......+... .+ ......++....++ +. .++........-.+..+.+.
T Consensus 142 ~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-aii~~~d~~a~g~~~~l~~~ 219 (301)
T 3miz_A 142 ILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDR-PT-AIMSGNDEMAIQIYIAAMAL 219 (301)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTC-CS-EEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CC-CCCCCCHHHHHHHHHHHHHC
T ss_conf 55526676699999999859986762577402453035677999999999955999-98-44358899999999999985
Q ss_pred CCH
Q ss_conf 530
Q T0528 237 DPK 239 (388)
Q Consensus 237 ~~~ 239 (388)
+.+
T Consensus 220 g~~ 222 (301)
T 3miz_A 220 GLR 222 (301)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 999
No 44
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.18 E-value=0.0082 Score=33.41 Aligned_cols=206 Identities=11% Similarity=0.000 Sum_probs=105.3
Q ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 10035683589998246677056789999999999999985579769858999997278898999999999986488512
Q T0528 11 TAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI 90 (388)
Q Consensus 11 ~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~ 90 (388)
.+...+..=.||+++|. --...+-..+.+|++-.+.+ . |+.+.+...++..+.... ..++....++++
T Consensus 4 r~~~s~~~~~i~l~~~~-d~~~~~~~~l~~gi~~~l~~---~-----gy~~~l~~~~~~~~~~~~---~~~~~~~~~vdG 71 (289)
T 3g85_A 4 RSKNSQSKPTIALYWSS-DISVNIISRFLRGLQSKLAK---Q-----NYNYNVVICPYKTDCLHL---EKGISKENSFDA 71 (289)
T ss_dssp -------CCEEEEEEET-TSCGGGHHHHHHHHHHHHHH---T-----TTCSEEEEEEECTTCGGG---CGGGSTTTCCSE
T ss_pred CCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHH---C-----CCCEEEEECCCCHHHHHH---HHHHHHHCCCCE
T ss_conf 77644899989999687-56878999999999999998---6-----996799985897239999---999998579888
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HH
Q ss_conf 1147751337788899986497786426776101577765348973476578889999999-71893899985487--43
Q T0528 91 AIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AF 167 (388)
Q Consensus 91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~ 167 (388)
++-...+..... .......++|++...... +..++ ...+....+...+.++ .++.+++++|..+. ..
T Consensus 72 iIi~~~~~~~~~-~~~~~~~~iPvV~~~~~~------~~~~~---V~~D~~~~~~~~~~~L~~~G~r~i~~i~~~~~~~~ 141 (289)
T 3g85_A 72 AIIANISNYDLE-YLNKASLTLPIILFNRLS------NKYSS---VNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDA 141 (289)
T ss_dssp EEESSCCHHHHH-HHHHCCCSSCEEEESCCC------SSSEE---EEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHH
T ss_pred EEECCCCCCCHH-HHHHHCCCCCEEEEEECC------CCCCE---EEECCHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
T ss_conf 997688888199-999854998689984168------99998---99787999999999898759844303576767858
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 22347899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528 168 GRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...-...|++++++.|.++....-+ ....++....+.+++.....+ ...++...-..+...+..+.+.+.+
T Consensus 142 ~~~R~~Gf~~a~~~~g~~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 213 (289)
T 3g85_A 142 MDNRNKGFIETCHKNGIKISENHII-AAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHHHHHHTTCBCCGGGEE-ECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999889987169963120123-57632004889998764116887510027889999999999985999
No 45
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.16 E-value=0.0087 Score=33.26 Aligned_cols=201 Identities=7% Similarity=-0.041 Sum_probs=109.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
+.-+||+++|-- .. .+-..+.+|++-++++ .| . +++++++..+++.-.+..+.|+.. ++++++-...
T Consensus 2 ~~~tIgvi~p~~-~~-~~~~~~~~~i~~~~~~---~g-----y--~l~l~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~ 68 (275)
T 3d8u_A 2 NAYSIALIIPSL-FE-KACAHFLPSFQQALNK---AG-----Y--QLLLGYSDYSIEQEEKLLSTFLES-RPAGVVLFGS 68 (275)
T ss_dssp --CEEEEEESCS-SC-HHHHHHHHHHHHHHHH---TS-----C--EECCEECTTCHHHHHHHHHHHHTS-CCCCEEEESS
T ss_pred CCEEEEEEECCC-CC-HHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 871999992988-77-6999999999999998---69-----9--899996899989999999999964-9989999089
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899999997-189389998548--743223478
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRDGVA 173 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~~~~ 173 (388)
+. ...........++|++....... .. .+.....+....+...+.++. ++.++++++... ......-..
T Consensus 69 ~~-~~~~~~~l~~~~~pvV~i~~~~~----~~---~~~~V~~D~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~ 140 (275)
T 3d8u_A 69 EH-SQRTHQLLEASNTPVLEIAELSS----KA---SYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLH 140 (275)
T ss_dssp CC-CHHHHHHHHHHTCCEEEESSSCS----SS---SSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHH
T ss_pred CC-CHHHHHHHHHCCCCEEEECCCCC----CC---CCCEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 89-98999999976998999878788----88---887899658999999999998635863876157776168899988
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 999999863985998410175433128999999984335764-589996052078999999971530
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPG-KKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.|+.++++.+....... ......+.......+.+.....+. ..++...-..+.-.+..+...+..
T Consensus 141 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (275)
T 3d8u_A 141 GWQSAMIENYLTPDHFL-TTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLK 206 (275)
T ss_dssp HHHHHHHHTTCCCCCEE-ECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 99999998099952100-2456542778999999876540454079975829999999999981887
No 46
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.10 E-value=0.01 Score=32.89 Aligned_cols=189 Identities=9% Similarity=-0.033 Sum_probs=101.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
.||+++|-. . ..+-..+.+|++-++++. |+ ++++.++..|++.-.+..+.|+. .+++.++-...+..
T Consensus 4 ~Igviv~~~-~-~~~~~~~~~~i~~~~~~~--------gy--~~~i~~s~~d~~~~~~~l~~l~~-~~vdGiI~~~~~~~ 70 (255)
T 1byk_A 4 VVAIIVTRL-D-SLSENLAVQTMLPAFYEQ--------GY--DPIMMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGI 70 (255)
T ss_dssp EEEEEESCT-T-CHHHHHHHHHHHHHHHHH--------TC--EEEEEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTC
T ss_pred EEEEEECCC-C-CHHHHHHHHHHHHHHHHC--------CC--EEEEEECCCCHHHHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf 999996998-8-989999999999999986--------99--89999589998999999999996-59999996799931
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC---CHHHHHHHHHH
Q ss_conf 7788899986497786426776101577765348973476578889999999-7189389998548---74322347899
Q T0528 100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD---YAFGRDGVAAF 175 (388)
Q Consensus 100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d---~~~g~~~~~~~ 175 (388)
.. .+....++|++...-. ... +.....+....+...+.++ .++.+++++|... ....+.-...|
T Consensus 71 ~~---~~~~~~~~p~v~~~~~------~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~g~ 138 (255)
T 1byk_A 71 TE---EMLAHWQSSLVLLARD------AKG---FASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAY 138 (255)
T ss_dssp CT---TTSGGGSSSEEEESSC------CSS---CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHH
T ss_pred HH---HHHHHCCCCEEEEECC------CCC---CCEEEECHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 79---9999769999999357------899---98899888999999999999829972887454467752889999999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 999986398599841017543312899999998433576458999605207899999997153
Q T0528 176 KEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
++.+++.|.+...... . .+.....+.+.+.....+..++ ...-..+.-.+..+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~~~~~aii-~~~d~~A~g~~~~l~~~g~ 196 (255)
T 1byk_A 139 LAFCKAHKLHPVAALP-G---LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHTTCCCEEECC-C---SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCCCCC-C---CCHHHHHHHHHHHCCCCCCEEE-CCCHHHHHHHHHHHHHCCC
T ss_conf 9999986998411248-8---8778899999975146776230-1747889999999998299
No 47
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.09 E-value=0.01 Score=32.86 Aligned_cols=202 Identities=15% Similarity=0.061 Sum_probs=106.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972-78898999999999986488512114
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKD-DQSKPDLSKAALAEAYQDDGADIAIG 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D-~~~~~~~a~~~~~~li~~~~v~~i~G 93 (388)
...+=.||+++|.... .+-.++..|++-..++ . |.++ ++++ +.+++....+..+.|+.. ++++++-
T Consensus 5 ~~~s~~Igvv~p~~~~--~f~~~li~gi~~~a~~---~-----g~~l--~l~~~~~~d~~~~~~~i~~l~~~-~vdGvI~ 71 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRT--NFAQQILDGIQEEAHK---N-----GYNL--IIVYSGSADPEEQKHALLTAIER-PVMGILL 71 (290)
T ss_dssp ---CCEEEEECCCCSS--SHHHHHHHHHHHHHHT---T-----TCEE--EEEC----------CHHHHHHSS-CCSEEEE
T ss_pred CCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 9999989999499976--8999999999999998---5-----9989--99968999999999999999867-9888999
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC--HHHHH
Q ss_conf 77513377888999864977864267761015777653489734765788899999997-1893899985487--43223
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY--AFGRD 170 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~--~~g~~ 170 (388)
... .........+.+.++|++...... .. ..+ ....+....+...+.++. ++.++++++.... ...+.
T Consensus 72 ~~~-~~~~~~~~~l~~~~iPvV~~~~~~---~~--~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 142 (290)
T 3clk_A 72 LSI-ALTDDNLQLLQSSDVPYCFLSMGF---DD--DRP---FISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRK 142 (290)
T ss_dssp ESC-C----CHHHHHCC--CEEEESCC-----C--CSC---EEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHH
T ss_pred EEC-CCCHHHHHHHHHCCCCEEECCCCC---CC--CCC---EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 603-345599999984688789346668---99--998---899676899999999998739864886047743101578
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 478999999863985998410175433128999999984335764589996052078999999971530
Q T0528 171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
-...++..++..+.........+. ..+.......+...........++......+...+..+.+.+.+
T Consensus 143 r~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~l~~~G~~ 210 (290)
T 3clk_A 143 RLAGYKKALKEANIAINQEWIKPG-DYSYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIE 210 (290)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEECC-CSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCCHHEECC-CCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999982997762000115-45478999998764137533067327779999999999873356
No 48
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=96.99 E-value=0.013 Score=32.29 Aligned_cols=203 Identities=15% Similarity=0.054 Sum_probs=108.1
Q ss_pred CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 568358999824667705---67899999999999999855797698589999972788989999999999864885121
Q T0528 15 AADDLKIALIYGKTGPLE---AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a---~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
.+.+-+||+++|.+.+.. .+-..+.+|++-+.++ .| +++++.++..+++.-.+ ..+++...+++++
T Consensus 19 ~~ks~~Igvi~~~~~~~~~~~pf~~~l~~gi~~~a~~---~g-------~~~~v~~~~~~~~~~~~-~~~~l~~~~vdgi 87 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV---RG-------YSTRMTVSENSGDLYHE-VKTMIQSKSVDGF 87 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH---HT-------CEEEECCCSSHHHHHHH-HHHHHHTTCCSEE
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHH-HHHHHHHCCCCEE
T ss_conf 0899979999777653223797999999999999997---59-------98999967887599999-9999983898889
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHH
Q ss_conf 147751337788899986497786426776101577765348973476578889999999-7189389998548--7432
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFG 168 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g 168 (388)
+-... .........+...++|++....... .. .+-....+....+...+.++ .++.+++++|... ....
T Consensus 88 Ii~~~-~~~~~~~~~l~~~~ipvv~v~~~~~---~~----~~~~v~~d~~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~ 159 (305)
T 3huu_A 88 ILLYS-LKDDPIEHLLNEFKVPYLIVGKSLN---YE----NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVT 159 (305)
T ss_dssp EESSC-BTTCHHHHHHHHTTCCEEEESCCCS---ST----TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHH
T ss_pred EEECC-CCCHHHHHHHHHCCCCEEEEEECCC---CC----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 98436-7875899999964999799950435---78----8777850718999999999987098765556799766079
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 23478999999863985998410175433128999999984335764589996052078999999971530
Q T0528 169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
..-...+++.+++.+.......... ..+......+........+.. +++..-..+.-.+..+.+.+.+
T Consensus 160 ~~R~~g~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a-i~~~~d~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 160 EDRSVGFKQYCDDVKISNDCVVIKS--MNDLRDFIKQYCIDASHMPSV-IITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECS--HHHHHHHC--------CCCSE-EEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEC--CCHHHHHHHHHHHHCCCCCCE-EECCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999998599965067513--421566899999957999863-3138889999999999975998
No 49
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A*
Probab=96.96 E-value=0.013 Score=32.15 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=94.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCCC-CCCC
Q ss_conf 83589998246677056789999999999999985579769858999997-278898999999999986488512-1147
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITK-DDQSKPDLSKAALAEAYQDDGADI-AIGT 94 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~-D~~~~~~~a~~~~~~li~~~~v~~-i~G~ 94 (388)
...|||++.+..+. .+-..+.+|++-+.++. |.++ ++. .+..|++.-.+.++.++.+ ++++ ++.+
T Consensus 2 ~~~~Ia~i~~~~~n--pf~~~~~~g~~~aa~~~--------G~~v--~~~~~~~~d~~~q~~~i~~~i~~-~~d~Iii~~ 68 (316)
T 1tjy_A 2 SAERIAFIPKLVGV--GFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSA 68 (316)
T ss_dssp CCCEEEEECSSSSS--HHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEE--EEEECCCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 77889999499999--99999999999999981--------9989--99979999999999999999973-997442013
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-H---HCCCEEEEEECCC--HHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-7---1893899985487--432
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-G---KQGVTIATLAQDY--AFG 168 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~i~~d~--~~g 168 (388)
..+.........+.+.++|++...+.... .. . ..+....+............ . .....+.++.... ...
T Consensus 69 ~d~~~~~~~~~~a~~~gipvv~~d~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (316)
T 1tjy_A 69 VSPDGLCPALKRAMQRGVKILTWDSDTKP---EC-R-SYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ 143 (316)
T ss_dssp SSSSTTHHHHHHHHHTTCEEEEESSCCCG---GG-C-SEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEECCCCCCC---CC-C-CEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCH
T ss_conf 33202456888765058520103543335---66-6-4034227568999999999998604555420000246764201
Q ss_pred HHHHHHHHHHHHH--CCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 2347899999986--3985998410175433128999999984335
Q T0528 169 RDGVAAFKEALAK--TGATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 169 ~~~~~~~~~~~~~--~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
......+...... ....++...........-......+....++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 189 (316)
T 1tjy_A 144 NQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPD 189 (316)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 3566667777650355332012330214678889999998732898
No 50
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.92 E-value=0.015 Score=31.90 Aligned_cols=199 Identities=9% Similarity=-0.011 Sum_probs=106.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-C
Q ss_conf 568358999824667705678999999999999998557976985899999727889899999999998648851211-4
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-G 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G 93 (388)
.+.+=.||+++|.+-| .+ .++.+|++-+.++ . |. ++++.++..+++.-.+..+.|+.+ ++++++ .
