Query         T0528 NP_949733.1, Rhodopseudomonas palustris CGA009, 388 residues
Match_columns 388
No_of_seqs    164 out of 4989
Neff          10.5
Searched_HMMs 22458
Date          Fri May 21 18:06:22 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0528.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0528.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3i09_A Periplasmic branched-ch 100.0       0       0  400.9  40.2  363   16-387     2-369 (375)
  2 3i45_A Twin-arginine transloca 100.0       0       0  391.3  40.0  367   15-386     2-380 (387)
  3 1pea_A Amidase operon; gene re 100.0       0       0  377.7  38.5  354   15-377     4-366 (385)
  4 3hut_A Putative branched-chain 100.0       0       0  355.3  40.3  345   16-370     2-349 (358)
  5 3h5l_A Putative branched-chain 100.0       0       0  352.2  34.4  356   12-373     8-399 (419)
  6 3lkb_A Probable branched-chain 100.0       0       0  333.0  38.4  341   14-362     3-364 (392)
  7 1usg_A Leucine-specific bindin 100.0       0       0  330.6  37.4  340   17-364     1-342 (346)
  8 3lop_A Substrate binding perip 100.0       0       0  325.2  34.8  344   15-365     2-355 (364)
  9 3eaf_A ABC transporter, substr 100.0       0       0  298.1  31.5  339   16-364     2-363 (391)
 10 1jdp_A NPR-C, atrial natriuret 100.0 3.9E-42       0  269.4  35.1  342   13-362     4-382 (441)
 11 1dp4_A Atrial natriuretic pept 100.0 7.7E-40 3.4E-44  255.7  32.0  335   18-360     2-383 (435)
 12 3h6g_A Glutamate receptor, ion 100.0 1.7E-38 7.7E-43  247.6  34.1  338   16-363     2-368 (395)
 13 3ks9_A Mglur1, metabotropic gl 100.0   7E-36 3.1E-40  231.9  36.4  341   17-362    16-461 (496)
 14 2e4z_A Metabotropic glutamate  100.0 1.3E-35 5.9E-40  230.3  28.4  344   16-360    14-452 (501)
 15 2wjw_A Glutamate receptor 2; t 100.0 6.9E-35 3.1E-39  225.9  30.4  324   17-363     1-359 (388)
 16 3kg2_A Glutamate receptor 2; I 100.0 6.7E-35   3E-39  226.0  29.9  324   17-363     1-359 (823)
 17 2h4a_A YRAM (HI1655); perplasm 100.0   1E-35 4.5E-40  230.9  20.4  308   20-362     2-313 (325)
 18 2e4u_A Metabotropic glutamate  100.0 1.1E-32 4.7E-37  212.8  35.7  343   17-362    13-451 (555)
 19 3jpw_A Glutamate [NMDA] recept  99.9 1.5E-25 6.6E-30  169.9  17.3  308   18-362     3-340 (363)
 20 2qh8_A Uncharacterized protein  99.2 7.1E-09 3.2E-13   69.8  18.8  170   13-191     3-177 (302)
 21 2vk2_A YTFQ, ABC transporter p  99.1 4.7E-07 2.1E-11   58.9  24.2  207   18-240     2-217 (306)
 22 8abp_A L-arabinose-binding pro  98.7 1.1E-05   5E-10   50.6  24.8  210   17-241     1-224 (306)
 23 3ksm_A ABC-type sugar transpor  98.7 1.3E-05 5.9E-10   50.2  21.0  201   20-238     2-211 (276)
 24 2fvy_A D-galactose-binding per  98.6 1.7E-05 7.8E-10   49.5  23.6  207   18-237     2-226 (309)
 25 2rjo_A Twin-arginine transloca  98.6   2E-05   9E-10   49.1  22.5  207   16-238     3-221 (332)
 26 2h3h_A Sugar ABC transporter,   98.5   4E-05 1.8E-09   47.3  24.3  199   19-238     2-206 (313)
 27 3lft_A Uncharacterized protein  98.5 5.4E-05 2.4E-09   46.5  21.6  207   18-241     2-213 (295)
 28 1jx6_A LUXP protein; protein-l  98.3 0.00013   6E-09   44.1  24.4  189   15-212    40-234 (342)
 29 2ioy_A Periplasmic sugar-bindi  98.3 0.00014 6.1E-09   44.1  22.6  198   20-237     3-206 (283)
 30 3l49_A ABC sugar (ribose) tran  98.2 0.00028 1.2E-08   42.2  21.6  201   16-237     3-214 (291)
 31 3brs_A Periplasmic binding pro  98.2 0.00029 1.3E-08   42.2  20.5  203   17-237     4-213 (289)
 32 3brq_A HTH-type transcriptiona  98.1 0.00029 1.3E-08   42.1  19.0  203   16-239    17-225 (296)
 33 3gbv_A Putative LACI-family tr  98.1 0.00036 1.6E-08   41.6  25.0  187   12-212     2-200 (304)
 34 2dri_A D-ribose-binding protei  98.1 0.00042 1.9E-08   41.2  22.8  197   20-237     3-205 (271)
 35 2iks_A DNA-binding transcripti  98.0  0.0007 3.1E-08   39.8  17.5  201   16-239    18-222 (293)
 36 3l6u_A ABC-type sugar transpor  97.9 0.00091   4E-08   39.2  22.5  204   14-238     4-219 (293)
 37 3h75_A Periplasmic sugar-bindi  97.8  0.0012 5.2E-08   38.5  24.4  208   19-239     4-230 (350)
 38 3gv0_A Transcriptional regulat  97.7  0.0015 6.9E-08   37.8  18.7  205   15-239     5-213 (288)
 39 3hcw_A Maltose operon transcri  97.7  0.0018 8.2E-08   37.3  21.5  207   15-239     4-217 (295)
 40 3d02_A Putative LACI-type tran  97.7  0.0022 9.6E-08   36.9  25.2  199   19-238     5-213 (303)
 41 3g1w_A Sugar ABC transporter;   97.6  0.0025 1.1E-07   36.5  24.1  195   23-237     9-210 (305)
 42 2fn9_A Ribose ABC transporter,  97.6  0.0027 1.2E-07   36.3  23.1  198   20-237     4-214 (290)
 43 3miz_A Putative transcriptiona  97.2  0.0075 3.3E-07   33.7  15.7  211    7-239     2-222 (301)
 44 3g85_A Transcriptional regulat  97.2  0.0082 3.7E-07   33.4  13.7  206   11-239     4-213 (289)
 45 3d8u_A PURR transcriptional re  97.2  0.0087 3.9E-07   33.3  20.8  201   17-239     2-206 (275)
 46 1byk_A Protein (trehalose oper  97.1    0.01 4.5E-07   32.9  14.9  189   20-238     4-196 (255)
 47 3clk_A Transcription regulator  97.1    0.01 4.5E-07   32.9  14.9  202   15-239     5-210 (290)
 48 3huu_A Transcription regulator  97.0   0.013 5.6E-07   32.3  17.4  203   15-239    19-227 (305)
 49 1tjy_A Sugar transport protein  97.0   0.013 5.9E-07   32.1  22.5  178   17-212     2-189 (316)
 50 2qu7_A Putative transcriptiona  96.9   0.015 6.5E-07   31.9  17.1  199   15-239     5-212 (288)
 51 3bbl_A Regulatory protein of L  96.9   0.016 7.2E-07   31.7  16.3  202   18-239     4-213 (287)
 52 2rgy_A Transcriptional regulat  96.7   0.021 9.5E-07   30.9  17.8  200   15-239     5-214 (290)
 53 1dbq_A Purine repressor; trans  96.5   0.028 1.2E-06   30.2  19.6  205   15-240     4-213 (289)
 54 3jy6_A Transcriptional regulat  96.5   0.028 1.2E-06   30.2  22.4  199   16-239     5-206 (276)
 55 3k4h_A Putative transcriptiona  96.5   0.028 1.3E-06   30.2  16.7  204   15-239     5-217 (292)
 56 3gyb_A Transcriptional regulat  96.5   0.028 1.3E-06   30.2  13.8  194   18-239     5-201 (280)
 57 1gud_A ALBP, D-allose-binding   96.5    0.03 1.3E-06   30.1  19.2   92   19-121     2-94  (288)
 58 2fep_A Catabolite control prot  96.3   0.038 1.7E-06   29.4  19.0  199   17-239    15-220 (289)
 59 3dbi_A Sugar-binding transcrip  96.3    0.04 1.8E-06   29.3  19.8  204   17-240    60-268 (338)
 60 3c3k_A Alanine racemase; struc  96.1    0.05 2.2E-06   28.7  22.2  199   15-239     5-209 (285)
 61 3k9c_A Transcriptional regulat  96.0   0.052 2.3E-06   28.6  16.6  198   16-239    10-210 (289)
 62 3cs3_A Sugar-binding transcrip  95.9   0.059 2.6E-06   28.3  16.8  191   17-238     7-201 (277)
 63 3e61_A Putative transcriptiona  95.9   0.061 2.7E-06   28.2  20.8  197   14-240     4-203 (277)
 64 2h0a_A TTHA0807, transcription  95.6   0.078 3.5E-06   27.6  13.3  196   20-239     1-205 (276)
 65 3bil_A Probable LACI-family tr  95.6   0.079 3.5E-06   27.5  19.1  200   16-239    64-266 (348)
 66 2fqx_A Membrane lipoprotein TM  95.5   0.084 3.7E-06   27.4  21.0  209   16-248     2-222 (318)
 67 3kke_A LACI family transcripti  95.2    0.11 4.7E-06   26.7  18.3  207   11-240     8-223 (303)
 68 1qpz_A PURA, protein (purine n  95.0    0.12 5.4E-06   26.4  20.5  204   16-240    56-264 (340)
 69 3hs3_A Ribose operon repressor  95.0    0.12 5.5E-06   26.3  16.1  196   13-239     5-203 (277)
 70 3egc_A Putative ribose operon   93.3    0.29 1.3E-05   24.2  18.5  202   16-240     6-212 (291)
 71 3e3m_A Transcriptional regulat  93.0    0.31 1.4E-05   23.9  21.4  201   17-240    69-276 (355)
 72 3kjx_A Transcriptional regulat  91.6    0.47 2.1E-05   22.9  18.2  201   16-239    66-272 (344)
 73 3h5t_A Transcriptional regulat  91.1    0.53 2.3E-05   22.6  14.3  204   17-239    67-293 (366)
 74 1jye_A Lactose operon represso  89.7     0.7 3.1E-05   21.8  21.4  202   15-240    58-264 (349)
 75 2w7t_A CTP synthetase, putativ  89.0    0.79 3.5E-05   21.5   6.4   95   15-118     5-103 (273)
 76 2v4u_A CTP synthase 2; pyrimid  88.6    0.83 3.7E-05   21.4  11.2   95   15-118    22-126 (289)
 77 2o20_A Catabolite control prot  87.6    0.97 4.3E-05   21.0  20.0  200   15-239    60-264 (332)
 78 3h5o_A Transcriptional regulat  85.3     1.3 5.7E-05   20.2  18.2  201   16-240    60-265 (339)
 79 2hsg_A Glucose-resistance amyl  83.9     1.5 6.6E-05   19.9  15.4  202   15-239    57-264 (332)
 80 2hqb_A Transcriptional activat  83.6     1.5 6.8E-05   19.8  19.0  192   20-238     7-205 (296)
 81 1vco_A CTP synthetase; tetrame  67.1     4.3 0.00019   17.1   5.7   16  194-209   282-297 (550)
 82 3ctp_A Periplasmic binding pro  66.9     4.4 0.00019   17.1  17.8  196   16-240    58-257 (330)
 83 3dnf_A ISPH, LYTB, 4-hydroxy-3  63.6     5.1 0.00022   16.7   6.3   67  155-226   156-222 (297)
 84 2dgd_A 223AA long hypothetical  61.9     5.4 0.00024   16.5   8.6   47  146-195    98-145 (223)
 85 1y0b_A Xanthine phosphoribosyl  57.3     6.5 0.00029   16.0   5.1  122   68-192    31-156 (197)
 86 3a8t_A Adenylate isopentenyltr  50.6     7.3 0.00033   15.7   2.4   43   77-119    31-73  (339)
 87 1s1m_A CTP synthase; CTP synth  50.3     8.5 0.00038   15.3   6.8   14  195-208   272-285 (545)
 88 2c95_A Adenylate kinase 1; AP4  49.8     8.7 0.00039   15.3   3.4   36   83-118     6-41  (196)
 89 2zzv_A ABC transporter, solute  43.7      11 0.00048   14.7   4.7   41   18-69     35-75  (361)
 90 2hzl_A Trap-T family sorbitol/  43.4      11 0.00049   14.7   3.5   60   18-90     33-93  (365)
 91 2eq5_A 228AA long hypothetical  42.6     4.2 0.00019   17.1   0.1   89   17-118     5-104 (228)
 92 2rgx_A Adenylate kinase; trans  40.7      12 0.00053   14.4   2.4   31   88-118     2-32  (206)
 93 3jvd_A Transcriptional regulat  39.4      13 0.00056   14.3  19.2  193   15-239    61-256 (333)
 94 1o57_A PUR operon repressor; p  36.0      14 0.00064   14.0   4.2  141   45-192    87-232 (291)
 95 3ke8_A 4-hydroxy-3-methylbut-2  35.2      15 0.00065   13.9   5.1   16   37-52     24-39  (326)
 96 3dl0_A Adenylate kinase; phosp  34.4      15 0.00068   13.8   2.4   31   89-119     3-33  (216)
 97 2bbw_A Adenylate kinase 4, AK4  33.8      14 0.00064   13.9   1.7   33   87-119    28-60  (246)
 98 3cm0_A Adenylate kinase; ATP-b  33.3      15 0.00065   13.9   1.7   33   86-118     4-36  (186)
 99 3exa_A TRNA delta(2)-isopenten  33.2      16 0.00071   13.7   2.7   34   86-119     3-36  (322)
100 1aky_A Adenylate kinase; ATP:A  30.9      17 0.00077   13.5   2.5   31   89-119     7-37  (220)
101 1zd8_A GTP:AMP phosphotransfer  30.6      18 0.00078   13.4   2.6   31   89-119    10-40  (227)
102 3ixl_A Amdase, arylmalonate de  30.6      18 0.00078   13.4  13.5   40  152-194   114-153 (240)
103 1ytl_A Acetyl-COA decarbonylas  30.0      18  0.0008   13.4   3.9   45   77-121    27-71  (174)
104 3gxa_A Outer membrane lipoprot  29.1      19 0.00083   13.3   5.5   59   15-94     21-80  (275)
105 3fb4_A Adenylate kinase; psych  28.6      19 0.00085   13.2   2.2   30   89-118     3-32  (216)
106 1ak2_A Adenylate kinase isoenz  28.1      19 0.00086   13.2   2.5   31   89-119    19-49  (233)
107 3gmt_A Adenylate kinase; ssgci  28.0      19 0.00087   13.2   1.9   31   89-119    11-41  (230)
108 1e4v_A Adenylate kinase; trans  27.5      20 0.00088   13.1   2.0   31   89-119     3-33  (214)
109 1di6_A MOGA, molybdenum cofact  27.5      20 0.00089   13.1   7.0   72   17-95      2-74  (195)
110 1vch_A Phosphoribosyltransfera  26.6      21 0.00092   13.0   6.0  119   68-192    31-156 (175)
111 1ukz_A Uridylate kinase; trans  26.3      21 0.00093   13.0   2.6   33   86-118    15-47  (203)
112 2bwj_A Adenylate kinase 5; pho  25.9      21 0.00094   12.9   2.6   35   84-118    10-44  (199)
113 1qf9_A UMP/CMP kinase, protein  24.5      23   0.001   12.8   2.0   32   87-118     7-38  (194)
114 3d3q_A TRNA delta(2)-isopenten  22.2      25  0.0011   12.5   3.0   34   86-119     7-40  (340)
115 2vvr_A Ribose-5-phosphate isom  21.8      26  0.0011   12.4   8.4   55  156-212     2-56  (149)
116 1tev_A UMP-CMP kinase; ploop,   21.7      26  0.0011   12.4   2.4   32   87-118     4-35  (196)
117 1uxo_A YDEN protein; hydrolase  21.1      26  0.0012   12.4   9.2   81  154-234     3-84  (192)
118 3crm_A TRNA delta(2)-isopenten  20.6      27  0.0012   12.3   2.7   31   88-118     7-37  (323)
119 1p99_A Hypothetical protein PG  20.3      27  0.0012   12.3   5.6   52   17-91     39-90  (295)

No 1  
>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00  E-value=0  Score=400.92  Aligned_cols=363  Identities=21%  Similarity=0.234  Sum_probs=319.6

Q ss_pred             CCCEEEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             6835899982466770567-899999999999999855797698589999972788989999999999864885121147
Q T0528            16 ADDLKIALIYGKTGPLEAY-AKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~-g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      +||||||++.|+||+++.+ |+++++|++||++++|  || ++||+|+|+++|++++|..+++++++|+++++|.+|+|+
T Consensus         2 ad~IkIG~~~p~SG~~a~~~G~~~~~g~~lav~~iN--Gg-i~Gr~velv~~D~~~~p~~a~~~~~~li~~~~V~aiiG~   78 (375)
T 3i09_A            2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFG--GK-VNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG   78 (375)
T ss_dssp             CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHT--SE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             987699998078774302288899999999999967--98-799788999955999989999999999962897699950


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA  173 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~  173 (388)
                      .+|..+.++.+++++.++|+|++.++++.+++..+++++|++.++..++...++.++. +++|++++|++|++||+....
T Consensus        79 ~~S~~~~a~~~~a~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~k~v~~i~~d~~~g~~~~~  158 (375)
T 3i09_A           79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK  158 (375)
T ss_dssp             SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf             55167778777887608753344445532346677763344146649999999999875137789995168718789999


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCC-CCCCHH
Q ss_conf             9999998639859984101754331289999999843357645899960520789999999715300362112-355301
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELS-TGGNIL  252 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  252 (388)
                      .+++.+++.|++++...+++.+++||++++++++.+++|   .+++.....+...+++++++.+......... ......
T Consensus       159 ~~~~~~~~~G~~vv~~~~~~~~~~df~~~v~~i~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  235 (375)
T 3i09_A          159 NTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQ---ILGLANAGGDTVNAIKAAKEFGITKTMKLAALLMFIND  235 (375)
T ss_dssp             HHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCS---EEEEECCHHHHHHHHHHHHHTTGGGTCEEEESSCCHHH
T ss_pred             HHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf             999988744964888896067565413799887625998---89990577068999999998098876599970365588


Q ss_pred             HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             22211010055257402257877898999999999997088987568999999999999999618998899999996187
Q T0528           253 PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGME  332 (388)
Q Consensus       253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~  332 (388)
                      .........+|++....+.+  ..++..++|.++|+++++..|+.++..+||+++++++|++++|+.|+++|+++|++++
T Consensus       236 ~~~~~~~~~~G~~~~~~~~~--~~~~~~~~f~~~y~~~~~~~p~~~~~~~Yda~~~~~~Ai~~ags~d~~~v~~aL~~~~  313 (375)
T 3i09_A          236 VHALGLETTQGLVLTDSWYW--NRDQASRQWAQRYFAKMKKMPSSLQAADYSSVTTYLKAVQAAGSTDSDKVMAQLKKMK  313 (375)
T ss_dssp             HHHHCHHHHTTCEEEESCCT--TSSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             88641353178045225662--1245679999999887579998789999999999999999858999999999985498


Q ss_pred             CCCCEEEEEECCCCCCCCCCEEEEEEEECC--CEEECCCCCCCCCCHHHHCCCHHHC
Q ss_conf             555324789724788502437999998568--2420212122317878814305406
Q T0528           333 FDTPKGKMVFRKEDHQALQSMYHFKVKVDP--AVAWAVLEPVRELKIEEMNIPIKNK  387 (388)
Q Consensus       333 ~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~v~~~~~~~~~~p~~~~  387 (388)
                      |+++.|+++|++ ||+..+++|+.|++.++  ++.|++++.+.++|++++.+|..+.
T Consensus       314 ~~~~~G~~~~~~-d~~~~~~~y~~~v~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~  369 (375)
T 3i09_A          314 IDDFYAKGYIRT-DGSMIHDMYLMEVKKPSESKEPWDYYKVVATIPGEQAFTTKQET  369 (375)
T ss_dssp             EESSSCEEEECT-TSBEECCEEEEEECCGGGCCSTTCCEEEEEEECHHHHSCCTTTC
T ss_pred             CCCCCCCEEECC-CCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCHHHCCCCCCCC
T ss_conf             427876669999-99841557999998788777776346065455889837998878


No 2  
>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170}
Probab=100.00  E-value=0  Score=391.28  Aligned_cols=367  Identities=22%  Similarity=0.242  Sum_probs=311.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      ++||||||++.|+||+.+ +|.++++|++||+|++|++||+++||+|+++++|++++|..+.+++++|+.++++.+|+|+
T Consensus         2 a~~~ikIG~~~~~sG~~a-~g~~~~~g~~la~e~iN~~GG~l~Gr~ielv~~D~~~~p~~a~~~~~~Li~~~~v~aiiG~   80 (387)
T 3i45_A            2 SLEAIRIGEINSYSQIPA-FTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGT   80 (387)
T ss_dssp             CCCCEEEEEEECTTTCHH-HHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCCEEEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             888769999736877033-3399999999999999866997099899999973899999999999999963897699962


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHH
Q ss_conf             75133778889998649778642677610157776534897347657888999999971-89389998548743223478
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVA  173 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~~~  173 (388)
                      .+|..+.++.+++.+.++|+|++.+.++.++....++++|++.++..++...++.++.+ +++++++|++|++||+....
T Consensus        81 ~~s~~~~a~~~~~~~~~ip~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~d~~~g~~~~~  160 (387)
T 3i45_A           81 FLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVA  160 (387)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf             68812789999999839753345544420003568872686147678899999999886287178544789678899999


Q ss_pred             HHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC--CCCCCC
Q ss_conf             99999986398--59984101754331289999999843357645899960520789999999715300362--112355
Q T0528           174 AFKEALAKTGA--TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI--ELSTGG  249 (388)
Q Consensus       174 ~~~~~~~~~g~--~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  249 (388)
                      .+++.+++.|+  +++....++.+++||+++++++++..+|   .+++.....+...+++++...+......  ......
T Consensus       161 ~~~~~~~~~g~~v~~v~~~~~~~~~~D~~~~i~~i~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  237 (387)
T 3i45_A          161 RFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPE---GLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGE  237 (387)
T ss_dssp             HHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCS---EEEECCCTTHHHHHHHHHHHHTSSTTCEEEEEEEES
T ss_pred             HHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             88877752366136887664026651167898888860983---899993337899999999981887676034302457


Q ss_pred             CHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             30122211010055257402257877898999999999997088987568999999999999999618998899999996
Q T0528           250 NILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAME  329 (388)
Q Consensus       250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~  329 (388)
                      ............+|+.....+ ....++|..++|+++|+++||..|+.++..+||+++++++|++++|+.|+++|+++|+
T Consensus       238 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~f~~~y~~~~g~~p~~~~~~~yda~~~l~~Al~~ag~~~~~~v~~aL~  316 (387)
T 3i45_A          238 PEYLNPLKDEAPEGWIVTGYP-WYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFEKAGGTESETLVETLK  316 (387)
T ss_dssp             HHHHGGGGGGCCSSCEEEECC-GGGCCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             044332111212685797315-6678998999999999998689997688999999999999999878999999999996


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCEEEEEEE-ECCC---EEECCCCCCCCCCHHHHC---CCHHH
Q ss_conf             187555324789724788502437999998-5682---420212122317878814---30540
Q T0528           330 GMEFDTPKGKMVFRKEDHQALQSMYHFKVK-VDPA---VAWAVLEPVRELKIEEMN---IPIKN  386 (388)
Q Consensus       330 ~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~v~~~~~~~~~---~p~~~  386 (388)
                      +++|+|+.|+++|+++|||..+++++.+++ .||+   +.|...+....+|++++.   .|+.+
T Consensus       317 ~~~~~g~~G~v~f~~~~hq~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~  380 (387)
T 3i45_A          317 DMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGSVLPPPEVVSAWRPAGE  380 (387)
T ss_dssp             TCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGGGSCCHHHHHTTSCCC-
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCEECCCHHHHHCCCCCCC
T ss_conf             4986377268998079997555547999999889289965896268320598678754785677


No 3  
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00  E-value=0  Score=377.72  Aligned_cols=354  Identities=17%  Similarity=0.256  Sum_probs=299.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      .+++|+||+++|+||+++.+|+.+.+|++||+|++|++|| |+||+|+++++|++++|..+++++++|+.+++|.+|+|+
T Consensus         4 ~~~~~~IG~~~~lsG~~a~~G~~~~~g~~lAve~iN~~GG-i~Gr~iel~~~D~~~~p~~a~~~a~~li~~d~V~aiiG~   82 (385)
T 1pea_A            4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGG-VGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC   82 (385)
T ss_dssp             ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTT-BTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             8898779998378684265509999999999999984299-788698999977999999999999999961897699978


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA  173 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~  173 (388)
                      .+|..+.++.+++++.++|++++.+.+    ....++++|++.++..++...++.++. ++++++++++.|++||+....
T Consensus        83 ~~S~~~~a~~~~~~~~~vp~i~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~va~~~~d~~~g~~~~~  158 (385)
T 1pea_A           83 YMSHTRKAVMPVVERADALLCYPTPYE----GFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNH  158 (385)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEECSCCC----CCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCC----CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf             850888999999997397267345577----6557898788326718989999999987178479982267762355655


Q ss_pred             HHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC--CCCCCC
Q ss_conf             99999986398599841017--54331289999999843357645899960520789999999715300362--112355
Q T0528           174 AFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI--ELSTGG  249 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  249 (388)
                      .+++.+++.|++|+...+++  ++++||++++++++++++|   .+++.....+...++++..+.+.....+  ......
T Consensus       159 ~~~~~~~~~G~~vv~~~~~~~~~~~~D~~~~v~~i~~~~pd---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  235 (385)
T 1pea_A          159 VMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARAD---VVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTS  235 (385)
T ss_dssp             HHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCS---EEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCC
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             46666664168357899616764420168999998751899---899996347799999999984799886499966776


Q ss_pred             CHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             3012221101005525740225787789899999999999708898--75689999999999999996189988999999
Q T0528           250 NILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP--DFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAA  327 (388)
Q Consensus       250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p--~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~a  327 (388)
                      .............+......+ +...++|.+++|+++|+++|+..|  +.++..+||+++++++|++++|+.|+++|+++
T Consensus       236 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~f~~~~~~~~g~~~~~~~~a~~~Y~a~~~la~Ai~~aGs~d~~~i~~a  314 (385)
T 1pea_A          236 EAEVAKMESDVAEGQVVVAPY-FSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRH  314 (385)
T ss_dssp             HHHHTTSCHHHHTTCEEEESC-CTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             CHHHHHHCCCCCCCCEEECCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             677763234001671131256-7767986778999999997287888772899999999999999998789999999999


Q ss_pred             HHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC--EEECCCCCCCCCCH
Q ss_conf             961875553247897247885024379999985682--42021212231787
Q T0528           328 MEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA--VAWAVLEPVRELKI  377 (388)
Q Consensus       328 L~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~v~~~~~  377 (388)
                      |++++|+++.|+++||+.+||..+++||+|++.||.  +.|...+||.+-|.
T Consensus       315 L~~~~~~~~~G~i~f~~~~~~~~~~~~i~~v~~dG~~~vv~~~~~~v~p~p~  366 (385)
T 1pea_A          315 LYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY  366 (385)
T ss_dssp             HTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEECSSCBCCCSS
T ss_pred             HHCCCEECCCCCEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf             8269624795567985899802687699999479978999426983689987


No 4  
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00  E-value=0  Score=355.29  Aligned_cols=345  Identities=17%  Similarity=0.178  Sum_probs=299.3

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+|+||+++|+||+++.+|+++.+|++||++++|+.|| ++||+|+++++|++++|..+.+++++|+.+++|++|+||.
T Consensus         2 ~~~I~IG~~~p~sG~~a~~G~~~~~g~~la~~~iN~~gg-i~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~aviG~~   80 (358)
T 3hut_A            2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGG-VGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF   80 (358)
T ss_dssp             -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             975699998588781277789999999999999986599-6986989999738999999999999998549943996686


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHH
Q ss_conf             5133778889998649778642677610157776534897347657888999999971-893899985487432234789
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDGVAA  174 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~~~~  174 (388)
                      +|..+.++.+++++.++|+|++.++++.++.  .++++|++.+++..++..++.++.. +++++++++.+++||+.....
T Consensus        81 ~s~~~~a~~~~~~~~~ip~i~~~a~~~~~~~--~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~g~~~~~~  158 (358)
T 3hut_A           81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIK--ISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQA  158 (358)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEESSCCCGGGTT--SCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
T ss_conf             4288999999863245443344456831013--68846995226088999999888760781699960567265899999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH
Q ss_conf             99999863985998410175433128999999984335764589996052078999999971530036211235530122
Q T0528           175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPA  254 (388)
Q Consensus       175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (388)
                      +++.+++.|++++....+++++.|+++++.++++.++|   .+++.........++.++.+.+.....+...........
T Consensus       159 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~l~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  235 (358)
T 3hut_A          159 FRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQ---AIYLAMAYEDAAPFLRALRARGSALPVYGSSALYSPKFI  235 (358)
T ss_dssp             HHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHHHTTCCCCEEECGGGCSHHHH
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
T ss_conf             86445406978999995599873115899999865999---999973668899999999981999865642056776776


Q ss_pred             HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHCC-C
Q ss_conf             2110100552574022578778989999999999970889875689999999999999996189-9889999999618-7
Q T0528           255 LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKS-TDTEKLIAAMEGM-E  332 (388)
Q Consensus       255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~-~~~~~v~~aL~~~-~  332 (388)
                      .......++.+....+. ....+|..++|.++|+++||.+|+.++..+||+++++++|++++|+ .+++.|+++|+++ +
T Consensus       236 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~g~~p~~~~~~~Yda~~l~~~Al~~ag~~~~~~~l~~aL~~~~~  314 (358)
T 3hut_A          236 DLGGPAVEGVRLATAFV-LGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAGPEVTRESLRDALAATDR  314 (358)
T ss_dssp             HHHGGGGTTCEEEESCC-TTCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHTCCS
T ss_pred             HHCCHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf             40221321872234566-65799899999999999868899767999999999999999987899999999999974799


Q ss_pred             CCCCEEEEEECCCCCCCCCCEEEEEEEECCCEEECCCC
Q ss_conf             55532478972478850243799999856824202121
Q T0528           333 FDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVAWAVLE  370 (388)
Q Consensus       333 ~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      |+|++|+++|++++|+...++++.+++ +|  .|..++
T Consensus       315 ~~g~~G~i~f~~~~~~~~~~~~~~~~~-~G--~~~~v~  349 (358)
T 3hut_A          315 YAGVTGITRFDPETRETTKILTRLVVR-EG--DFRVID  349 (358)
T ss_dssp             EEETTEEEEECTTTCCEEECCEEEEEE-TT--EEEEC-
T ss_pred             CCCCCEEEEECCCCCCCCCCEEEEEEE-CC--EEEEEE
T ss_conf             716726899899969257767999999-99--899997


No 5  
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00  E-value=0  Score=352.19  Aligned_cols=356  Identities=14%  Similarity=0.092  Sum_probs=276.5

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCH-HHHHHHHHHHHHCCCCCC
Q ss_conf             0035683589998246677056789999999999999985579769858999997278898-999999999986488512
Q T0528            12 AVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKP-DLSKAALAEAYQDDGADI   90 (388)
Q Consensus        12 ~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~-~~a~~~~~~li~~~~v~~   90 (388)
                      .+.++||||||+++|+||+++..|+++.+|++||+|++|+.|| |.||+|+|+++|+++|| ..+.+++++|+++++|.+
T Consensus         8 ~a~~~d~IkIG~~~plsG~~a~~G~~~~~g~~lA~e~iN~~Gg-i~G~~i~lv~~D~~~~p~~~a~~~a~~Li~~~~V~~   86 (419)
T 3h5l_A            8 QAQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGG-ILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASA   86 (419)
T ss_dssp             -----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTS-BTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             3257998799998278684044119999999999999984199-688688999977999979999999999984179548


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEECCCCC--CCCCCC--CCCCEEEEECCCHHHHHHHHHHHHH---------HCCCE
Q ss_conf             1147751337788899986497786426776--101577--7653489734765788899999997---------18938
Q T0528            91 AIGTSSSAAALADLPVAEENKKILIVEPAVA--DQITGE--KWNRYIFRTGRNSSQDAISNAVAIG---------KQGVT  157 (388)
Q Consensus        91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  157 (388)
                      |+|+++|..+.++++++++.++|+|++.+++  ..++..  ..+.++++..++..........++.         +++++
T Consensus        87 iiG~~~S~~~~av~~~~~~~~ip~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  166 (419)
T 3h5l_A           87 LIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK  166 (419)
T ss_dssp             EECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred             EECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             75686626667777668636856995056556710115677644202136640699999999988888877763268878


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC-HHHHHHHHHHHH
Q ss_conf             9998548743223478999999863985998410175433128999999984335764589996052-078999999971
Q T0528           158 IATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWA-GGGDPLTKLQDM  236 (388)
Q Consensus       158 v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~  236 (388)
                      +++|++|++||+.....+++.+++.|++++..+.++++++||+++++++++.++|   .+++..... ....++.+....
T Consensus       167 vaii~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~~~~l~~i~~~~pd---~v~~~~~~~~~~~~~~~~~~~~  243 (419)
T 3h5l_A          167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPA---VIVVTHFYPQDQALFMNQFMTD  243 (419)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCS---EEEECCCCHHHHHHHHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCC---EEEEEECCCHHHHHHHHHHHHC
T ss_conf             9999537437789999999999973252221012553212100466665304997---8999722732458999998751


Q ss_pred             CCHHCCCCCCCCCCHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf             53003621123553012221101005525740225787789899999999999708898-75689999999999999996
Q T0528           237 DPKRYGIELSTGGNILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP-DFFTAGGFSAAMAVVTAVQK  315 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p-~~~a~~~Yda~~~~~~Ai~~  315 (388)
                      +.....+...................|+.....  +..+.++..++|.++|+++||..| +.++..+||+++++++|+++
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~f~~~y~~~~g~~~~~~~~~~aYdav~~la~Ai~~  321 (419)
T 3h5l_A          244 PTNSLVYLQYGASLAAFRDIAGDNSVGVTYATV--LGTLQDEMGDAFAKAYKERYGDLSSTASGCQTYSALYAYSIAAAL  321 (419)
T ss_dssp             CCSCEEEECSGGGSHHHHHHHGGGGTTCEEEES--SCCCSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             468729996266637888654652164289723--788899788999999999818999860189999999999999998


Q ss_pred             HCCC-------CHHHHHHHHHCCCCCCCEEEEEECCCCCCCC------------CCEEEEEEEECC-CEEECCCCCCC
Q ss_conf             1899-------8899999996187555324789724788502------------437999998568-24202121223
Q T0528           316 AKST-------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQAL------------QSMYHFKVKVDP-AVAWAVLEPVR  373 (388)
Q Consensus       316 ag~~-------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~------------~~~~i~~~~~~~-~~~~~~~~~v~  373 (388)
                      +|+.       |+++|+++|++++|+|++|+++|++++|+..            .+..++|++... .....|+++..
T Consensus       322 ag~~~~~~~~~~~~~l~~aL~~~~~~g~~G~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~v~P~~~~  399 (419)
T 3h5l_A          322 AGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAEDGVLIAPAPYK  399 (419)
T ss_dssp             TTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTSCCEEEESTTSC
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
T ss_conf             586667889876999999984198477856799889997444455534576677645899998685105887776335


No 6  
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=332.97  Aligned_cols=341  Identities=18%  Similarity=0.168  Sum_probs=287.3

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             35683589998246677056789999999999999985579769858999997278898999999999986488512114
Q T0528            14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG   93 (388)
Q Consensus        14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G   93 (388)
                      .++++|+||++.|+||+++.+|+++.+|++++++++|++|| |+||+|+++++|++++|..+++++++|+++++|.+| |
T Consensus         3 ~~~~~i~ig~~~plSG~~a~~G~~~~~g~~~a~~~iN~~GG-i~Gr~ielv~~D~~~~p~~a~~~a~~lv~~~~v~~i-~   80 (392)
T 3lkb_A            3 LGQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKL-VPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVF-L   80 (392)
T ss_dssp             CCCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTS-STTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCE-E
T ss_pred             CCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE-E
T ss_conf             77885499998488784133049999999999999985399-698799999995899999999999999856996699-0


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHH
Q ss_conf             77513377888999864977864267761015777653489734765788899999997--1893899985487432234
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQGVTIATLAQDYAFGRDG  171 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~~g~~~  171 (388)
                      +.+|..+.++.+++++.++|+|++++++.. .....++|+|++.+++..+...+..++.  .+++++++|+++++||+..
T Consensus        81 ~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~-~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~kkvaii~~~~~~g~~~  159 (392)
T 3lkb_A           81 SYATGANLQLKPLIQELRIPTIPASMHIEL-IDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAP  159 (392)
T ss_dssp             ECCHHHHHHHHHHHHHHTCCEEESCCCGGG-GSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHCCCEEECCCCCCCE-ECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             798589999999986458018745566301-2268987279722636888888999998762897799993356303899


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf             78999999863985998410175433128999999984335764589996052078999999971530036211235530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI  251 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      ...+++.+++.|++++..+.++++++||++++++++++.+|   .+++.....+...+++++++.+.....+........
T Consensus       160 ~~~~~~~~~~~G~~v~~~~~~~~~~~D~~~~v~~i~~~~pd---~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~  236 (392)
T 3lkb_A          160 VEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVE---YVVHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGP  236 (392)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSH
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf             99999999874987999981489972355788876536998---999936626799999999983999649995567888


Q ss_pred             HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHH----CCCCHHH
Q ss_conf             12221101005525740225787789899999999999708898----756899999999999999961----8998899
Q T0528           252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP----DFFTAGGFSAAMAVVTAVQKA----KSTDTEK  323 (388)
Q Consensus       252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p----~~~a~~~Yda~~~~~~Ai~~a----g~~~~~~  323 (388)
                      ..........+|++....+.+...+. ...+|.++|+++|+..+    +.+...+|++++++++||+++    ++.+++.
T Consensus       237 ~~~~~~g~~~eG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~aa~~~~~Al~~A~~~~~~~t~~~  315 (392)
T 3lkb_A          237 DLIALAGDAAEGFLWATSFYMAHEDT-PGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNET  315 (392)
T ss_dssp             HHHHHHGGGGTTCEEEESBCCTTSCC-HHHHHHHHHHHHTTCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             89988788758779999527778870-51999999999858997767547999999999999999999886348999999


Q ss_pred             HHHHHHCCCCC-----------CCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             99999618755-----------5324789724788502437999998568
Q T0528           324 LIAAMEGMEFD-----------TPKGKMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       324 v~~aL~~~~~~-----------g~~G~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                      |+++|++++..           +..++++|++.||+...+++++|++ +|
T Consensus       316 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~dh~g~~~~~i~q~~-gg  364 (392)
T 3lkb_A          316 VYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK-GG  364 (392)
T ss_dssp             HHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE-TT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEE-CC
T ss_conf             99999838684322544444467786133073557787748999999-99


No 7  
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00  E-value=0  Score=330.57  Aligned_cols=340  Identities=18%  Similarity=0.197  Sum_probs=288.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      |+||||+++|+||+++.+|..+.+|++||++++|+.|| |+||+|+++++|++++|..+.+++++|+++ ++..++|+.+
T Consensus         1 d~I~IG~~~plSG~~a~~g~~~~~g~~lav~~iN~~gg-i~G~~v~l~~~D~~~~p~~a~~~a~~li~~-~~~~~i~~~~   78 (346)
T 1usg_A            1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGG-IKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHLC   78 (346)
T ss_dssp             CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSS
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEECCCC
T ss_conf             93899998388783377689999999999999987299-888168999945999989999999999866-9953544633


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHH
Q ss_conf             13377888999864977864267761015777653489734765788899999997--1893899985487432234789
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQGVTIATLAQDYAFGRDGVAA  174 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~~g~~~~~~  174 (388)
                      +..+.++.+.+++.++|++++.+++..+... .++++|+..++...+......+..  ..++++++++++++|++.....
T Consensus        79 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~  157 (346)
T 1usg_A           79 SSSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS  157 (346)
T ss_dssp             HHHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCHHHHCC-CCCCEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf             5641135555432134555665578244036-652200023332133444544321024552036741652012567877


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH
Q ss_conf             99999863985998410175433128999999984335764589996052078999999971530036211235530122
Q T0528           175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPA  254 (388)
Q Consensus       175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (388)
                      ++..+++.|++++..+.++.+++|+.++++++++.++|   .+++.........++.++.+.+.........+.......
T Consensus       158 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  234 (346)
T 1usg_A          158 VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID---FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLS  234 (346)
T ss_dssp             HHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCCTTHH
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC---EEEEEECCHHHHHEEEECCCCCCCCEEEEEEECCCCCCC
T ss_conf             65544134422788873362111013688888753874---699974443443214101223556303310001465312


Q ss_pred             HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf             21101005525740225787789899999999999708898756899999999999999961899889999999618755
Q T0528           255 LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFD  334 (388)
Q Consensus       255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~  334 (388)
                      ........|........+  ..++..++|.++|+++++..|+.++..+||+++++++|++++|+.++++|+++|++++|+
T Consensus       235 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~Yda~~~la~Al~~~gs~~~~~i~~al~~~~~~  312 (346)
T 1usg_A          235 NIAGDAAEGMLVTMPKRY--DQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGAN  312 (346)
T ss_dssp             HHHGGGGTTCEEEECCCG--GGSGGGHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEE
T ss_pred             CCCCCCCCCEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             111123331244214678--777202578999999747899824999999999999999988899899999999738986


Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEEEECCCE
Q ss_conf             532478972478850243799999856824
Q T0528           335 TPKGKMVFRKEDHQALQSMYHFKVKVDPAV  364 (388)
Q Consensus       335 g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~  364 (388)
                      |+.|+++||++++....+++++|++.||..
T Consensus       313 g~~G~i~fd~~G~~~~~~~~~~q~~~dg~~  342 (346)
T 1usg_A          313 TVIGPLNWDEKGDLKGFDFGVFQWHADGSS  342 (346)
T ss_dssp             ETTEEECBCTTSSBSSCCCEEEEECTTSCE
T ss_pred             CCEEEEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf             664889999996827898799999759859


No 8  
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00  E-value=0  Score=325.22  Aligned_cols=344  Identities=14%  Similarity=0.132  Sum_probs=286.1

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      +-.+|+||..+|+||+++.+|+++.+|+++|++++|++|| |+||+|+++++|++++|..+.+++++|+.++++.+|+|+
T Consensus         2 ~~~~i~i~~~lPltG~~a~~G~~~~~g~~la~~~iN~~GG-I~Gr~i~l~~~D~~~~p~~a~~~a~~li~~~~v~ai~G~   80 (364)
T 3lop_A            2 SLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGG-INGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTV   80 (364)
T ss_dssp             ---CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             7425799999789772276669999999999999985499-798787999981899999999999999854996799988


Q ss_pred             CCCHHHHHHH--HHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHH
Q ss_conf             7513377888--9998649778642677610157776534897347657888999999971-893899985487432234
Q T0528            95 SSSAAALADL--PVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~--~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~  171 (388)
                      .+|....++.  +.+.+.++|++++.++++.+..   .+++|++.+++.++...++.++.+ +++++++|++|++||+..
T Consensus        81 ~~s~~~~a~~~~~~~~~~~ip~i~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~iv~~d~~~g~~~  157 (364)
T 3lop_A           81 VGTANVEALMREGVLAEARLPLVGPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEA  157 (364)
T ss_dssp             CCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC---CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH
T ss_conf             8847889998899997559459982667745057---9958992367157899999999981998899998368326999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf             78999999863985998410175433128999999984335764589996052078999999971530036211235530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI  251 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      ...+++.+++.|++++....++.+++||+++++++++.++|   .+++.........++.++.+.+.....+........
T Consensus       158 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d---~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (364)
T 3lop_A          158 ITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQ---AIFLGATAEPAAQFVRQYRARGGEAQLLGLSSIDPG  234 (364)
T ss_dssp             HHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCS---EEEEESCHHHHHHHHHHHHHTTCCCEEEECTTSCHH
T ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             99999999976988999998379885368999999857989---999968789999999999983899769997578869


Q ss_pred             HHH-HHCHHHCCCEEEEEC-CCCCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHH
Q ss_conf             122-211010055257402-257877898999999999997088--9875689999999999999996189-98899999
Q T0528           252 LPA-LAAYKRLPGMEGATY-YYYDIPKNPINEWLVTEHQKRFNA--PPDFFTAGGFSAAMAVVTAVQKAKS-TDTEKLIA  326 (388)
Q Consensus       252 ~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~~~~~~~~g~--~p~~~a~~~Yda~~~~~~Ai~~ag~-~~~~~v~~  326 (388)
                      ... ..+.....+...... ..+....++..++|.+.|++.++.  .++.++..+||+++++++|++++|+ .|+++|++
T Consensus       235 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yda~~~~a~Al~~aG~~~t~~~v~~  314 (364)
T 3lop_A          235 ILQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPKPTREQVRH  314 (364)
T ss_dssp             HHHHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99987417865768999971676665899999999999985089999878999999999999999998779999999999


Q ss_pred             HHHCCCCCCC-EE-EEEECCCCCCCCCCEEEEEEEECCCEE
Q ss_conf             9961875553-24-789724788502437999998568242
Q T0528           327 AMEGMEFDTP-KG-KMVFRKEDHQALQSMYHFKVKVDPAVA  365 (388)
Q Consensus       327 aL~~~~~~g~-~G-~i~f~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                      +|+++++.+. .| +++|++++|+..+.+++.++..||.+.
T Consensus       315 aL~~~~~~~~~g~~~i~f~~~~~~~~~~~~~~~v~~~G~~~  355 (364)
T 3lop_A          315 ALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI  355 (364)
T ss_dssp             HHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred             HHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEE
T ss_conf             99718985788844883699887674348999997995899


No 9  
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00  E-value=0  Score=298.07  Aligned_cols=339  Identities=15%  Similarity=0.118  Sum_probs=262.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             6835899982466770567899999999999999855797698----589999972788989999999999864885121
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDG----RKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~G----r~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      +.+||||++.|+||+++.+|+.+.+|+++|++++|++|| |+|    |+|+++++|++++|..+++++++|+.+++|.+|
T Consensus         2 ~~TIkIG~~~~~SG~~a~~G~~~~~g~~~a~~~iN~~GG-i~G~~~~~~ve~v~~D~~~~p~~a~~~a~~Li~~~~v~~i   80 (391)
T 3eaf_A            2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGI-YTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAI   80 (391)
T ss_dssp             CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCE-ECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CCEEEEEEEECCCCCHHHHCHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             606999888478682455169999999999999987299-7788664489999856999999999999999856993899


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HC-CCEEEEEECCCHHH
Q ss_conf             1477513377888999864977864267761015777653489734765788899999997--18-93899985487432
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQ-GVTIATLAQDYAFG  168 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~i~~d~~~g  168 (388)
                      +|+ +|..+.++.+.+++.++|+++++++.. .+.   .+++|+..+....+......++.  .. .++++++..+++||
T Consensus        81 ~g~-~s~~~~a~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~g  155 (391)
T 3eaf_A           81 IGW-GTADTEKLSDQVDTDKITYISASYSAK-LLV---KPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS  155 (391)
T ss_dssp             EEC-CHHHHHHHHHHHHHHTCEEEESCCCGG-GTT---STTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH
T ss_pred             ECC-CCHHHHHHHHHHHHHCCEEECCCCCCC-CCC---CCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf             807-873677777999972732525766832-014---786012203770888999999998424760499983476424


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH--HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCC
Q ss_conf             234789999998639859984101754331289--999999843357645899960520789999999715300362112
Q T0528           169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTA--VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELS  246 (388)
Q Consensus       169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~--~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (388)
                      +.....++..+++.|++++....++.+.+|+..  ++.++++..+|   .+++.........+++++++.+.....+...
T Consensus       156 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~~~~pd---~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  232 (391)
T 3eaf_A          156 RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPD---YVWCGNTISSCSLLGRAMAKVGLDAFLLTNV  232 (391)
T ss_dssp             HTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCS---EEEECSCHHHHHHHHHHHHHHTCCCEEEECG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             7899999999997289368899714666765567787877525970---9999447279999999999759998299972


Q ss_pred             CCCCHHHHHHCHHHCCCEEEEECCCC---CCCCCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             35530122211010055257402257---877898999999999997088---98756899999999999999961899-
Q T0528           247 TGGNILPALAAYKRLPGMEGATYYYY---DIPKNPINEWLVTEHQKRFNA---PPDFFTAGGFSAAMAVVTAVQKAKST-  319 (388)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~f~~~~~~~~g~---~p~~~a~~~Yda~~~~~~Ai~~ag~~-  319 (388)
                      ................|.......+.   ...+.+..+.| .++.++++.   .++.++..+|++++++++|++++++. 
T Consensus       233 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gy~a~~~~~~Al~~a~~~~  311 (391)
T 3eaf_A          233 WGFDERSPQLIGEGGYGKVFGISPFIYPMFGQDVEGIQTI-FEAARMNGVSEDQINLRVVQGFVNVWLLIKAIESVTSQD  311 (391)
T ss_dssp             GGCSTTHHHHHCGGGTTSEEEEESBCCGGGCTTCHHHHHH-HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             6789999997556415619998710456557787889999-999998559999867799999999999999999974648


Q ss_pred             ----CHHHHHHHHHCCCCC--CC-EEEEEECCCCCCCCCCEEEEEEEECCCE
Q ss_conf             ----889999999618755--53-2478972478850243799999856824
Q T0528           320 ----DTEKLIAAMEGMEFD--TP-KGKMVFRKEDHQALQSMYHFKVKVDPAV  364 (388)
Q Consensus       320 ----~~~~v~~aL~~~~~~--g~-~G~i~f~~~~~~~~~~~~i~~~~~~~~~  364 (388)
                          ++++|+++|++.+|+  |+ .|+++|++++|+..++++++|+..+|+.
T Consensus       312 ~~~~t~~~l~~aLe~~~~~~~G~~~~~i~f~~~~h~~~~~~~~~~~~~~Gk~  363 (391)
T 3eaf_A          312 LQERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGEL  363 (391)
T ss_dssp             HHHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSE
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf             9988899999999618865688667745878888876553799999539889


No 10 
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00  E-value=3.9e-42  Score=269.44  Aligned_cols=342  Identities=10%  Similarity=0.040  Sum_probs=259.5

Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEECCCCHHHHHHHHHHHH--HCC
Q ss_conf             0356835899982466770567899999999999999855797----6985899999727889899999999998--648
Q T0528            13 VHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMT----LDGRKIVVITKDDQSKPDLSKAALAEAY--QDD   86 (388)
Q Consensus        13 ~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~----i~Gr~i~lv~~D~~~~~~~a~~~~~~li--~~~   86 (388)
                      +...++|+||+++|++|.++..|..+..|+++|++++|+.|+.    +.|++|+++++|+++++..+...+++++  .++
T Consensus         4 ~~~~~~i~igv~~P~~g~~~~~~~~~~~a~~~Av~~iN~~~~~~~~ll~g~~l~l~~~Dt~~~~~~a~~~~~~~~~~~~~   83 (441)
T 1jdp_A            4 ALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGA   83 (441)
T ss_dssp             CCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             78997119999977999422104679999999999998667855567899589999964999979999999999862457


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC
Q ss_conf             851211477513377888999864977864267761015777-653489734765788899999997-189389998548
Q T0528            87 GADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEK-WNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD  164 (388)
Q Consensus        87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d  164 (388)
                      +|.+|+||.+|..+.++++++..+++|+|+++++++.+++++ .++++||+.+++..++.+++.++. .+|+++++|+.+
T Consensus        84 ~v~aviGp~~S~~~~~va~~~~~~~ip~IS~~a~s~~ls~~~~~yp~~~rt~ps~~~~~~ai~~~l~~~~w~~va~i~~~  163 (441)
T 1jdp_A           84 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD  163 (441)
T ss_dssp             CCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             80899999870899999999997498399546588012147777773999533537899999876432242047999976


Q ss_pred             CHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf             7432234789999998---6398599841017543312899999998433576458999605207899999997153003
Q T0528           165 YAFGRDGVAAFKEALA---KTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY  241 (388)
Q Consensus       165 ~~~g~~~~~~~~~~~~---~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                      +++++.....++...+   ..+..+...........++..+... +...   ...+++.........++.++...+....
T Consensus       164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~ii~~~~~~~~~~i~~~a~~~g~~~~  239 (441)
T 1jdp_A          164 DKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRN-IQAS---ERVVIMCASSDTIRSIMLVAHRHGMTSG  239 (441)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHH-HHHH---CSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH-HCCC---CCEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf             86414689999999997176505999873245661778999987-5047---7549999358999999999998289888


Q ss_pred             CCCCCCCC---CH-----------HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-------CCHHHH
Q ss_conf             62112355---30-----------1222110100552574022578778989999999999970889-------875689
Q T0528           242 GIELSTGG---NI-----------LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAP-------PDFFTA  300 (388)
Q Consensus       242 ~~~~~~~~---~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-------p~~~a~  300 (388)
                      ...+....   ..           ...........+....   ....+.++..+.|.+++++.++..       ++.++.
T Consensus       240 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  316 (441)
T 1jdp_A          240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTV---TLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVE  316 (441)
T ss_dssp             TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEE---EECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHH
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             7699995533455434663123553116789998762421---3468898789999999999873268876766326789


Q ss_pred             HHHHHHHHHHHHHHHH----C-CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             9999999999999961----8-998899999996187555324789724788502437999998568
Q T0528           301 GGFSAAMAVVTAVQKA----K-STDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       301 ~~Yda~~~~~~Ai~~a----g-~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                      .+||++++++.|++++    + ..++.++.++|++++|+|++|+++||.+ ++....+.|++++...
T Consensus       317 ~~yDAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~F~G~tG~v~fd~~-Gdr~~~y~i~~~~~~~  382 (441)
T 1jdp_A          317 GFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDAN-GDRYGDFSVIAMTDVE  382 (441)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTT-SBBCCEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEEECC
T ss_conf             99999999999999998668998729999999757816648636998999-9835757999999889


No 11 
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth factor receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A*
Probab=100.00  E-value=7.7e-40  Score=255.69  Aligned_cols=335  Identities=12%  Similarity=0.045  Sum_probs=250.3

Q ss_pred             CEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-----CCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             35899982466770-56789999999999999985579769858999997278-----8989999999999864885121
Q T0528            18 DLKIALIYGKTGPL-EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQ-----SKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        18 ~IkIG~~~p~sG~~-a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~-----~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      .|+||+++|+||.. ...|+.+..|+++|+++||++++.+.|++|+++++|++     +++..+...+.+++.+++|.+|
T Consensus         2 ~i~ig~~~Plt~~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~Dt~~~~~~~~~~~a~~~a~~~~~~~~v~ai   81 (435)
T 1dp4_A            2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF   81 (435)
T ss_dssp             EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred             CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             46999997578974323405499999999999985889899918999999788964556978999999998863698699


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHH
Q ss_conf             1477513377888999864977864267761015777653489734765788899999997-189389998548743223
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRD  170 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~  170 (388)
                      +||.+|..+.++++++...++|+|+++++++.+++...+++++|+.|++..++.++..++. .+|+++++|+.++.+|..
T Consensus        82 iGp~~S~~~~~va~~~~~~~ip~is~~at~~~ls~~~~~~~f~R~~p~~~~~~~~~~~ll~~~~w~~v~ii~~~d~~g~~  161 (435)
T 1dp4_A           82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD  161 (435)
T ss_dssp             ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred             ECCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf             99987288999999998709727711567865455566763887312412666667779987499789999994786664