T Consensus 5 ~~ks~~Igvivp~~~p--f~-~~l~~gi~~~~~~---~-----g~--~~~v~~~~~~~~~~~~~i~~l~~~-~vdgiIl~ 70 (288)
T 2qu7_A 5 TGRSNIIAFIVPDQNP--FF-TEVLTEISHECQK---H-----HL--HVAVASSEENEDKQQDLIETFVSQ-NVSAIILV 70 (288)
T ss_dssp --CEEEEEEEESSCCH--HH-HHHHHHHHHHHGG---G-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TEEEEEEC
T ss_pred CCCCCEEEEEECCCCH--HH-HHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 8888989999089987--99-9999999999998---5-----99--899997999989999999999966-99899974
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHH
Q ss_conf 77513377888999864977864267761015777653489734765788899999997-189389998548--743223
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRD 170 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~ 170 (388)
+..+ ... ......++|++....... ... .+ ....+....+...+.++. ++.++++++... ......
T Consensus 71 ~~~~-~~~---~~~~~~~iPvV~~~~~~~---~~~-~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~ 139 (288)
T 2qu7_A 71 PVKS-KFQ---MKREWLKIPIMTLDRELE---STS-LP---SITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIG 139 (288)
T ss_dssp CSSS-CCC---CCGGGGGSCEEEESCCCS---SCC-CC---EEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHH
T ss_pred CCCC-HHH---HHHHHCCCCEEEEECCCC---CCC-CC---EEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 7322-789---999737998898403579---999-98---899672888999998777508740014426731025677
Q ss_pred HHHHHHHHHHHCCCEEEEEEE----CC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 478999999863985998410----17-5433128999999984335764589996052078999999971530
Q T0528 171 GVAAFKEALAKTGATLATEEY----VP-TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~----~~-~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
-...|++++++.|..+..... .. ....+.......++......+. .++...-..+.-.+..+...+.+
T Consensus 140 r~~g~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-aii~~~d~~a~g~~~al~~~g~~ 212 (288)
T 2qu7_A 140 RKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIK-GIVATNHLLLLGALQAIKESEKE 212 (288)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCC-EEEECSHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 77899999998399878332686112344103455899999998643364-32246059999999999984999
No 51
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=96.87 E-value=0.016 Score=31.66 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=106.4
Q ss_pred CEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35899982466770--5678999999999999998557976985899999727889899999999998648851211477
Q T0528 18 DLKIALIYGKTGPL--EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 18 ~IkIG~~~p~sG~~--a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
...||++.+-+-|. ..+-..+..++.- ++.+. |+.+- +.++..++.. .+.+.+++.+.+|++++-..
T Consensus 4 s~~i~~~~~~~~p~~~~~~~~~~~~~i~~---~a~~~-----gy~~~--i~~~~~~~~~-~~~~~~~l~~~~vDGiIl~~ 72 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVR---EAGAV-----NYFVL--PFPFSEDRSQ-IDIYRDLIRSGNVDGFVLSS 72 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHH---HHHHT-----TCEEE--ECCCCSSTTC-CHHHHHHHHTTCCSEEEECS
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHC-----CCEEE--EEECCCCHHH-HHHHHHHHHHCCCCEEEEEC
T ss_conf 69999981899955213889999999999---99987-----99999--9958999899-99999999838987899978
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-7189389998548--74322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~~ 172 (388)
... .......+.+.++|++......+ +.. .++ ...+....+...+.++ .++.++++++..+ ......-.
T Consensus 73 ~~~-~~~~~~~l~~~~iPvV~i~~~~~---~~~-~~~---V~~D~~~a~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 144 (287)
T 3bbl_A 73 INY-NDPRVQFLLKQKFPFVAFGRSNP---DWD-FAW---VDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRL 144 (287)
T ss_dssp CCT-TCHHHHHHHHTTCCEEEESCCST---TCC-CCE---EEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHH
T ss_pred CCC-CHHHHHHHHHCCCCEEEECCCCC---CCC-CCE---EEECHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHH
T ss_conf 989-98999999977997999887688---899-878---9838999999999999984996140167997552889999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 8999999863985998410175433128---999999984335764589996052078999999971530
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
..|++++++.|..+...... ....++. .....+....++.....++.....-+...+..+.+.+..
T Consensus 145 ~gf~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (287)
T 3bbl_A 145 QGYLEAMQTAQLPIETGYIL-RGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp HHHHHHHHHTTCCCCGGGEE-ECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 99999999749973212023-5677277799999999874766797199988769999999999985999
No 52
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=96.71 E-value=0.021 Score=30.92 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5683589998246-67705678999999999999998557976985899999-727889899999999998648851211
Q T0528 15 AADDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVIT-KDDQSKPDLSKAALAEAYQDDGADIAI 92 (388)
Q Consensus 15 a~~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~-~D~~~~~~~a~~~~~~li~~~~v~~i~ 92 (388)
.+.+=.||+++|. +++ .+ ..+.+|++..+++. |+.+-+.. .++..+.+...+..+.|... ++++++
T Consensus 5 ~~~~~~Igliip~~~~~--~~-~~l~~gi~~~~~~~--------g~~~~~~~~~~~~~~~e~~~~~i~~l~~~-~vdgiI 72 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGS--YY-GTILKQTDLELRAV--------HRHVVVATGCGESTPREQALEAVRFLIGR-DCDGVV 72 (290)
T ss_dssp ---CCEEEEECSCSCSH--HH-HHHHHHHHHHHHHT--------TCEEEEECCCSSSCHHHHHHHHHHHHHHT-TCSEEE
T ss_pred CCCCCEEEEECCCCCCH--HH-HHHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 79999799991898798--99-99999999999986--------99899996889864199999999999838-998899
Q ss_pred --CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHH
Q ss_conf --47751337788899986497786426776101577765348973476578889999999-7189389998548--743
Q T0528 93 --GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAF 167 (388)
Q Consensus 93 --G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~ 167 (388)
+...+ ......+.+.++|++......+ . ...+ ....+....+...+.++ .++.++++++... ...
T Consensus 73 i~~~~~~---~~~~~~l~~~~ipvV~i~~~~~---~-~~~~---~V~~D~~~~~~~a~~~L~~~G~r~i~~l~~~~~~~~ 142 (290)
T 2rgy_A 73 VISHDLH---DEDLDELHRMHPKMVFLNRAFD---A-LPDA---SFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASD 142 (290)
T ss_dssp ECCSSSC---HHHHHHHHHHCSSEEEESSCCT---T-SGGG---EECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHH
T ss_pred EECCCCC---HHHHHHHHHCCCCEEEEECCCC---C-CCCC---EEEECHHHHHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf 9667699---8999999963996899941578---8-8676---898341888999999999829943630578876611
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 223478999999863985998410175433128---999999984335764589996052078999999971530
Q T0528 168 GRDGVAAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.+.-...|...+++.+..+....... ...+.. .....+....+ .+. .++........-.+..+.+.+..
T Consensus 143 ~~~R~~gf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~a~g~~~al~~~g~~ 214 (290)
T 2rgy_A 143 NVERLDGFFDELARHGIARDSVPLIE-SDFSPEGGYAATCQLLESKA-PFT-GLFCANDTMAVSALARFQQLGIS 214 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGSCEEE-CCSSHHHHHHHHHHHHHHTC-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHCCC-CCCCHHHHHHHHHHHCCCCC-CCC-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 67765102203877099754100235-68898999999974201267-876-58863725554159999987998
No 53
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.54 E-value=0.028 Score=30.24 Aligned_cols=205 Identities=10% Similarity=-0.015 Sum_probs=102.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 5683589998246677056789999999999999985579769858999997278898999999999986488512-114
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIG 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G 93 (388)
...+-.||+++|.-+. .+-..+..|++-+.++ .| ..+++++...+++...+..+.|... ++++ |+-
T Consensus 4 ~~kt~~Igli~~~~~~--~f~~~l~~gi~~~a~~---~g-------~~l~~~~~~~~~~~~~~~~~~l~~~-~vdgiIv~ 70 (289)
T 1dbq_A 4 VNHTKSIGLLATSSEA--AYFAEIIEAVEKNCFQ---KG-------YTLILGNAWNNLEKQRAYLSMMAQK-RVDGLLVM 70 (289)
T ss_dssp ----CEEEEEESCTTS--HHHHHHHHHHHHHHHH---HT-------CEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEEE
T ss_pred CCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 8999979999599989--8999999999999998---69-------9999996899989999999998845-87668842
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHH--HHH
Q ss_conf 77513377888999864977864267761015777653489734765788899999997-189389998548743--223
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAF--GRD 170 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~--g~~ 170 (388)
+..... ..........++|++....... ..+. ......+..........++. ++.++++++...... ...
T Consensus 71 ~~~~~~-~~~~~~~~~~~ipvV~~~~~~~---~~~~---~~~v~~d~~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~ 143 (289)
T 1dbq_A 71 CSEYPE-PLLAMLEEYRHIPMVVMDWGEA---KADF---TDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAG 143 (289)
T ss_dssp CSCCCH-HHHHHHHHTTTSCEEEEECSSC---CSSS---CEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CH
T ss_pred CCCCCH-HHHHHHHHHCCCCEEEEEECCC---CCCC---CEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 655650-5789998606996899850368---8998---84997079999999999998659966999637631247899
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 4789999998639859984101754331289999999843357-645899960520789999999715300
Q T0528 171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDK-PGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
....++...++.+....... ......+.......+....... ....++...-..+...+..+.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~~~~~~l~~~g~~v 213 (289)
T 1dbq_A 144 RLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRV 213 (289)
T ss_dssp HHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 99766789998089977200-23576777778999999984599984588557899999999999869999
No 54
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=96.54 E-value=0.028 Score=30.22 Aligned_cols=199 Identities=14% Similarity=0.055 Sum_probs=101.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT 94 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~ 94 (388)
...=+||+++|-... .+-.++.+|++.+++. . |+ ++++.++..+++.-.+..+.+... ++++++ .+
T Consensus 5 ~~S~~Igvivp~~~~--~~~~~li~gi~~~~~~---~-----gy--~~~i~~s~~~~~~e~~~i~~l~~~-~vdgiIi~~ 71 (276)
T 3jy6_A 5 QSSKLIAVIVANIDD--YFSTELFKGISSILES---R-----GY--IGVLFDANADIEREKTLLRAIGSR-GFDGLILQS 71 (276)
T ss_dssp CCCCEEEEEESCTTS--HHHHHHHHHHHHHHHT---T-----TC--EEEEEECTTCHHHHHHHHHHHHTT-TCSEEEEES
T ss_pred CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 789999999299989--8999999999999998---6-----99--999995899989999999999967-998999945
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-7189389998548743223478
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVA 173 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~ 173 (388)
.... .....+.+.++|++....... . ...+ ....+..........++ .++.++++++..+..+......
T Consensus 72 ~~~~---~~~~~l~~~~iPvV~i~~~~~---~-~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~~ 141 (276)
T 3jy6_A 72 FSNP---QTVQEILHQQMPVVSVDREMD---A-CPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQE 141 (276)
T ss_dssp SCCH---HHHHHHHTTSSCEEEESCCCT---T-CSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHH
T ss_pred CCCH---HHHHHHHHCCCCEEEECCCCC---C-CCCC---EEEECHHHHHHHHCCCHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 7895---999999975998999277788---8-8988---8995469975540210112687313586168544305777
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 99999986398599841017543312899999998433576-4589996052078999999971530
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.++..... ..+.. ...+.....+.....+.+++.....+ ...+++..-..+...+..+.+.+..
T Consensus 142 r~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~g~~~~l~~~gl~ 206 (276)
T 3jy6_A 142 RYRGILAA-AQDVD-VLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHTT-CSEEE-EEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred HHHHHHHH-HHHCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 78999999-87569-7521235676788999999876421232212224489999999999985999
No 55
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.53 E-value=0.028 Score=30.18 Aligned_cols=204 Identities=12% Similarity=0.018 Sum_probs=106.3
Q ss_pred CCCCEEEEEEECCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 56835899982466770---567899999999999999855797698589999972788989999999999864885121
Q T0528 15 AADDLKIALIYGKTGPL---EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~---a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
.+.+-.||+++|..... ..+-..+..|++.+.+ +.| +++ ++.++..+++.-.+..+.+... +++++
T Consensus 5 ~~~t~~Igviip~~~~~~~~npf~~~~~~~i~~~~~---~~g-----y~~--~l~~~~~~~~~~~~~~~~l~~~-~vdgi 73 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAH---VEG-----YAL--YMSTGETEEEIFNGVVKMVQGR-QIGGI 73 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHH---HTT-----CEE--EECCCCSHHHHHHHHHHHHHTT-CCCEE
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH---HCC-----CEE--EEEECCCCHHHHHHHHHHHHCC-CCCEE
T ss_conf 887797999976776564448899999999999999---859-----999--9983899889999999998637-86657
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHH--
Q ss_conf 147751337788899986497786426776101577765348973476578889999999-71893899985487432--
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFG-- 168 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g-- 168 (388)
+-.... ........+.+.++|++....... .... +.....+....+...+.++ .++.++++++.......
T Consensus 74 Iv~~~~-~~~~~~~~l~~~~~pvV~~~~~~~---~~~~---~~~V~~d~~~~~~~a~~~L~~~g~~~i~~i~~~~~~~~~ 146 (292)
T 3k4h_A 74 ILLYSR-ENDRIIQYLHEQNFPFVLIGKPYD---RKDE---ITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVT 146 (292)
T ss_dssp EESCCB-TTCHHHHHHHHTTCCEEEESCCSS---CTTT---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHH
T ss_pred EEECCC-CCCHHHHHHHHCCCCCCCCCCCCC---CCCC---CEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 653023-431233345532532233465544---4655---112022036888887777765315406999437775066
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH---HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 234789999998639859984101754331289---99999984335764589996052078999999971530
Q T0528 169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTA---VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~---~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
..-...++..+++.+....... ....+.+... .+.++....+ .+. .++...-..+...+..+.+.+..