Q ss_pred             HH------HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCC
Q ss_conf             47------899999986398599841017543312899999998433576458999605207899999997153003621
Q T0528           171 GV------AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIE  244 (388)
Q Consensus       171 ~~------~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (388)
                      ..      ..++....+.+..+......+....++...+.. .+..   +..+++.........++.++.+.+.......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~---~~~ii~~~~~~~~~~~~~~a~~~g~~~~~~v  237 (435)
T 1dp4_A          162 RPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRA-VRRK---GRVIYICSSPDAFRNLMLLALNAGLTGEDYV  237 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHH-HHHH---CSEEEEESCHHHHHHHHHHHHHTTCCTTTCE
T ss_pred             CHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHH-HHCC---CCEEEEEECHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             22456788999999875565887763047642678999999-7418---8659996234777789999998088778669


Q ss_pred             CCCCCCHH--------------------HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH----HC-----CCC
Q ss_conf             12355301--------------------22211010055257402257877898999999999997----08-----898
Q T0528           245 LSTGGNIL--------------------PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKR----FN-----APP  295 (388)
Q Consensus       245 ~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~----~g-----~~p  295 (388)
                      +.......                    ..........+....   .+..+.++..++|.+++++.    ++     ..+
T Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (435)
T 1dp4_A          238 FFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKII---TYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK  314 (435)
T ss_dssp             EEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEE---EECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             9995534344312466434452012442037799877525662---2688898789999999999862236987554541


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH----CC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf             756899999999999999961----89-988999999961875553247897247885024379999985
Q T0528           296 DFFTAGGFSAAMAVVTAVQKA----KS-TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV  360 (388)
Q Consensus       296 ~~~a~~~Yda~~~~~~Ai~~a----g~-~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~  360 (388)
                      +.++...||++++++.|++++    +. .++..+.++|++++|+|++|+++||.+ ++....+.|+++..
T Consensus       315 ~~~a~~~ydAv~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~n-Gdr~~~y~i~~~~~  383 (435)
T 1dp4_A          315 NIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN-GDRDTDFSLWDMDP  383 (435)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT-SBBCCCEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEEC
T ss_conf             0789999999999999999998557998899999999858857668646998999-98246269999977


No 12 
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A*
Probab=100.00  E-value=1.7e-38  Score=247.58  Aligned_cols=338  Identities=12%  Similarity=-0.030  Sum_probs=257.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727-88989999999999864885121147
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDD-QSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~-~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      .+.||||.++|.++......+  ..++++|+++||++++.++|++|++.+.|+ .+++..+.+.+.+|++ ++|.+|+||
T Consensus         2 ~~vi~iG~if~~~~~~~~~~~--~~A~~~Av~~IN~~~~~l~~~~l~~~~~d~~~~~~~~a~~~~~~l~~-~~V~avIGp   78 (395)
T 3h6g_A            2 THVLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS-LGVAAIFGP   78 (395)
T ss_dssp             CEEEEEEEEEEESSSCSCCHH--HHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH-HCCSCEECC
T ss_pred             CCEEEEEEEEECCCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH-CCCEEEECC
T ss_conf             848999798607898776489--99999999999659998999779999984687899999999999886-598699988


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-189389998548743223478
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVA  173 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~  173 (388)
                      .+|..+.++++++...++|+|++++++..+..  .++++||+.|++..++.+++.++. .+|+++++|++++.++.....
T Consensus        79 ~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~~--~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~vaii~~~d~~~~~~~~  156 (395)
T 3h6g_A           79 SHSSSANAVQSICNALGVPHIQTRWKHQVSDN--KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQE  156 (395)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC--CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEESSTHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
T ss_conf             87277777667764048741232467745578--8862799623478888887776541343079999802124334368


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHH
Q ss_conf             99999986398599841017543312899999998433576458999605207899999997153003621123553012
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILP  253 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (388)
                       +.+.+.+.++++.. ..++.+..|+..++.+++...++   .+++.........++.++...+.......+........
T Consensus       157 -~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~i~~~~~~---~ivl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~  231 (395)
T 3h6g_A          157 -LIKAPSRYNLRLKI-RQLPADTKDAKPLLKEMKRGKEF---HVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLF  231 (395)
T ss_dssp             -HHTGGGTSSCEEEE-EECCSSGGGGHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGG
T ss_pred             -HHHHHHHCCCEEEE-EECCCCCCCHHHHHHHHHHCCCC---EEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             -99999752511234-30344544399999998607860---68841688999999999998477888569998165213


Q ss_pred             HHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf             2211010055257402257877898999999999997088------------9875689999999999999996189---
Q T0528           254 ALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA------------PPDFFTAGGFSAAMAVVTAVQKAKS---  318 (388)
Q Consensus       254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~------------~p~~~a~~~Yda~~~~~~Ai~~ag~---  318 (388)
                      .....................+.++..+.|.+.|.+++..            .++.++..+||++++++.|+++.+.   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~  311 (395)
T 3h6g_A          232 ALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV  311 (395)
T ss_dssp             GBCCTTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred             CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             44224444320353145641589755799999999985202666454446753334566657899999999998533578


Q ss_pred             -----------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCEEEEEEEECCC
Q ss_conf             -----------9889999999618755532478972478850-24379999985682
Q T0528           319 -----------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQA-LQSMYHFKVKVDPA  363 (388)
Q Consensus       319 -----------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~~  363 (388)
                                 .++..|.++|++++|+|++|++.||..+++. .-.+.|++++.++.
T Consensus       312 ~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~~g~~~~~~~~I~~~~~~~~  368 (395)
T 3h6g_A          312 SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL  368 (395)
T ss_dssp             CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEEECCCCCCCCCEEEEEEEECCEE
T ss_conf             876644577765599999998448723575008997899946573699999978937


No 13 
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A*
Probab=100.00  E-value=7e-36  Score=231.92  Aligned_cols=341  Identities=15%  Similarity=0.114  Sum_probs=254.5

Q ss_pred             CCEEEEEEECCCCC--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             83589998246677--------------0567899999999999999855797698589999972788989999999999
Q T0528            17 DDLKIALIYGKTGP--------------LEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEA   82 (388)
Q Consensus        17 ~~IkIG~~~p~sG~--------------~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~l   82 (388)
                      -.|.||.++|+...              ....|.....++.+|+|+||++...|+|.+|.+.++|+.+++..+++.+..+
T Consensus        16 Gdv~iGglFpih~~~~~~~~~~~~~~~~~~~~g~~~~~Am~~Aie~IN~~~~lLP~~~Lg~~i~Dtc~~~~~a~~~~~~~   95 (496)
T 3ks9_A           16 GDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEF   95 (496)
T ss_dssp             CSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf             89899999877265776778865544645433589999999999998589977899888589996689858999999999


Q ss_pred             HH----------------------------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf             86----------------------------48851211477513377888999864977864267761015777653489
Q T0528            83 YQ----------------------------DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIF  134 (388)
Q Consensus        83 i~----------------------------~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~  134 (388)
                      +.                            ..+|.+|+||.+|..+.++++++...++|+|+++++++.++++..+|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avIGp~~S~~s~~va~~~~~~~ip~ISy~ats~~lsd~~~yp~ff  175 (496)
T 3ks9_A           96 IRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFL  175 (496)
T ss_dssp             HSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf             98502343212355542256766465312467659999998618899999999765984785772785556644588769


Q ss_pred             EECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCC
Q ss_conf             734765788899999997-189389998548743223478999999863985998410175--43312899999998433
Q T0528           135 RTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALK  211 (388)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~  211 (388)
                      |+.|++..++.+++.++. .+|++|++|+.++++|......+++.+++.|++|+..+.++.  ...++..++.+++....
T Consensus       176 Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~~~~~~~~~~i~v~~~~~i~~~~~~~~~~~~i~~l~~~~~  255 (496)
T 3ks9_A          176 RVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLP  255 (496)
T ss_dssp             ESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTT
T ss_pred             EEECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             93178789999999999862997899999536788899999999999759879999982689987899999999887402


Q ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCC---HHHHHHCHHHCCCEEEEECCC---------------CC
Q ss_conf             576458999605207899999997153003621123553---012221101005525740225---------------78
Q T0528           212 DKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGN---ILPALAAYKRLPGMEGATYYY---------------YD  273 (388)
Q Consensus       212 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~---------------~~  273 (388)
                      + ..++++.........++.++...+.......+.....   ............+........               ..
T Consensus       256 ~-~rviV~~~~~~~~~~ll~~a~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~  334 (496)
T 3ks9_A          256 K-ARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDT  334 (496)
T ss_dssp             T-TCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred             C-CEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             6-427999846799999999999834557624999655443144421343223651343023202366899997557455


Q ss_pred             CCCCHHHHHHHHHHHHHHCC--------------------------CCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf             77898999999999997088--------------------------98756899999999999999961-----------
Q T0528           274 IPKNPINEWLVTEHQKRFNA--------------------------PPDFFTAGGFSAAMAVVTAVQKA-----------  316 (388)
Q Consensus       274 ~~~~~~~~~f~~~~~~~~g~--------------------------~p~~~a~~~Yda~~~~~~Ai~~a-----------  316 (388)
                      .+.++..++|.   ++.|+.                          .++.++.+.|||+++++.|+.+.           
T Consensus       335 ~~~n~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~~~  411 (496)
T 3ks9_A          335 NTRNPWFPEFW---QHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGL  411 (496)
T ss_dssp             CCSCTTHHHHH---HHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSC
T ss_pred             CCCCHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             67776799999---998588765322357640123553101244445438899999999999999999976006677775


Q ss_pred             ----CCCCHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             ----8998899999996187555324-789724788502437999998568
Q T0528           317 ----KSTDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       317 ----g~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                          ...++..|.+.|++++|+|++| +++||.+ ++....+.|++++...
T Consensus       412 ~~~~~~~~g~~l~~~l~~v~F~G~tG~~v~Fd~n-Gd~~~~y~I~n~q~~~  461 (496)
T 3ks9_A          412 CDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEK-GDAPGRYDIMNLQYTE  461 (496)
T ss_dssp             CGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTT-SCCCCEEEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHCCEEECCCCCEEEECCC-CCCCCCEEEEEEEECC
T ss_conf             5567778999999998628516799998998999-9704406999999868


No 14 
>2e4z_A Metabotropic glutamate receptor 7; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: MES; 3.30A {Rattus norvegicus}
Probab=100.00  E-value=1.3e-35  Score=230.26  Aligned_cols=344  Identities=14%  Similarity=0.081  Sum_probs=243.8

Q ss_pred             CCCEEEEEEECCCCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH-
Q ss_conf             6835899982466770----------56789999999999999985579769858999997278898999999999986-
Q T0528            16 ADDLKIALIYGKTGPL----------EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ-   84 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~----------a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~-   84 (388)
                      ...|.||.++|+.+..          ...|.....++++|+|+||+....|+|++|.+.++|+.+++..+++.+.+++. 
T Consensus        14 ~gdi~iGglfp~~~~~~~~~~~~~~~~~~g~~~~~A~~~Aie~IN~~~~lLp~~~L~~~i~Dt~~~~~~a~~~~~~~i~~   93 (501)
T 2e4z_A           14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA   93 (501)
T ss_dssp             CCSEEEEEEECCEEECSSSCSEEEECHHHHHHHHHHHHHHHHHHHHCSSSSSSCCEEEEEEECTTCHHHHHHHGGGGGGG
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             78889999998315588887665533103189999999999998589988999889999985179837999999999974


Q ss_pred             ---------------------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf             ---------------------48851211477513377888999864977864267761015777653489734765788
Q T0528            85 ---------------------DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQD  143 (388)
Q Consensus        85 ---------------------~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~  143 (388)
                                           ..++.+|+||.+|..+.++++++..+++|+|+++++++.++++..+|++||+.|++..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~aiIGp~~S~~~~~va~~~~~~~iP~IS~~sts~~ls~~~~yp~f~Rt~psd~~~  173 (501)
T 2e4z_A           94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQ  173 (501)
T ss_dssp             GCCC-----------------CCCEEEEECCSSHHHHHHHTTHHHHTTCCEEESSCCCGGGGCTTTTSSEEESSCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf             33356656323566543325778779999998518899999999971884104653644356655587358547987999


Q ss_pred             HHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHH-HHHHHHHHHC-CCCCCEEEE
Q ss_conf             899999997-189389998548743223478999999863985998-410175433128-9999999843-357645899
Q T0528           144 AISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLAT-EEYVPTTTTDFT-AVGQRLFDAL-KDKPGKKII  219 (388)
Q Consensus       144 ~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~-~~~~~~~~~d~~-~~~~~i~~~~-~d~~~~~~~  219 (388)
                      +.+++..+. .+|++|++|+.+++++......+.+.+++.++.++. ...++....+.. .....++... .....++++
T Consensus       174 ~~ai~~ll~~f~W~~Vaii~~~~~~g~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rviv~  253 (501)
T 2e4z_A          174 AQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVI  253 (501)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEESSHHHHHHHHHHHHHHHHTTCCCEEEEEEEC------CHHHHHHHHHHTTSTTCCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99999999967993899998335112489999999998749989999995688887467778999997540478669999


Q ss_pred             EEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH---HHHHHCHHHCCCEEEEECCC---------------CCCCCCHHHH
Q ss_conf             96052078999999971530036211235530---12221101005525740225---------------7877898999
Q T0528           220 WVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI---LPALAAYKRLPGMEGATYYY---------------YDIPKNPINE  281 (388)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~~~~  281 (388)
                      ..........+.++...+.......+......   ...........|........               ...+.++..+
T Consensus       254 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (501)
T 2e4z_A          254 FANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFA  333 (501)
T ss_dssp             ECCHHHHHHHHHHHHHTTCTTTSEEEECTTTTTCSGGGSSCHHHHTTCEEEEESCCCCHHHHHHHTTCCTTTCCSCTTHH
T ss_pred             ECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCHHHH
T ss_conf             34769999999999972446763389840324434221244100373576024444460056564120501267787899


Q ss_pred             HHHHHH-------------------------HHHHCCCCCHHHHHHHHHHHHHHHHHHHH---------------CCCCH
Q ss_conf             999999-------------------------99708898756899999999999999961---------------89988
Q T0528           282 WLVTEH-------------------------QKRFNAPPDFFTAGGFSAAMAVVTAVQKA---------------KSTDT  321 (388)
Q Consensus       282 ~f~~~~-------------------------~~~~g~~p~~~a~~~Yda~~~~~~Ai~~a---------------g~~~~  321 (388)
                      +|.+..                         ...++..++.++...|||+++++.|+++.               ...++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~yDAV~~~A~AL~~~~~~~~~~~~~~~~~~~~~~g  413 (501)
T 2e4z_A          334 EYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGG  413 (501)
T ss_dssp             HHHHHHTTCC-------------CCCCSGGGGCCSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHC--CCSSCTTTTTTCH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             99998519864544564334422376677624245666017899999999999999999876104577776656787889


Q ss_pred             HHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEE
Q ss_conf             99999996187555324-7897247885024379999985
Q T0528           322 EKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKV  360 (388)
Q Consensus       322 ~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~  360 (388)
                      ..|.+.|++++|+|.+| ++.||.+ ++....+.|++.+.
T Consensus       414 ~~l~~~l~~v~f~G~tG~~v~Fd~n-Gd~~~~y~I~~~q~  452 (501)
T 2e4z_A          414 KKLLKYIRHVNFNGSAGTPVMFNKN-GDAPGRYDIFQYQT  452 (501)
T ss_dssp             HHHHHHHTTCCEECTTSCEECCCTT-SBCCCCEEEEEEEC
T ss_pred             HHHHHHHCCCEEECCCCCEEEECCC-CCCCCEEEEEEEEE
T ss_conf             9999986078868899998898899-98133178999999


No 15 
>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A
Probab=100.00  E-value=6.9e-35  Score=225.93  Aligned_cols=324  Identities=9%  Similarity=0.037  Sum_probs=235.0

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      ++|+||.++|.+|.      +...|+++|++++|..++.+.+    .+..++.+|+..+++.+.+|+++ +|.+|+||.+
T Consensus         1 ~~i~iG~if~~~~~------~~~~a~~~Av~~iN~~~~~l~~----~~~~~~~~d~~~~~~~~~~l~~~-~V~aviGp~~   69 (388)
T 2wjw_A            1 NSIQIGGLFPRGAD------QEYSAFRVGMVQFSTSEFRLTP----HIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD   69 (388)
T ss_dssp             CCEEEEEEEETTCH------HHHHHHHHHHHHHCCSSCCEEE----EEEEECTTCHHHHHHHHHHHHHH-TCSCEEECCC
T ss_pred             CEEEEEEEECCCCH------HHHHHHHHHHHHHHCCCCCCCC----EEEEEECCCHHHHHHHHHHHHHC-CCEEEECCCC
T ss_conf             96999998779985------9999999999998408996376----48997169989999999999975-9869998897


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf             1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF  175 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~  175 (388)
                      |..+.++++++...++|+|++...+     ...++++|++.|+...   +++.++ ..+|+++++|++++.++. ....+
T Consensus        70 s~~~~av~~i~~~~~iP~is~~~~~-----~~~~~~~~~~~p~~~~---ai~~ll~~~~w~~vaii~~~~~~~~-~~~~~  140 (388)
T 2wjw_A           70 KKSVNTITSFCGTLHVSFITPSFPT-----DGTHPFVIQMRPDLKG---ALLSLIEYYQWDKFAYLYDSDRGLS-TLQAV  140 (388)
T ss_dssp             TTTHHHHHHHHHHHTCCEEECSCCC-----SSCCTTEEECSCCCHH---HHHHHHHHTTCCEEEEEECTTSCSH-HHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCCCCCCHHH---HHHHHHHHCCCCEEEEEECCCHHHH-HHHHH
T ss_conf             1899999999874388630244688-----7768675112868999---9999999849978999982750135-68999


Q ss_pred             HHHHHHCCCEEEEEEEC----CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf             99998639859984101----75433128999999984335764589996052078999999971530036211235530
Q T0528           176 KEALAKTGATLATEEYV----PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI  251 (388)
Q Consensus       176 ~~~~~~~g~~vv~~~~~----~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      .+.+.+.++++.....+    .+..+|+..++.++++..++   .+++.........++.+..+.+.......+......
T Consensus       141 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~---vivl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  217 (388)
T 2wjw_A          141 LDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQDLELKKER---RVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLG  217 (388)
T ss_dssp             HHHHHHHTCEEEEEECCCCCSSTHHHHTHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTSSGGGCEEEECSSB
T ss_pred             HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             99999709828999986058897478899999998736873---999964589999999999983777773699977874


Q ss_pred             HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHCC-----
Q ss_conf             122211010055257402257877898999999999997088--------9875689999999999999996189-----
Q T0528           252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA--------PPDFFTAGGFSAAMAVVTAVQKAKS-----  318 (388)
Q Consensus       252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~~~~Ai~~ag~-----  318 (388)
                      ...........+...........++++..+.|.++|++.+..        .++.++..+||+++++++|+++++.     
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~  297 (388)
T 2wjw_A          218 FTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEI  297 (388)
T ss_dssp             TTSTTGGGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             33300111104550699763257763367999999999764425666777756348899999999999999998512234


Q ss_pred             -----------------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf             -----------------988999999961875553247897247885024379999985682
Q T0528           319 -----------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA  363 (388)
Q Consensus       319 -----------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~  363 (388)
                                       ..+..+.++|++++|+|++|++.||+++++....+.|++++.++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~v~f~G~tG~i~Fd~~G~r~~~~~~i~~~~~~~~  359 (388)
T 2wjw_A          298 SRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP  359 (388)
T ss_dssp             ------CCTTCSSCCCCTTHHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCEEEEECCCCCCCCCEEEEEEEECCEE
T ss_conf             55666676456777766309999999961832237533799999787777799999979978


No 16 
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00  E-value=6.7e-35  Score=226.01  Aligned_cols=324  Identities=10%  Similarity=0.050  Sum_probs=240.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      ++|+||.++|.+|.      ....|+++|+|++|+.++.+.+ .   +..++..|+..+.+.+.+|+++ +|.+|+||.+
T Consensus         1 ~~i~IG~lf~~~~~------~~~~a~~~Av~~iN~~~~~l~~-~---~~~~~~~d~~~~~~~~~~l~~~-gV~aiiGp~~   69 (823)
T 3kg2_A            1 NSIQIGGLFPRGAD------QEYSAFRVGMVQFSTSEFRLTP-H---IDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD   69 (823)
T ss_dssp             CEEEEEEEEETTCH------HHHHHHHHHHHHTCCSSCEEEE-E---EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCC
T ss_pred             CEEEEEEEECCCCH------HHHHHHHHHHHHHHCCCCCCCC-E---EEEEECCCHHHHHHHHHHHHHC-CCEEEECCCC
T ss_conf             93899998789974------9999999999998339996376-4---8997089989999999999866-9879998997


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf             1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF  175 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~  175 (388)
                      |..+.+++++++..++|+|+++.+     ....+++++|+.|+.   ..+++..+ +.+|+++++|++ +++|......+
T Consensus        70 s~~~~~v~~~~~~~~iP~is~s~~-----~~~~~~~~~r~~p~~---~~ai~~ll~~~~W~~vaiiyd-~~~g~~~~~~~  140 (823)
T 3kg2_A           70 KKSVNTITSFCGTLHVSFITPSFP-----TDGTHPFVIQMRPDL---KGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAV  140 (823)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECSCC-----CSSCCSSEEECSCCC---HHHHHHHHHHTTCSEEEEEEC-GGGCTHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCEEEEECC-----CCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEEEE-CCHHHHHHHHH
T ss_conf             189999999998679819984537-----898896699958289---999999999879989999997-95538899999


Q ss_pred             HHHHHHCCCEEEEEEEC----CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH
Q ss_conf             99998639859984101----75433128999999984335764589996052078999999971530036211235530
Q T0528           176 KEALAKTGATLATEEYV----PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI  251 (388)
Q Consensus       176 ~~~~~~~g~~vv~~~~~----~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      .+.+.+.|++|......    ...++|+..++.++++..+   +++++.........++.++...+.......+...+..
T Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~~---~viv~~~~~~~~~~il~~a~~~g~~~~~~~wi~~~~~  217 (823)
T 3kg2_A          141 LDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKE---RRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLG  217 (823)
T ss_dssp             HHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTC---CEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSB
T ss_pred             HHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             9999976998999998715888744779999998762599---8899993527878999999973778874699983740


Q ss_pred             HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHCC-----
Q ss_conf             12221101005525740225787789899999999999708--------89875689999999999999996189-----
Q T0528           252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--------APPDFFTAGGFSAAMAVVTAVQKAKS-----  318 (388)
Q Consensus       252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~a~~~Yda~~~~~~Ai~~ag~-----  318 (388)
                      .......................++++..+.|.++|++.+.        ..++.++..+||++++++.|+++...     
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~yDAv~~~A~Al~~~~~~~~~~  297 (823)
T 3kg2_A          218 FTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEI  297 (823)
T ss_dssp             SSSSCCSSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCCCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             01333200103452377888525896677889999999875427888887766466666559999999999987436665


Q ss_pred             -----------------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf             -----------------988999999961875553247897247885024379999985682
Q T0528           319 -----------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA  363 (388)
Q Consensus       319 -----------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~  363 (388)
                                       ..+..+.++|++++|+|++|++.||.+++.....+.|++++.++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~Gdr~~~~~~i~~l~~~~~  359 (823)
T 3kg2_A          298 SRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP  359 (823)
T ss_dssp             CCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEECCCCCCCCCCCCCEEECCCCC
T ss_conf             56778787566777764419999998851641035661797989986654211023226763


No 17 
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=100.00  E-value=1e-35  Score=230.95  Aligned_cols=308  Identities=11%  Similarity=0.040  Sum_probs=225.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA   99 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~   99 (388)
                      |||+++|+||+++.+|+.+++|+++|++          |++|+|+++|++++|.++   +.+++.++++.+|+||.+|..
T Consensus         2 kIG~llPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~a---a~~~l~~~~v~~ViGp~~s~~   68 (325)
T 2h4a_A            2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQN   68 (325)
T ss_dssp             CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC----------CCCCEEEEEECCCCHHHH---HHHHHHHCCCCEEEECCCCCC
T ss_conf             1999938988417889999999998556----------998459997089989999---999999779969998257752


Q ss_pred             HHHHHH-HHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf             778889-99864977864267761015777653489734765788899999997-1893899985487432234789999
Q T0528           100 ALADLP-VAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKE  177 (388)
Q Consensus       100 ~~~~~~-~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~  177 (388)
                      +..+.+ ..+..++|++.++++...    ...+++|+..++...++..++.++. ++++++++++++++||+.+...+++
T Consensus        69 ~~~~~~~~~~~~~v~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vaii~~~~~~g~~~~~~~~~  144 (325)
T 2h4a_A           69 LDVILADPAQIQGMDVLALNATPNS----RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV  144 (325)
T ss_dssp             HHHHHHCGGGGTTCEEEESCCCSSC----CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEECCCCCCC----CCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             1345578887267069954656654----467860222069499999999999971882899992686488999999999


Q ss_pred             HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHH--HH
Q ss_conf             9986398599841017543312899999998433576458999605207899999997153003621123553012--22
Q T0528           178 ALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILP--AL  255 (388)
Q Consensus       178 ~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  255 (388)
                      .+++.|++++....++..  +......+++..   .++.+++..........+.++...+................  ..
T Consensus       145 ~~~~~G~~v~~~~~~~~~--~~~~~~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (325)
T 2h4a_A          145 RWQQLAGTDANIRYYNLP--ADVTYFVQENNS---NTTALYAVASPTELAEXKGYLTNIVPNLAIYASSRASASATNTNT  219 (325)
T ss_dssp             HHHHHHSSCCEEEEESST--THHHHHHHHSTT---CCCEEEECCCHHHHHHHHHHHTTTCTTCEEEECGGGCCHHHHTCH
T ss_pred             HHHHCCCEEEEEEECCCC--CHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf             999869969899967996--256788876414---998799805727777899999860667866752144457510144


Q ss_pred             HCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             11010055257402257877898999999999997088987568999999999999999618998899999996187555
Q T0528           256 AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDT  335 (388)
Q Consensus       256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~g  335 (388)
                      ......+|..+....+...+.++..++|.++|+..++..+  +.+.+||+++++.... +         .+++++..|+|
T Consensus       220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~gyDa~~l~~~~~-~---------~~~~~~~~~~G  287 (325)
T 2h4a_A          220 DFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQLMR--LYAMGADAWLLINQFN-E---------LRQVPGYRLSG  287 (325)
T ss_dssp             HHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCHHHHH--HHHHHHHHHHHHHTHH-H---------HHHSTTCCEEE
T ss_pred             CHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHH-H---------HCCCCCCCCCC
T ss_conf             4377648959987645679994899999998885469983--1999999999999999-8---------52568998154


Q ss_pred             CEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             324789724788502437999998568
Q T0528           336 PKGKMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       336 ~~G~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                      ++|+++||+ +|...+.+.++|++.+.
T Consensus       288 ~tG~~~fd~-~G~~~r~~~~~q~~~G~  313 (325)
T 2h4a_A          288 LTGILSADT-NCNVERDMTWYQYQDGA  313 (325)
T ss_dssp             TTEEEEECT-TCBEEEECEEEEEETTE
T ss_pred             CEEEEEECC-CCCEEECCEEEEEECCE
T ss_conf             728899999-99873352699998998


No 18 
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00  E-value=1.1e-32  Score=212.81  Aligned_cols=343  Identities=14%  Similarity=0.077  Sum_probs=246.3

Q ss_pred             CCEEEEEEECCCCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHC-
Q ss_conf             835899982466770----------567899999999999999855797698589999972788989999999999864-
Q T0528            17 DDLKIALIYGKTGPL----------EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQD-   85 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~----------a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~-   85 (388)
                      -.|.||.++|+....          ...|.....++++|+|+||+++++|+|++|.++++|+.+++..+++.+.+++.. 
T Consensus        13 GDi~IGglFp~h~~~~~~~~c~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~   92 (555)
T 2e4u_A           13 GDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRAS   92 (555)
T ss_dssp             CSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf             99899999988617888766655242232799999999999997899989997899999850798489999999998602