T Consensus 147 ~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~A~g~~~~l~~~g~~ 217 (292)
T 3k4h_A 147 RDRLAGMSDALKLADIVLPKEY-ILHFDFSRESGQQAVEELMGLQQ-PPT-AIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGG-EEECCSSHHHHHHHHHHHHTSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHCCC-CCC-EEEECCCCCCCHHHHHHHHCCCC
T ss_conf 6554554110343024665200-22333222479999999994699-997-89745852110027999980887
No 56
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.53 E-value=0.028 Score=30.18 Aligned_cols=194 Identities=10% Similarity=0.041 Sum_probs=98.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS 96 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~ 96 (388)
+=.||+++|--.. .+-..+.+|++-+.++ . |.++ .+.++..+... .+...+++... +++++ .+..
T Consensus 5 t~~Igvivp~~~~--pf~~~~l~gi~~~a~~---~-----g~~l--~v~~~~~~~~~-~~~~~~l~~~~-vdgiIi~~~~ 70 (280)
T 3gyb_A 5 TQLIAVLIDDYSN--PWFIDLIQSLSDVLTP---K-----GYRL--SVIDSLTSQAG-TDPITSALSMR-PDGIIIAQDI 70 (280)
T ss_dssp CCEEEEEESCTTS--GGGHHHHHHHHHHHGG---G-----TCEE--EEECSSSSCSS-SCHHHHHHTTC-CSEEEEESCC
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHH-HHHHHHHHHHC-CCEEEECCCC
T ss_conf 2879999188966--8999999999999998---6-----9989--99968999899-99999999719-8535512530
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF 175 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~ 175 (388)
.. ....+...|++....... .....++ ...+....+...+.++ .++.++++++..+....+.-...|
T Consensus 71 ~~------~~~~~~~~p~V~~~~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~i~~~~~~~~~~~~R~~gf 138 (280)
T 3gyb_A 71 PD------FTVPDSLPPFVIAGTRIT---QASTHDS---VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESF 138 (280)
T ss_dssp --------------CCCEEEESCCCS---SSCSTTE---EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHH
T ss_pred HH------HHHHCCCCCEEEECCCCC---CCCCCCC---CCHHHHHHHHHHCCHHHHCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 12------666414786265234468---8766553---21145543331000001102232200012320235667777
Q ss_pred HHHHHHCCCEEEEEEECCCCCCC-HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 99998639859984101754331-28999999984335764589996052078999999971530
Q T0528 176 KEALAKTGATLATEEYVPTTTTD-FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~~~~~~d-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
++++++.|.+............+ -......+....++ +. .++......+...+..+.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~~~~~~l~~~g~~ 201 (280)
T 3gyb_A 139 EATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPE-VT-AIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp HHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC-EEEECCCHHHHHHHHHHHHHHHH
T ss_conf 78999974301211233334377765566777651368-63-55312533113578998876330
No 57
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=96.50 E-value=0.03 Score=30.07 Aligned_cols=92 Identities=8% Similarity=0.011 Sum_probs=64.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 58999824667705678999999999999998557976985899999727889899999999998648851211-47751
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSS 97 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S 97 (388)
-+|++++|--.. .+-..+..|++-+.++. |.++.+...++..|+..-.+.+++++.+ ++++++ .+..+
T Consensus 2 ~~~avv~~~~~n--pf~~~i~~gi~~~a~~~--------g~~l~i~~~~~~~d~~~q~~~l~~~~~~-~vdgii~~~~~~ 70 (288)
T 1gud_A 2 AEYAVVLKTLSN--PFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPLSS 70 (288)
T ss_dssp CEEEEEESCSSS--HHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCSSS
T ss_pred CEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 359999798888--89999999999999974--------9989999678989999999999999975-998576425433
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 337788899986497786426776
Q T0528 98 AAALADLPVAEENKKILIVEPAVA 121 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~ 121 (388)
.........+.+.++|++......
T Consensus 71 ~~~~~~~~~~~~~gipvV~~d~~~ 94 (288)
T 1gud_A 71 VNLVMPVARAWKKGIYLVNLDEKI 94 (288)
T ss_dssp STTHHHHHHHHHTTCEEEEESSCC
T ss_pred CCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 211489999997199176237776
No 58
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.32 E-value=0.038 Score=29.43 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=105.6
Q ss_pred CCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 83589998246-67705678999999999999998557976985899999727889899999999998648851211477
Q T0528 17 DDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 17 ~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
.+=+||+++|- +.+ +-..+.+|++-+.++ . |+ ++++.++..+++.-.+.+++|+.+ ++++++-..
T Consensus 15 ks~tIGvivp~l~~~---~~~~l~~gi~~~~~~---~-----G~--~l~l~~s~~~~~~e~~~l~~l~~~-~vdgiii~~ 80 (289)
T 2fep_A 15 KTTTVGVIIPDISSI---FYSELARGIEDIATM---Y-----KY--NIILSNSDQNMEKELHLLNTMLGK-QVDGIVFMG 80 (289)
T ss_dssp -CCEEEEEESCTTSH---HHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred HHCEEEEECCCCCCH---HHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 349999996878898---999999999999998---6-----99--899996899989999999999866-998898537
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC--HHHH-HH
Q ss_conf 513377888999864977864267761015777653489734765788899999997-1893899985487--4322-34
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY--AFGR-DG 171 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~--~~g~-~~ 171 (388)
.... ........+.++|++....... ....++ ...+........+.++. ++.+++.++..+. .... ..
T Consensus 81 ~~~~-~~~~~~~~~~~~~vv~~~~~~~----~~~~~~---V~~D~~~~~~~~~~~l~~~G~r~i~~i~~~~~~~~~~~~~ 152 (289)
T 2fep_A 81 GNIT-DEHVAEFKRSPVPIVLAASVEE----QEETPS---VAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKK 152 (289)
T ss_dssp SCCC-HHHHHHHHHSSSCEEEESCCCT----TCCSCE---EECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTH
T ss_pred CCCC-HHHHHHHHHCCCCEEEEECCCC----CCCCCE---EEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 7688-7999999864997899612457----899988---9987899999999999973995145741675665114556
Q ss_pred HHHHHHHHHHCCCEEEEE--EECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 789999998639859984--10175433128999999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATE--EYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~--~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...++.+.++.|...... ...+....+-.....++.+..+ .+..++ +..-..+...+..+...+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~-~~~d~~a~g~~~~l~~~g~~ 220 (289)
T 2fep_A 153 LQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDK-KPTAIL-SATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSS-CCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCC-CCCEEE-ECCHHHHHHHHHHHHHCCCC
T ss_conf 678999999849997721377334320469999999995699-986799-77889999999999981999
No 59
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.27 E-value=0.04 Score=29.27 Aligned_cols=204 Identities=13% Similarity=0.010 Sum_probs=108.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
..-.||++.+.......+-.....+.+-.... .+ ..+...+...++.......+.++...-..+|+-+.
T Consensus 60 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~giii~~~- 128 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE---KG-------RQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR- 128 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH---TT-------CEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS-
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH---HC-------CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCC-
T ss_conf 87479999730455551399999999999997---18-------47873257887788999999999559887997588-
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHH-HHHHHHHCCCEEEEEECC--CHHHHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899-999997189389998548--743223478
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAIS-NAVAIGKQGVTIATLAQD--YAFGRDGVA 173 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d--~~~g~~~~~ 173 (388)
..............++|++........ ...+ ....++...+.. ...++.++.++++++... ......-..
T Consensus 129 ~~~~~~~~~~~~~~~~pvV~~~~~~~~----~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~ 201 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLRK----NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 201 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCSS----SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCC----CCCC---EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 777588999998549978993676667----7785---253238899999999999849985999978999866999999
Q ss_pred HHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 99999986398599841017--54331289999999843357645899960520789999999715300
Q T0528 174 AFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
.|...+++.|..+....... ....+-...+.++....+ .+. .+++.....+...+..+.+.+.+.
T Consensus 202 gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~a~~~~~~l~~~gl~v 268 (338)
T 3dbi_A 202 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGA-KFS-ALVASNDDMAIGAMKALHERGVAV 268 (338)
T ss_dssp HHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTC-CCS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC-CCE-EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 9999999839998831476157646779999999983488-864-999678999999999999759998
No 60
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z}
Probab=96.09 E-value=0.05 Score=28.73 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=107.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
.+.+-.||+++|-... .+-..+.+|++-+.++ . |+ ++++.++..+++.-.+..+.+. ..+++.++-.
T Consensus 5 ~~~s~~Iglivp~~~n--pf~~~l~~gi~~~a~~---~-----G~--~l~v~~~~~d~~~~~~~~~~~~-~~~vdgii~~ 71 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIAN--PFCAAVVKGIEKTAEK---N-----GY--RILLCNTESDLARSRSCLTLLS-GKMVDGVITM 71 (285)
T ss_dssp --CCCEEEEEESCTTS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHTHHHH-TTCCSEEEEC
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEC
T ss_conf 8999989999398978--8999999999999998---5-----99--8999978999899999999986-0784258511
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-189389998548--7432234
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~~ 171 (388)
........+..+ ..++|.+......+ . ...+ ....+....+...+.++. ++.++++++... ....+.-
T Consensus 72 ~~~~~~~~~~~~--~~~~p~V~~~~~~~---~-~~~~---~V~~D~~~~~~~a~~~l~~~G~r~i~~i~~~~~~~~~~~R 142 (285)
T 3c3k_A 72 DALSELPELQNI--IGAFPWVQCAEYDP---L-STVS---SVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHR 142 (285)
T ss_dssp CCGGGHHHHHHH--HTTSSEEEESSCCT---T-SSSC---EEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHH
T ss_pred CCCHHHHHHHHH--HHCCCEEEECCCCC---C-CCCC---EEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH
T ss_conf 221048999998--61599897346688---8-8998---8997749999999999997399755662574345247777
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH---HHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 78999999863985998410175433128999---999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVG---QRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|++++++.+..+........ .+..... ..+....+ .+ ..+++.....+...+..+.+.+..
T Consensus 143 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-~~-~aii~~~d~~a~~~~~~l~~~g~~ 209 (285)
T 3c3k_A 143 ESGYLNRLKFHGLDYSRISYAEN--LDYMAGKLATFSLLKSAV-KP-DAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp HHHHHHHHHHHTCCCCEEEECSS--SSHHHHHHHHHHHHSSSS-CC-SEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCC-CC-CEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 78999999985998531101220--246667899998873378-98-757854779999999999984998
No 61
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=96.05 E-value=0.052 Score=28.60 Aligned_cols=198 Identities=11% Similarity=0.044 Sum_probs=98.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
...=.||++.+++.|+ + ..+.+|++-..++ . |+.+-+...+ .+... .+.+++|+.. +++.++-..
T Consensus 10 ~~s~~Igvv~~~~~pf--~-~~l~~~i~~~a~~---~-----gy~l~v~~~~--~~~~e-~~~i~~l~~~-~vdgiIi~~ 74 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPF--H-GDLVEQIYAAATR---R-----GYDVMLSAVA--PSRAE-KVAVQALMRE-RCEAAILLG 74 (289)
T ss_dssp ---CEEEEEEETTCHH--H-HHHHHHHHHHHHH---T-----TCEEEEEEEB--TTBCH-HHHHHHHTTT-TEEEEEEET
T ss_pred CCCCEEEEEECCCCHH--H-HHHHHHHHHHHHH---C-----CCEEEEEECC--CCHHH-HHHHHHHHHC-CCCEEEEEC
T ss_conf 8999899995378769--9-9999999999998---6-----9989999489--88899-9999999970-975121102
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC-CHHHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-7189389998548-743223478
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD-YAFGRDGVA 173 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d-~~~g~~~~~ 173 (388)
.+...... .... .++|++....... ... .+ ....+....+...+.++ .++.++++++... ......-..
T Consensus 75 ~~~~~~~~-~~l~-~~iPvV~v~~~~~---~~~-~~---~V~~D~~~a~~~a~~~l~~~G~~~i~~~~~~~~~~~~~r~~ 145 (289)
T 3k9c_A 75 TRFDTDEL-GALA-DRVPALVVARASG---LPG-VG---AVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRA 145 (289)
T ss_dssp CCCCHHHH-HHHH-TTSCEEEESSCCS---STT-SE---EEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHH
T ss_pred CCHHHHHH-HHHH-CCCCEEEECCCCC---CCC-CC---CCCCCCCCCCCHHHHHEECCCCCCEEEECCCCCCCHHHHHH
T ss_conf 30158899-8754-4477586324467---555-66---44565211110012210002353112101224653125778
Q ss_pred HHHHHHHHCCCEEEEEEECCCC-CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 9999998639859984101754-33128999999984335764589996052078999999971530
Q T0528 174 AFKEALAKTGATLATEEYVPTT-TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.|.+++.+.|........+... .......+.++.+..+ .+. .++......+.-.+..+.+.+..
T Consensus 146 gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~A~g~~~~l~~~gi~ 210 (289)
T 3k9c_A 146 GFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPT-PPT-AVVAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp HHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCC-HHHCCCHHHCCCCEEECCCCCCE
T ss_conf 898888763255421223456641367889999875035-751-33214102114420000146844
No 62
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=95.93 E-value=0.059 Score=28.28 Aligned_cols=191 Identities=11% Similarity=0.028 Sum_probs=95.6
Q ss_pred CCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 83589998246-67705678999999999999998557976985899999727889899999999998648851211477
Q T0528 17 DDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 17 ~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
.+=+||+++|- +++ .+ ..+..|++-.+++ .| . ++++.+++.+. +++.+.++++++-..
T Consensus 7 ~s~~Igvv~p~~~~~--~~-~~l~~~i~~~~~~---~g-----~--~~~~~~~~~~~--------~~l~~~~vdGlIi~~ 65 (277)
T 3cs3_A 7 QTNIIGVYLADYGGS--FY-GELLEGIKKGLAL---FD-----Y--EMIVCSGKKSH--------LFIPEKMVDGAIILD 65 (277)
T ss_dssp CCCEEEEEECSSCTT--TH-HHHHHHHHHHHHT---TT-----C--EEEEEESTTTT--------TCCCTTTCSEEEEEC
T ss_pred CCCEEEEECCCCCCH--HH-HHHHHHHHHHHHH---CC-----C--EEEEECCHHHH--------HHHHHCCCCEEEEEC
T ss_conf 999899991899888--99-9999999999998---69-----9--89998185889--------999967999899954
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEEC--CCHHHHHHH
Q ss_conf 5133778889998649778642677610157776534897347657888999999-9718938999854--874322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQ--DYAFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~--d~~~g~~~~ 172 (388)
.. ........+.+.++|++....... . .. +-....+....+...+.+ ..++.++++++.. +......-.