Q ss_pred             -----------------------CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf             -----------------------885121147751337788899986497786426776101577765348973476578
Q T0528            86 -----------------------DGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQ  142 (388)
Q Consensus        86 -----------------------~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~  142 (388)
                                             .+|.+|+||.+|..+.++++++...++|+|+++++++.++++..+|++||+.|++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~avIGp~~S~~s~~va~~~~~~~ip~Is~~ats~~lsd~~~yp~f~Rt~psd~~  172 (555)
T 2e4u_A           93 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY  172 (555)
T ss_dssp             C--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEECCCHHH
T ss_conf             54555534235543211012577746999998756999999999987488411576067121356778756998686788


Q ss_pred             HHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--HHHHHHHHHHHCCCCCCEEEE
Q ss_conf             8899999997-1893899985487432234789999998639859984101754331--289999999843357645899
Q T0528           143 DAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTD--FTAVGQRLFDALKDKPGKKII  219 (388)
Q Consensus       143 ~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d--~~~~~~~i~~~~~d~~~~~~~  219 (388)
                      ++.+++..+. .+|++|++|+.++++|+.....+++.+++.|+.|+..+.++.+..+  +...+.++.  ......++++
T Consensus       173 ~~~a~~~ll~~f~W~~V~ii~~~~~~g~~~~~~~~~~~~~~~i~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~a~vIv~  250 (555)
T 2e4u_A          173 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELL--QKPNARVVVL  250 (555)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHH--TCTTCCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH--HHCCCCEEEE
T ss_conf             89999999998399589999952736889999999889866854999999079885777777788887--6247858999


Q ss_pred             EEECCHHHHHHHHHHHHCCHHCCCCCCCCC-CHHHHHHCHHHCCCEEEEECCCC---------------CCCCCHHHHHH
Q ss_conf             960520789999999715300362112355-30122211010055257402257---------------87789899999
Q T0528           220 WVIWAGGGDPLTKLQDMDPKRYGIELSTGG-NILPALAAYKRLPGMEGATYYYY---------------DIPKNPINEWL  283 (388)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~~~f  283 (388)
                      .........++.++...+.....+...... .............|.........               ..+.++..++|
T Consensus       251 ~~~~~~~~~ll~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~i~~f~~~~~~l~~~~~~~n~~~~~~  330 (555)
T 2e4u_A          251 FMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDF  330 (555)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCCEEEECTTTTTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHH
T ss_pred             ECCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             64779999999999984997648999641455400103433255069974124205215657542361336777689999


Q ss_pred             HHHHHH--------------------HHCCCCCHHHHHHHHHHHHHHHHHHHH---------C------CCCH-HHHHHH
Q ss_conf             999999--------------------708898756899999999999999961---------8------9988-999999
Q T0528           284 VTEHQK--------------------RFNAPPDFFTAGGFSAAMAVVTAVQKA---------K------STDT-EKLIAA  327 (388)
Q Consensus       284 ~~~~~~--------------------~~g~~p~~~a~~~Yda~~~~~~Ai~~a---------g------~~~~-~~v~~a  327 (388)
                      .+.+..                    ..+..++.++.+.|||++++|.||.+.         +      ..++ +.+...
T Consensus       331 w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (555)
T 2e4u_A          331 WEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEY  410 (555)
T ss_dssp             HHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99972775456767543456545556566543147999999999999999998761066665445554346889999999


Q ss_pred             HHCCC-------CCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             96187-------555324789724788502437999998568
Q T0528           328 MEGME-------FDTPKGKMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       328 L~~~~-------~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                      |+.+.       |+|.+|+++||.+ ++....+.|++++..+
T Consensus       411 l~~v~~~~~~~~~~g~~g~V~Fd~n-Gd~~~~Y~I~n~q~~~  451 (555)
T 2e4u_A          411 LLKIQFTAPFNPNKGADSIVKFDTF-GDGMGRYNVFNLQQTG  451 (555)
T ss_dssp             TTCEEECCSSSCCSSSCCEEECCTT-SCCCCCEEEEEEECTT
T ss_pred             HHHHEEECCCCCCCCCCCEEEECCC-CCCCCEEEEEEEEECC
T ss_conf             9985470432442688855996757-8764307899999779


No 19 
>3jpw_A Glutamate [NMDA] receptor subunit epsilon-2; amino terminal domain, zinc, phenylethanolamine, calcium, cell junction, cell membrane; HET: NAG; 2.80A {Rattus norvegicus} PDB: 3jpy_A*
Probab=99.94  E-value=1.5e-25  Score=169.94  Aligned_cols=308  Identities=10%  Similarity=0.064  Sum_probs=213.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS   97 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S   97 (388)
                      .|+||++++  |..      ...+++++++++|.....+. .++..+..| .+||..++..+.+|+..++|.+|+|+..|
T Consensus         3 ~v~i~~~~~--~~~------~~~~~~~a~~~~n~~~~~l~-~~~~~~~~~-~~~p~~~~~~~c~l~~~~~v~~ivg~~~s   72 (363)
T 3jpw_A            3 SIGIAVILV--GTS------DEVAIKDAHEKDDFHHLSVV-PRVELVAMN-ETDPKSIITRICDLMSDRKIQGVVFADDT   72 (363)
T ss_dssp             CCEEEEEEE--SCS------SCCCCCCGGGCCCSTTCSSC-CEEEEEEES-CCSHHHHHHHHHHHHHHSCCSCEEEEECS
T ss_pred             EEEEEEEEC--CCH------HHHHHHHHHHHHHCCCCCCC-CCEEEEEEC-CCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             278999977--855------89999998634431577324-522699952-68979999999998740896799946998


Q ss_pred             H---HHHHHHHHHHHCCCEEEECCCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHH
Q ss_conf             3---3778889998649778642677610-15777653489734765788899999997-18938999854874322347
Q T0528            98 A---AALADLPVAEENKKILIVEPAVADQ-ITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGV  172 (388)
Q Consensus        98 ~---~~~~~~~~~~~~~vp~i~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~  172 (388)
                      .   .+..+..++...+||+|++.++++. ++....++++||+.|++..++.+++..+. .+|+++++|++++++++...
T Consensus        73 ~~~~~a~~v~~i~~~~~IP~is~~~~~~~~~~~~~~~~~f~r~~ps~~~q~~a~~~ll~~~~W~~v~vi~~~~~~~~~~~  152 (363)
T 3jpw_A           73 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFV  152 (363)
T ss_dssp             CCTHHHHHHHHHHHHHTCEEEEEEGGGGSCCTTCCTTCEEEESSCCHHHHHHHHHHHHHTTTCCEEEEEECSSTTHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
T ss_conf             60788999999986379888983688865345666787199981898999999999998667729999997581278899


Q ss_pred             HHHHHHHHHCCCEEEEEEECCC--CCC-CHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCC
Q ss_conf             8999999863985998410175--433-1289999999843357645899960520789999999715300362112355
Q T0528           173 AAFKEALAKTGATLATEEYVPT--TTT-DFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGG  249 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~--~~~-d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (388)
                      ..+++.+++.|+++.....++.  +.. ++..+..+++..   .+.++++.........++.++.+.+.......+....
T Consensus       153 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~i~~~---~~~vivl~~~~~~a~~il~~a~~~gm~~~~~~wi~t~  229 (363)
T 3jpw_A          153 NKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS  229 (363)
T ss_dssp             HHHHHHHHTCSSCCEEEEEEECCCCC----CCSHHHHTTC---CCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECH
T ss_pred             HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             9999999975974899999716888542589999999737---9989999666899888899999828778877999937


Q ss_pred             CHHHH--HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf             30122--21101005525740225787789899999999999708898756899999999999999961-----------
Q T0528           250 NILPA--LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKA-----------  316 (388)
Q Consensus       250 ~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~a-----------  316 (388)
                      .....  ........|......   ..                   ....+....||++.+++.|+..-           
T Consensus       230 ~~~~~~~~~~~~~~~g~~~~~~---~~-------------------~~~~~~~~~~dav~~~a~a~~~~~~~~~~~~~~~  287 (363)
T 3jpw_A          230 LVAGDTDTVPSEFPTGLISVSY---DE-------------------WDYGLPARVRDGIAIITTAASDMLSEHSFIPEPK  287 (363)
T ss_dssp             HHHCSTTCCCTTSCSSEEEEEC---SS-------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             CCCCCCCCCCHHCCCCEEEECC---CC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             3203554331002001230034---56-------------------3134444467689999999999864300266300


Q ss_pred             ---------CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             ---------8998899999996187555324789724788502437999998568
Q T0528           317 ---------KSTDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP  362 (388)
Q Consensus       317 ---------g~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~  362 (388)
                               ...+++.+.++|++.+|+|  |++.||++++.....+.|++++.++
T Consensus       288 ~~~~~~~~~~~~~g~~l~~~l~~~~f~G--g~v~Fd~~Gdr~~~~~~I~~l~~~~  340 (363)
T 3jpw_A          288 SSCYNTHEKRIYQSNMLNRYLINVTFEG--RDLSFSEDGYQMHPKLVIILLNKER  340 (363)
T ss_dssp             CCSSSCCCCCHHHHHHHHHHHTTCEETT--EECCBCTTSBBSSCCEEEEEECTTS
T ss_pred             CCHHHCCCCCCCCHHHHHHHHHCCEEEC--CEEEECCCCCCCCCEEEEEEEECCC
T ss_conf             5643456899888999999970054717--1799899997568668999994788


No 20 
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=99.18  E-value=7.1e-09  Score=69.79  Aligned_cols=170  Identities=13%  Similarity=0.116  Sum_probs=108.9

Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             03568358999824667705678999999999999998557976985899999727889899999999998648851211
Q T0528            13 VHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI   92 (388)
Q Consensus        13 ~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~   92 (388)
                      +.++++.|||++..++.|.  + .++.+|++   +.+++.|+ ..|++|++++.|+++|++...+.+++|+.+ ++++|+
T Consensus         3 ~~~~~~~ki~i~~~~~~p~--~-~~~~~g~~---~~l~~~G~-~~g~~v~~~~~da~~d~~~~~~~~~~l~~~-~~d~Ii   74 (302)
T 2qh8_A            3 AIMAKTAKVAVSQIVEHPA--L-DATRQGLL---DGLKAKGY-EEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLV   74 (302)
T ss_dssp             ----CCEEEEEEESSCCHH--H-HHHHHHHH---HHHHHTTC-CBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEE
T ss_pred             HHHCCCCEEEEEEEECCHH--H-HHHHHHHH---HHHHHCCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf             2115773699998507867--9-99999999---99996097-579857999945888999999999998735-987899


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCCC-CCCCCC--CCCCEEEEEC-CCHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Q ss_conf             47751337788899986497786426776-101577--7653489734-7657888999999971893899985487432
Q T0528            93 GTSSSAAALADLPVAEENKKILIVEPAVA-DQITGE--KWNRYIFRTG-RNSSQDAISNAVAIGKQGVTIATLAQDYAFG  168 (388)
Q Consensus        93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g  168 (388)
                      .. .+.....+........++.+...... ......  ...+++.... .........+...+..+.+++++++.++..+
T Consensus        75 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgv~~~~~~~~~l~~~~~l~p~~k~v~vi~~~~~~~  153 (302)
T 2qh8_A           75 GI-ATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEAN  153 (302)
T ss_dssp             EE-SHHHHHHHHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHH
T ss_pred             EC-CCHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf             83-98799999863134785267532640201221234789708999874109999999998588997899995797243


Q ss_pred             H-HHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             2-3478999999863985998410
Q T0528           169 R-DGVAAFKEALAKTGATLATEEY  191 (388)
Q Consensus       169 ~-~~~~~~~~~~~~~g~~vv~~~~  191 (388)
                      . .....+++.++..|.+++....
T Consensus       154 ~~~~~~~~~~~~~~~g~~vv~~~~  177 (302)
T 2qh8_A          154 AVSLMELLKLSAAKHGIKLVEATA  177 (302)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             799999999999874987999715


No 21 
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=99.08  E-value=4.7e-07  Score=58.85  Aligned_cols=207  Identities=11%  Similarity=0.043  Sum_probs=123.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf             358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS   96 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~   96 (388)
                      |+|||++.|-+  ...+-..+..|++-+.+..   |       +++++.|++.+++.-.+.+++|+.+ ++++|+ .|..
T Consensus         2 P~~Ig~~~~~~--~~~~~~~~~~~~~~~a~~~---G-------~~~~~~~~~~~~~~q~~~i~~li~~-~vD~IIv~~~~   68 (306)
T 2vk2_A            2 PLTVGFSQVGS--ESGWRAAETNVAKSEAEKR---G-------ITLKIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVV   68 (306)
T ss_dssp             CCEEEEEECCC--CSHHHHHHHHHHHHHHHHH---T-------CEEEEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSS
T ss_pred             CEEEEEEECCC--CCHHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             84999996899--8999999999999999985---9-------9899995899999999999999975-99999983256


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH----HCCCEEEEEECC--CHHHHH
Q ss_conf             13377888999864977864267761015777653489734765788899999997----189389998548--743223
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG----KQGVTIATLAQD--YAFGRD  170 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~i~~d--~~~g~~  170 (388)
                      +.........+.+.++|++.......   ..+...++.....+....+...+.++.    .+..++.++...  ......
T Consensus        69 ~~~~~~~~~~a~~~giPvv~~d~~~~---~~~~~~~~~~v~~~~~~~g~~~a~~~~~~~~~~~~~v~~~~g~~~~~~~~~  145 (306)
T 2vk2_A           69 ATGWEPVLKEAKDAEIPVFLLDRSID---VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAID  145 (306)
T ss_dssp             SSSCHHHHHHHHHTTCCEEEESSCCC---CSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             54116889999861997577445445---555666520584264266677778877532556654332224667643778


Q ss_pred             HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHCCHH
Q ss_conf             47899999986398-599841017543312899999998433576458999605207-89999999715300
Q T0528           171 GVAAFKEALAKTGA-TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMDPKR  240 (388)
Q Consensus       171 ~~~~~~~~~~~~g~-~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  240 (388)
                      -...+++.+++.+. ++...........+.......+.+.....|....+....... .-.+.++.+.+...
T Consensus       146 R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~i~ai~~~~d~~a~g~~~al~~~G~~~  217 (306)
T 2vk2_A          146 RKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKP  217 (306)
T ss_dssp             HHHHHHHHTTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999750365510232033101589999999886512476432001478499999999999860148


No 22 
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.71  E-value=1.1e-05  Score=50.61  Aligned_cols=210  Identities=11%  Similarity=-0.012  Sum_probs=112.1

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512-11477
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTS   95 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~   95 (388)
                      |++|||+++|-..  ..+-..+..|++-+.++.        |.  +++... ..|+..-.+..+.|+.+ ++++ |+.+.
T Consensus         1 e~~~Ig~i~~~~~--~~~~~~~~~g~~~~a~~~--------g~--~~i~~~-~~d~~~q~~~i~~li~~-~~dgiIi~~~   66 (306)
T 8abp_A            1 ENLKLGFLVKQPE--EPWFQTEWKFADKAGKDL--------GF--EVIKIA-VPDGEKTLNAIDSLAAS-GAKGFVICTP   66 (306)
T ss_dssp             -CEEEEEEESCTT--SHHHHHHHHHHHHHHHHH--------TE--EEEEEE-CCSHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred             CCEEEEEEECCCC--CHHHHHHHHHHHHHHHHC--------CC--EEEEEC-CCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             9739999979998--989999999999999972--------99--999987-99999999999999975-9899999678


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH----HHHHHHHHHHCC----CEEEEEEC--CC
Q ss_conf             513377888999864977864267761015777653489734765788----899999997189----38999854--87
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQD----AISNAVAIGKQG----VTIATLAQ--DY  165 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~v~~i~~--d~  165 (388)
                      .+.........+.+.++|++.............. ........+....    +..+...+.+++    .++.++..  +.
T Consensus        67 ~~~~~~~~~~~a~~~gIPvv~~~~~~~~~~~~~~-~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (306)
T 8abp_A           67 DPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM-DTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL  145 (306)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBC-TTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             7523599999999759988999625544556666-776466204999999999999998433057665269998079877


Q ss_pred             HHHHHHHHHHHHHHHHCCCE---EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf             43223478999999863985---99841017543312899999998433576458999605207899999997153003
Q T0528           166 AFGRDGVAAFKEALAKTGAT---LATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY  241 (388)
Q Consensus       166 ~~g~~~~~~~~~~~~~~g~~---vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                      ...+.-...+++.+++.+..   ++....-......-......+....++....+++...-......+.++.+.+....
T Consensus       146 ~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~a~g~i~al~~~G~~~~  224 (306)
T 8abp_A          146 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA  224 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGG
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             0899999999999997599954330101453035679999999997489998237447663999999999997699999


No 23 
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=98.68  E-value=1.3e-05  Score=50.15  Aligned_cols=201  Identities=14%  Similarity=0.068  Sum_probs=110.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf             8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA   98 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~   98 (388)
                      |||++.|...  ..+-..+..|++-+.++.        |.++.+...++..++.+-.+..++++.+.++++|+ .|..+.
T Consensus         2 kI~~v~~~~~--~~f~~~~~~G~~~~a~~~--------g~~~~~~~~~~~~d~~~q~~~l~~~i~~~~~D~iii~~~~~~   71 (276)
T 3ksm_A            2 KLLLVLKGDS--NAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE   71 (276)
T ss_dssp             EEEEECSCSS--STHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT
T ss_pred             EEEEEECCCC--CHHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf             8999959999--999999999999999983--------998999958998799999999999997089989999379857


Q ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-----CCCEEEEEECC--CHHHHHH
Q ss_conf             3778889998649778642677610157776534897347657888999999971-----89389998548--7432234
Q T0528            99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-----QGVTIATLAQD--YAFGRDG  171 (388)
Q Consensus        99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~d--~~~g~~~  171 (388)
                      ........+.+.++|+++.....   ....   .......+....+...+.++..     +.++++++..+  .......
T Consensus        72 ~~~~~i~~~~~~gIPvv~~~~~~---~~~~---~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~~r  145 (276)
T 3ksm_A           72 DLTPSVAQYRARNIPVLVVDSDL---AGDA---HQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQR  145 (276)
T ss_dssp             TTHHHHHHHHHTTCCEEEESSCC---SSSC---SSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEECCCCC---CCCC---CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf             77999999997799499736644---6787---64089844146799999999987322798479995376776407789


Q ss_pred             HHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             78999999863-98599841017543312899999998433576458999605207899999997153
Q T0528           172 VAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       172 ~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      ...+++.+++. +.+++...........-...+.++....++ +. .++..........+.++.+.+.
T Consensus       146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~g~~~al~~~g~  211 (276)
T 3ksm_A          146 EQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPT-ID-GLFTPNESTTIGALVAIRQSGM  211 (276)
T ss_dssp             HHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSC-CC-EEECCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCC-CC-EEEECCHHHHHHHHHHHHHCCC
T ss_conf             877999998679864202110102258899998876414887-63-5662571999999999997599


No 24 
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.64  E-value=1.7e-05  Score=49.45  Aligned_cols=207  Identities=11%  Similarity=0.040  Sum_probs=113.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf             358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS   96 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~   96 (388)
                      .+|||+++|-.. . .+-..+..|++-..+   +.+|      +++.+.|.+.|+..-.+.+++|+.+ ++++|+ .|..
T Consensus         2 ~~kIgv~~~~~~-~-~f~~~~~~gi~~~a~---~~~g------~~l~~~~~~~d~~~q~~~le~li~~-~~D~iiv~~~d   69 (309)
T 2fvy_A            2 DTRIGVTIYKYD-D-NFMSVVRKAIEQDAK---AAPD------VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVD   69 (309)
T ss_dssp             CEEEEEEESCTT-S-HHHHHHHHHHHHHHH---TCTT------EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSS
T ss_pred             CCEEEEEECCCC-C-HHHHHHHHHHHHHHH---HCCC------EEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf             988999979997-9-999999999999998---7699------1899973999999999999999976-99999976876


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-------------CCCEEEEEEC
Q ss_conf             133778889998649778642677610157776534897347657888999999971-------------8938999854
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-------------QGVTIATLAQ  163 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~  163 (388)
                      +.........+.+.++|++.......... ............+..........++.+             +..+++++.-
T Consensus        70 ~~~~~~~l~~a~~~gIpvV~~d~~~~~~~-~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~~g  148 (309)
T 2fvy_A           70 PAAAGTVIEKARGQNVPVVFFNKEPSRKA-LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG  148 (309)
T ss_dssp             GGGHHHHHHHHHTTTCCEEEESSCCCHHH-HHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEEC
T ss_pred             CHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEC
T ss_conf             03039999999986992999668766321-24577634997460898999999999975521340010589738999968


Q ss_pred             C--CHHHHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf             8--74322347899999986398599841017--54331289999999843357645899960520789999999715
Q T0528           164 D--YAFGRDGVAAFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD  237 (388)
Q Consensus       164 d--~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                      +  ....+.-...+...++..+.++.......  .+...-...++.+...........++...-....-.+.++.+.+
T Consensus       149 ~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~i~~~~d~~a~g~~~al~~~g  226 (309)
T 2fvy_A          149 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN  226 (309)
T ss_dssp             STTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf             887721889998899999851777503578731211056899999998557799973899588578899999999679


No 25 
>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn}
Probab=98.62  E-value=2e-05  Score=49.08  Aligned_cols=207  Identities=11%  Similarity=0.026  Sum_probs=123.4

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC---C
Q ss_conf             6835899982466770567899999999999999855797698589999972788989999999999864885121---1
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA---I   92 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i---~   92 (388)
                      .-|.+||++++- -.. .+-..+.+|++-+.++.   |       +++++.|++.|+.+..+.+++++.+. ++++   +
T Consensus         3 ~~~~~i~~~~~~-l~n-pf~~~~~~g~~~~a~~~---g-------~~~~~~~~~~d~~~q~~~~~~~i~~~-~d~iii~~   69 (332)
T 2rjo_A            3 LGQTTLACSFRS-LTN-PYYTAFNKGAQSFAKSV---G-------LPYVPLTTEGSSEKGIADIRALLQKT-GGNLVLNV   69 (332)
T ss_dssp             CCCCEEEEEESC-TTS-HHHHHHHHHHHHHHHHH---T-------CCEEEEECTTCHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CCCCEEEEEECC-CCC-HHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf             899689999588-888-89999999999999971---9-------98999958999999999999999659-99899982


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEEC--CCH
Q ss_conf             477513377888999864977864267761015777-6534897347657888999999971---8938999854--874
Q T0528            93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEK-WNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQ--DYA  166 (388)
Q Consensus        93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~--d~~  166 (388)
                      .|..+.......+.+.+.++|++............. ...+......+....+...+.++.+   +..+++++.-  ++.
T Consensus        70 ~p~d~~~~~~~i~~a~~~gIpVV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~G~~~a~~l~~~~~~~~~v~~i~g~~~~~  149 (332)
T 2rjo_A           70 DPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNV  149 (332)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             77645767999999998699299963666654333457772158961789999999999998659963899547886542


Q ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHH-CCCCCCEEEEEEECCH-HHHHHHHHHHHCC
Q ss_conf             3223478999999863-985998410175433128999999984-3357645899960520-7899999997153
Q T0528           167 FGRDGVAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDA-LKDKPGKKIIWVIWAG-GGDPLTKLQDMDP  238 (388)
Q Consensus       167 ~g~~~~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~-~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~  238 (388)
                      ....-...|+..+++. +.+++....-..+...-...+..+... .+   ..-.+...... ..-.+..+.+.+.
T Consensus       150 ~~~~R~~G~~~~l~~~~~~~i~~~~~~~~~~~~a~~~~~~~l~~~~p---~i~~I~~~~d~~a~ga~~al~~~G~  221 (332)
T 2rjo_A          150 PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNS---KIKGVWAANDDMALGAIEALRAEGL  221 (332)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGG---GEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf             89999999999998789985888862342438999999998850699---7728996796899999999997699


No 26 
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.51  E-value=4e-05  Score=47.32  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=114.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf             589998246677056789999999999999985579769858999997278898999999999986488512-1147751
Q T0528            19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSSS   97 (388)
Q Consensus        19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~S   97 (388)
                      |+||++.+.+  .. +-..+.+|++.+.++.        |.++++ ..++..|+.+-.+.+++++.+ ++++ |+.|..+
T Consensus         2 ~tigvi~~~~--np-f~~~~~~G~~~aa~~~--------g~~v~~-~~~~~~d~~~q~~~i~~~i~~-~~DgIii~~~~~   68 (313)
T 2h3h_A            2 LTIGVIGKSV--HP-YWSQVEQGVKAAGKAL--------GVDTKF-FVPQKEDINAQLQMLESFIAE-GVNGIAIAPSDP   68 (313)
T ss_dssp             CEEEEECSCS--SH-HHHHHHHHHHHHHHHH--------TCEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSST
T ss_pred             EEEEEECCCC--CH-HHHHHHHHHHHHHHHH--------CCEEEE-EECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             6999968999--98-9999999999999980--------997999-979999999999999999976-999999977622


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEE--CCCHHHHHHH
Q ss_conf             33778889998649778642677610157776534897347657888999999971---893899985--4874322347
Q T0528            98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLA--QDYAFGRDGV  172 (388)
Q Consensus        98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~--~d~~~g~~~~  172 (388)
                      .........+.+.++|++......+   ....  ..+ ...+....+...+.++.+   ....+.++.  .+....+.-.
T Consensus        69 ~~~~~~l~~a~~~gipvv~~d~~~~---~~~~--~~~-v~~d~~~~g~~a~~~~~~~~~~~~~~~i~~g~~~~~~~~~R~  142 (313)
T 2h3h_A           69 TAVIPTIKKALEMGIPVVTLDTDSP---DSGR--YVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRI  142 (313)
T ss_dssp             TTTHHHHHHHHHTTCCEEEESSCCT---TSCC--SCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEEECCCC---CCCC--EEE-EECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf             1125999999975998699824568---7762--249-925729999999999999744336413403777875599999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             899999986398599841017543312899999998433576458999605207899999997153
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      ..+++.+++.+.++.....-..........+.++.+..++.  ..++........-.+.++++.+.
T Consensus       143 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~I~~~~d~~a~ga~~al~~ag~  206 (313)
T 2h3h_A          143 QGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDL--DAFFGVYAYNGPAQALVVKNAGK  206 (313)
T ss_dssp             HHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTC--CEEEECSTTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCC--CEEEECCCHHHHHHHHHHHHCCC
T ss_conf             99999863168611002267677777876899999629897--09997683689999999997799


No 27 
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.46  E-value=5.4e-05  Score=46.50  Aligned_cols=207  Identities=14%  Similarity=0.113  Sum_probs=114.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS   97 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S   97 (388)
                      ..|||++...++|  .+ .++..|++-.+++   . | +.++.+++++.|.++|++...+.+++|+.+ ++++|+. ..+
T Consensus         2 ~~~Igv~~~~~~p--~~-d~~~~Gi~~~l~~---~-G-~~~~~v~i~~~~a~~d~~~~~~~~~~l~~~-~~d~ii~-~~~   71 (295)
T 3lft_A            2 NAKIGVLQFVSHP--SL-DLIYKGIQDGLAE---E-G-YKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVG-IAT   71 (295)
T ss_dssp             CEEEEEEECSCCH--HH-HHHHHHHHHHHHH---T-T-CCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEE-ESH
T ss_pred             CCEEEEEECCCCH--HH-HHHHHHHHHHHHH---C-C-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEE-CCC
T ss_conf             9769999787773--89-9999999999997---5-9-987607999967988999999999999746-9867984-484