T Consensus 66 ~~-~~~~~~~~l~~~~ipvV~~~~~~~---~-~~---~~~V~~D~~~~~~~~~~~l~~~G~~~i~~l~~~~~~~~~~~R~ 137 (277)
T 3cs3_A 66 WT-FPTKEIEKFAERGHSIVVLDRTTE---H-RN---IRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERL 137 (277)
T ss_dssp TT-SCHHHHHHHHHTTCEEEESSSCCC---S-TT---EEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHH
T ss_pred CC-CCHHHHHHHHHCCCCEEEECCCCC---C-CC---CCEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
T ss_conf 87-998999999974998999867767---7-89---9889966389999999999983995530166886554066776
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 899999986398599841017543312899999998433576458999605207899999997153
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
..|++++++.|.+.... .-.....+......++.......+. .++...-..+.-.+..+...+.
T Consensus 138 ~gf~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-ai~~~~d~~a~gv~~al~~~g~ 201 (277)
T 3cs3_A 138 AVSTRELTRFGIPYEII-QGDFTEPSGYAAAKKILSQPQTEPV-DVFAFNDEMAIGVYKYVAETNY 201 (277)
T ss_dssp HHHHHHHHHTTCCEEEE-ECCSSHHHHHHHHHHHTTSCCCSSE-EEEESSHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCCEEEE-CCCCCCCHHHHHHHHHHHCCCCCCE-EEECCCHHHHHHHHHHHHHCCC
T ss_conf 88999999859980552-1434511378999999844676534-6623785776424899997599
No 63
>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=95.90 E-value=0.061 Score=28.20 Aligned_cols=197 Identities=11% Similarity=-0.034 Sum_probs=110.0
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 35683589998246677056789999999999999985579769858999997278898999999999986488512114
Q T0528 14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG 93 (388)
Q Consensus 14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G 93 (388)
..+.+=+||+++|.-.. .+-..+.+|++-++++ .| . ++++.++..++....+..+.+..+ ++++++-
T Consensus 4 ~~~~s~~Igvv~p~~~~--~f~~~l~~gi~~~~~~---~g-----~--~l~~~~~~~d~~~~~~~~~~l~~~-~~dgiIi 70 (277)
T 3e61_A 4 YKRKSKLIGLLLPDMSN--PFFTLIARGVEDVALA---HG-----Y--QVLIGNSDNDIKKAQGYLATFVSH-NCTGMIS 70 (277)
T ss_dssp ------CEEEEESCTTS--HHHHHHHHHHHHHHHH---TT-----C--CEEEEECTTCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred CCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 88999989999398967--9999999999999998---49-----9--999997899989999999999865-9859995
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC-CCEEEEEECCCH--HHHH
Q ss_conf 7751337788899986497786426776101577765348973476578889999999718-938999854874--3223
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQ-GVTIATLAQDYA--FGRD 170 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~--~g~~ 170 (388)
.... .........+.++|++...... .. ......+..........++.++ .++++++..... ....
T Consensus 71 ~~~~--~~~~~~~l~~~~ipvv~~~~~~------~~---~~~V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~ 139 (277)
T 3e61_A 71 TAFN--ENIIENTLTDHHIPFVFIDRIN------NE---HNGISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQ 139 (277)
T ss_dssp CGGG--HHHHHHHHHHC-CCEEEGGGCC------------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHH
T ss_pred CCCC--CHHHHHHHHHCCCCEEEEECCC------CC---CCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 3642--1579999997599889972367------99---99798768999999999999779946999247666523777
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 4789999998639859984101754331289999999843357645899960520789999999715300
Q T0528 171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
-...|...+++.++........... ........+++..++ .+++..-.-+.-.+..+.+.+.+.
T Consensus 140 R~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----aIi~~~d~~A~g~~~al~~~G~~v 203 (277)
T 3e61_A 140 RVQGIKYILDQQRIDYKMLEATLLD--NDKKFIDLIKELSID----SIICSNDLLAINVLGIVQRYHFKV 203 (277)
T ss_dssp HHHHHHHHHHC---CEEEEEGGGGG--SHHHHHHHHHHHTCC----EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHHCCCCC----EEEECCHHHHHCHHHHHHHCCCCC
T ss_conf 7899999999869983044301104--799999997436975----576253265405189999739988
No 64
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=95.63 E-value=0.078 Score=27.56 Aligned_cols=196 Identities=11% Similarity=-0.039 Sum_probs=96.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
+||+++|-.. ...+ ..+.+|++-+.+ +. |+ +++..++..+++.-.+..+.++. .++++++=.... .
T Consensus 1 TIgvi~p~~~-~~f~-~~li~gi~~~a~---~~-----gy--~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~-~ 66 (276)
T 2h0a_A 1 TVSVLLPFVA-TEFY-RRLVEGIEGVLL---EQ-----RY--DLALFPILSLARLKRYLENTTLA-YLTDGLILASYD-L 66 (276)
T ss_dssp CEEEEECCSC-CHHH-HHHHHHHHHHHG---GG-----TC--EEEECCCCSCCCCC----------CCCSEEEEESCC-C
T ss_pred CEEEEECCCC-CHHH-HHHHHHHHHHHH---HC-----CC--EEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCC-C
T ss_conf 9899988888-8899-999999999999---86-----99--89999789987999999999985-699799996555-7
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHH-------HHHH
Q ss_conf 7788899986497786426776101577765348973476578889999999-7189389998548743-------2234
Q T0528 100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAF-------GRDG 171 (388)
Q Consensus 100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~-------g~~~ 171 (388)
.......+...++|++......+ ..++ ...+....+.....++ .++.+++.++...... ...-
T Consensus 67 ~~~~~~~~~~~~iP~V~~d~~~~------~~~~---V~~D~~~a~~~a~~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~R 137 (276)
T 2h0a_A 67 TERFEEGRLPTERPVVLVDAQNP------RYDS---VYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAER 137 (276)
T ss_dssp C------CCSCSSCEEEESSCCT------TSEE---EEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEECCC------CCCE---EEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 88999998744994899941468------8888---99557999999999998728962699824787501230489999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 7899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|++++++.|.++... ....+..+.......+.+.....+ ...+++.....+...+..+.+.+..
T Consensus 138 ~~g~~~a~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~g~~~al~~~g~~ 205 (276)
T 2h0a_A 138 MAGFQEALKEAGRPFSPD-RLYITRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLT 205 (276)
T ss_dssp HHHHHHHHHHTTCCCCGG-GEEEECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 999889999829976720-01111112112677777777614788599867768898799999986999
No 65
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.61 E-value=0.079 Score=27.50 Aligned_cols=200 Identities=12% Similarity=0.019 Sum_probs=106.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+-.||++.|.... .+-..+..|++.+..+ . |..+ ...+...++..-.+..+.+... ++++++-..
T Consensus 64 ~~t~~igvv~~~~~~--~~~~~~~~~i~~~~~~---~-----~~~l--~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~ 130 (348)
T 3bil_A 64 SRSNTIGVIVPSLIN--HYFAAMVTEIQSTASK---A-----GLAT--IITNSNEDATTMSGSLEFLTSH-GVDGIICVP 130 (348)
T ss_dssp ----CEEEEESCSSS--HHHHHHHHHHHHHHHH---T-----TCCE--EEEECTTCHHHHHHHHHHHHHT-TCSCEEECC
T ss_pred CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEECCCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 888879999688866--5889998899999874---3-----8545--6613775378999999998753-876599831
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEEC--CCHHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-718938999854--874322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQ--DYAFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~--d~~~g~~~~ 172 (388)
+.............++|++........ .. .......+......+....+ ..+.++++++.. +....+.-.
T Consensus 131 -~~~~~~~~~~l~~~~~p~v~~~~~~~~---~~---~~~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~R~ 203 (348)
T 3bil_A 131 -NEECANQLEDLQKQGMPVVLVDRELPG---DS---TIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERL 203 (348)
T ss_dssp -CGGGHHHHHHHHHC-CCEEEESSCCSC---C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHH
T ss_pred -CCCHHHHHHHHHHCCCCEEEECCCCCC---CC---CCCEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf -551077899998437986852244577---77---75132012125788999998753872699990897645799999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 8999999863985998410175433128999999984335764589996052078999999971530
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
..|.+++++.+..............+......++....+ . .+++.....+...+..+.+.+..
T Consensus 204 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p---~-ai~~~~d~~A~~~~~~l~~~gl~ 266 (348)
T 3bil_A 204 EDFKAACANSKIGEQLVFLGGYEQSVGFEGATKLLDQGA---K-TLFAGDSMMTIGVIEACHKAGLV 266 (348)
T ss_dssp HHHHHHHHHTTCCCCEEECCCSSHHHHHHHHHHHHHTTC---S-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---C-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 999999985378870687168876899999999985799---7-89981648899999999986999
No 66
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.54 E-value=0.084 Score=27.35 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=102.2
Q ss_pred CCCEEEEEEECCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 68358999824667705--6789999999999999985579769858999997278898999999999986488512114
Q T0528 16 ADDLKIALIYGKTGPLE--AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG 93 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a--~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G 93 (388)
.++.|||++++ +|+.. .+.+....|++.+.++. |.+++. .+.. ++....+.+++++.+ +..+|++
T Consensus 2 ~~~~kva~v~d-~G~i~D~~fn~~~~~G~~~~~~~~--------gi~~~~--~e~~-~~~d~~~~~~~~a~~-g~dlIi~ 68 (318)
T 2fqx_A 2 GGDFVVGMVTD-SGDIDDKSFNQQVWEGISRFAQEN--------NAKCKY--VTAS-TDAEYVPSLSAFADE-NMGLVVA 68 (318)
T ss_dssp -CCCEEEEEES-SSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEE--EECC-SGGGHHHHHHHHHHT-TCSEEEE
T ss_pred CCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHH--------CCEEEE--EECC-CHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 98758999987-889998878999999999999986--------985999--9559-989999999999977-9998999
Q ss_pred CCCCHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHH----HHHHHHHHC-CCEEEEEECC-CH
Q ss_conf 77513377888999864-97786426776101577765348973476578889----999999718-9389998548-74
Q T0528 94 TSSSAAALADLPVAEEN-KKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAI----SNAVAIGKQ-GVTIATLAQD-YA 166 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~-~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~v~~i~~d-~~ 166 (388)
+.. ....++..++.+. ++.++....... ..+++........+.+. +.+...+.+ .++++++... .+
T Consensus 69 ~g~-~~~~~~~~vA~~~Pd~~F~~~d~~~~------~~~Nv~~~~~~~~e~~ylaG~~Aa~~tk~~~~~~vG~vgg~~~p 141 (318)
T 2fqx_A 69 CGS-FLVEAVIETSARFPKQKFLVIDAVVQ------DRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELG 141 (318)
T ss_dssp EST-TTHHHHHHHHHHCTTSCEEEESSCCC------SCTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCST
T ss_pred ECC-CCCCHHHHHHHHCCCCEEEEEECCCC------CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
T ss_conf 076-53468899999889997999817768------88877666403556667999999987513785079950675650
Q ss_pred HHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHH-HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC
Q ss_conf 32234789999998639--85998410175433128-9999999843357645899960520789999999715300362
Q T0528 167 FGRDGVAAFKEALAKTG--ATLATEEYVPTTTTDFT-AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI 243 (388)
Q Consensus 167 ~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~~d~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
.-......|..-++..+ .++.....-...+++.. .....+...++| +++........-.+.++++.+....+.
T Consensus 142 ~~~~~~~gF~~G~~~~np~~~v~~~~~g~~~d~~~~~~~a~~l~~~GaD----VI~~~ag~~~~gv~~aa~e~~~~~~~~ 217 (318)
T 2fqx_A 142 MMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVN----VIFQVAGGTGNGVIKEARDRRLNGQDV 217 (318)
T ss_dssp TTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCC----EEEEECGGGHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC----EEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 3788999999999974998439999658758848999999998736999----999878987734999999976246980
Q ss_pred CCCCC
Q ss_conf 11235
Q T0528 244 ELSTG 248 (388)
Q Consensus 244 ~~~~~ 248 (388)
...+.
T Consensus 218 ~~IGv 222 (318)
T 2fqx_A 218 WVIGV 222 (318)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 89998
No 67
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.24 E-value=0.11 Score=26.75 Aligned_cols=207 Identities=12% Similarity=0.030 Sum_probs=104.9
Q ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 10035683589998246677056789999999999999985579769858999997278898999999999986488512
Q T0528 11 TAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI 90 (388)
Q Consensus 11 ~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~ 90 (388)
.+...+.+-.||+++|-... .+-..+.+|++...++ . |..+ ++.++..++..- ..+.+++.+.++++
T Consensus 8 r~L~~~~s~~Igvi~p~~~~--~f~~~l~~gi~~~a~~---~-----gy~~--~~~~~~~~~~~~-~~~~~~l~~~~vdg 74 (303)
T 3kke_A 8 RALRHSRSGTIGLIVPDVNN--AVFADMFSGVQMAASG---H-----STDV--LLGQIDAPPRGT-QQLSRLVSEGRVDG 74 (303)
T ss_dssp ---------CEEEEESCTTS--TTHHHHHHHHHHHHHH---T-----TCCE--EEEECCSTTHHH-HHHHHHHHSCSSSE
T ss_pred HHHHHCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHHH-HHHHHHHHHCCCCE
T ss_conf 99874899989999598987--7999999999999997---6-----9989--999689997999-99999999589788
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCH--H
Q ss_conf 1147751337788899986497786426776101577765348973476578889999999-718938999854874--3
Q T0528 91 AIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYA--F 167 (388)
Q Consensus 91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~--~ 167 (388)
++-........ ........++|++......+ ...+ ....++...+...+.++ .++.++++++..+.. .
T Consensus 75 iIi~~~~~~~~-~~~~~~~~~iPvV~~d~~~~-----~~~~---~V~~d~~~~~~~~~~~L~~~G~~~i~~l~~~~~~~~ 145 (303)
T 3kke_A 75 VLLQRREDFDD-DMLAAVLEGVPAVTINSRVP-----GRVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDT 145 (303)
T ss_dssp EEECCCTTCCH-HHHHHHHTTSCEEEESCCCT-----TCCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHH
T ss_pred EEECCCCCCHH-HHHHHHHCCCCEEEECCCCC-----CCCC---EEEECHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
T ss_conf 98324568759-99999975998898168788-----8788---799635999999999999828772774268877745
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHH----CCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 22347899999986398599841017--5433128999999984----3357645899960520789999999715300
Q T0528 168 GRDGVAAFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDA----LKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 168 g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
.+.-...|.+.+++.|.++....... ....+......++... .++.+. .++...-....-.+..+.+.+...
T Consensus 146 ~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-av~~~~d~~a~g~~~~l~~~G~~i 223 (303)
T 3kke_A 146 AQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPT-AVVVASVNAAVGALSTALRLGLRV 223 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999981997541332045667578999999999877752467986-899667688999999999839865
No 68
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.04 E-value=0.12 Score=26.39 Aligned_cols=204 Identities=12% Similarity=0.039 Sum_probs=107.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+-.||+++|..+. .+-.....+++.+.+. . |. .+...+...++.......+.+... +++.++-..
T Consensus 56 ~~~~~Igvi~~~~~~--~~~~~~~~~~~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~ 122 (340)
T 1qpz_A 56 NHTKSIGLLATSSEA--AYFAEIIEAVEKNCFQ---K-----GY--TLILGNAWNNLEKQRAYLSMMAQK-RVDGLLVMC 122 (340)
T ss_dssp TCCSEEEEEESCSCS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCCEEEEEECCCCC--CCHHHHHHHHHHHHHH---C-----CC--EEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 888579999546667--4018999999999874---8-----95--899941554448999999999854-887489814
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH-HHHHHHHHHCCCEEEEEECCC--HHHHHHH
Q ss_conf 5133778889998649778642677610157776534897347657888-999999971893899985487--4322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA-ISNAVAIGKQGVTIATLAQDY--AFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~--~~g~~~~ 172 (388)
.........-.....++|++........ .. .......+..... .+...+..++.+++++|.... .....-.
T Consensus 123 ~~~~~~~~~~~~~~~~ip~v~i~~~~~~---~~---~~~~~~~d~~~~~~~~~~~L~~~G~~~i~~l~~~~~~~~~~~r~ 196 (340)
T 1qpz_A 123 SEYPEPLLAMLEEYRHIPMVVMDWGEAK---AD---FTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRL 196 (340)
T ss_dssp SCCCHHHHHHHHTTTTSCEEEEEESSCC---CS---SSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCC---CC---CCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 6787277888876148877983367666---77---77445334688899999999975998599982885553178999
Q ss_pred HHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 8999999863985998410175--4331289999999843357645899960520789999999715300
Q T0528 173 AAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
..|...+++.+..+........ ........+.++....++ +. .+++.....+...+..+.+.+...
T Consensus 197 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~A~~~~~~l~~~g~~i 264 (340)
T 1qpz_A 197 AGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHR-PT-AVFCGGDIMAMGALCAADEMGLRV 264 (340)
T ss_dssp HHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSC-CS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCC-CE-EEEECCHHHHHHCCHHHHHCCCCC
T ss_conf 889999998599998221895434266799999999817999-80-899777099874022698739978
No 69
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.00 E-value=0.12 Score=26.33 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=105.0
Q ss_pred CCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 035683589998246-6770567899999999999999855797698589999972788989999999999864885121
Q T0528 13 VHAADDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 13 ~~a~~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
+-.+.+-.||+++|- +. .+-..+.+|++-++++ . |+.+ ++...+..++..-....+.+... +++.+
T Consensus 5 L~~~ks~~Igvi~p~~~~---~f~~~l~~gi~~~~~~---~-----gy~~-~l~~~~~~~~~~~~~~i~~l~~~-~vdgi 71 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNN---RFYAQIIDGIQEVIQK---E-----GYTA-LISFSTNSDVKKYQNAIINFENN-NVDGI 71 (277)
T ss_dssp ---CCCCEEEEEESCTTS---HHHHHHHHHHHHHHHH---T-----TCEE-EEEECSSCCHHHHHHHHHHHHHT-TCSEE
T ss_pred CCCCCCCEEEEEECCCCC---HHHHHHHHHHHHHHHH---C-----CCEE-EEEECCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 015878889999299878---8999999999999998---4-----9989-99958999999999999999867-96389
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCH--HHH
Q ss_conf 147751337788899986497786426776101577765348973476578889999999718938999854874--322
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGVTIATLAQDYA--FGR 169 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--~g~ 169 (388)
+-..... +.....++|++....... ... +.....+..........++.+++++++++..+.. ..+
T Consensus 72 i~~~~~~------~~~~~~~iPvV~~~~~~~---~~~----~~~V~~d~~~a~~~a~~~l~~~~~~i~~~~~~~~~~~~~ 138 (277)
T 3hs3_A 72 ITSAFTI------PPNFHLNTPLVMYDSANI---NDD----IVRIVSNNTKGGKESIKLLSKKIEKVLIQHWPLSLPTIR 138 (277)
T ss_dssp EEECCCC------CTTCCCSSCEEEESCCCC---CSS----SEEEEECHHHHHHHHHHTSCTTCCEEEEEESCTTSHHHH
T ss_pred EECCCCC------CHHHHCCCCEEEECCCCC---CCC----CCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 9434322------047765998899725578---899----768996569999888777644872699982662100467
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 3478999999863985998410175433128999999984335764589996052078999999971530
Q T0528 170 DGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 170 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.....+.......+......... .... .....++....++ +. .++...-..+...+..+.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~-~~-ai~~~~d~~A~~~~~al~~~g~~ 203 (277)
T 3hs3_A 139 ERIEAMTAEASKLKIDYLLEETP--ENNP-YISAQSALNKSNQ-FD-AIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC--SSCH-HHHHHHHHHTGGG-CS-EEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCEEEEECC--CCCH-HHHHHHHHHCCCC-CC-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 77678998864347530132035--5448-9999999854789-98-89964858888798999974987
No 70
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=93.26 E-value=0.29 Score=24.16 Aligned_cols=202 Identities=9% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+-.||+++|... ..+-.++..|++-+.++ . |. ++++.+...++....+....++.+ +++.++-..
T Consensus 6 ~rs~~Igvi~~~~~--~~f~~~l~~gi~~~~~~---~-----G~--~~~l~~~~~~~~~~~~~i~~~~~~-~vd~ii~~~ 72 (291)
T 3egc_A 6 KRSNVVGLIVSDIE--NVFFAEVASGVESEARH---K-----GY--SVLLANTAEDIVREREAVGQFFER-RVDGLILAP 72 (291)
T ss_dssp -CCCEEEEEESCTT--SHHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCCEEEEEECCCC--CHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 99898999949998--88999999999999998---6-----99--899996899979999999999975-986899857
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-71893899985487--4322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~g~~~~ 172 (388)
+.. ...........++|++....... . +.......+........+.++ .++.++++++..+. .....-.
T Consensus 73 ~~~-~~~~~~~~~~~~~p~v~~~~~~~---~----~~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~R~ 144 (291)
T 3egc_A 73 SEG-EHDYLRTELPKTFPIVAVNRELR---I----PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERL 144 (291)
T ss_dssp CSS-CCHHHHHSSCTTSCEEEESSCCC---C----TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHH
T ss_pred CCC-CHHHHHHHHHCCCCEEEECCCCC---C----CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 656-78999997531896899413346---8----999889855799999999999977995699952764330588999
Q ss_pred HHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 89999998639859984101--754331289999999843357645899960520789999999715300
Q T0528 173 AAFKEALAKTGATLATEEYV--PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~--~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
..|.+.+++.|......... +...........++....+ .+.. +++..-..+.-.+..+.+.+.+.
T Consensus 145 ~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~a-i~~~~D~~A~g~~~al~~~g~~i 212 (291)
T 3egc_A 145 KGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGAD-RPTA-LLTSSHRITEGAMQALNVLGLRY 212 (291)
T ss_dssp HHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-C-CCSE-EEESSHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCC-CCCE-EEECCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999869996541142477530689999999985578-8642-33157899999999999859988
No 71
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.01 E-value=0.31 Score=23.93 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=106.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
..-.||++.|.... .+-..+..+++-..+ +. |+.+. ......++.......+.+.......+++.+..
T Consensus 69 ~~~~I~~i~p~~~~--~~~~~~~~~~~~~~~---~~-----g~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 136 (355)
T 3e3m_A 69 RSGFVGLLLPSLNN--LHFAQTAQSLTDVLE---QG-----GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp --CEEEEEESCSBC--HHHHHHHHHHHHHHH---HT-----TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEEECCCCC--CHHHHHHHHHHHHHH---CC-----CCEEE--EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 78779999577654--212343210022343---06-----85034--30245641356689999986266642223465
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCC---HHHHHHH
Q ss_conf 133778889998649778642677610157776534897347657888999999-971893899985487---4322347
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQDY---AFGRDGV 172 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~---~~g~~~~ 172 (388)
.. ..........++|++....... . .. ......+....+...+.+ +.++.++++++.... .....-.
T Consensus 137 ~~--~~~~~~~~~~~~p~v~i~~~~~---~-~~---~~~V~~d~~~~~~~a~~~L~~~G~r~i~~l~~~~~~~~~~~~R~ 207 (355)
T 3e3m_A 137 HT--EQTIRLLQRASIPIVEIWEKPA---H-PI---GHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARR 207 (355)
T ss_dssp CC--HHHHHHHHHCCSCEEEESSCCS---S-CS---SEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHH
T ss_pred CC--HHHHHHHHHCCCCEEEEECCCC---C-CC---CCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 55--8999999962798488623567---8-98---98898777999999999999769964999737876653178998
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 8999999863985998410175433128---9999999843357645899960520789999999715300
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
..|+..++..|.+............+.. ..........+. +. .+++.....+...+..+.+.+...
T Consensus 208 ~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-ai~~~~d~~a~g~~~al~~~gl~i 276 (355)
T 3e3m_A 208 AGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPD-TD-CIFCVSDMPAFGLLSRLKSIGVAV 276 (355)
T ss_dssp HHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CC-EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 6169999985999535440244542202488876555403899-84-899778399999999999859999
No 72
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.57 E-value=0.47 Score=22.86 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=103.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
.....|+++.|..... +-.....+++-+. ... |+ .+.......++..-......+.......+|+-+.
T Consensus 66 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~----~~~----~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~Ii~~~ 133 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNM--VFPEVLTGINQVL----EDT----EL--QPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp SCCSEEEEEESCSSSS--SHHHHHHHHHHHH----TSS----SS--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEEEECCCCCCC--CCHHHHHHHHHHH----HHH----HC--CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8760677623544453--2023331333422----100----00--1110112354212589999999538851454310
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHH---HHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-7189389998548743---2234
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAF---GRDG 171 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~---g~~~ 171 (388)
. ............++|++....... ... .-....+....+...+.++ ..+.++++++...... ...-
T Consensus 134 ~--~~~~~~~~l~~~~ip~v~i~~~~~----~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~R 204 (344)
T 3kjx_A 134 E--HSEAARAMLDAAGIPVVEIMDSDG----KPV---DAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKR 204 (344)
T ss_dssp C--CCHHHHHHHHHCSSCEEEEEECSS----CCS---SEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHH
T ss_pred C--CCHHHHHHHHCCCCCEEEEEECCC----CCC---CCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 2--310134443116886278840246----888---8777531899999999999983998641006666556216778
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC--CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 789999998639859984101754--33128999999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|++++++.|.++.....+..+ ..+-......+....+. + ..+++....-+...+..+...+..
T Consensus 205 ~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~ai~~~~d~~A~~~~~~l~~~gl~ 272 (344)
T 3kjx_A 205 FEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPD-L-DFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTT-C-CEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-C-EEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 8888989997298632110001132212331102232025654-1-245326721567899999986998
No 73
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=91.08 E-value=0.53 Score=22.56 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=87.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
..-+||+++|..............-++...+..+ ...+.+.......+.+. ....+++...+++.++-...
T Consensus 67 ~s~~Igvv~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dgiIi~~~ 137 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-------DTQLTLIPASPASSVDH--VSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-------SCEEEEEECCCCTTCCH--HHHHHHHHTCCCSCEEEESC
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCEEEEECCCCCHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9985999976654333221267889999999986-------35855875213320478--99999886414565421133
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCH---------
Q ss_conf 1337788899986497786426776101577765348973476578889999999-718938999854874---------
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYA--------- 166 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~--------- 166 (388)
. ............++|++....... ....++ ...+........+.++ ..+.++++++.....
T Consensus 138 ~-~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~---v~~D~~~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~~~~ 209 (366)
T 3h5t_A 138 A-KGDPHIDAIRARGLPAVIADQPAR----EEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVT 209 (366)
T ss_dssp C-TTCHHHHHHHHHTCCEEEESSCCS----CTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECC
T ss_pred C-CCCHHHHHHHHCCCCCCCCCCCCC----CCCCCC---CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH
T ss_conf 3-220356666512787423454334----677774---45516777788888999739975999970455566643035
Q ss_pred ----------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf ----------322347899999986398599841017543312---8999999984335764589996052078999999
Q T0528 167 ----------FGRDGVAAFKEALAKTGATLATEEYVPTTTTDF---TAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKL 233 (388)
Q Consensus 167 ----------~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~---~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (388)
....-...+.+.+.+.|.+............+. ...+.++....++ +. .+++..-..+.-.+..+
T Consensus 210 ~~~~~~~~~~~~~~R~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-ai~~~nD~~A~g~~~al 287 (366)
T 3h5t_A 210 RERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPD-LT-AVLCTVDALAFGVLEYL 287 (366)
T ss_dssp HHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC-EEEECCHHHHHHHHHHH
T ss_conf 66541102445566667899998861356554322356765477799999987640478-83-78607889999889999
Q ss_pred HHHCCH
Q ss_conf 971530
Q T0528 234 QDMDPK 239 (388)
Q Consensus 234 ~~~~~~ 239 (388)
.+.+.+
T Consensus 288 ~~~Gl~ 293 (366)
T 3h5t_A 288 KSVGKS 293 (366)
T ss_dssp HHTTCC
T ss_pred HHCCCC
T ss_conf 983999
No 74
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=89.65 E-value=0.7 Score=21.82 Aligned_cols=202 Identities=10% Similarity=-0.026 Sum_probs=95.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC--CC
Q ss_conf 5683589998246677056789999999999999985579769858999997278898999999999986488512--11
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI--AI 92 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~--i~ 92 (388)
......||++.|.... .+-..+..+++...++ . |..+.+...+ ..+.+...+..+.|... +++. ++
T Consensus 58 ~~~s~~Igvv~~~~~~--~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~-~~~~e~~~~~~~~l~~~-~vdg~ii~ 125 (349)
T 1jye_A 58 GKQSLLIGVATSSLAL--HAPSQIVAAILSRADQ---L-----GASVVVSMVE-RSGVEACKTAVHNLLAQ-RVSGLIIN 125 (349)
T ss_dssp ----CEEEEEESCTTS--HHHHHHHHHHHHHHHH---T-----TCEEEEEECC-SSSHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred CCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHH---C-----CCCEEEECCC-CCCHHHHHHHHHHHHHC-CCCCCCCC
T ss_conf 1776289999447766--2267887766666765---0-----7702441234-32279999999999963-77763013
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECC--CHHHH
Q ss_conf 4775133778889998649778642677610157776534897347657888999999-97189389998548--74322
Q T0528 93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQD--YAFGR 169 (388)
Q Consensus 93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d--~~~g~ 169 (388)
++..+.. ...........+.+...... .. .+.....+....+...+.+ ..++.++++++... ....+
T Consensus 126 ~~~~~~~--~~~~~~~~~~~~~~v~~~~~-----~~---~~~~v~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~ 195 (349)
T 1jye_A 126 YPLDDQD--AIAVEAACTNVPALFLDVSD-----QT---PINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSAR 195 (349)
T ss_dssp SCCCHHH--HHHHHHHTTTSCEEESSSCT-----TS---SSCEEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHH
T ss_pred CCCCCHH--HHHHHHHCCCCCEEEEECCC-----CC---CCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 6643025--67999850589668851467-----88---88746631888999999999975996699994774322899
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 34789999998639859984101754331289999999843357645899960520789999999715300
Q T0528 170 DGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 170 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
.-...|..++++.+..............+......++....++ +. .+++.....+...+..+.+.+...