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCC-CCCCC--CCCCEEEE-ECCCHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHH
Q ss_conf             3377888999864977864267761-01577--76534897-347657888999999971893899985487-4322347
Q T0528            98 AAALADLPVAEENKKILIVEPAVAD-QITGE--KWNRYIFR-TGRNSSQDAISNAVAIGKQGVTIATLAQDY-AFGRDGV  172 (388)
Q Consensus        98 ~~~~~~~~~~~~~~vp~i~~~a~~~-~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~g~~~~  172 (388)
                      ..+..+........++++....... .....  ....++.. ...............+....+++++++.+. .......
T Consensus        72 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~  151 (295)
T 3lft_A           72 PAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV  151 (295)
T ss_dssp             HHHHHHHHHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
T ss_conf             78999999754137605898455212331100368983799985289999999999748788646896697531299999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHC
Q ss_conf             899999986398599841017543312899999998433576458999605207899999997153003
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRY  241 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                      ..+++.+...+.+++.....  ...+   ..+.+....+ .++.++ .............+...+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~l~~~~~-~~dai~-~~~~~~~~~~~~al~~~~~~~~  213 (295)
T 3lft_A          152 EEFKAYAEKAGLTVETFAVP--STNE---IASTVTVMTS-KVDAIW-VPIDNTIASGFPTVVSSNQSSK  213 (295)
T ss_dssp             HHHHHHHHHTTCEEEEEEES--SGGG---HHHHHHHHTT-TCSEEE-ECSCHHHHHTHHHHHHHTTTTC
T ss_pred             HHHHHHHHHCCCEEEEECCC--CHHH---HHHHHHHCCC-CCEEEE-ECCCHHHHHHHHHHHHHHCCCC
T ss_conf             99998666417568750466--6799---9999983678-861999-7387068889999998520247


No 28 
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.30  E-value=0.00013  Score=44.15  Aligned_cols=189  Identities=12%  Similarity=0.109  Sum_probs=103.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-C
Q ss_conf             568358999824667705678999999999999998557976985899999727889899999999998648851211-4
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-G   93 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G   93 (388)
                      ...+++||+++|-. ..+.+-..+..|++..+++.   |  + ...+.....++..|+..-.+..++++.+. +++++ .
T Consensus        40 ~~k~~~I~vi~p~~-~~s~y~~~~~~g~~~~~~~~---g--~-~~~i~~~~~~~~~d~~~q~~~i~~~i~~~-~DgiIi~  111 (342)
T 1jx6_A           40 TQRPIKISVVYPGQ-QVSDYWVRNIASFEKRLYKL---N--I-NYQLNQVFTRPNADIKQQSLSLMEALKSK-SDYLIFT  111 (342)
T ss_dssp             CSSCEEEEEEECCC-SSCCHHHHHHHHHHHHHHHT---T--C-CEEEEEEECCTTCCHHHHHHHHHHHHHTT-CSEEEEC
T ss_pred             CCCCCEEEEEECCC-CCCHHHHHHHHHHHHHHHHC---C--C-CEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf             28996799997999-87889999999999999976---9--9-47999985489869999999999999739-9989993


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHH
Q ss_conf             775133778889998649778642677610157776534897347657888999999971---893899985487-4322
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQDY-AFGR  169 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~d~-~~g~  169 (388)
                      +..+.....+..+.....+|++...- ............+.....+....+...+.++..   +.++++++.... ..+.
T Consensus       112 ~~~~~~~~~i~~~~~~~~~~Vv~~~~-~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~~~~~i~~i~g~~~~~~~  190 (342)
T 1jx6_A          112 LDTTRHRKFVEHVLDSTNTKLILQNI-TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISD  190 (342)
T ss_dssp             CSSSTTHHHHHHHHHHCSCEEEEETC-CSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEEECC-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf             78622199999999809985998057-67642123578864996699999999999999846997479981599985699


Q ss_pred             HHHHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             34789999998639-85998410175433128999999984335
Q T0528           170 DGVAAFKEALAKTG-ATLATEEYVPTTTTDFTAVGQRLFDALKD  212 (388)
Q Consensus       170 ~~~~~~~~~~~~~g-~~vv~~~~~~~~~~d~~~~~~~i~~~~~d  212 (388)
                      .-...|.+++++.+ .+++..........+-...+.++....++
T Consensus       191 ~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  234 (342)
T 1jx6_A          191 VRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPD  234 (342)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEECCCSSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999999998632788515983799999999999997542566


No 29 
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.30  E-value=0.00014  Score=44.08  Aligned_cols=198  Identities=14%  Similarity=0.121  Sum_probs=112.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA   99 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~   99 (388)
                      +||+++|-..  ..+-..+.+|++-+.++.   |       +++++.++..++..-.+..++|+......+++.+.....
T Consensus         3 tIgvvvp~~~--~~f~~~i~~gi~~~~~~~---g-------~~~~~~~~~~d~~~~~~~l~~l~~~~~~~ii~~~~~~~~   70 (283)
T 2ioy_A            3 TIGLVISTLN--NPFFVTLKNGAEEKAKEL---G-------YKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDA   70 (283)
T ss_dssp             EEEEEESCSS--SHHHHHHHHHHHHHHHHH---T-------CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTT
T ss_pred             EEEEECCCCC--CHHHHHHHHHHHHHHHHC---C-------CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             9999857898--989999999999999985---9-------999999489998999999999996198735304521122


Q ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEEC--CCHHHHHHHHH
Q ss_conf             778889998649778642677610157776534897347657888999999971---8938999854--87432234789
Q T0528           100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQ--DYAFGRDGVAA  174 (388)
Q Consensus       100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~--d~~~g~~~~~~  174 (388)
                      .......+.+.++|.+.......   ...   .+.....+....+...+.++.+   +.++++++..  +......-...
T Consensus        71 ~~~~~~~~~~~~~~~v~~~~~~~---~~~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~g  144 (283)
T 2ioy_A           71 VVTAIKEANSKNIPVITIDRSAN---GGD---VVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKG  144 (283)
T ss_dssp             THHHHHHHHHTTCCEEEESSCCS---SSC---CSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEECCCC---CCC---CCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             12778887742795699815788---777---542895089999999999999862899879999799998699999999


Q ss_pred             HHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf             9999986398-59984101754331289999999843357645899960520789999999715
Q T0528           175 FKEALAKTGA-TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD  237 (388)
Q Consensus       175 ~~~~~~~~g~-~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                      |++++++.+. +++..........+-...+.++.+..++ +. .++...-..+...+..+.+.+
T Consensus       145 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~-ai~~~~d~~a~~~~~a~~~~g  206 (283)
T 2ioy_A          145 FDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPK-ID-AVFAQNDEMALGAIKAIEAAN  206 (283)
T ss_dssp             HHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSC-CC-EEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-CC-EEEECCHHHHHHHHHHHHHCC
T ss_conf             999998789981677752777889999999999964979-85-899667488899999999749


No 30 
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.15  E-value=0.00028  Score=42.22  Aligned_cols=201  Identities=10%  Similarity=0.052  Sum_probs=112.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT   94 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~   94 (388)
                      .+.-+||++.+-..  ..+.....+|++.+.++.        |  +++++.|++.|++.-.+.+++++.+ ++++|+ .|
T Consensus         3 ~~gk~Igvi~~~~~--~~f~~~~~~g~~~~a~~~--------G--~~~~~~~~~~d~~~q~~~i~~~i~~-~~dgiii~~   69 (291)
T 3l49_A            3 LEGKTIGITAIGTD--HDWDLKAYQAQIAEIERL--------G--GTAIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQL   69 (291)
T ss_dssp             CTTCEEEEEESCCS--SHHHHHHHHHHHHHHHHT--------T--CEEEEEECTTCHHHHHHHHHHHHHH-CCSEEEEES
T ss_pred             CCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHC--------C--CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             88999999958999--989999999999999973--------9--9999993899999999999999975-999999927


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HH--CCCEEEEEEC--CCHHHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-71--8938999854--874322
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GK--QGVTIATLAQ--DYAFGR  169 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~v~~i~~--d~~~g~  169 (388)
                      ..+.........+.+.++|++......+     ....   ....+....+...+.++ .+  +..+++++..  .....+
T Consensus        70 ~~~~~~~~~i~~~~~~gipvv~~~~~~~-----~~~~---~v~~d~~~~g~~~a~~l~~~~~~~~~v~~~~g~~~~~~~~  141 (291)
T 3l49_A           70 GNLDVLNPWLQKINDAGIPLFTVDTATP-----HAIN---NTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCK  141 (291)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEESCCCT-----TCSE---EEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEECCCCCC-----CCCC---EEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf             8403058999999986991996677678-----8788---7996359999999999999749997799992675552256


Q ss_pred             HHHHHHHHHHHHCC-CEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHC
Q ss_conf             34789999998639-85998410175433128---99999998433576458999605207-89999999715
Q T0528           170 DGVAAFKEALAKTG-ATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMD  237 (388)
Q Consensus       170 ~~~~~~~~~~~~~g-~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~  237 (388)
                      .-...|++.+++.+ .+++..........+..   .....+....+..++...+....... .-.+..+.+.+
T Consensus       142 ~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ai~~~~d~~a~g~~~al~~~g  214 (291)
T 3l49_A          142 IRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAG  214 (291)
T ss_dssp             HHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf             9999999999878998245335203478768999999999998612467675699678678999999999829


No 31 
>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg}
Probab=98.15  E-value=0.00029  Score=42.17  Aligned_cols=203  Identities=10%  Similarity=0.068  Sum_probs=111.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCCC
Q ss_conf             835899982466770567899999999999999855797698589999972788989999999999864885121-1477
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA-IGTS   95 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i-~G~~   95 (388)
                      .+.+|.++.-.......+-..+.+|++.+.++.        |.++.+...|+..|+.+-.+.++.++.. ++++| +.+.
T Consensus         4 k~~~i~~i~~v~d~sn~f~~~~~~G~~~~a~~~--------g~~v~~~~~~~~~d~~~q~~~i~~li~~-~~DgIIi~~~   74 (289)
T 3brs_A            4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAAA   74 (289)
T ss_dssp             -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECCS
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             871899998558999889999999999999974--------9989999689988999999999999975-9999999778


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCEEEEEEC--CCHHHHH
Q ss_conf             513377888999864977864267761015777653489734765788899999997---18938999854--8743223
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG---KQGVTIATLAQ--DYAFGRD  170 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~--d~~~g~~  170 (388)
                      ...........+...++|++.......   ...   .......+..........++.   .....++++..  +......
T Consensus        75 ~~~~~~~~~~~~~~~~ipvv~~d~~~~---~~~---~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~  148 (289)
T 3brs_A           75 DYEKTYDAAKEIKDAGIKLIVIDSGMK---QDI---ADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMD  148 (289)
T ss_dssp             CTTTTHHHHTTTGGGTCEEEEESSCCS---SCC---CSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCC---CCC---CCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf             621048999999867994899704568---777---64599717288999999999983568866999957876741678


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCH-HHHHHHHHHHHC
Q ss_conf             4789999998639859984101754331289999999843357645899960520-789999999715
Q T0528           171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAG-GGDPLTKLQDMD  237 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (388)
                      -...+++.+++.+.+....................+....++   .-.+...... +.-.+..+.+.+
T Consensus       149 R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ai~~~~d~~a~g~~~al~~~g  213 (289)
T 3brs_A          149 REEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPD---ISVMVGLNQYSATGAARAIKDMS  213 (289)
T ss_dssp             HHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTT---EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCEECCCCHHHHHHHHHHHHHCC
T ss_conf             999999999966997421002551143799999999723899---87522587599999999999779


No 32 
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=98.14  E-value=0.00029  Score=42.10  Aligned_cols=203  Identities=12%  Similarity=0.030  Sum_probs=112.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+=+||+++|.+-....+-.++..|++-+.++   .     |.  ++++.+...+++...+..+.|..+ ++++++-..
T Consensus        17 ~~s~~Igll~~~~~~~~~f~~~l~~gi~~~a~~---~-----g~--~l~~~~~~~~~~~~~~~i~~l~~~-~~dgiIi~~   85 (296)
T 3brq_A           17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE---K-----GR--QLLLADGKHSAEEERQAIQYLLDL-RCDAIMIYP   85 (296)
T ss_dssp             --CCEEEEEECGGGCC--CHHHHHHHHHHHHHH---T-----TC--EEEEECCTTSHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf             899979999588664686999999999999998---5-----99--999996899979999999999964-998899747


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-7189389998548--74322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~~  172 (388)
                      .........+.+...++|++.......   . ...+   ....+....+...+.++ .++.+++++|..+  ......-.
T Consensus        86 ~~~~~~~~~~~~~~~~~PvV~~~~~~~---~-~~~~---~v~~d~~~~~~~~~~~l~~~G~~~i~~l~g~~~~~~~~~R~  158 (296)
T 3brq_A           86 RFLSVDEIDDIIDAHSQPIMVLNRRLR---K-NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL  158 (296)
T ss_dssp             SSSCHHHHHHHHHTCSSCEEEESCCCS---S-SGGG---EECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCC---C-CCCC---EEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf             667748888888635986899367678---8-8887---89966189999999999870488599995887770279999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             8999999863985998410175433128---999999984335764589996052078999999971530
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ..|++.+++.+..+...... ....+..   ....++.+..+ .+.. ++......+...+..+.+.+..
T Consensus       159 ~g~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~-~~~a-i~~~~d~~a~g~~~~l~~~g~~  225 (296)
T 3brq_A          159 AGYKDALAQHGIALNEKLIA-NGKWTPASGAEGVEMLLERGA-KFSA-LVASNDDMAIGAMKALHERGVA  225 (296)
T ss_dssp             HHHHHHHHTTTCCCCGGGEE-CCCSSHHHHHHHHHHHHTC---CCSE-EEESSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCC-CCEE-EEECCHHHHHHHHHHHHHCCCC
T ss_conf             99999999759998820675-277888999999999985588-7427-9856869999999999985999


No 33 
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.10  E-value=0.00036  Score=41.58  Aligned_cols=187  Identities=10%  Similarity=0.011  Sum_probs=109.8

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             00356835899982466770567899999999999999855797698589999972788989999999999864885121
Q T0528            12 AVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        12 ~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      +..+..+.+|++++|..-... +-..+..|++.+.++.+..     +..+.+.. .+..|+..-.+.+++++.+ +++.+
T Consensus         2 sLa~~k~~~i~~l~P~~~~~~-y~~~i~~Gi~~aa~e~~~~-----~v~v~~~~-~~~~d~~~~~~~l~~li~~-~vDgi   73 (304)
T 3gbv_A            2 SLASNKKYTFACLLPKHLEGE-YWTDVQKGIREAVTTYSDF-----NISANITH-YDPYDYNSFVATSQAVIEE-QPDGV   73 (304)
T ss_dssp             -----CCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHTGGG-----CEEEEEEE-ECSSCHHHHHHHHHHHHTT-CCSEE
T ss_pred             CCCCCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCC-----CEEEEEEE-CCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf             587899888999988988898-9999999999999973788-----87999995-8989999999999999973-99989


Q ss_pred             -CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCEEEEEECC---
Q ss_conf             -1477513377888999864977864267761015777653489734765788899999997---189389998548---
Q T0528            92 -IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG---KQGVTIATLAQD---  164 (388)
Q Consensus        92 -~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~d---  164 (388)
                       +.+............+.+.++|++.......   +..   .......+....+...+.++.   ++.++++++...   
T Consensus        74 ii~~~~~~~~~~~~~~~~~~~i~vv~~~~~~~---~~~---~~~~v~~d~~~~g~~a~~~l~~~~~~~~~i~~~~~~~~~  147 (304)
T 3gbv_A           74 MFAPTVPQYTKGFTDALNELGIPYIYIDSQIK---DAP---PLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEG  147 (304)
T ss_dssp             EECCSSGGGTHHHHHHHHHHTCCEEEESSCCT---TSC---CSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTT
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCEEEEEECCC---CCC---CCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             97278831218999999866996799840467---663---221224660777888777777640456408999257778


Q ss_pred             ---CHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             ---7432234789999998639--85998410175433128999999984335
Q T0528           165 ---YAFGRDGVAAFKEALAKTG--ATLATEEYVPTTTTDFTAVGQRLFDALKD  212 (388)
Q Consensus       165 ---~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~~d~~~~~~~i~~~~~d  212 (388)
                         ....+.-...+++.+++.+  .++.....-.............+....++
T Consensus       148 ~~~~~~~~~R~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (304)
T 3gbv_A          148 VIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPD  200 (304)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             87761267887637899997475654203540651355557999999964999


No 34 
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=98.07  E-value=0.00042  Score=41.19  Aligned_cols=197  Identities=16%  Similarity=0.114  Sum_probs=112.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf             8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA   98 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~   98 (388)
                      +||+++|-.. ...+ ..+..|++-+.++.        |.  ++++.++..|+..-.+..++++.+ ++++++ .+....
T Consensus         3 tIgvvv~~~~-npf~-~~v~~gi~~~a~~~--------g~--~~~~~~~~~d~~~~~~~l~~~~~~-~~d~ii~~~~~~~   69 (271)
T 2dri_A            3 TIALVVSTLN-NPFF-VSLKDGAQKEADKL--------GY--NLVVLDSQNNPAKELANVQDLTVR-GTKILLINPTDSD   69 (271)
T ss_dssp             EEEEEESCSS-SHHH-HHHHHHHHHHHHHH--------TC--EEEEEECTTCHHHHHHHHHHHTTT-TEEEEEECCSSTT
T ss_pred             EEEEEECCCC-CHHH-HHHHHHHHHHHHHC--------CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf             8999928898-9899-99999999999985--------99--899995899999999999999861-8764432122222


Q ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CC--CEEEEEECC--CHHHHHHHH
Q ss_conf             3778889998649778642677610157776534897347657888999999971-89--389998548--743223478
Q T0528            99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QG--VTIATLAQD--YAFGRDGVA  173 (388)
Q Consensus        99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~v~~i~~d--~~~g~~~~~  173 (388)
                      ........+.+.++|++.......   ...   .......+..........++.+ ..  .++.++...  ....+.-..
T Consensus        70 ~~~~~i~~~~~~~ip~V~~~~~~~---~~~---~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  143 (271)
T 2dri_A           70 AVGNAVKMANQANIPVITLDRQAT---KGE---VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE  143 (271)
T ss_dssp             TTHHHHHHHHHTTCCEEEESSCCS---SSC---CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCC---CCC---CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             316899999863775323565555---455---42378522236799999999996799956999948876638999987


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf             9999998639859984101754331289999999843357645899960520789999999715
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD  237 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                      .+++.+...+.+.............-......+....++ +.. ++..........+..+.+.+
T Consensus       144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a-i~~~~d~~a~g~~~a~~~~g  205 (271)
T 2dri_A          144 GFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQA-VFAQNDEMALGALRALQTAG  205 (271)
T ss_dssp             HHHHHHHHHTCEEEEEEECTTCHHHHHHHHHHHHHHCTT-CCE-EEESSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCC-CEE-EECCCHHHHHHHHHHHHHHC
T ss_conf             666665213455522442011111120046676422568-425-63267688888999999848


No 35 
>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}
Probab=97.95  E-value=0.0007  Score=39.84  Aligned_cols=201  Identities=11%  Similarity=0.012  Sum_probs=110.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT   94 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~   94 (388)
                      ..+=.||+++|-...  .+-..+..|++-++++   .     |.  +++++++..++..-.+..+.++.. ++++++ .+
T Consensus        18 ~~s~~Igvv~p~~~~--~f~~~~~~~i~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~   84 (293)
T 2iks_A           18 GRTRSIGLVIPDLEN--TSYTRIANYLERQARQ---R-----GY--QLLIACSEDQPDNEMRCIEHLLQR-QVDAIIVST   84 (293)
T ss_dssp             CCCCEEEEEESCSCS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred             CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             899989999399988--7999999999999998---6-----99--999995899979999999999866-998899970


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEEC--CCHHHHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-18938999854--87432234
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQ--DYAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~--d~~~g~~~  171 (388)
                      ... ........+...++|++.......   . .   .+.....++...+...+.++. .+.++++++..  +......-
T Consensus        85 ~~~-~~~~~~~~~~~~~ipvv~~~~~~~---~-~---~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r  156 (293)
T 2iks_A           85 SLP-PEHPFYQRWANDPFPIVALDRALD---R-E---HFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLR  156 (293)
T ss_dssp             SSC-TTCHHHHTTTTSSSCEEEEESCCC---T-T---TCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHH
T ss_pred             CCC-CCHHHHHHHHHCCCCEEEEECCCC---C-C---CCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
T ss_conf             554-457999999857993899951456---6-7---7764732608899999999885488569999326767613567


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             78999999863985998410175433128999999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|++.+++.+.++.....-.....+....+.++....++ + ..++......+.-.+..+.+.+.+
T Consensus       157 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~ai~~~~d~~a~g~~~al~~~g~~  222 (293)
T 2iks_A          157 EQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPM-P-QALFTTSFALLQGVMDVTLRRDGK  222 (293)
T ss_dssp             HHHHHHHHTTCCCCEEEEEESSSCHHHHHHHHHHHTTTSCC-C-SEEEESSHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC-C-CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             69999999976996123002110056677789998740688-6-410047789999999999984999


No 36 
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.89  E-value=0.00091  Score=39.16  Aligned_cols=204  Identities=7%  Similarity=-0.020  Sum_probs=109.2

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf             3568358999824667705678999999999999998557976985899999727889899999999998648851211-
Q T0528            14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-   92 (388)
Q Consensus        14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-   92 (388)
                      .+...-+||+++|--. . .+-..+..|++-+.+.   .|       .++++.++..++..-.+.+++|+.+ ++++|+ 
T Consensus         4 ~~~~~~~IGvi~~~~~-~-~f~~~~~~gi~~~a~~---~g-------y~l~~~~~~~~~~~e~~~i~~l~~~-~vdgiii   70 (293)
T 3l6u_A            4 TSPKRNIVGFTIVNDK-H-EFAQRLINAFKAEAKA---NK-------YEALVATSQNSRISEREQILEFVHL-KVDAIFI   70 (293)
T ss_dssp             -----CEEEEEESCSC-S-HHHHHHHHHHHHHHHH---TT-------CEEEEEECSSCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred             CCCCCCEEEEEEECCC-C-HHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf             8899998999997898-7-9999999999999998---79-------9899997999989999999999976-9989997


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHH----HH-HHHHHCC---CEEEEEE--
Q ss_conf             477513377888999864977864267761015777653489734765788899----99-9997189---3899985--
Q T0528            93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAIS----NA-VAIGKQG---VTIATLA--  162 (388)
Q Consensus        93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~---~~v~~i~--  162 (388)
                      .+..+.........+.+.++|++.......   ...   .......+.......    ++ ....+.+   .+++.+.  
T Consensus        71 ~~~~~~~~~~~l~~a~~~~IPvV~~~~~~~---~~~---~~~~v~~~~~~~g~~~a~~l~~~~~~~~g~~~~~~~~~~g~  144 (293)
T 3l6u_A           71 TTLDDVYIGSAIEEAKKAGIPVFAIDRMIR---SDA---VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGT  144 (293)
T ss_dssp             ECSCTTTTHHHHHHHHHTTCCEEEESSCCC---CTT---CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECS
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEECCCCC---CCC---CCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             156630159999999976992999887788---776---33056246699999999998777899728887508998489


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             48743223478999999863985998410175-43312899999998433576458999605207899999997153
Q T0528           163 QDYAFGRDGVAAFKEALAKTGATLATEEYVPT-TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       163 ~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~-~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      .+....+.-...|++.+++.+...+....... ...+-...+.++....++ +.. ++......+.-.+..+.+.+.
T Consensus       145 ~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~a-I~~~~d~~a~g~~~al~~~g~  219 (293)
T 3l6u_A          145 ANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIP-FDA-VYCHNDDIAMGVLEALKKAKI  219 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCC-CSE-EEESSHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCC-CEE-EEECCCHHHHHHHHHHHHCCC
T ss_conf             987689999985344455438853001100121078899999863214788-459-997781899999999997699


No 37 
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.82  E-value=0.0012  Score=38.49  Aligned_cols=208  Identities=9%  Similarity=0.040  Sum_probs=112.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf             589998246677056789999999999999985579769858999997278898999999999986488-5121147751
Q T0528            19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDG-ADIAIGTSSS   97 (388)
Q Consensus        19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~-v~~i~G~~~S   97 (388)
                      ..|.++.|-......+ ..+.+|++.+.++.        |  +++++.+++.|+..-.+.+++++.+.. ..+++.....
T Consensus         4 ~sVvf~~P~~~~~pF~-~~i~~gie~aa~~~--------G--~~l~i~~s~~d~~~q~~~i~~li~~~~~~~~i~~~~~~   72 (350)
T 3h75_A            4 TSVVFLNPGNSTETFW-VSYSQFMQAAARDL--------G--LDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ   72 (350)
T ss_dssp             CEEEEEECSCTTCHHH-HHHHHHHHHHHHHH--------T--CEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred             EEEEEECCCCCCCHHH-HHHHHHHHHHHHHC--------C--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             7999986998889899-99999999999973--------9--98999948999999999999998479986999977842


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCC-------CCCCCCEEEEECCCHHHHHHHHHHH-HHH-------CCCEEEEEE
Q ss_conf             3377888999864977864267761015-------7776534897347657888999999-971-------893899985
Q T0528            98 AAALADLPVAEENKKILIVEPAVADQIT-------GEKWNRYIFRTGRNSSQDAISNAVA-IGK-------QGVTIATLA  162 (388)
Q Consensus        98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~v~~i~  162 (388)
                      .....+...+.+.++|++..........       ......++-....++...+...+.+ +.+       +..+++++.
T Consensus        73 ~~~~~i~~~a~~~gIPvV~id~~~~~~~~~~~~~~~~~~~~~v~~v~~dn~~~G~~~a~~li~~~~~~~~g~~~~i~~i~  152 (350)
T 3h75_A           73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS  152 (350)
T ss_dssp             SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred             CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             03699999999779949992665565310000135434676411253676999999999999863555338864799995


Q ss_pred             C--CCHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             4--8743223478999999863-985998410175433128999999984335764589996052078999999971530
Q T0528           163 Q--DYAFGRDGVAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       163 ~--d~~~g~~~~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .  .+.....=...|++++++. +.+++....-......-.....++.+..++ + ..+++..-..+.-.+.++.+.+.+
T Consensus       153 g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~p~-~-~aI~~~nD~~A~Ga~~Al~~~G~~  230 (350)
T 3h75_A          153 GLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPK-T-QLVWSANDEMALGAMQAARELGRK  230 (350)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT-E-EEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCC-C-CEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             78677277776665533443078754110001111147999999999974999-7-399988779999999999975999


No 38 
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.75  E-value=0.0015  Score=37.77  Aligned_cols=205  Identities=12%  Similarity=0.072  Sum_probs=107.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      .+.+-+||+++|.......+-..+.+|++-+++   +.     |.  ++++.....+.+. .....+++...++++++=.
T Consensus         5 t~kt~~Iglv~~~~~~~~~f~~~~i~gi~~~~~---~~-----gy--~l~v~~~~~~~~~-~~~~~~~l~~~~vdgiIl~   73 (288)
T 3gv0_A            5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLS---TT-----QY--HLVVTPHIHAKDS-MVPIRYILETGSADGVIIS   73 (288)
T ss_dssp             --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHT---TS-----SC--EEEECCBSSGGGT-THHHHHHHHHTCCSEEEEE
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH---HC-----CC--EEEEEECCCCHHH-HHHHHHHHHCCCCCEEEEE
T ss_conf             899997999937676678599999999999999---86-----99--8999968999699-9999999863897779874


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-7189389998548--7432234
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~  171 (388)
                      ..+.. ......+.+.++|++.......   ... .+   ....+....+.....++ .++.++++++..+  ......-
T Consensus        74 ~~~~~-~~~~~~~~~~~iPvV~i~~~~~---~~~-~~---~V~~d~~~a~~~a~~~L~~~g~~~I~~i~~~~~~~~~~~r  145 (288)
T 3gv0_A           74 KIEPN-DPRVRFMTERNMPFVTHGRSDM---GIE-HA---FHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHA  145 (288)
T ss_dssp             SCCTT-CHHHHHHHHTTCCEEEESCCCS---SCC-CE---EEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHH
T ss_pred             CCCCC-HHHHHHHHHCCCCCEECCCCCC---CCC-CC---EEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH
T ss_conf             02332-1677877751497220011357---998-76---6853552567777777631253403687177433225666