T Consensus 196 ~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-ai~~~~d~~A~g~~~~l~~~g~~v 264 (349)
T 1jye_A 196 LRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIV-PT-AMLVANDQMALGAMRAITESGLRV 264 (349)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHHHTTCC-CS-EEEESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CC-EEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999975998643434775177799999999735999-83-687488899999999999808978
No 75
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=88.97 E-value=0.79 Score=21.52 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=53.8
Q ss_pred CCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 568358999824667-70567899999999999999855797698589999972788989-9999999998648851211
Q T0528 15 AADDLKIALIYGKTG-PLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPD-LSKAALAEAYQDDGADIAI 92 (388)
Q Consensus 15 a~~~IkIG~~~p~sG-~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~-~a~~~~~~li~~~~v~~i~ 92 (388)
...+|+||++.-.+- -..++ .++..+.+.|--. .+++|++.+.|++.-.. ........|..-|++.+--
T Consensus 5 ~~~~v~IalVGKY~~~l~DaY-~Si~eAL~ha~~~--------~~~~v~i~wi~se~le~~~~~~~~~~L~~~dGilvpg 75 (273)
T 2w7t_A 5 SNPTVRIAFVGKYLQDAGDTY-FSVLQCFEHCQIA--------LQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPG 75 (273)
T ss_dssp ---CEEEEEEECCHHHHTTTT-HHHHHHHHHHHHH--------HTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECC
T ss_pred CCCCEEEEEEECCCCCCCHHH-HHHHHHHHHHHHH--------HCCCEEEEEEEHHHCCCCCHHHHHHHHCCCCCEEECC
T ss_conf 999669999968159994289-8799999974787--------0983689998744514767778998743677457378
Q ss_pred CCCC--CHHHHHHHHHHHHCCCEEEECC
Q ss_conf 4775--1337788899986497786426
Q T0528 93 GTSS--SAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 93 G~~~--S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
|... ..-.+.++.++.++++|++...
T Consensus 76 GFG~RG~eGkI~Ai~yARenniPfLGIC 103 (273)
T 2w7t_A 76 GFGNRGVDGKCAAAQVARMNNIPYFGVX 103 (273)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTCCEEEET
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 4787870689999999997388603444
No 76
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=88.62 E-value=0.83 Score=21.38 Aligned_cols=95 Identities=17% Similarity=0.090 Sum_probs=59.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC--------CHHHHHHHHHHHHHCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788--------9899999999998648
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS--------KPDLSKAALAEAYQDD 86 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~--------~~~~a~~~~~~li~~~ 86 (388)
...+++||++.-.++-..+| .++..+.+-|-- -.+.+|++.+.|++- ++.........|-.-+
T Consensus 22 ~~k~v~IaiVGKY~~l~DaY-~Sv~eAL~ha~~--------~~~~~v~i~widse~le~~~~~~~~~~~~~~~~~L~~~d 92 (289)
T 2v4u_A 22 SMKICSIALVGKYTKLRDCY-ASVFKALEHSAL--------AINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKAD 92 (289)
T ss_dssp -CEEEEEEEEESCSSCCGGG-HHHHHHHHHHHH--------HTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCS
T ss_pred CCCEEEEEEEECCCCCCHHH-HHHHHHHHHHHH--------HCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 78768999995678995689-969999998417--------619737899998700124433345300567998741388
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHCCCEEEECC
Q ss_conf 8512114775--1337788899986497786426
Q T0528 87 GADIAIGTSS--SAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 87 ~v~~i~G~~~--S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
++.+.-|... ..-.+.++.++.+.++|++...
T Consensus 93 GIlVPGGFG~RGieGkI~Ai~yARen~IPfLGIC 126 (289)
T 2v4u_A 93 GILVPGGFGIRGTLGKLQAISWARTKKIPFLGVX 126 (289)
T ss_dssp EEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEET
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3883577887774379999999997583077888
No 77
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=87.55 E-value=0.97 Score=20.97 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=103.9
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
......||++.|.... .+......+++.+... . |. .+.......+.....+..+.+... ++++++-.
T Consensus 60 ~~~s~~i~~~~~~~~~--~~~~~~~~~~~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dgii~~ 126 (332)
T 2o20_A 60 SKRTTTVGVILPTITS--TYFAAITRGVDDIASM---Y-----KY--NMILANSDNDVEKEEKVLETFLSK-QVDGIVYM 126 (332)
T ss_dssp --CCCEEEEEESCTTC--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred CCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHH---C-----CC--EEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 0887257663034455--3012211256777763---5-----83--688722678778899999999844-97667501
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEEC--CCHHHHHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-718938999854--87432234
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQ--DYAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~--d~~~g~~~ 171 (388)
..+. ...........++|++....... ....+ ....+....+...+.++ ..+.+++++|.. +......-
T Consensus 127 ~~~~-~~~~~~~~~~~~~pvv~~~~~~~----~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R 198 (332)
T 2o20_A 127 GSSL-DEKIRTSLKNSRTPVVLVGTIDG----DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTER 198 (332)
T ss_dssp SSCC-CHHHHHHHHHHCCCEEEESCCCT----TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHH
T ss_pred CCCC-CHHHHHHHHCCCCCEEEEECCCC----CCCCC---EEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
T ss_conf 1123-07888876414897899603446----78898---8985589999999999997299875333178777039999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCC-CCCCH-HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 78999999863985998410175-43312-8999999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPT-TTTDF-TAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~-~~~d~-~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|+..+++.|.++.....+.. ...+. ......+... .+.. +++.....+...+..+.+.+..
T Consensus 199 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~-i~~~~d~~A~g~~~~l~~~g~~ 264 (332)
T 2o20_A 199 MVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER---GATS-AVVSHDTVAVGLLSAMMDKGVK 264 (332)
T ss_dssp HHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT---TCCE-EEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH---CCCE-EEECCCHHHHHHHHHHHHCCCC
T ss_conf 9999999998599999546996562166899999999762---3540-4541437666645899971898
No 78
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=85.25 E-value=1.3 Score=20.24 Aligned_cols=201 Identities=11% Similarity=0.042 Sum_probs=101.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+-.||++.|.... .+-..+..|++.+++. . |. .+.+.+...+.+........++......+++-+.
T Consensus 60 ~~~~~Igv~~~~~~~--~~~~~~~~~i~~~~~~---~-----g~--~l~~~~~~~~~~~~~~~~~~~~~~~~~giii~~~ 127 (339)
T 3h5o_A 60 AKSRTVLVLIPSLAN--TVFLETLTGIETVLDA---A-----GY--QMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp ---CEEEEEESCSTT--CTTHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 776189999544321--3699999999999997---4-----99--7999850354167888899998557642799840
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC-HHHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-71893899985487-43223478
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY-AFGRDGVA 173 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~-~~g~~~~~ 173 (388)
.+.. .........+.|.+...... . . ..-....+....+...+.++ .++.++++++..+. ........
T Consensus 128 ~~~~--~~~~~~~~~~~~~v~~~~~~----~-~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~l~~~~~~~~~~~~~ 197 (339)
T 3h5o_A 128 SHAE--PFERILSQHALPVVYMMDLA----D-D---GRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLD 197 (339)
T ss_dssp CCCT--THHHHHHHTTCCEEEEESCC----S-S---SCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHH
T ss_pred CCCC--HHHHHHHHCCCCCCCCCCCC----C-C---CCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
T ss_conf 3320--13444420133320012444----5-5---33034205989999999999975997087864026654220002
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCC---HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 9999998639859984101754331---289999999843357645899960520789999999715300
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTD---FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d---~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
.++.++++.+..............+ ....+.++....++ +. .+++.....+.-.+..+.+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~g~~~al~~~G~~v 265 (339)
T 3h5o_A 198 GYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPD-CD-ALFCCNDDLAIGALARSQQLGIAV 265 (339)
T ss_dssp HHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCC-CC-EEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 567777630455431000024623677899999999954999-83-899726456665434687639988
No 79
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=83.89 E-value=1.5 Score=19.88 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=100.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
......||++.|.... .+......+++.++... | . ++.......+..........++.. ++++++-.
T Consensus 57 ~~~s~~ig~~~~~~~~--~~~~~~~~~~~~~~~~~---g-----~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dgiii~ 123 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISN--IFYAELARGIEDIATMY---K-----Y--NIILSNSDQNQDKELHLLNNMLGK-QVDGIIFM 123 (332)
T ss_dssp TC-CCEEEEEEC--CC--SHHHHHHHHHHHHHHHH---T-----C--EEEEEECCSHHHHHHHHHHHTSCC-SSCCEEEC
T ss_pred HCCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHC---C-----C--EEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 1787089999335666--48889999999999860---7-----6--466213443016899999999863-86389954
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCH---HHHH
Q ss_conf 7513377888999864977864267761015777653489734765788899999997-18938999854874---3223
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYA---FGRD 170 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~---~g~~ 170 (388)
.+. ............+.|.+....... ....++ ...+....+...+.++. ++.++++++..... ....
T Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~---v~~d~~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~~ 195 (332)
T 2hsg_A 124 SGN-VTEEHVEELKKSPVPVVLAASIES----TNQIPS---VTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAK 195 (332)
T ss_dssp CSS-CCHHHHHHHTTSSSCEEEESCCCS----CTTSCE---EEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTT
T ss_pred CCC-CCHHHHHHHHHCCCCEEEECCCCC----CCCCCE---EEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 777-887899999853897488514568----788876---861579999999999997399625999637654304568
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 478999999863985998410175--433128999999984335764589996052078999999971530
Q T0528 171 GVAAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 171 ~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
-...|++++++.|..+......+. ...+......++....+ .+. .+++..-..+.-.+..+...+..
T Consensus 196 r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-ai~~~~d~~a~g~~~~l~~~g~~ 264 (332)
T 2hsg_A 196 KVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDE-KPT-AIFVGTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC-CCE-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 9999999999769998853588478877889999999983799-980-89967859999999999983998
No 80
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=83.61 E-value=1.5 Score=19.81 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=93.7
Q ss_pred EEEEEECCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999824667705--67899999999999999855797698589999972788989999999999864885121147751
Q T0528 20 KIALIYGKTGPLE--AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 20 kIG~~~p~sG~~a--~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
.||+++| |+.. .+.+....|++.+.++ -| +++.+.+...+.....+.+++++++ +.++|+++. .
T Consensus 7 vVa~l~~--G~i~D~sfn~~~~~G~~~~~~~----~g------i~~~~~e~~~~~~~~~~~i~~~~~~-G~dlIi~~g-~ 72 (296)
T 2hqb_A 7 MVGLLVE--DTIDDQGWNRKAYEGLLNIHSN----LD------VDVVLEEGVNSEQKAHRRIKELVDG-GVNLIFGHG-H 72 (296)
T ss_dssp EEEEECC--CC----CCTHHHHHHHHHHHHH----SC------CEEEEECCCCSHHHHHHHHHHHHHT-TCCEEEECS-T
T ss_pred EEEEEEC--CCCCCCHHHHHHHHHHHHHHHH----HC------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC-C
T ss_conf 9999977--8998603899999999999998----69------8699995799889999999999977-999999837-4
Q ss_pred HHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHH-HHHH-HHHHCCCEEEEEECCCHHHHHHHHH
Q ss_conf 3377888999864-97786426776101577765348973476578889-9999-9971893899985487432234789
Q T0528 98 AAALADLPVAEEN-KKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAI-SNAV-AIGKQGVTIATLAQDYAFGRDGVAA 174 (388)
Q Consensus 98 ~~~~~~~~~~~~~-~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~v~~i~~d~~~g~~~~~~ 174 (388)
....++..++.+. ++.++..... ... +++........+... +... .+..+-.++++|..-. .......
T Consensus 73 ~~~~~~~~~A~~yPd~~F~~~d~~---~~~----~Nv~~~~~~~~e~~ylaG~~Aa~~tkt~kvG~vgg~~--~~~~~~g 143 (296)
T 2hqb_A 73 AFAEYFSTIHNQYPDVHFVSFNGE---VKG----ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFP--WQPEVEG 143 (296)
T ss_dssp HHHHHHHTTTTSCTTSEEEEESCC---CCS----SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCT--TCHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEECCC---CCC----CCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEECCCC--CCHHHHH
T ss_conf 101699999987899879993376---456----7700243031120059999999857788403882413--7188999
Q ss_pred HHHHHHHCCCEEEEEEEC-CCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 999998639859984101-754331289-9999998433576458999605207899999997153
Q T0528 175 FKEALAKTGATLATEEYV-PTTTTDFTA-VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~-~~~~~d~~~-~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
|..-++..+-..+...+. .+.+++... ..+.+...++| +++........-.+.++++.+.
T Consensus 144 f~~Gak~~n~~~~~v~~~g~~~D~~~~~~~a~~li~~gaD----vI~~~a~~~~~gv~~aa~~~g~ 205 (296)
T 2hqb_A 144 FVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVD----VFYPAGDGYHVPVVEAIKDQGD 205 (296)
T ss_dssp HHHHHHHTTCCEEEEEECSSSSCHHHHHHHHHHHHTTTCC----EEECCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998875277615999758856717789999999976998----9986479866699999997198
No 81
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=67.10 E-value=4.3 Score=17.07 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 5433128999999984
Q T0528 194 TTTTDFTAVGQRLFDA 209 (388)
Q Consensus 194 ~~~~d~~~~~~~i~~~ 209 (388)
++-..+...+.+++..
T Consensus 282 ~~l~~W~~~~~~~~~~ 297 (550)
T 1vco_A 282 PNLSFWQEAVRVLKHP 297 (550)
T ss_dssp CCCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHCC
T ss_conf 8758999999998586
No 82
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=66.94 E-value=4.4 Score=17.06 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=97.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528 16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
..+-.||++.|.- ...+-.++..|++-++++ . |+.+ ++.....+..........+... .+..++...