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             78999999863985998410175433128999999984335764-589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPG-KKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|++++++.|.+......+ ....++......+.+.....+. ..+++..-..+...+..+.+.+..
T Consensus       146 ~~Gf~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~  213 (288)
T 3gv0_A          146 RKGFNRGIRDFGLTEFPIDAV-TIETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVK  213 (288)
T ss_dssp             HHHHHHHHHHTTCEECCCCSC-CTTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHCCHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             788899999863110033303-43211135778887654303577400113478888778887633301


No 39 
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.70  E-value=0.0018  Score=37.32  Aligned_cols=207  Identities=13%  Similarity=0.031  Sum_probs=112.6

Q ss_pred             CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             568358999824667705---67899999999999999855797698589999972788989999999999864885121
Q T0528            15 AADDLKIALIYGKTGPLE---AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a---~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      ...+-+||+++|-+....   .+-.++.+|++-+++.   .     |+  .+++.++..+++.-.+..+.+. +.++++|
T Consensus         4 ~~~t~~Igl~~~~~~~~~~~npf~~~~~~gi~~~a~~---~-----gy--~l~~~~~~~~~~~~~~~~~~l~-~~~vdgi   72 (295)
T 3hcw_A            4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ---H-----GY--GTQTTVSNNMNDLMDEVYKMIK-QRMVDAF   72 (295)
T ss_dssp             CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT---T-----TC--EEEECCCCSHHHHHHHHHHHHH-TTCCSEE
T ss_pred             CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHH-HCCCCEE
T ss_conf             6776989999906876665696899999999999998---5-----99--8999978999799999999999-6699849


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCC--HHH
Q ss_conf             14775133778889998649778642677610157776534897347657888999999-971893899985487--432
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQDY--AFG  168 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~--~~g  168 (388)
                      +-.. +.......+.+.+.++|++.........   +  ..+.....+....+.....+ ..++.+++++|....  ...
T Consensus        73 Ii~~-~~~~~~~~~~l~~~~iPvV~i~~~~~~~---~--~~~~~v~~d~~~~~~~~~~~l~~~G~~~I~~i~~~~~~~~~  146 (295)
T 3hcw_A           73 ILLY-SKENDPIKQMLIDESMPFIVIGKPTSDI---D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVS  146 (295)
T ss_dssp             EESC-CCTTCHHHHHHHHTTCCEEEESCCCSSG---G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHH
T ss_pred             EEEE-CCCCCHHHHHHHHHHCCCEEEECCCCCC---C--CCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             9972-2553156788886401000253035667---7--65302222348888888887520132233224555432014


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             2347899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528           169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      +.-...|++++++.|.+..... ......+.....+++.......+ ...+++.....+...+..+.+.+.+
T Consensus       147 ~~r~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~a~g~~~~l~~~g~~  217 (295)
T 3hcw_A          147 KDRIQGFETVASQFNLDYQIIE-TSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE  217 (295)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEE-ECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             5556889999987498511011-4554035666655554320357776422222201333335544203322


No 40 
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=97.65  E-value=0.0022  Score=36.90  Aligned_cols=199  Identities=6%  Similarity=-0.046  Sum_probs=108.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf             58999824667705678999999999999998557976985899999727889899999999998648851211-47751
Q T0528            19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSS   97 (388)
Q Consensus        19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S   97 (388)
                      =+|.++.+..|.  .+-..+.+|++-+.++.        |.++.+ +.++..|+..-.+.+++++.+ ++++|+ .+..+
T Consensus         5 k~i~~i~~~~~n--pf~~~~~~Gi~~~a~~~--------g~~~~~-~~~~~~d~~~q~~~i~~~i~~-~~DgIIi~~~~~   72 (303)
T 3d02_A            5 KTVVNISKVDGM--PWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIAR-KVDAITIVPNDA   72 (303)
T ss_dssp             EEEEEECSCSSC--HHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSCH
T ss_pred             CEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEEEE-EECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             889999788999--79999999999999974--------998999-978999999999999999975-999899942584


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-H-CCC-EEEEEE--CCCHHHHHHH
Q ss_conf             3377888999864977864267761015777653489734765788899999997-1-893-899985--4874322347
Q T0528            98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-K-QGV-TIATLA--QDYAFGRDGV  172 (388)
Q Consensus        98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~v~~i~--~d~~~g~~~~  172 (388)
                      .........+.+.++|++.......      ....+.....+........+.++. + +.+ .+.++.  ........-.
T Consensus        73 ~~~~~~~~~~~~~gipvv~~~~~~~------~~~~~~~v~~d~~~~g~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~  146 (303)
T 3d02_A           73 NVLEPVFKKARDAGIVVLTNESPGQ------PSANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWA  146 (303)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESCTTC------TTCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCEEECCCCCC------CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             1104899999976995884478888------7777409985739999999999999569981599942888866899999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHHHCC
Q ss_conf             899999986398599841017543312---899999998433576458999605207-899999997153
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDF---TAVGQRLFDALKDKPGKKIIWVIWAGG-GDPLTKLQDMDP  238 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~---~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~  238 (388)
                      ..+++.+++.+..+...........+.   ......+.+..++   ...+....... .-.+.++.+.+.
T Consensus       147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~---~~~i~~~~d~~a~g~~~a~~~~g~  213 (303)
T 3d02_A          147 DLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPD---LKAVVSFGSNGPIGAGRAVKEKRA  213 (303)
T ss_dssp             HHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTT---EEEEEESSTTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC---CEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             9999999752886533115623786569999999999861998---518995685899999999997699


No 41 
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=97.61  E-value=0.0025  Score=36.50  Aligned_cols=195  Identities=13%  Similarity=0.055  Sum_probs=108.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Q ss_conf             98246677056789999999999999985579769858999997278898999999999986488512-11477513377
Q T0528            23 LIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSSSAAAL  101 (388)
Q Consensus        23 ~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~S~~~~  101 (388)
                      ++...+|.  .+-..+..|++-+.++.|        ..+.+. .....|+..-.+.+++++.+ ++++ |+.|..+....
T Consensus         9 ~v~~~~~~--~f~~~v~~G~~~~a~~~g--------~~l~~~-~~~~~d~~~q~~~i~~li~~-~~DgIIi~~~~~~~~~   76 (305)
T 3g1w_A            9 MITFQSGM--DYWKRCLKGFEDAAQALN--------VTVEYR-GAAQYDIQEQITVLEQAIAK-NPAGIAISAIDPVELT   76 (305)
T ss_dssp             EEESSTTS--THHHHHHHHHHHHHHHHT--------CEEEEE-ECSSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTTTH
T ss_pred             EEECCCCC--HHHHHHHHHHHHHHHHCC--------CEEEEE-ECCCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHH
T ss_conf             99789998--299999999999999729--------979999-79999999999999999977-9999999678737789


Q ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHHHHHHHHHH
Q ss_conf             8889998649778642677610157776534897347657888999999971---893899985487-432234789999
Q T0528           102 ADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQDY-AFGRDGVAAFKE  177 (388)
Q Consensus       102 ~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~d~-~~g~~~~~~~~~  177 (388)
                      .....+.+.++|++......+.   ..   .......+....+...+.++.+   +..+++++.... .....-...|+.
T Consensus        77 ~~l~~~~~~gIpvV~~d~~~~~---~~---~~~~v~~d~~~~g~~~~~~l~~~~~~~~~v~i~~~~~~~~~~~R~~gf~~  150 (305)
T 3g1w_A           77 DTINKAVDAGIPIVLFDSGAPD---SH---AHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE  150 (305)
T ss_dssp             HHHHHHHHTTCCEEEESSCCTT---SC---CSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCC---CC---CCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             9999999869929998167776---77---64299516176689999999997145761999931243128999999999


Q ss_pred             HHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf             998639--859984101754331289999999843357645899960520789999999715
Q T0528           178 ALAKTG--ATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD  237 (388)
Q Consensus       178 ~~~~~g--~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                      .+++.+  .+++....-......-...+.++.+..++.  ..++..........+.++.+.+
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~p~~--~aI~~~~d~~a~g~~~al~~~g  210 (305)
T 3g1w_A          151 TLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNL--AGIFATEANGGVGVGDAVRLES  210 (305)
T ss_dssp             HHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTE--EEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCC--CEEEECCCHHHHHHHHHHHHCC
T ss_conf             99875776631457516653588999999874038998--8899777489999999999769


No 42 
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=97.58  E-value=0.0027  Score=36.31  Aligned_cols=198  Identities=11%  Similarity=0.028  Sum_probs=108.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf             8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA   98 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~   98 (388)
                      |||+++|.- .. .+-..+..|++.+.++   .     |  +++.+.+++.++..-.+..++++.+ ++++|+ .+....
T Consensus         4 ~Igvv~p~~-~n-~f~~~~~~gi~~~a~~---~-----g--~~l~~~~~~~d~~~~~~~i~~l~~~-~vdgiii~~~~~~   70 (290)
T 2fn9_A            4 KMAIVISTL-NN-PWFVVLAETAKQRAEQ---L-----G--YEATIFDSQNDTAKESAHFDAIIAA-GYDAIIFNPTDAD   70 (290)
T ss_dssp             EEEEEESCS-SS-HHHHHHHHHHHHHHHH---T-----T--CEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCTT
T ss_pred             EEEEEECCC-CC-HHHHHHHHHHHHHHHH---C-----C--CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf             899992899-89-9999999999999998---5-----9--9899995899989999999999974-9996885303541


Q ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH----HHC-----CCEEEEEE--CCCHH
Q ss_conf             37788899986497786426776101577765348973476578889999999----718-----93899985--48743
Q T0528            99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI----GKQ-----GVTIATLA--QDYAF  167 (388)
Q Consensus        99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~v~~i~--~d~~~  167 (388)
                      ........+.+.++|++.......   ...  ........+....+.....++    .++     ..++..+.  ..+..
T Consensus        71 ~~~~~l~~~~~~gipvv~~~~~~~---~~~--~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (290)
T 2fn9_A           71 GSIANVKRAKEAGIPVFCVDRGIN---ARG--LAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQP  145 (290)
T ss_dssp             TTHHHHHHHHHTTCCEEEESSCCS---CSS--SSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCC---CCC--CCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH
T ss_conf             028999999976991999768866---556--765299447899999999998886412345565530565237877707


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf             22347899999986398599841017543-31289999999843357645899960520789999999715
Q T0528           168 GRDGVAAFKEALAKTGATLATEEYVPTTT-TDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD  237 (388)
Q Consensus       168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                      ...-...+++.++..+............. .+-.....++....++ + ..++...-..+.-.+.++.+.+
T Consensus       146 ~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ai~~~~d~~a~g~~~a~~~~g  214 (290)
T 2fn9_A          146 TWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPE-I-KAIWCGNDAMALGAMKACEAAG  214 (290)
T ss_dssp             HHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT-C-CEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC-C-EEEEECCHHHHHHHHHHHHHCC
T ss_conf             8899989999997468876047983430268899999998864537-5-4999778499999999999729


No 43 
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.22  E-value=0.0075  Score=33.66  Aligned_cols=211  Identities=9%  Similarity=0.014  Sum_probs=111.6

Q ss_pred             HHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             78511003568358999824667705678999999999999998557976985899999727889899999999998648
Q T0528             7 ALATTAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDD   86 (388)
Q Consensus         7 ~l~~~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~   86 (388)
                      .+.+.....+.+-.||+++|.-... .+...+..|++-+.+   +.|     .  ++++++...+++...+..+.|+...
T Consensus         2 ~~~Ar~L~~~~s~~Igliv~~~~~~-~f~~~~~~gi~~~a~---~~g-----~--~l~i~~~~~~~~~~~~~~~~l~~~~   70 (301)
T 3miz_A            2 SLAARLIRSSRSNTFGIITDYVSTT-PYSVDIVRGIQDWAN---ANG-----K--TILIANTGGSSEREVEIWKMFQSHR   70 (301)
T ss_dssp             ----------CCCEEEEEESSTTTC-CSCHHHHHHHHHHHH---HTT-----C--EEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHH---HCC-----C--EEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             8889999778999899995887679-799999999999999---779-----9--8999978999699999999987478


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC-
Q ss_conf             85121147751337788899986497786426776101577765348973476578889999999-7189389998548-
Q T0528            87 GADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD-  164 (388)
Q Consensus        87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d-  164 (388)
                      --.+|+-+..+..   ......+.++|++.......   .....+   ....+....+...+.++ .++.++++++..+ 
T Consensus        71 ~dgiIi~~~~~~~---~~~~~~~~~ip~V~~~~~~~---~~~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~  141 (301)
T 3miz_A           71 IDGVLYVTMYRRI---VDPESGDVSIPTVMINCRPQ---TRELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNP  141 (301)
T ss_dssp             CSEEEEEEEEEEE---CCCCCTTCCCCEEEEEEECS---STTSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCT
T ss_pred             CCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCC---CCCCCC---EEEECHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             7689985133204---58999836999899933557---888887---89977899999999999982996799981786


Q ss_pred             -CHHHHHHHHHHHHHHHHCCCE-----EEEEEECCCCC-CC-HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf             -743223478999999863985-----99841017543-31-28999999984335764589996052078999999971
Q T0528           165 -YAFGRDGVAAFKEALAKTGAT-----LATEEYVPTTT-TD-FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDM  236 (388)
Q Consensus       165 -~~~g~~~~~~~~~~~~~~g~~-----vv~~~~~~~~~-~d-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  236 (388)
                       ....+.-...|+..+.+.+..     +......+... .+ ......++....++ +. .++........-.+..+.+.
T Consensus       142 ~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-aii~~~d~~a~g~~~~l~~~  219 (301)
T 3miz_A          142 ILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDR-PT-AIMSGNDEMAIQIYIAAMAL  219 (301)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTC-CS-EEEESSHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CC-CCCCCCHHHHHHHHHHHHHC
T ss_conf             55526676699999999859986762577402453035677999999999955999-98-44358899999999999985


Q ss_pred             CCH
Q ss_conf             530
Q T0528           237 DPK  239 (388)
Q Consensus       237 ~~~  239 (388)
                      +.+
T Consensus       220 g~~  222 (301)
T 3miz_A          220 GLR  222 (301)
T ss_dssp             TCC
T ss_pred             CCC
T ss_conf             999


No 44 
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.18  E-value=0.0082  Score=33.41  Aligned_cols=206  Identities=11%  Similarity=0.000  Sum_probs=105.3

Q ss_pred             CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             10035683589998246677056789999999999999985579769858999997278898999999999986488512
Q T0528            11 TAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI   90 (388)
Q Consensus        11 ~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~   90 (388)
                      .+...+..=.||+++|. --...+-..+.+|++-.+.+   .     |+.+.+...++..+....   ..++....++++
T Consensus         4 r~~~s~~~~~i~l~~~~-d~~~~~~~~l~~gi~~~l~~---~-----gy~~~l~~~~~~~~~~~~---~~~~~~~~~vdG   71 (289)
T 3g85_A            4 RSKNSQSKPTIALYWSS-DISVNIISRFLRGLQSKLAK---Q-----NYNYNVVICPYKTDCLHL---EKGISKENSFDA   71 (289)
T ss_dssp             -------CCEEEEEEET-TSCGGGHHHHHHHHHHHHHH---T-----TTCSEEEEEEECTTCGGG---CGGGSTTTCCSE
T ss_pred             CCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHH---C-----CCCEEEEECCCCHHHHHH---HHHHHHHCCCCE
T ss_conf             77644899989999687-56878999999999999998---6-----996799985897239999---999998579888


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HH
Q ss_conf             1147751337788899986497786426776101577765348973476578889999999-71893899985487--43
Q T0528            91 AIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AF  167 (388)
Q Consensus        91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~  167 (388)
                      ++-...+..... .......++|++......      +..++   ...+....+...+.++ .++.+++++|..+.  ..
T Consensus        72 iIi~~~~~~~~~-~~~~~~~~iPvV~~~~~~------~~~~~---V~~D~~~~~~~~~~~L~~~G~r~i~~i~~~~~~~~  141 (289)
T 3g85_A           72 AIIANISNYDLE-YLNKASLTLPIILFNRLS------NKYSS---VNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDA  141 (289)
T ss_dssp             EEESSCCHHHHH-HHHHCCCSSCEEEESCCC------SSSEE---EEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHH
T ss_pred             EEECCCCCCCHH-HHHHHCCCCCEEEEEECC------CCCCE---EEECCHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
T ss_conf             997688888199-999854998689984168------99998---99787999999999898759844303576767858


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             22347899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528           168 GRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...-...|++++++.|.++....-+ ....++....+.+++.....+ ...++...-..+...+..+.+.+.+
T Consensus       142 ~~~R~~Gf~~a~~~~g~~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~  213 (289)
T 3g85_A          142 MDNRNKGFIETCHKNGIKISENHII-AAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQIS  213 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCGGGEE-ECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             9999999889987169963120123-57632004889998764116887510027889999999999985999


No 45 
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.16  E-value=0.0087  Score=33.26  Aligned_cols=201  Identities=7%  Similarity=-0.041  Sum_probs=109.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      +.-+||+++|-- .. .+-..+.+|++-++++   .|     .  +++++++..+++.-.+..+.|+.. ++++++-...
T Consensus         2 ~~~tIgvi~p~~-~~-~~~~~~~~~i~~~~~~---~g-----y--~l~l~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~   68 (275)
T 3d8u_A            2 NAYSIALIIPSL-FE-KACAHFLPSFQQALNK---AG-----Y--QLLLGYSDYSIEQEEKLLSTFLES-RPAGVVLFGS   68 (275)
T ss_dssp             --CEEEEEESCS-SC-HHHHHHHHHHHHHHHH---TS-----C--EECCEECTTCHHHHHHHHHHHHTS-CCCCEEEESS
T ss_pred             CCEEEEEEECCC-CC-HHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             871999992988-77-6999999999999998---69-----9--899996899989999999999964-9989999089


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHHHHH
Q ss_conf             13377888999864977864267761015777653489734765788899999997-189389998548--743223478
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRDGVA  173 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~~~~  173 (388)
                      +. ...........++|++.......    ..   .+.....+....+...+.++. ++.++++++...  ......-..
T Consensus        69 ~~-~~~~~~~l~~~~~pvV~i~~~~~----~~---~~~~V~~D~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~  140 (275)
T 3d8u_A           69 EH-SQRTHQLLEASNTPVLEIAELSS----KA---SYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLH  140 (275)
T ss_dssp             CC-CHHHHHHHHHHTCCEEEESSSCS----SS---SSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHH
T ss_pred             CC-CHHHHHHHHHCCCCEEEECCCCC----CC---CCCEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             89-98999999976998999878788----88---887899658999999999998635863876157776168899988


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             999999863985998410175433128999999984335764-589996052078999999971530
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPG-KKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .|+.++++.+....... ......+.......+.+.....+. ..++...-..+.-.+..+...+..
T Consensus       141 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~  206 (275)
T 3d8u_A          141 GWQSAMIENYLTPDHFL-TTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLK  206 (275)
T ss_dssp             HHHHHHHHTTCCCCCEE-ECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             99999998099952100-2456542778999999876540454079975829999999999981887


No 46 
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.10  E-value=0.01  Score=32.89  Aligned_cols=189  Identities=9%  Similarity=-0.033  Sum_probs=101.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA   99 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~   99 (388)
                      .||+++|-. . ..+-..+.+|++-++++.        |+  ++++.++..|++.-.+..+.|+. .+++.++-...+..
T Consensus         4 ~Igviv~~~-~-~~~~~~~~~~i~~~~~~~--------gy--~~~i~~s~~d~~~~~~~l~~l~~-~~vdGiI~~~~~~~   70 (255)
T 1byk_A            4 VVAIIVTRL-D-SLSENLAVQTMLPAFYEQ--------GY--DPIMMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGI   70 (255)
T ss_dssp             EEEEEESCT-T-CHHHHHHHHHHHHHHHHH--------TC--EEEEEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTC
T ss_pred             EEEEEECCC-C-CHHHHHHHHHHHHHHHHC--------CC--EEEEEECCCCHHHHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf             999996998-8-989999999999999986--------99--89999589998999999999996-59999996799931


Q ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC---CHHHHHHHHHH
Q ss_conf             7788899986497786426776101577765348973476578889999999-7189389998548---74322347899
Q T0528           100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD---YAFGRDGVAAF  175 (388)
Q Consensus       100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d---~~~g~~~~~~~  175 (388)
                      ..   .+....++|++...-.      ...   +.....+....+...+.++ .++.+++++|...   ....+.-...|
T Consensus        71 ~~---~~~~~~~~p~v~~~~~------~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~g~  138 (255)
T 1byk_A           71 TE---EMLAHWQSSLVLLARD------AKG---FASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAY  138 (255)
T ss_dssp             CT---TTSGGGSSSEEEESSC------CSS---CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHH
T ss_pred             HH---HHHHHCCCCEEEEECC------CCC---CCEEEECHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf             79---9999769999999357------899---98899888999999999999829972887454467752889999999


Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             999986398599841017543312899999998433576458999605207899999997153
Q T0528           176 KEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       176 ~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      ++.+++.|.+...... .   .+.....+.+.+.....+..++ ...-..+.-.+..+.+.+.
T Consensus       139 ~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~~~~~aii-~~~d~~A~g~~~~l~~~g~  196 (255)
T 1byk_A          139 LAFCKAHKLHPVAALP-G---LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI  196 (255)
T ss_dssp             HHHHHHTTCCCEEECC-C---SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCCCCCCCC-C---CCHHHHHHHHHHHCCCCCCEEE-CCCHHHHHHHHHHHHHCCC
T ss_conf             9999986998411248-8---8778899999975146776230-1747889999999998299


No 47 
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.09  E-value=0.01  Score=32.86  Aligned_cols=202  Identities=15%  Similarity=0.061  Sum_probs=106.2

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972-78898999999999986488512114
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKD-DQSKPDLSKAALAEAYQDDGADIAIG   93 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D-~~~~~~~a~~~~~~li~~~~v~~i~G   93 (388)
                      ...+=.||+++|....  .+-.++..|++-..++   .     |.++  ++++ +.+++....+..+.|+.. ++++++-
T Consensus         5 ~~~s~~Igvv~p~~~~--~f~~~li~gi~~~a~~---~-----g~~l--~l~~~~~~d~~~~~~~i~~l~~~-~vdGvI~   71 (290)
T 3clk_A            5 KKSSNVIAAVVSSVRT--NFAQQILDGIQEEAHK---N-----GYNL--IIVYSGSADPEEQKHALLTAIER-PVMGILL   71 (290)
T ss_dssp             ---CCEEEEECCCCSS--SHHHHHHHHHHHHHHT---T-----TCEE--EEEC----------CHHHHHHSS-CCSEEEE
T ss_pred             CCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf             9999989999499976--8999999999999998---5-----9989--99968999999999999999867-9888999


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC--HHHHH
Q ss_conf             77513377888999864977864267761015777653489734765788899999997-1893899985487--43223
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY--AFGRD  170 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~--~~g~~  170 (388)
                      ... .........+.+.++|++......   ..  ..+   ....+....+...+.++. ++.++++++....  ...+.
T Consensus        72 ~~~-~~~~~~~~~l~~~~iPvV~~~~~~---~~--~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~  142 (290)
T 3clk_A           72 LSI-ALTDDNLQLLQSSDVPYCFLSMGF---DD--DRP---FISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRK  142 (290)
T ss_dssp             ESC-C----CHHHHHCC--CEEEESCC-----C--CSC---EEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHH
T ss_pred             EEC-CCCHHHHHHHHHCCCCEEECCCCC---CC--CCC---EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             603-345599999984688789346668---99--998---899676899999999998739864886047743101578


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             478999999863985998410175433128999999984335764589996052078999999971530
Q T0528           171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      -...++..++..+.........+. ..+.......+...........++......+...+..+.+.+.+
T Consensus       143 r~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~l~~~G~~  210 (290)
T 3clk_A          143 RLAGYKKALKEANIAINQEWIKPG-DYSYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIE  210 (290)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGEECC-CSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCCCCCCHHEECC-CCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             999999999982997762000115-45478999998764137533067327779999999999873356


No 48 
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=96.99  E-value=0.013  Score=32.29  Aligned_cols=203  Identities=15%  Similarity=0.054  Sum_probs=108.1

Q ss_pred             CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             568358999824667705---67899999999999999855797698589999972788989999999999864885121
Q T0528            15 AADDLKIALIYGKTGPLE---AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a---~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      .+.+-+||+++|.+.+..   .+-..+.+|++-+.++   .|       +++++.++..+++.-.+ ..+++...+++++
T Consensus        19 ~~ks~~Igvi~~~~~~~~~~~pf~~~l~~gi~~~a~~---~g-------~~~~v~~~~~~~~~~~~-~~~~l~~~~vdgi   87 (305)
T 3huu_A           19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV---RG-------YSTRMTVSENSGDLYHE-VKTMIQSKSVDGF   87 (305)
T ss_dssp             --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH---HT-------CEEEECCCSSHHHHHHH-HHHHHHTTCCSEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHH-HHHHHHHCCCCEE
T ss_conf             0899979999777653223797999999999999997---59-------98999967887599999-9999983898889


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHH
Q ss_conf             147751337788899986497786426776101577765348973476578889999999-7189389998548--7432
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFG  168 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g  168 (388)
                      +-... .........+...++|++.......   ..    .+-....+....+...+.++ .++.+++++|...  ....
T Consensus        88 Ii~~~-~~~~~~~~~l~~~~ipvv~v~~~~~---~~----~~~~v~~d~~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~  159 (305)
T 3huu_A           88 ILLYS-LKDDPIEHLLNEFKVPYLIVGKSLN---YE----NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVT  159 (305)
T ss_dssp             EESSC-BTTCHHHHHHHHTTCCEEEESCCCS---ST----TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHH
T ss_pred             EEECC-CCCHHHHHHHHHCCCCEEEEEECCC---CC----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             98436-7875899999964999799950435---78----8777850718999999999987098765556799766079


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             23478999999863985998410175433128999999984335764589996052078999999971530
Q T0528           169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ..-...+++.+++.+..........  ..+......+........+.. +++..-..+.-.+..+.+.+.+
T Consensus       160 ~~R~~g~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a-i~~~~d~~A~g~~~al~~~g~~  227 (305)
T 3huu_A          160 EDRSVGFKQYCDDVKISNDCVVIKS--MNDLRDFIKQYCIDASHMPSV-IITSDVMLNMQLLNVLYEYQLR  227 (305)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEECS--HHHHHHHC--------CCCSE-EEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEC--CCHHHHHHHHHHHHCCCCCCE-EECCCHHHHHHHHHHHHHCCCC
T ss_conf             9999999999998599965067513--421566899999957999863-3138889999999999975998


No 49 
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A*
Probab=96.96  E-value=0.013  Score=32.15  Aligned_cols=178  Identities=12%  Similarity=0.065  Sum_probs=94.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCCC-CCCC
Q ss_conf             83589998246677056789999999999999985579769858999997-278898999999999986488512-1147
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITK-DDQSKPDLSKAALAEAYQDDGADI-AIGT   94 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~-D~~~~~~~a~~~~~~li~~~~v~~-i~G~   94 (388)
                      ...|||++.+..+.  .+-..+.+|++-+.++.        |.++  ++. .+..|++.-.+.++.++.+ ++++ ++.+
T Consensus         2 ~~~~Ia~i~~~~~n--pf~~~~~~g~~~aa~~~--------G~~v--~~~~~~~~d~~~q~~~i~~~i~~-~~d~Iii~~   68 (316)
T 1tjy_A            2 SAERIAFIPKLVGV--GFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSA   68 (316)
T ss_dssp             CCCEEEEECSSSSS--HHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred             CCCEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEE--EEEECCCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf             77889999499999--99999999999999981--------9989--99979999999999999999973-997442013


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-H---HCCCEEEEEECCC--HHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-7---1893899985487--432
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-G---KQGVTIATLAQDY--AFG  168 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~i~~d~--~~g  168 (388)
                      ..+.........+.+.++|++...+....   .. . ..+....+............ .   .....+.++....  ...
T Consensus        69 ~d~~~~~~~~~~a~~~gipvv~~d~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (316)
T 1tjy_A           69 VSPDGLCPALKRAMQRGVKILTWDSDTKP---EC-R-SYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ  143 (316)
T ss_dssp             SSSSTTHHHHHHHHHTTCEEEEESSCCCG---GG-C-SEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCEEECCCCCCC---CC-C-CEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCH
T ss_conf             33202456888765058520103543335---66-6-4034227568999999999998604555420000246764201


Q ss_pred             HHHHHHHHHHHHH--CCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             2347899999986--3985998410175433128999999984335
Q T0528           169 RDGVAAFKEALAK--TGATLATEEYVPTTTTDFTAVGQRLFDALKD  212 (388)
Q Consensus       169 ~~~~~~~~~~~~~--~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d  212 (388)
                      ......+......  ....++...........-......+....++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  189 (316)
T 1tjy_A          144 NQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPD  189 (316)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             3566667777650355332012330214678889999998732898


No 50 
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.92  E-value=0.015  Score=31.90  Aligned_cols=199  Identities=9%  Similarity=-0.011  Sum_probs=106.3

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-C
Q ss_conf             568358999824667705678999999999999998557976985899999727889899999999998648851211-4
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-G   93 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G   93 (388)
                      .+.+=.||+++|.+-|  .+ .++.+|++-+.++   .     |.  ++++.++..+++.-.+..+.|+.+ ++++++ .
T Consensus         5 ~~ks~~Igvivp~~~p--f~-~~l~~gi~~~~~~---~-----g~--~~~v~~~~~~~~~~~~~i~~l~~~-~vdgiIl~   70 (288)
T 2qu7_A            5 TGRSNIIAFIVPDQNP--FF-TEVLTEISHECQK---H-----HL--HVAVASSEENEDKQQDLIETFVSQ-NVSAIILV   70 (288)
T ss_dssp             --CEEEEEEEESSCCH--HH-HHHHHHHHHHHGG---G-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TEEEEEEC
T ss_pred             CCCCCEEEEEECCCCH--HH-HHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             8888989999089987--99-9999999999998---5-----99--899997999989999999999966-99899974


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHH
Q ss_conf             77513377888999864977864267761015777653489734765788899999997-189389998548--743223
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRD  170 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~  170 (388)
                      +..+ ...   ......++|++.......   ... .+   ....+....+...+.++. ++.++++++...  ......
T Consensus        71 ~~~~-~~~---~~~~~~~iPvV~~~~~~~---~~~-~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~  139 (288)
T 2qu7_A           71 PVKS-KFQ---MKREWLKIPIMTLDRELE---STS-LP---SITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIG  139 (288)
T ss_dssp             CSSS-CCC---CCGGGGGSCEEEESCCCS---SCC-CC---EEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHH
T ss_pred             CCCC-HHH---HHHHHCCCCEEEEECCCC---CCC-CC---EEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             7322-789---999737998898403579---999-98---899672888999998777508740014426731025677


Q ss_pred             HHHHHHHHHHHCCCEEEEEEE----CC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             478999999863985998410----17-5433128999999984335764589996052078999999971530
Q T0528           171 GVAAFKEALAKTGATLATEEY----VP-TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~----~~-~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      -...|++++++.|..+.....    .. ....+.......++......+. .++...-..+.-.+..+...+.+
T Consensus       140 r~~g~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-aii~~~d~~a~g~~~al~~~g~~  212 (288)
T 2qu7_A          140 RKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIK-GIVATNHLLLLGALQAIKESEKE  212 (288)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCC-EEEECSHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             77899999998399878332686112344103455899999998643364-32246059999999999984999


No 51 
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=96.87  E-value=0.016  Score=31.66  Aligned_cols=202  Identities=11%  Similarity=0.046  Sum_probs=106.4

Q ss_pred             CEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             35899982466770--5678999999999999998557976985899999727889899999999998648851211477
Q T0528            18 DLKIALIYGKTGPL--EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        18 ~IkIG~~~p~sG~~--a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ...||++.+-+-|.  ..+-..+..++.-   ++.+.     |+.+-  +.++..++.. .+.+.+++.+.+|++++-..
T Consensus         4 s~~i~~~~~~~~p~~~~~~~~~~~~~i~~---~a~~~-----gy~~~--i~~~~~~~~~-~~~~~~~l~~~~vDGiIl~~   72 (287)
T 3bbl_A            4 SFMIGYSWTQTEPGQVNHILDQFLSSMVR---EAGAV-----NYFVL--PFPFSEDRSQ-IDIYRDLIRSGNVDGFVLSS   72 (287)
T ss_dssp             CCEEEECCCCCCTTCSCCTHHHHHHHHHH---HHHHT-----TCEEE--ECCCCSSTTC-CHHHHHHHHTTCCSEEEECS
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHC-----CCEEE--EEECCCCHHH-HHHHHHHHHHCCCCEEEEEC
T ss_conf             69999981899955213889999999999---99987-----99999--9958999899-99999999838987899978


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-7189389998548--74322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~~  172 (388)
                      ... .......+.+.++|++......+   +.. .++   ...+....+...+.++ .++.++++++..+  ......-.
T Consensus        73 ~~~-~~~~~~~l~~~~iPvV~i~~~~~---~~~-~~~---V~~D~~~a~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~  144 (287)
T 3bbl_A           73 INY-NDPRVQFLLKQKFPFVAFGRSNP---DWD-FAW---VDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRL  144 (287)
T ss_dssp             CCT-TCHHHHHHHHTTCCEEEESCCST---TCC-CCE---EEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHH
T ss_pred             CCC-CHHHHHHHHHCCCCEEEECCCCC---CCC-CCE---EEECHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHH
T ss_conf             989-98999999977997999887688---899-878---9838999999999999984996140167997552889999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             8999999863985998410175433128---999999984335764589996052078999999971530
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ..|++++++.|..+...... ....++.   .....+....++.....++.....-+...+..+.+.+..
T Consensus       145 ~gf~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~  213 (287)
T 3bbl_A          145 QGYLEAMQTAQLPIETGYIL-RGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLT  213 (287)
T ss_dssp             HHHHHHHHHTTCCCCGGGEE-ECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             99999999749973212023-5677277799999999874766797199988769999999999985999


No 52 
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=96.71  E-value=0.021  Score=30.92  Aligned_cols=200  Identities=12%  Similarity=0.059  Sum_probs=106.2

Q ss_pred             CCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5683589998246-67705678999999999999998557976985899999-727889899999999998648851211
Q T0528            15 AADDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVIT-KDDQSKPDLSKAALAEAYQDDGADIAI   92 (388)
Q Consensus        15 a~~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~-~D~~~~~~~a~~~~~~li~~~~v~~i~   92 (388)
                      .+.+=.||+++|. +++  .+ ..+.+|++..+++.        |+.+-+.. .++..+.+...+..+.|... ++++++
T Consensus         5 ~~~~~~Igliip~~~~~--~~-~~l~~gi~~~~~~~--------g~~~~~~~~~~~~~~~e~~~~~i~~l~~~-~vdgiI   72 (290)
T 2rgy_A            5 TQQLGIIGLFVPTFFGS--YY-GTILKQTDLELRAV--------HRHVVVATGCGESTPREQALEAVRFLIGR-DCDGVV   72 (290)
T ss_dssp             ---CCEEEEECSCSCSH--HH-HHHHHHHHHHHHHT--------TCEEEEECCCSSSCHHHHHHHHHHHHHHT-TCSEEE
T ss_pred             CCCCCEEEEECCCCCCH--HH-HHHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf             79999799991898798--99-99999999999986--------99899996889864199999999999838-998899


Q ss_pred             --CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHH
Q ss_conf             --47751337788899986497786426776101577765348973476578889999999-7189389998548--743
Q T0528            93 --GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAF  167 (388)
Q Consensus        93 --G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~  167 (388)
                        +...+   ......+.+.++|++......+   . ...+   ....+....+...+.++ .++.++++++...  ...
T Consensus        73 i~~~~~~---~~~~~~l~~~~ipvV~i~~~~~---~-~~~~---~V~~D~~~~~~~a~~~L~~~G~r~i~~l~~~~~~~~  142 (290)
T 2rgy_A           73 VISHDLH---DEDLDELHRMHPKMVFLNRAFD---A-LPDA---SFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASD  142 (290)
T ss_dssp             ECCSSSC---HHHHHHHHHHCSSEEEESSCCT---T-SGGG---EECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHH
T ss_pred             EECCCCC---HHHHHHHHHCCCCEEEEECCCC---C-CCCC---EEEECHHHHHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf             9667699---8999999963996899941578---8-8676---898341888999999999829943630578876611


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             223478999999863985998410175433128---999999984335764589996052078999999971530
Q T0528           168 GRDGVAAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       168 g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .+.-...|...+++.+..+....... ...+..   .....+....+ .+. .++........-.+..+.+.+..
T Consensus       143 ~~~R~~gf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~a~g~~~al~~~g~~  214 (290)
T 2rgy_A          143 NVERLDGFFDELARHGIARDSVPLIE-SDFSPEGGYAATCQLLESKA-PFT-GLFCANDTMAVSALARFQQLGIS  214 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCGGGSCEEE-CCSSHHHHHHHHHHHHHHTC-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHCCC-CCCCHHHHHHHHHHHCCCCC-CCC-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf             67765102203877099754100235-68898999999974201267-876-58863725554159999987998


No 53 
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.54  E-value=0.028  Score=30.24  Aligned_cols=205  Identities=10%  Similarity=-0.015  Sum_probs=102.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf             5683589998246677056789999999999999985579769858999997278898999999999986488512-114
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIG   93 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G   93 (388)
                      ...+-.||+++|.-+.  .+-..+..|++-+.++   .|       ..+++++...+++...+..+.|... ++++ |+-
T Consensus         4 ~~kt~~Igli~~~~~~--~f~~~l~~gi~~~a~~---~g-------~~l~~~~~~~~~~~~~~~~~~l~~~-~vdgiIv~   70 (289)
T 1dbq_A            4 VNHTKSIGLLATSSEA--AYFAEIIEAVEKNCFQ---KG-------YTLILGNAWNNLEKQRAYLSMMAQK-RVDGLLVM   70 (289)
T ss_dssp             ----CEEEEEESCTTS--HHHHHHHHHHHHHHHH---HT-------CEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEEE
T ss_pred             CCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---CC-------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             8999979999599989--8999999999999998---69-------9999996899989999999998845-87668842


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHH--HHH
Q ss_conf             77513377888999864977864267761015777653489734765788899999997-189389998548743--223
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAF--GRD  170 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~--g~~  170 (388)
                      +..... ..........++|++.......   ..+.   ......+..........++. ++.++++++......  ...
T Consensus        71 ~~~~~~-~~~~~~~~~~~ipvV~~~~~~~---~~~~---~~~v~~d~~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~  143 (289)
T 1dbq_A           71 CSEYPE-PLLAMLEEYRHIPMVVMDWGEA---KADF---TDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAG  143 (289)
T ss_dssp             CSCCCH-HHHHHHHHTTTSCEEEEECSSC---CSSS---CEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CH
T ss_pred             CCCCCH-HHHHHHHHHCCCCEEEEEECCC---CCCC---CEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             655650-5789998606996899850368---8998---84997079999999999998659966999637631247899


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             4789999998639859984101754331289999999843357-645899960520789999999715300
Q T0528           171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDK-PGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      ....++...++.+....... ......+.......+....... ....++...-..+...+..+.+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~~~~~~l~~~g~~v  213 (289)
T 1dbq_A          144 RLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRV  213 (289)
T ss_dssp             HHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf             99766789998089977200-23576777778999999984599984588557899999999999869999


No 54 
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=96.54  E-value=0.028  Score=30.22  Aligned_cols=199  Identities=14%  Similarity=0.055  Sum_probs=101.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211-47
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GT   94 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~   94 (388)
                      ...=+||+++|-...  .+-.++.+|++.+++.   .     |+  ++++.++..+++.-.+..+.+... ++++++ .+
T Consensus         5 ~~S~~Igvivp~~~~--~~~~~li~gi~~~~~~---~-----gy--~~~i~~s~~~~~~e~~~i~~l~~~-~vdgiIi~~   71 (276)
T 3jy6_A            5 QSSKLIAVIVANIDD--YFSTELFKGISSILES---R-----GY--IGVLFDANADIEREKTLLRAIGSR-GFDGLILQS   71 (276)
T ss_dssp             CCCCEEEEEESCTTS--HHHHHHHHHHHHHHHT---T-----TC--EEEEEECTTCHHHHHHHHHHHHTT-TCSEEEEES
T ss_pred             CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             789999999299989--8999999999999998---6-----99--999995899989999999999967-998999945


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-7189389998548743223478
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVA  173 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~  173 (388)
                      ....   .....+.+.++|++.......   . ...+   ....+..........++ .++.++++++..+..+......
T Consensus        72 ~~~~---~~~~~l~~~~iPvV~i~~~~~---~-~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~~  141 (276)
T 3jy6_A           72 FSNP---QTVQEILHQQMPVVSVDREMD---A-CPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQE  141 (276)
T ss_dssp             SCCH---HHHHHHHTTSSCEEEESCCCT---T-CSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHH
T ss_pred             CCCH---HHHHHHHHCCCCEEEECCCCC---C-CCCC---EEEECHHHHHHHHCCCHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf             7895---999999975998999277788---8-8988---8995469975540210112687313586168544305777


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             99999986398599841017543312899999998433576-4589996052078999999971530
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .++..... ..+.. ...+.....+.....+.+++.....+ ...+++..-..+...+..+.+.+..
T Consensus       142 r~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~g~~~~l~~~gl~  206 (276)
T 3jy6_A          142 RYRGILAA-AQDVD-VLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLI  206 (276)
T ss_dssp             HHHHHHTT-CSEEE-EEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred             HHHHHHHH-HHHCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             78999999-87569-7521235676788999999876421232212224489999999999985999


No 55 
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.53  E-value=0.028  Score=30.18  Aligned_cols=204  Identities=12%  Similarity=0.018  Sum_probs=106.3

Q ss_pred             CCCCEEEEEEECCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             56835899982466770---567899999999999999855797698589999972788989999999999864885121
Q T0528            15 AADDLKIALIYGKTGPL---EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~---a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      .+.+-.||+++|.....   ..+-..+..|++.+.+   +.|     +++  ++.++..+++.-.+..+.+... +++++
T Consensus         5 ~~~t~~Igviip~~~~~~~~npf~~~~~~~i~~~~~---~~g-----y~~--~l~~~~~~~~~~~~~~~~l~~~-~vdgi   73 (292)
T 3k4h_A            5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAH---VEG-----YAL--YMSTGETEEEIFNGVVKMVQGR-QIGGI   73 (292)
T ss_dssp             --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHH---HTT-----CEE--EECCCCSHHHHHHHHHHHHHTT-CCCEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH---HCC-----CEE--EEEECCCCHHHHHHHHHHHHCC-CCCEE
T ss_conf             887797999976776564448899999999999999---859-----999--9983899889999999998637-86657


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHH--
Q ss_conf             147751337788899986497786426776101577765348973476578889999999-71893899985487432--
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFG--  168 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g--  168 (388)
                      +-.... ........+.+.++|++.......   ....   +.....+....+...+.++ .++.++++++.......  
T Consensus        74 Iv~~~~-~~~~~~~~l~~~~~pvV~~~~~~~---~~~~---~~~V~~d~~~~~~~a~~~L~~~g~~~i~~i~~~~~~~~~  146 (292)
T 3k4h_A           74 ILLYSR-ENDRIIQYLHEQNFPFVLIGKPYD---RKDE---ITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVT  146 (292)
T ss_dssp             EESCCB-TTCHHHHHHHHTTCCEEEESCCSS---CTTT---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHH
T ss_pred             EEECCC-CCCHHHHHHHHCCCCCCCCCCCCC---CCCC---CEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf             653023-431233345532532233465544---4655---112022036888887777765315406999437775066


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH---HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             234789999998639859984101754331289---99999984335764589996052078999999971530
Q T0528           169 RDGVAAFKEALAKTGATLATEEYVPTTTTDFTA---VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       169 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~---~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ..-...++..+++.+....... ....+.+...   .+.++....+ .+. .++...-..+...+..+.+.+..
T Consensus       147 ~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~A~g~~~~l~~~g~~  217 (292)
T 3k4h_A          147 RDRLAGMSDALKLADIVLPKEY-ILHFDFSRESGQQAVEELMGLQQ-PPT-AIMATDDLIGLGVLSALSKKGFV  217 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCCCGGG-EEECCSSHHHHHHHHHHHHTSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHCCC-CCC-EEEECCCCCCCHHHHHHHHCCCC
T ss_conf             6554554110343024665200-22333222479999999994699-997-89745852110027999980887


No 56 
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.53  E-value=0.028  Score=30.18  Aligned_cols=194  Identities=10%  Similarity=0.041  Sum_probs=98.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf             358999824667705678999999999999998557976985899999727889899999999998648851211-4775
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSS   96 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~   96 (388)
                      +=.||+++|--..  .+-..+.+|++-+.++   .     |.++  .+.++..+... .+...+++... +++++ .+..
T Consensus         5 t~~Igvivp~~~~--pf~~~~l~gi~~~a~~---~-----g~~l--~v~~~~~~~~~-~~~~~~l~~~~-vdgiIi~~~~   70 (280)
T 3gyb_A            5 TQLIAVLIDDYSN--PWFIDLIQSLSDVLTP---K-----GYRL--SVIDSLTSQAG-TDPITSALSMR-PDGIIIAQDI   70 (280)
T ss_dssp             CCEEEEEESCTTS--GGGHHHHHHHHHHHGG---G-----TCEE--EEECSSSSCSS-SCHHHHHHTTC-CSEEEEESCC
T ss_pred             CCEEEEECCCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHH-HHHHHHHHHHC-CCEEEECCCC
T ss_conf             2879999188966--8999999999999998---6-----9989--99968999899-99999999719-8535512530


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHH
Q ss_conf             1337788899986497786426776101577765348973476578889999999-718938999854874322347899
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAFGRDGVAAF  175 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~g~~~~~~~  175 (388)
                      ..      ....+...|++.......   .....++   ...+....+...+.++ .++.++++++..+....+.-...|
T Consensus        71 ~~------~~~~~~~~p~V~~~~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~i~~~~~~~~~~~~R~~gf  138 (280)
T 3gyb_A           71 PD------FTVPDSLPPFVIAGTRIT---QASTHDS---VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESF  138 (280)
T ss_dssp             --------------CCCEEEESCCCS---SSCSTTE---EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHH
T ss_pred             HH------HHHHCCCCCEEEECCCCC---CCCCCCC---CCHHHHHHHHHHCCHHHHCCCCCCCEECCCCHHHHHHHHHH
T ss_conf             12------666414786265234468---8766553---21145543331000001102232200012320235667777


Q ss_pred             HHHHHHCCCEEEEEEECCCCCCC-HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             99998639859984101754331-28999999984335764589996052078999999971530
Q T0528           176 KEALAKTGATLATEEYVPTTTTD-FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       176 ~~~~~~~g~~vv~~~~~~~~~~d-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ++++++.|.+............+ -......+....++ +. .++......+...+..+.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~~~~~~l~~~g~~  201 (280)
T 3gyb_A          139 EATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPE-VT-AIFSSNDITAIGALGAARELGLR  201 (280)
T ss_dssp             HHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC-EEEECCCHHHHHHHHHHHHHHHH
T ss_conf             78999974301211233334377765566777651368-63-55312533113578998876330


No 57 
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=96.50  E-value=0.03  Score=30.07  Aligned_cols=92  Identities=8%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf             58999824667705678999999999999998557976985899999727889899999999998648851211-47751
Q T0528            19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSS   97 (388)
Q Consensus        19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S   97 (388)
                      -+|++++|--..  .+-..+..|++-+.++.        |.++.+...++..|+..-.+.+++++.+ ++++++ .+..+
T Consensus         2 ~~~avv~~~~~n--pf~~~i~~gi~~~a~~~--------g~~l~i~~~~~~~d~~~q~~~l~~~~~~-~vdgii~~~~~~   70 (288)
T 1gud_A            2 AEYAVVLKTLSN--PFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPLSS   70 (288)
T ss_dssp             CEEEEEESCSSS--HHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCSSS
T ss_pred             CEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf             359999798888--89999999999999974--------9989999678989999999999999975-998576425433


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf             337788899986497786426776
Q T0528            98 AAALADLPVAEENKKILIVEPAVA  121 (388)
Q Consensus        98 ~~~~~~~~~~~~~~vp~i~~~a~~  121 (388)
                      .........+.+.++|++......
T Consensus        71 ~~~~~~~~~~~~~gipvV~~d~~~   94 (288)
T 1gud_A           71 VNLVMPVARAWKKGIYLVNLDEKI   94 (288)
T ss_dssp             STTHHHHHHHHHTTCEEEEESSCC
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCC
T ss_conf             211489999997199176237776


No 58 
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.32  E-value=0.038  Score=29.43  Aligned_cols=199  Identities=11%  Similarity=0.039  Sum_probs=105.6

Q ss_pred             CCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             83589998246-67705678999999999999998557976985899999727889899999999998648851211477
Q T0528            17 DDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        17 ~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      .+=+||+++|- +.+   +-..+.+|++-+.++   .     |+  ++++.++..+++.-.+.+++|+.+ ++++++-..
T Consensus        15 ks~tIGvivp~l~~~---~~~~l~~gi~~~~~~---~-----G~--~l~l~~s~~~~~~e~~~l~~l~~~-~vdgiii~~   80 (289)
T 2fep_A           15 KTTTVGVIIPDISSI---FYSELARGIEDIATM---Y-----KY--NIILSNSDQNMEKELHLLNTMLGK-QVDGIVFMG   80 (289)
T ss_dssp             -CCEEEEEESCTTSH---HHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred             HHCEEEEECCCCCCH---HHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf             349999996878898---999999999999998---6-----99--899996899989999999999866-998898537


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC--HHHH-HH
Q ss_conf             513377888999864977864267761015777653489734765788899999997-1893899985487--4322-34
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY--AFGR-DG  171 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~--~~g~-~~  171 (388)
                      .... ........+.++|++.......    ....++   ...+........+.++. ++.+++.++..+.  .... ..
T Consensus        81 ~~~~-~~~~~~~~~~~~~vv~~~~~~~----~~~~~~---V~~D~~~~~~~~~~~l~~~G~r~i~~i~~~~~~~~~~~~~  152 (289)
T 2fep_A           81 GNIT-DEHVAEFKRSPVPIVLAASVEE----QEETPS---VAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKK  152 (289)
T ss_dssp             SCCC-HHHHHHHHHSSSCEEEESCCCT----TCCSCE---EECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTH
T ss_pred             CCCC-HHHHHHHHHCCCCEEEEECCCC----CCCCCE---EEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf             7688-7999999864997899612457----899988---9987899999999999973995145741675665114556


Q ss_pred             HHHHHHHHHHCCCEEEEE--EECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             789999998639859984--10175433128999999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATE--EYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~--~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...++.+.++.|......  ...+....+-.....++.+..+ .+..++ +..-..+...+..+...+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~-~~~d~~a~g~~~~l~~~g~~  220 (289)
T 2fep_A          153 LQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDK-KPTAIL-SATDEMALGIIHAAQDQGLS  220 (289)
T ss_dssp             HHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSS-CCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCC-CCCEEE-ECCHHHHHHHHHHHHHCCCC
T ss_conf             678999999849997721377334320469999999995699-986799-77889999999999981999


No 59 
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.27  E-value=0.04  Score=29.27  Aligned_cols=204  Identities=13%  Similarity=0.010  Sum_probs=108.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      ..-.||++.+.......+-.....+.+-....   .+       ..+...+...++.......+.++...-..+|+-+. 
T Consensus        60 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~giii~~~-  128 (338)
T 3dbi_A           60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE---KG-------RQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR-  128 (338)
T ss_dssp             CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH---TT-------CEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS-
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH---HC-------CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCC-
T ss_conf             87479999730455551399999999999997---18-------47873257887788999999999559887997588-


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHH-HHHHHHHCCCEEEEEECC--CHHHHHHHH
Q ss_conf             13377888999864977864267761015777653489734765788899-999997189389998548--743223478
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAIS-NAVAIGKQGVTIATLAQD--YAFGRDGVA  173 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d--~~~g~~~~~  173 (388)
                      ..............++|++........    ...+   ....++...+.. ...++.++.++++++...  ......-..
T Consensus       129 ~~~~~~~~~~~~~~~~pvV~~~~~~~~----~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~  201 (338)
T 3dbi_A          129 FLSVDEIDDIIDAHSQPIMVLNRRLRK----NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA  201 (338)
T ss_dssp             SSCHHHHHHHHHHCSSCEEEESSCCSS----SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCCC----CCCC---EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             777588999998549978993676667----7785---253238899999999999849985999978999866999999


Q ss_pred             HHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             99999986398599841017--54331289999999843357645899960520789999999715300
Q T0528           174 AFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      .|...+++.|..+.......  ....+-...+.++....+ .+. .+++.....+...+..+.+.+.+.
T Consensus       202 gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~a~~~~~~l~~~gl~v  268 (338)
T 3dbi_A          202 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGA-KFS-ALVASNDDMAIGAMKALHERGVAV  268 (338)
T ss_dssp             HHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTC-CCS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC-CCE-EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf             9999999839998831476157646779999999983488-864-999678999999999999759998


No 60 
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z}
Probab=96.09  E-value=0.05  Score=28.73  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      .+.+-.||+++|-...  .+-..+.+|++-+.++   .     |+  ++++.++..+++.-.+..+.+. ..+++.++-.
T Consensus         5 ~~~s~~Iglivp~~~n--pf~~~l~~gi~~~a~~---~-----G~--~l~v~~~~~d~~~~~~~~~~~~-~~~vdgii~~   71 (285)
T 3c3k_A            5 TAKTGMLLVMVSNIAN--PFCAAVVKGIEKTAEK---N-----GY--RILLCNTESDLARSRSCLTLLS-GKMVDGVITM   71 (285)
T ss_dssp             --CCCEEEEEESCTTS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHTHHHH-TTCCSEEEEC
T ss_pred             CCCCCEEEEECCCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEC
T ss_conf             8999989999398978--8999999999999998---5-----99--8999978999899999999986-0784258511


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECC--CHHHHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-189389998548--7432234
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQD--YAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d--~~~g~~~  171 (388)
                      ........+..+  ..++|.+......+   . ...+   ....+....+...+.++. ++.++++++...  ....+.-
T Consensus        72 ~~~~~~~~~~~~--~~~~p~V~~~~~~~---~-~~~~---~V~~D~~~~~~~a~~~l~~~G~r~i~~i~~~~~~~~~~~R  142 (285)
T 3c3k_A           72 DALSELPELQNI--IGAFPWVQCAEYDP---L-STVS---SVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHR  142 (285)
T ss_dssp             CCGGGHHHHHHH--HTTSSEEEESSCCT---T-SSSC---EEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHH
T ss_pred             CCCHHHHHHHHH--HHCCCEEEECCCCC---C-CCCC---EEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH
T ss_conf             221048999998--61599897346688---8-8998---8997749999999999997399755662574345247777


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH---HHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             78999999863985998410175433128999---999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVG---QRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|++++++.+..+........  .+.....   ..+....+ .+ ..+++.....+...+..+.+.+..
T Consensus       143 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-~~-~aii~~~d~~a~~~~~~l~~~g~~  209 (285)
T 3c3k_A          143 ESGYLNRLKFHGLDYSRISYAEN--LDYMAGKLATFSLLKSAV-KP-DAIFAISDVLAAGAIQALTESGLS  209 (285)
T ss_dssp             HHHHHHHHHHHTCCCCEEEECSS--SSHHHHHHHHHHHHSSSS-CC-SEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCC-CC-CEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             78999999985998531101220--246667899998873378-98-757854779999999999984998