T Consensus 58 ~~~~~i~~~~~~~--~~~~~~~~~~gi~~~~~~---~-----g~~l--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNI--SNPFFNQMASVIEEYAKN---K-----GYTL--FLCNTDDDKEKEKTYLEVLQSH-RVAGIIASR 124 (330)
T ss_dssp --CCEEEEEESCT--TSHHHHHHHHHHHHHHHH---T-----TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEET
T ss_pred CCCCEEEEECCCC--CCCHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 7883799963766--771466777799999997---7-----9989--9961578878889999987425-346885024
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HHHHHHH
Q ss_conf 51337788899986497786426776101577765348973476578889999999-71893899985487--4322347
Q T0528 96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AFGRDGV 172 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~g~~~~ 172 (388)
... .......++|++...... ....+ ....+....+...+.++ .++.++++++.... .....-.
T Consensus 125 ~~~-----~~~~~~~~~~vv~~~~~~-----~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~ 191 (330)
T 3ctp_A 125 SQC-----EDEYANIDIPVVAFENHI-----LDNII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRY 191 (330)
T ss_dssp CCC-----SGGGTTCCSCEEEESSCC-----CTTSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHH
T ss_pred CCC-----HHHCCCCCCCEEEECCCC-----CCCCC---EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf 430-----232024687189934767-----77665---46237899999999999986997799993666661899999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 8999999863985998410175433-1289999999843357645899960520789999999715300
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTT-DFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~-d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
..|.+++++.|.++........... ........+++. + .+. .+++.........+..+...+...
T Consensus 192 ~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~-ai~~~~d~~a~g~~~~l~~~g~~v 257 (330)
T 3ctp_A 192 KGFLDGARAKDLEIDFIEFQHDFQVKMLEEDINSMKDI-V-NYD-GIFVFNDIAAATVMRALKKRGVSI 257 (330)
T ss_dssp HHHHHHHHHTTCCCEEEECSSSCCGGGGGCCCTTGGGG-G-GSS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C-CCC-CCEECCHHHHHHHHHHHHHCCCCC
T ss_conf 99999998545554200012300466778877888744-6-998-402237899999999999829998
No 83
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus}
Probab=63.62 E-value=5.1 Score=16.67 Aligned_cols=67 Identities=12% Similarity=-0.054 Sum_probs=26.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHH
Q ss_conf 938999854874322347899999986398599841017543312899999998433576458999605207
Q T0528 155 GVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGG 226 (388)
Q Consensus 155 ~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 226 (388)
.++++++.+-+-. ..-...+...++...-++.....+=..+.+-...+..+ +...+.+++.......
T Consensus 156 ~~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~dTIC~AT~~RQ~a~~~l----a~~vD~miVVGg~nSS 222 (297)
T 3dnf_A 156 HERVGIVAQTTQN-EEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKL----APEVDVMIIIGGKNSG 222 (297)
T ss_dssp CSEEEEEECTTCC-HHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHH----GGGSSEEEEESCTTCH
T ss_pred CCCCEEEEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----HHHCCEEEEECCCCCC
T ss_conf 6752699885217-99999999999987415577786017789899999999----9867999996888994
No 84
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=61.91 E-value=5.4 Score=16.48 Aligned_cols=47 Identities=6% Similarity=-0.111 Sum_probs=36.3
Q ss_pred HHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 9999997-1893899985487432234789999998639859984101754
Q T0528 146 SNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT 195 (388)
Q Consensus 146 ~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~ 195 (388)
+....++ .+.||++++.+ |.......+++.+++.|++|+....+...
T Consensus 98 A~~~AL~~lg~krI~l~TP---Y~~~~~~~~~~~~~~~G~eVv~~~~l~~~ 145 (223)
T 2dgd_A 98 SVYELLKKLNVRKLWIGTP---YIKERTLEEVEWWRNKGFEIVGYDGLGKI 145 (223)
T ss_dssp HHHHHHHHTTCCEEEEEES---SCHHHHHHHHHHHHTTTCEEEEEEECCCC
T ss_pred HHHHHHHHCCCCCEEEECC---CCHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 9999999829997288557---77065799999999679058530024756
No 85
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=57.29 E-value=6.5 Score=16.00 Aligned_cols=122 Identities=15% Similarity=0.033 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 78898999999999986---488512114775133778889998649778642677610157776534897347657888
Q T0528 68 DQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA 144 (388)
Q Consensus 68 ~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
.+.||..-......|.+ ..+++.|+|+..++...+ ..++...++|++..--. .......................
T Consensus 31 ~~~dP~l~~~i~~~la~~~~~~~~d~Ivg~~~~GiplA-~~~A~~L~~p~~~~Rk~-~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
T 1y0b_A 31 HQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPA-VMTGLKLGVPVVFARKH-KSLTLTDNLLTASVYSFTKQTES 108 (197)
T ss_dssp SEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHH-HHHHHHHTCCEEEEBSS-CCSSCCSSEEEEEEEETTTTEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHHHCCCEEEEEEC-CCCCCCCCEEEEEEEEECCCCHH
T ss_conf 54589999999999999850789979997174035999-99999706457999851-67789885799999852044401
Q ss_pred -HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf -999999971893899985487432234789999998639859984101
Q T0528 145 -ISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 145 -~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
..........+++|.+|-+=-..|.++.. ..+.+++.|.+++....+
T Consensus 109 ~~~~~~~~l~~g~rVlIVDDvi~TG~T~~~-ai~ll~~~Ga~vv~v~vl 156 (197)
T 1y0b_A 109 QIAVSGTHLSDQDHVLIIDDFLANGQAAHG-LVSIVKQAGASIAGIGIV 156 (197)
T ss_dssp EEEEEGGGCCTTCEEEEEEEEESSCHHHHH-HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEE
T ss_conf 100234542479469980787634245999-999999889989999999
No 86
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.62 E-value=7.3 Score=15.70 Aligned_cols=43 Identities=7% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 9999998648851211477513377888999864977864267
Q T0528 77 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 77 ~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
..-+......++.+|+||.+|+=+..+..++...+...|+..|
T Consensus 31 ~~~~~~~~k~klI~I~GpTasGKT~lAi~LA~~~~~eIIsaDS 73 (339)
T 3a8t_A 31 SLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp -------CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 7443545788679998988538999999999987997995240
No 87
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=50.32 E-value=8.5 Score=15.32 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=6.8
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 43312899999998
Q T0528 195 TTTDFTAVGQRLFD 208 (388)
Q Consensus 195 ~~~d~~~~~~~i~~ 208 (388)
+-..+...+.+++.
T Consensus 272 ~l~~W~~~~~~~~~ 285 (545)
T 1s1m_A 272 NLSEWEQVIFEEAN 285 (545)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHC
T ss_conf 66777766688748
No 88
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=49.80 E-value=8.7 Score=15.27 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=30.9
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 864885121147751337788899986497786426
Q T0528 83 YQDDGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 83 i~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
+....+.+++||.+|+-...+..+++..+.++|+.+
T Consensus 6 ~~k~~iI~i~G~pGSGKsT~a~~La~~~g~~~is~g 41 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 777858999899999879999999998598468634
No 89
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=43.67 E-value=11 Score=14.69 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=23.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
Q ss_conf 3589998246677056789999999999999985579769858999997278
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQ 69 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~ 69 (388)
++|++...|-+ ... ..+++-..+++++..+ | +|++.++..+
T Consensus 35 ~lr~a~~~p~~---~~~----~~~~~~fa~~V~e~T~---G-~v~i~~~~~g 75 (361)
T 2zzv_A 35 RWRIQTAWDAG---TVG----YSLFQKFTERVKELTD---G-QLEVQPFPAG 75 (361)
T ss_dssp EEEEEESSCTT---SHH----HHHHHHHHHHHHHHTT---T-SEEEEEECTT
T ss_pred EEEEECCCCCC---CHH----HHHHHHHHHHHHHHCC---C-EEEEEEECCC
T ss_conf 99996578998---767----8999999999999769---9-1899993798
No 90
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=43.38 E-value=11 Score=14.66 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=27.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 358999824667705678999999999999998557976985-8999997278898999999999986488512
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGR-KIVVITKDDQSKPDLSKAALAEAYQDDGADI 90 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr-~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~ 90 (388)
++|++...|-+.+ ..+ .+++...+.+++..+ || +|++.....-+.+. +.++++ .+..+++
T Consensus 33 tlr~a~~~p~~~~--~~~----~~~~~fae~V~e~T~---G~i~i~~~~~g~Lg~~~---e~~~~v-~~G~vd~ 93 (365)
T 2hzl_A 33 TWRLASSFPKSLD--TIF----GGAEVLSKMLSEATD---GNFQIQVFSAGELVPGL---QAADAV-TEGTVEC 93 (365)
T ss_dssp EEEEEESSCTTCT--TTT----HHHHHHHHHHHHHTT---TSSEEEEECTTTSSCGG---GHHHHH-HTTSSSE
T ss_pred EEEEECCCCCCCC--HHH----HHHHHHHHHHHHHCC---CEEEEEEECCCCCCCCH---HHHHHH-HCCCCCE
T ss_conf 9999706899886--277----999999999999749---91999996286546406---689999-7798743
No 91
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3}
Probab=42.58 E-value=4.2 Score=17.13 Aligned_cols=89 Identities=18% Similarity=0.025 Sum_probs=43.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC----C------HHHH-HHHHHHHHHC
Q ss_conf 835899982466770567899999999999999855797698589999972788----9------8999-9999999864
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS----K------PDLS-KAALAEAYQD 85 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~----~------~~~a-~~~~~~li~~ 85 (388)
..-+||++...|=.-+.+-++ =.++..+. ..|..+.....-|+. + +... ...+++| ++
T Consensus 5 ~~~~igli~~~~~~~~~~~~~---~~~~~~~~-------~p~v~~~~~~ipd~p~~i~~~~~~~~~~~~l~~~~~~l-e~ 73 (228)
T 2eq5_A 5 DKYTIGLIRVITLEDKEILNL---HGRIIESA-------FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEF-ER 73 (228)
T ss_dssp -CEEEEEEESSCCCCHHHHTH---HHHHHHHH-------CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCEEEEEEEECCCCHHHHHH---HHHHHHHH-------CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HH
T ss_conf 113677898421485889999---99998751-------89974676159999854578121123068999999999-86
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 885121147751337788899986497786426
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
.++++|+-+++|... +...-+..++|++...
T Consensus 74 ~g~Daivi~C~t~~~--~~~~re~~~iPVvgi~ 104 (228)
T 2eq5_A 74 EGVDAIIISCAADPA--VEKVRKLLSIPVIGAG 104 (228)
T ss_dssp TTCSEEEECSTTCTT--HHHHHHHCSSCEEEHH
T ss_pred CCCCEEEEECCCHHH--HHHHHHHCCCCEECCH
T ss_conf 799899991487899--9999986699987527
No 92
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=40.73 E-value=12 Score=14.42 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 5121147751337788899986497786426
Q T0528 88 ADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
+.+++||.+|+-...+..+++..+.++|+.+
T Consensus 2 iI~i~GppGsGKsT~a~~La~~~g~~~i~~g 32 (206)
T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 8999899999879999999998799367589
No 93
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.37 E-value=13 Score=14.29 Aligned_cols=193 Identities=9% Similarity=0.037 Sum_probs=99.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
......||++.|.... .+-..+..|++-+..+. |..+ .+.+. .++..-......|+.. +++.++-.
T Consensus 61 ~~~~~~i~~~~~~~~~--~~~~~~~~gi~~~~~~~--------~~~~--~~~~~-~~~~~~~~~~~~l~~~-~vdGiI~~ 126 (333)
T 3jvd_A 61 EHRSALVGVIVPDLSN--EYYSESLQTIQQDLKAA--------GYQM--LVAEA-NSVQAQDVVMESLISI-QAAGIIHV 126 (333)
T ss_dssp ---CCEEEEEESCSSS--HHHHHHHHHHHHHHHHH--------TCEE--EEEEC-CSHHHHHHHHHHHHHH-TCSEEEEC
T ss_pred CCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHHC--------CCCC--CCCCC-CCHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf 0776299999457765--17989998999999974--------9863--24666-7417799999997651-33565356
Q ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHH
Q ss_conf 751337788899986497786426776101577765348973476578889999999-7189389998548--7432234
Q T0528 95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~ 171 (388)
... ......++|++....... . ...++ ...+....+.....++ ..+.++++++... ......-
T Consensus 127 ~~~-------~~~~~~~iP~V~v~~~~~---~-~~~~~---V~~d~~~~~~~~~~~l~~~G~r~i~~~~g~~~~~~~~~r 192 (333)
T 3jvd_A 127 PVV-------GSIAPEGIPMVQLTRGEL---G-PGFPR---VLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQER 192 (333)
T ss_dssp CCT-------TCCC-CCSCEEEECC--------CCSCE---EEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHH
T ss_pred CHH-------HHHHHCCCCEEEECCCCC---C-CCCCE---EEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 424-------446660998899767767---8-99988---995531778999999985488369995154310357888
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 78999999863985998410175433128999999984335764589996052078999999971530
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
...|.+++++.|....... .....+....+.+.....+ .+.. +++.....+...+..+.+.+..
T Consensus 193 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~-~~~a-i~~~~d~~A~g~~~~l~~~g~~ 256 (333)
T 3jvd_A 193 MRGISHAASIYGAEVTFHF--GHYSVESGEEMAQVVFNNG-LPDA-LIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHTTCEEEEEE--CCSSHHHHHHHHHHHHHTC-CCSE-EEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHHHHCC-CCCE-EEECCHHHHHHHHHHHHHCCCC
T ss_conf 9999999986398621542--4542120589999997079-9871-4444879999999999984999
No 94
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=35.96 E-value=14 Score=13.96 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 9999985579769858999997278898999999999986---4885121147751337788899986497786426776
Q T0528 45 GLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVA 121 (388)
Q Consensus 45 a~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~ 121 (388)
-.+++.+..-.++|.=| -..|--+||.......+.|.+ +.++++|+|+..++...+ ..++...++|++..--.
T Consensus 87 l~~~l~~~~r~l~G~~v--y~~~il~dP~~l~~ig~~lA~~~~~~~iD~Ivgve~~GiplA-~~vA~~L~~P~v~~rk~- 162 (291)
T 1o57_A 87 LGQSLANPERILPGGYV--YLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLA-YAAASYLNVPVVIVRKD- 162 (291)
T ss_dssp HHHHHTCGGGEETTTEE--CCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHH-HHHHHHHTCCEEEEBCC-
T ss_pred HHHHHCCCCCCCCCCEE--EHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH-HHHHHHHCCCEEEEEEC-
T ss_conf 99995699952688558--745540599999999999999707789979992375678999-99999858985999951-
Q ss_pred CCCCCCCCCCEEEEE--CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 101577765348973--47657888999999971893899985487432234789999998639859984101
Q T0528 122 DQITGEKWNRYIFRT--GRNSSQDAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
....... .+.... ..................+++|.+|-+--..|.. .....+.+++.|.+++....+
T Consensus 163 ~k~~~g~--~~~~~~~s~~~~~~~~~~~~~~~l~~g~rVLIVDDvi~tG~T-~~~~i~ll~e~GA~vvgv~vi 232 (291)
T 1o57_A 163 NKVTEGS--TVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGT-INGMINLLDEFNANVAGIGVL 232 (291)
T ss_dssp -----CC--EEEEEEECSSCCSEEEEEEEGGGSCTTCEEEEEEEEESSSHH-HHHHHHHTGGGTCEEEEEEEE
T ss_pred CCCCCCC--EEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEEEHHCCHH-HHHHHHHHHHCCCEEEEEEEE
T ss_conf 5778996--399977614576531465202210469789999972302867-999999999879979999999
No 95
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=35.19 E-value=15 Score=13.89 Aligned_cols=16 Identities=0% Similarity=-0.168 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999855
Q T0528 37 QTETGLMMGLEYATKG 52 (388)
Q Consensus 37 ~~~~g~~la~~~iN~~ 52 (388)
...++++++.+.+...
T Consensus 24 GV~rAi~~a~~~~~~~ 39 (326)
T 3ke8_A 24 GVDRAISIVENALAIY 39 (326)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 3999999999999870
No 96
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.37 E-value=15 Score=13.81 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=27.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+|+||.+|+-...+..+++..++++|+.+.
T Consensus 3 I~i~GpPGsGK~T~a~~la~~~g~~~is~Gd 33 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTGD 33 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999987993785899
No 97
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=33.77 E-value=14 Score=13.95 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 851211477513377888999864977864267
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
--.+|+||.+|+-...+..+++..++++|+.+.
T Consensus 28 ~riiilGpPGSGK~Tqa~~La~~~g~~hIs~Gd 60 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 449998999998799999999987988874899
No 98
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.34 E-value=15 Score=13.89 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 885121147751337788899986497786426
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
.+..+++||.+|+-...+..+++..+.++|+.+
T Consensus 4 ~k~Ivl~G~PGSGKsT~a~~La~~~~~~~is~g 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 888999889999879999999998599077489
No 99
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=33.22 E-value=16 Score=13.69 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 8851211477513377888999864977864267
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.++.+|+||.+|+=+..+..++...+...|+..|
T Consensus 3 ~kiI~I~GpTasGKT~la~~LA~~~~~eIIsaDS 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEH
T ss_conf 7679998987216999999999987996996202
No 100
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=30.90 E-value=17 Score=13.46 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+|+||.+|+-...+..+++..++++|+.+.
T Consensus 7 I~i~GpPGsGK~T~a~~La~~~g~~~is~Gd 37 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGD 37 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999986994675999
No 101
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=30.62 E-value=18 Score=13.43 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+++||.+|+-...+..+++..++++|+.+.
T Consensus 10 Iii~GpPGSGK~Tqa~~La~~~~~~~is~Gd 40 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLSSGD 40 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999997997885999
No 102
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=30.57 E-value=18 Score=13.42 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=31.0
Q ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 7189389998548743223478999999863985998410175
Q T0528 152 GKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT 194 (388)
Q Consensus 152 ~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~ 194 (388)
..+.+|++++.+ |.......+++.+++.|++|+.......
T Consensus 114 alg~~rI~v~TP---Y~~~~~~~~~~~~~~~G~ev~~~~~lg~ 153 (240)
T 3ixl_A 114 ALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGI 153 (240)
T ss_dssp HTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred HHCCCEEEEEEC---CHHHHHHHHHHHHHHCCCEECCEEECCC
T ss_conf 829974899708---8689879999999987973303110278
No 103
>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=29.99 E-value=18 Score=13.36 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 999999864885121147751337788899986497786426776
Q T0528 77 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVA 121 (388)
Q Consensus 77 ~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~ 121 (388)
..+..+-..++..+++|.............+++.++|++......
T Consensus 27 ~~~~li~~AkrPviivG~g~~~~~~e~~~~~~~~~ipv~~T~~~~ 71 (174)
T 1ytl_A 27 PVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAI 71 (174)
T ss_dssp HHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEETTHH
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 999999977995899697531659999999986399889713424
No 104
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=29.12 E-value=19 Score=13.27 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 5683589998246677056789999999999999985579769858999997278898999999999986488512-114
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIG 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G 93 (388)
...+||||+.. |+++.. +...++ +.+.+. |.+|+++..++...+..|+. ...+++ +++
T Consensus 21 ~~~~l~iG~~~---~~~~~~---~~~~~~---~~~~k~-----Gi~Ve~v~F~d~~~~n~AL~-------~G~ID~n~~q 79 (275)
T 3gxa_A 21 AKKEIVFGTTV---GDFGDM---VKEQIQ---PELEKK-----GYTVKLVEFTDYVRPNLALA-------EGELDINVFQ 79 (275)
T ss_dssp --CEEEEEEET---THHHHH---HHHTHH---HHHHTT-----TCEEEEEEESSSSHHHHHHH-------HTSCSEEEEE
T ss_pred CCCEEEEEEEC---CCHHHH---HHHHHH---HHHHHC-----CCEEEEEEECCCHHHHHHHH-------CCCCCEECCC
T ss_conf 88539998506---976999---999989---999964-----98799999588347889986-------6996544157
Q ss_pred C
Q ss_conf 7
Q T0528 94 T 94 (388)
Q Consensus 94 ~ 94 (388)
+
T Consensus 80 ~ 80 (275)
T 3gxa_A 80 H 80 (275)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 105
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.60 E-value=19 Score=13.22 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=26.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 121147751337788899986497786426
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
.+|+||.+|+-...+..+++..++++|+.+
T Consensus 3 I~i~GpPGSGK~T~a~~La~~~~~~~is~G 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 999899999879999999999799788699
No 106
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=28.13 E-value=19 Score=13.17 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+++||.+|+-...+..+++..++++|+.+.
T Consensus 19 iii~GpPGSGK~T~a~~La~~~g~~hIs~gd 49 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGD 49 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEHHH
T ss_conf 9998999998699999999986984762899
No 107
>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=28.01 E-value=19 Score=13.16 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+|+||.+|+-...+..+++..++++|+.+.
T Consensus 11 I~i~GpPGSGK~T~a~~La~~~~~~~is~Gd 41 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQISTGD 41 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999987995774999
No 108
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=27.50 E-value=20 Score=13.10 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=26.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1211477513377888999864977864267
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+|+||.+|+-......+++..++++|+.+.
T Consensus 3 I~i~G~PGSGK~T~a~~La~~~g~~~is~gd 33 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGD 33 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999987982860999
No 109
>1di6_A MOGA, molybdenum cofactor biosythetic enzyme; MOCO, MOCO biosynthesis, gephyrin, unknown function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.49 E-value=20 Score=13.10 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=40.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999-99727889899999999998648851211477
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVV-ITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 95 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~l-v~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~ 95 (388)
+.+|+|++.-- .-...|+..-.......+.+++.|.. ...++. ++-| |+..-....+++.++.++++|+...
T Consensus 2 ~~~rvavitvs--D~~~~G~~~D~sgp~l~~~L~~~G~~--~~~v~~~iVpD---d~~~I~~~l~~~~~~~~~dlIittG 74 (195)
T 1di6_A 2 ATLRIGLVSIS--DRASSGVYQDKGIPALEEWLTSALTT--PFELETRLIPD---EQAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp CCEEEEEEEEE--CC-------CCHHHHHHHHHHHHBCS--CEEEEEEEEES---CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCEEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHCCCC--CEEEEEEEECC---CHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 83089999958--87647975677399999999974997--64877789788---7899999999975046841898357
No 110
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=26.59 E-value=21 Score=13.00 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH-
Q ss_conf 78898999999999986--488512114775133778889998649778642677610157776534897347657888-
Q T0528 68 DQSKPDLSKAALAEAYQ--DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA- 144 (388)
Q Consensus 68 ~~~~~~~a~~~~~~li~--~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (388)
--+||+.....++.|.. ...+++|+|+-.++... +..++...+.|++...-....... . .+.....+.....
T Consensus 31 ll~dpe~~~~~~~~la~~~~~~~D~Vvgi~~~Gi~l-A~~lA~~lg~p~v~~r~~~~~~~~-~---~~~~~~~~~~~~~~ 105 (175)
T 1vch_A 31 FLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPL-THVLAEALGLPYVVARRRRRPYME-D---PIIQEVQTLTLGVG 105 (175)
T ss_dssp CTTCHHHHHHHHHHHGGGSCTTCCEEEEESSTHHHH-HHHHHHHHTCCEEEEBSSCCTTCC-S---CEEEECCC------
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH-HHHHHHHHCCCEEEEEECCCCCCC-C---CEEEEEECCCCCCC
T ss_conf 615999999999999987587988999727766206-899999969995999721367789-8---53621570211455
Q ss_pred ----HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf ----999999971893899985487432234789999998639859984101
Q T0528 145 ----ISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 145 ----~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
..........++++.++-+=-..|. ......+.+++.|.+++....+
T Consensus 106 ~~~~~~~~~~~~~~G~rVllVDDv~~TG~-Tl~a~~~ll~~~Ga~vv~~~~i 156 (175)
T 1vch_A 106 EVLWLDRRFAEKLLNQRVVLVSDVVASGE-TMRAMEKMVLRAGGHVVARLAV 156 (175)
T ss_dssp CEEEECHHHHHHHTTCEEEEEEEEESSSH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEECCHHHHCCCCEEEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEEE
T ss_conf 20465211112138988999860786795-0999999999879979999999
No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=26.32 E-value=21 Score=12.97 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 885121147751337788899986497786426
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
-.+.+|+||.+|+-...+..+++..+.++|+.+
T Consensus 15 ~~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCH
T ss_conf 818999899999879999999998599145344
No 112
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.95 E-value=21 Score=12.93 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=29.6
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 64885121147751337788899986497786426
Q T0528 84 QDDGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 84 ~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
...++.+++||.+|+=+..+..+++..+.++|+.+
T Consensus 10 ~k~kiI~l~G~pGSGKsT~a~~La~~~g~~~i~~~ 44 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 16858999899999989999999998499067168
No 113
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.48 E-value=23 Score=12.76 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 85121147751337788899986497786426
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
.+.+|+||.+|+-+..+..+++..+.++++.+
T Consensus 7 ~iI~i~G~pGsGKsTia~~Lae~~~~~~is~g 38 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 48999899999889999999999699457644
No 114
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=22.16 E-value=25 Score=12.49 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 8851211477513377888999864977864267
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
..+.+|+||.+|+=+..+..++...+...|+..|
T Consensus 7 ~~ii~I~GpTasGKT~LA~~LA~~~~~eIIsaDS 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
T ss_conf 9669998977135999999999987997994125
No 115
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=21.83 E-value=26 Score=12.45 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 389998548743223478999999863985998410175433128999999984335
Q T0528 156 VTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 156 ~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
++|+ |..| ..|..+...+.+.+++.|.+|+....+.....||.....++......
T Consensus 2 kkI~-igsD-haG~~lK~~l~~~L~~~g~ev~D~G~~~~~~~DYpd~a~~va~~v~~ 56 (149)
T 2vvr_A 2 KKIA-FGCD-HVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG 56 (149)
T ss_dssp CEEE-EEEC-TTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred CEEE-EEEC-CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 8799-9758-70799999999999987998997799866677851889999988733
No 116
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.74 E-value=26 Score=12.44 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 85121147751337788899986497786426
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
-+.+|+||.+|+-...+..+++..+.++++.+
T Consensus 4 ~~I~i~G~pGSGKsT~a~~La~~~g~~~is~g 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHH
T ss_conf 09999899999989999999998699576089
No 117
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31
Probab=21.10 E-value=26 Score=12.36 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=35.6
Q ss_pred CCCEEEEEECCCHHHHHH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH
Q ss_conf 893899985487432234-7899999986398599841017543312899999998433576458999605207899999
Q T0528 154 QGVTIATLAQDYAFGRDG-VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTK 232 (388)
Q Consensus 154 ~~~~v~~i~~d~~~g~~~-~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~ 232 (388)
+.++|.+|+--.....+. ...+.+.+.+.|.++........+..+....++.+.+........+++.....++...+..
T Consensus 3 g~~~VlivHG~~gs~~~~w~~~la~~L~~~G~~v~~~d~p~~~~~~~~~~~~~l~~~~~~~~~~~~lvGhS~Gg~~~~~~ 82 (192)
T 1uxo_A 3 GTKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRF 82 (192)
T ss_dssp -CCEEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTSCCHHHHHHHHHTTGGGCCTTEEEEEETTHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 88989997999979514479999999996899799974237786788999999999988618974999817279999999
Q ss_pred HH
Q ss_conf 99
Q T0528 233 LQ 234 (388)
Q Consensus 233 ~~ 234 (388)
+.
T Consensus 83 ~~ 84 (192)
T 1uxo_A 83 LE 84 (192)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 118
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.65 E-value=27 Score=12.30 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=13.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 5121147751337788899986497786426
Q T0528 88 ADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
+.+|+||..|+=+..+..++...+...|+..
T Consensus 7 vi~I~GpTasGKs~la~~lA~~~~~eIIsaD 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 7999897720799999999998799799502
No 119
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=20.31 E-value=27 Score=12.25 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=29.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 835899982466770567899999999999999855797698589999972788989999999999864885121
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i 91 (388)
.+||||+.. +... +. +...+.+.+. |.+|+++..++...+..|+ ....+++-
T Consensus 39 k~i~iG~~~----~~~~----~~---~~v~~~~kk~-----Gi~Ve~~~F~d~~~~n~AL-------~~G~ID~n 90 (295)
T 1p99_A 39 KKVTIGVAS----NDTK----AW---EKVKELAKKD-----DIDVEIKHFSDYNLPNKAL-------NDGDIDMN 90 (295)
T ss_dssp -CEEEEESS----SCCH----HH---HHHHHHHGGG-----TCCEEEEECSSTTSHHHHH-------HTTSSSEE
T ss_pred CEEEEEECC----CCHH----HH---HHHHHHHHHC-----CCEEEEEEECCCHHHHHHH-------HCCCCCEE
T ss_conf 639999679----8589----99---9999999974-----9879999837826789998-------75997757
Done!