No 61 
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=96.05  E-value=0.052  Score=28.60  Aligned_cols=198  Identities=11%  Similarity=0.044  Sum_probs=98.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ...=.||++.+++.|+  + ..+.+|++-..++   .     |+.+-+...+  .+... .+.+++|+.. +++.++-..
T Consensus        10 ~~s~~Igvv~~~~~pf--~-~~l~~~i~~~a~~---~-----gy~l~v~~~~--~~~~e-~~~i~~l~~~-~vdgiIi~~   74 (289)
T 3k9c_A           10 ASSRLLGVVFELQQPF--H-GDLVEQIYAAATR---R-----GYDVMLSAVA--PSRAE-KVAVQALMRE-RCEAAILLG   74 (289)
T ss_dssp             ---CEEEEEEETTCHH--H-HHHHHHHHHHHHH---T-----TCEEEEEEEB--TTBCH-HHHHHHHTTT-TEEEEEEET
T ss_pred             CCCCEEEEEECCCCHH--H-HHHHHHHHHHHHH---C-----CCEEEEEECC--CCHHH-HHHHHHHHHC-CCCEEEEEC
T ss_conf             8999899995378769--9-9999999999998---6-----9989999489--88899-9999999970-975121102


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC-CHHHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-7189389998548-743223478
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD-YAFGRDGVA  173 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d-~~~g~~~~~  173 (388)
                      .+...... .... .++|++.......   ... .+   ....+....+...+.++ .++.++++++... ......-..
T Consensus        75 ~~~~~~~~-~~l~-~~iPvV~v~~~~~---~~~-~~---~V~~D~~~a~~~a~~~l~~~G~~~i~~~~~~~~~~~~~r~~  145 (289)
T 3k9c_A           75 TRFDTDEL-GALA-DRVPALVVARASG---LPG-VG---AVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRA  145 (289)
T ss_dssp             CCCCHHHH-HHHH-TTSCEEEESSCCS---STT-SE---EEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHH
T ss_pred             CCHHHHHH-HHHH-CCCCEEEECCCCC---CCC-CC---CCCCCCCCCCCHHHHHEECCCCCCEEEECCCCCCCHHHHHH
T ss_conf             30158899-8754-4477586324467---555-66---44565211110012210002353112101224653125778


Q ss_pred             HHHHHHHHCCCEEEEEEECCCC-CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             9999998639859984101754-33128999999984335764589996052078999999971530
Q T0528           174 AFKEALAKTGATLATEEYVPTT-TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .|.+++.+.|........+... .......+.++.+..+ .+. .++......+.-.+..+.+.+..
T Consensus       146 gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-ai~~~~d~~A~g~~~~l~~~gi~  210 (289)
T 3k9c_A          146 GFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPT-PPT-AVVAFNDRCATGVLDLLVRSGRD  210 (289)
T ss_dssp             HHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCC-HHHCCCHHHCCCCEEECCCCCCE
T ss_conf             898888763255421223456641367889999875035-751-33214102114420000146844


No 62 
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=95.93  E-value=0.059  Score=28.28  Aligned_cols=191  Identities=11%  Similarity=0.028  Sum_probs=95.6

Q ss_pred             CCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             83589998246-67705678999999999999998557976985899999727889899999999998648851211477
Q T0528            17 DDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        17 ~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      .+=+||+++|- +++  .+ ..+..|++-.+++   .|     .  ++++.+++.+.        +++.+.++++++-..
T Consensus         7 ~s~~Igvv~p~~~~~--~~-~~l~~~i~~~~~~---~g-----~--~~~~~~~~~~~--------~~l~~~~vdGlIi~~   65 (277)
T 3cs3_A            7 QTNIIGVYLADYGGS--FY-GELLEGIKKGLAL---FD-----Y--EMIVCSGKKSH--------LFIPEKMVDGAIILD   65 (277)
T ss_dssp             CCCEEEEEECSSCTT--TH-HHHHHHHHHHHHT---TT-----C--EEEEEESTTTT--------TCCCTTTCSEEEEEC
T ss_pred             CCCEEEEECCCCCCH--HH-HHHHHHHHHHHHH---CC-----C--EEEEECCHHHH--------HHHHHCCCCEEEEEC
T ss_conf             999899991899888--99-9999999999998---69-----9--89998185889--------999967999899954


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEEC--CCHHHHHHH
Q ss_conf             5133778889998649778642677610157776534897347657888999999-9718938999854--874322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQ--DYAFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~--d~~~g~~~~  172 (388)
                      .. ........+.+.++|++.......   . ..   +-....+....+...+.+ ..++.++++++..  +......-.
T Consensus        66 ~~-~~~~~~~~l~~~~ipvV~~~~~~~---~-~~---~~~V~~D~~~~~~~~~~~l~~~G~~~i~~l~~~~~~~~~~~R~  137 (277)
T 3cs3_A           66 WT-FPTKEIEKFAERGHSIVVLDRTTE---H-RN---IRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERL  137 (277)
T ss_dssp             TT-SCHHHHHHHHHTTCEEEESSSCCC---S-TT---EEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHH
T ss_pred             CC-CCHHHHHHHHHCCCCEEEECCCCC---C-CC---CCEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
T ss_conf             87-998999999974998999867767---7-89---9889966389999999999983995530166886554066776


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             899999986398599841017543312899999998433576458999605207899999997153
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      ..|++++++.|.+.... .-.....+......++.......+. .++...-..+.-.+..+...+.
T Consensus       138 ~gf~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-ai~~~~d~~a~gv~~al~~~g~  201 (277)
T 3cs3_A          138 AVSTRELTRFGIPYEII-QGDFTEPSGYAAAKKILSQPQTEPV-DVFAFNDEMAIGVYKYVAETNY  201 (277)
T ss_dssp             HHHHHHHHHTTCCEEEE-ECCSSHHHHHHHHHHHTTSCCCSSE-EEEESSHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHCCCCEEEE-CCCCCCCHHHHHHHHHHHCCCCCCE-EEECCCHHHHHHHHHHHHHCCC
T ss_conf             88999999859980552-1434511378999999844676534-6623785776424899997599


No 63 
>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=95.90  E-value=0.061  Score=28.20  Aligned_cols=197  Identities=11%  Similarity=-0.034  Sum_probs=110.0

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             35683589998246677056789999999999999985579769858999997278898999999999986488512114
Q T0528            14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG   93 (388)
Q Consensus        14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G   93 (388)
                      ..+.+=+||+++|.-..  .+-..+.+|++-++++   .|     .  ++++.++..++....+..+.+..+ ++++++-
T Consensus         4 ~~~~s~~Igvv~p~~~~--~f~~~l~~gi~~~~~~---~g-----~--~l~~~~~~~d~~~~~~~~~~l~~~-~~dgiIi   70 (277)
T 3e61_A            4 YKRKSKLIGLLLPDMSN--PFFTLIARGVEDVALA---HG-----Y--QVLIGNSDNDIKKAQGYLATFVSH-NCTGMIS   70 (277)
T ss_dssp             ------CEEEEESCTTS--HHHHHHHHHHHHHHHH---TT-----C--CEEEEECTTCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred             CCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCEEEEE
T ss_conf             88999989999398967--9999999999999998---49-----9--999997899989999999999865-9859995


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC-CCEEEEEECCCH--HHHH
Q ss_conf             7751337788899986497786426776101577765348973476578889999999718-938999854874--3223
Q T0528            94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQ-GVTIATLAQDYA--FGRD  170 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~--~g~~  170 (388)
                      ....  .........+.++|++......      ..   ......+..........++.++ .++++++.....  ....
T Consensus        71 ~~~~--~~~~~~~l~~~~ipvv~~~~~~------~~---~~~V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~  139 (277)
T 3e61_A           71 TAFN--ENIIENTLTDHHIPFVFIDRIN------NE---HNGISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQ  139 (277)
T ss_dssp             CGGG--HHHHHHHHHHC-CCEEEGGGCC------------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHH
T ss_pred             CCCC--CHHHHHHHHHCCCCEEEEECCC------CC---CCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             3642--1579999997599889972367------99---99798768999999999999779946999247666523777


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             4789999998639859984101754331289999999843357645899960520789999999715300
Q T0528           171 GVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      -...|...+++.++...........  ........+++..++    .+++..-.-+.-.+..+.+.+.+.
T Consensus       140 R~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----aIi~~~d~~A~g~~~al~~~G~~v  203 (277)
T 3e61_A          140 RVQGIKYILDQQRIDYKMLEATLLD--NDKKFIDLIKELSID----SIICSNDLLAINVLGIVQRYHFKV  203 (277)
T ss_dssp             HHHHHHHHHHC---CEEEEEGGGGG--SHHHHHHHHHHHTCC----EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHHCCCCC----EEEECCHHHHHCHHHHHHHCCCCC
T ss_conf             7899999999869983044301104--799999997436975----576253265405189999739988


No 64 
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=95.63  E-value=0.078  Score=27.56  Aligned_cols=196  Identities=11%  Similarity=-0.039  Sum_probs=96.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528            20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA   99 (388)
Q Consensus        20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~   99 (388)
                      +||+++|-.. ...+ ..+.+|++-+.+   +.     |+  +++..++..+++.-.+..+.++. .++++++=.... .
T Consensus         1 TIgvi~p~~~-~~f~-~~li~gi~~~a~---~~-----gy--~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~-~   66 (276)
T 2h0a_A            1 TVSVLLPFVA-TEFY-RRLVEGIEGVLL---EQ-----RY--DLALFPILSLARLKRYLENTTLA-YLTDGLILASYD-L   66 (276)
T ss_dssp             CEEEEECCSC-CHHH-HHHHHHHHHHHG---GG-----TC--EEEECCCCSCCCCC----------CCCSEEEEESCC-C
T ss_pred             CEEEEECCCC-CHHH-HHHHHHHHHHHH---HC-----CC--EEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCC-C
T ss_conf             9899988888-8899-999999999999---86-----99--89999789987999999999985-699799996555-7


Q ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHH-------HHHH
Q ss_conf             7788899986497786426776101577765348973476578889999999-7189389998548743-------2234
Q T0528           100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAF-------GRDG  171 (388)
Q Consensus       100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~-------g~~~  171 (388)
                      .......+...++|++......+      ..++   ...+....+.....++ .++.+++.++......       ...-
T Consensus        67 ~~~~~~~~~~~~iP~V~~d~~~~------~~~~---V~~D~~~a~~~a~~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~R  137 (276)
T 2h0a_A           67 TERFEEGRLPTERPVVLVDAQNP------RYDS---VYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAER  137 (276)
T ss_dssp             C------CCSCSSCEEEESSCCT------TSEE---EEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEECCC------CCCE---EEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             88999998744994899941468------8888---99557999999999998728962699824787501230489999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             7899999986398599841017543312899999998433576-4589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP-GKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|++++++.|.++... ....+..+.......+.+.....+ ...+++.....+...+..+.+.+..
T Consensus       138 ~~g~~~a~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~g~~~al~~~g~~  205 (276)
T 2h0a_A          138 MAGFQEALKEAGRPFSPD-RLYITRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLT  205 (276)
T ss_dssp             HHHHHHHHHHTTCCCCGG-GEEEECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             999889999829976720-01111112112677777777614788599867768898799999986999


No 65 
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.61  E-value=0.079  Score=27.50  Aligned_cols=200  Identities=12%  Similarity=0.019  Sum_probs=106.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+-.||++.|....  .+-..+..|++.+..+   .     |..+  ...+...++..-.+..+.+... ++++++-..
T Consensus        64 ~~t~~igvv~~~~~~--~~~~~~~~~i~~~~~~---~-----~~~l--~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~  130 (348)
T 3bil_A           64 SRSNTIGVIVPSLIN--HYFAAMVTEIQSTASK---A-----GLAT--IITNSNEDATTMSGSLEFLTSH-GVDGIICVP  130 (348)
T ss_dssp             ----CEEEEESCSSS--HHHHHHHHHHHHHHHH---T-----TCCE--EEEECTTCHHHHHHHHHHHHHT-TCSCEEECC
T ss_pred             CCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEECCCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             888879999688866--5889998899999874---3-----8545--6613775378999999998753-876599831


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEEC--CCHHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-718938999854--874322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQ--DYAFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~--d~~~g~~~~  172 (388)
                       +.............++|++........   ..   .......+......+....+ ..+.++++++..  +....+.-.
T Consensus       131 -~~~~~~~~~~l~~~~~p~v~~~~~~~~---~~---~~~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~R~  203 (348)
T 3bil_A          131 -NEECANQLEDLQKQGMPVVLVDRELPG---DS---TIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERL  203 (348)
T ss_dssp             -CGGGHHHHHHHHHC-CCEEEESSCCSC---C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHH
T ss_pred             -CCCHHHHHHHHHHCCCCEEEECCCCCC---CC---CCCEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf             -551077899998437986852244577---77---75132012125788999998753872699990897645799999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             8999999863985998410175433128999999984335764589996052078999999971530
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ..|.+++++.+..............+......++....+   . .+++.....+...+..+.+.+..
T Consensus       204 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p---~-ai~~~~d~~A~~~~~~l~~~gl~  266 (348)
T 3bil_A          204 EDFKAACANSKIGEQLVFLGGYEQSVGFEGATKLLDQGA---K-TLFAGDSMMTIGVIEACHKAGLV  266 (348)
T ss_dssp             HHHHHHHHHTTCCCCEEECCCSSHHHHHHHHHHHHHTTC---S-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---C-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf             999999985378870687168876899999999985799---7-89981648899999999986999


No 66 
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.54  E-value=0.084  Score=27.35  Aligned_cols=209  Identities=11%  Similarity=0.089  Sum_probs=102.2

Q ss_pred             CCCEEEEEEECCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             68358999824667705--6789999999999999985579769858999997278898999999999986488512114
Q T0528            16 ADDLKIALIYGKTGPLE--AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIG   93 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a--~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G   93 (388)
                      .++.|||++++ +|+..  .+.+....|++.+.++.        |.+++.  .+.. ++....+.+++++.+ +..+|++
T Consensus         2 ~~~~kva~v~d-~G~i~D~~fn~~~~~G~~~~~~~~--------gi~~~~--~e~~-~~~d~~~~~~~~a~~-g~dlIi~   68 (318)
T 2fqx_A            2 GGDFVVGMVTD-SGDIDDKSFNQQVWEGISRFAQEN--------NAKCKY--VTAS-TDAEYVPSLSAFADE-NMGLVVA   68 (318)
T ss_dssp             -CCCEEEEEES-SSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEE--EECC-SGGGHHHHHHHHHHT-TCSEEEE
T ss_pred             CCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHH--------CCEEEE--EECC-CHHHHHHHHHHHHHC-CCCEEEE
T ss_conf             98758999987-889998878999999999999986--------985999--9559-989999999999977-9998999


Q ss_pred             CCCCHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHH----HHHHHHHHC-CCEEEEEECC-CH
Q ss_conf             77513377888999864-97786426776101577765348973476578889----999999718-9389998548-74
Q T0528            94 TSSSAAALADLPVAEEN-KKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAI----SNAVAIGKQ-GVTIATLAQD-YA  166 (388)
Q Consensus        94 ~~~S~~~~~~~~~~~~~-~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~v~~i~~d-~~  166 (388)
                      +.. ....++..++.+. ++.++.......      ..+++........+.+.    +.+...+.+ .++++++... .+
T Consensus        69 ~g~-~~~~~~~~vA~~~Pd~~F~~~d~~~~------~~~Nv~~~~~~~~e~~ylaG~~Aa~~tk~~~~~~vG~vgg~~~p  141 (318)
T 2fqx_A           69 CGS-FLVEAVIETSARFPKQKFLVIDAVVQ------DRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELG  141 (318)
T ss_dssp             EST-TTHHHHHHHHHHCTTSCEEEESSCCC------SCTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCST
T ss_pred             ECC-CCCCHHHHHHHHCCCCEEEEEECCCC------CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
T ss_conf             076-53468899999889997999817768------88877666403556667999999987513785079950675650


Q ss_pred             HHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHH-HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCC
Q ss_conf             32234789999998639--85998410175433128-9999999843357645899960520789999999715300362
Q T0528           167 FGRDGVAAFKEALAKTG--ATLATEEYVPTTTTDFT-AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGI  243 (388)
Q Consensus       167 ~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~~d~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (388)
                      .-......|..-++..+  .++.....-...+++.. .....+...++|    +++........-.+.++++.+....+.
T Consensus       142 ~~~~~~~gF~~G~~~~np~~~v~~~~~g~~~d~~~~~~~a~~l~~~GaD----VI~~~ag~~~~gv~~aa~e~~~~~~~~  217 (318)
T 2fqx_A          142 MMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVN----VIFQVAGGTGNGVIKEARDRRLNGQDV  217 (318)
T ss_dssp             TTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCC----EEEEECGGGHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC----EEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             3788999999999974998439999658758848999999998736999----999878987734999999976246980


Q ss_pred             CCCCC
Q ss_conf             11235
Q T0528           244 ELSTG  248 (388)
Q Consensus       244 ~~~~~  248 (388)
                      ...+.
T Consensus       218 ~~IGv  222 (318)
T 2fqx_A          218 WVIGV  222 (318)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             89998


No 67 
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.24  E-value=0.11  Score=26.75  Aligned_cols=207  Identities=12%  Similarity=0.030  Sum_probs=104.9

Q ss_pred             CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             10035683589998246677056789999999999999985579769858999997278898999999999986488512
Q T0528            11 TAVHAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI   90 (388)
Q Consensus        11 ~~~~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~   90 (388)
                      .+...+.+-.||+++|-...  .+-..+.+|++...++   .     |..+  ++.++..++..- ..+.+++.+.++++
T Consensus         8 r~L~~~~s~~Igvi~p~~~~--~f~~~l~~gi~~~a~~---~-----gy~~--~~~~~~~~~~~~-~~~~~~l~~~~vdg   74 (303)
T 3kke_A            8 RALRHSRSGTIGLIVPDVNN--AVFADMFSGVQMAASG---H-----STDV--LLGQIDAPPRGT-QQLSRLVSEGRVDG   74 (303)
T ss_dssp             ---------CEEEEESCTTS--TTHHHHHHHHHHHHHH---T-----TCCE--EEEECCSTTHHH-HHHHHHHHSCSSSE
T ss_pred             HHHHHCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHHH-HHHHHHHHHCCCCE
T ss_conf             99874899989999598987--7999999999999997---6-----9989--999689997999-99999999589788


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCH--H
Q ss_conf             1147751337788899986497786426776101577765348973476578889999999-718938999854874--3
Q T0528            91 AIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYA--F  167 (388)
Q Consensus        91 i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~--~  167 (388)
                      ++-........ ........++|++......+     ...+   ....++...+...+.++ .++.++++++..+..  .
T Consensus        75 iIi~~~~~~~~-~~~~~~~~~iPvV~~d~~~~-----~~~~---~V~~d~~~~~~~~~~~L~~~G~~~i~~l~~~~~~~~  145 (303)
T 3kke_A           75 VLLQRREDFDD-DMLAAVLEGVPAVTINSRVP-----GRVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDT  145 (303)
T ss_dssp             EEECCCTTCCH-HHHHHHHTTSCEEEESCCCT-----TCCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHH
T ss_pred             EEECCCCCCHH-HHHHHHHCCCCEEEECCCCC-----CCCC---EEEECHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
T ss_conf             98324568759-99999975998898168788-----8788---799635999999999999828772774268877745


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHH----CCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             22347899999986398599841017--5433128999999984----3357645899960520789999999715300
Q T0528           168 GRDGVAAFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDA----LKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       168 g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      .+.-...|.+.+++.|.++.......  ....+......++...    .++.+. .++...-....-.+..+.+.+...
T Consensus       146 ~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-av~~~~d~~a~g~~~~l~~~G~~i  223 (303)
T 3kke_A          146 AQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPT-AVVVASVNAAVGALSTALRLGLRV  223 (303)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999981997541332045667578999999999877752467986-899667688999999999839865


No 68 
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.04  E-value=0.12  Score=26.39  Aligned_cols=204  Identities=12%  Similarity=0.039  Sum_probs=107.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+-.||+++|..+.  .+-.....+++.+.+.   .     |.  .+...+...++.......+.+... +++.++-..
T Consensus        56 ~~~~~Igvi~~~~~~--~~~~~~~~~~~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~  122 (340)
T 1qpz_A           56 NHTKSIGLLATSSEA--AYFAEIIEAVEKNCFQ---K-----GY--TLILGNAWNNLEKQRAYLSMMAQK-RVDGLLVMC  122 (340)
T ss_dssp             TCCSEEEEEESCSCS--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred             CCCCEEEEEECCCCC--CCHHHHHHHHHHHHHH---C-----CC--EEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             888579999546667--4018999999999874---8-----95--899941554448999999999854-887489814


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH-HHHHHHHHHCCCEEEEEECCC--HHHHHHH
Q ss_conf             5133778889998649778642677610157776534897347657888-999999971893899985487--4322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA-ISNAVAIGKQGVTIATLAQDY--AFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~--~~g~~~~  172 (388)
                      .........-.....++|++........   ..   .......+..... .+...+..++.+++++|....  .....-.
T Consensus       123 ~~~~~~~~~~~~~~~~ip~v~i~~~~~~---~~---~~~~~~~d~~~~~~~~~~~L~~~G~~~i~~l~~~~~~~~~~~r~  196 (340)
T 1qpz_A          123 SEYPEPLLAMLEEYRHIPMVVMDWGEAK---AD---FTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRL  196 (340)
T ss_dssp             SCCCHHHHHHHHTTTTSCEEEEEESSCC---CS---SSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCC---CC---CCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf             6787277888876148877983367666---77---77445334688899999999975998599982885553178999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             8999999863985998410175--4331289999999843357645899960520789999999715300
Q T0528           173 AAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      ..|...+++.+..+........  ........+.++....++ +. .+++.....+...+..+.+.+...
T Consensus       197 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~A~~~~~~l~~~g~~i  264 (340)
T 1qpz_A          197 AGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHR-PT-AVFCGGDIMAMGALCAADEMGLRV  264 (340)
T ss_dssp             HHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSC-CS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCC-CE-EEEECCHHHHHHCCHHHHHCCCCC
T ss_conf             889999998599998221895434266799999999817999-80-899777099874022698739978


No 69 
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.00  E-value=0.12  Score=26.33  Aligned_cols=196  Identities=13%  Similarity=0.077  Sum_probs=105.0

Q ss_pred             CCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             035683589998246-6770567899999999999999855797698589999972788989999999999864885121
Q T0528            13 VHAADDLKIALIYGK-TGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        13 ~~a~~~IkIG~~~p~-sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      +-.+.+-.||+++|- +.   .+-..+.+|++-++++   .     |+.+ ++...+..++..-....+.+... +++.+
T Consensus         5 L~~~ks~~Igvi~p~~~~---~f~~~l~~gi~~~~~~---~-----gy~~-~l~~~~~~~~~~~~~~i~~l~~~-~vdgi   71 (277)
T 3hs3_A            5 LYQKKSKMIGIIIPDLNN---RFYAQIIDGIQEVIQK---E-----GYTA-LISFSTNSDVKKYQNAIINFENN-NVDGI   71 (277)
T ss_dssp             ---CCCCEEEEEESCTTS---HHHHHHHHHHHHHHHH---T-----TCEE-EEEECSSCCHHHHHHHHHHHHHT-TCSEE
T ss_pred             CCCCCCCEEEEEECCCCC---HHHHHHHHHHHHHHHH---C-----CCEE-EEEECCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf             015878889999299878---8999999999999998---4-----9989-99958999999999999999867-96389


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCH--HHH
Q ss_conf             147751337788899986497786426776101577765348973476578889999999718938999854874--322
Q T0528            92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGVTIATLAQDYA--FGR  169 (388)
Q Consensus        92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--~g~  169 (388)
                      +-.....      +.....++|++.......   ...    +.....+..........++.+++++++++..+..  ..+
T Consensus        72 i~~~~~~------~~~~~~~iPvV~~~~~~~---~~~----~~~V~~d~~~a~~~a~~~l~~~~~~i~~~~~~~~~~~~~  138 (277)
T 3hs3_A           72 ITSAFTI------PPNFHLNTPLVMYDSANI---NDD----IVRIVSNNTKGGKESIKLLSKKIEKVLIQHWPLSLPTIR  138 (277)
T ss_dssp             EEECCCC------CTTCCCSSCEEEESCCCC---CSS----SEEEEECHHHHHHHHHHTSCTTCCEEEEEESCTTSHHHH
T ss_pred             EECCCCC------CHHHHCCCCEEEECCCCC---CCC----CCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             9434322------047765998899725578---899----768996569999888777644872699982662100467


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             3478999999863985998410175433128999999984335764589996052078999999971530
Q T0528           170 DGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       170 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      .....+.......+.........  .... .....++....++ +. .++...-..+...+..+.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~-~~-ai~~~~d~~A~~~~~al~~~g~~  203 (277)
T 3hs3_A          139 ERIEAMTAEASKLKIDYLLEETP--ENNP-YISAQSALNKSNQ-FD-AIITVNDLYAAEIIKEAKRRNLK  203 (277)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECC--SSCH-HHHHHHHHHTGGG-CS-EEECSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECC--CCCH-HHHHHHHHHCCCC-CC-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf             77678998864347530132035--5448-9999999854789-98-89964858888798999974987


No 70 
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=93.26  E-value=0.29  Score=24.16  Aligned_cols=202  Identities=9%  Similarity=0.064  Sum_probs=106.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+-.||+++|...  ..+-.++..|++-+.++   .     |.  ++++.+...++....+....++.+ +++.++-..
T Consensus         6 ~rs~~Igvi~~~~~--~~f~~~l~~gi~~~~~~---~-----G~--~~~l~~~~~~~~~~~~~i~~~~~~-~vd~ii~~~   72 (291)
T 3egc_A            6 KRSNVVGLIVSDIE--NVFFAEVASGVESEARH---K-----GY--SVLLANTAEDIVREREAVGQFFER-RVDGLILAP   72 (291)
T ss_dssp             -CCCEEEEEESCTT--SHHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred             CCCCEEEEEECCCC--CHHHHHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf             99898999949998--88999999999999998---6-----99--899996899979999999999975-986899857


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-71893899985487--4322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~g~~~~  172 (388)
                      +.. ...........++|++.......   .    +.......+........+.++ .++.++++++..+.  .....-.
T Consensus        73 ~~~-~~~~~~~~~~~~~p~v~~~~~~~---~----~~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~R~  144 (291)
T 3egc_A           73 SEG-EHDYLRTELPKTFPIVAVNRELR---I----PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERL  144 (291)
T ss_dssp             CSS-CCHHHHHSSCTTSCEEEESSCCC---C----TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHH
T ss_pred             CCC-CHHHHHHHHHCCCCEEEECCCCC---C----CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf             656-78999997531896899413346---8----999889855799999999999977995699952764330588999


Q ss_pred             HHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             89999998639859984101--754331289999999843357645899960520789999999715300
Q T0528           173 AAFKEALAKTGATLATEEYV--PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~--~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      ..|.+.+++.|.........  +...........++....+ .+.. +++..-..+.-.+..+.+.+.+.
T Consensus       145 ~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~a-i~~~~D~~A~g~~~al~~~g~~i  212 (291)
T 3egc_A          145 KGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGAD-RPTA-LLTSSHRITEGAMQALNVLGLRY  212 (291)
T ss_dssp             HHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-C-CCSE-EEESSHHHHHHHHHHHHHHTCCB
T ss_pred             HHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCC-CCCE-EEECCHHHHHHHHHHHHHCCCCC
T ss_conf             99999999869996541142477530689999999985578-8642-33157899999999999859988


No 71 
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.01  E-value=0.31  Score=23.93  Aligned_cols=201  Identities=13%  Similarity=0.101  Sum_probs=106.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      ..-.||++.|....  .+-..+..+++-..+   +.     |+.+.  ......++.......+.+.......+++.+..
T Consensus        69 ~~~~I~~i~p~~~~--~~~~~~~~~~~~~~~---~~-----g~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~  136 (355)
T 3e3m_A           69 RSGFVGLLLPSLNN--LHFAQTAQSLTDVLE---QG-----GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDG  136 (355)
T ss_dssp             --CEEEEEESCSBC--HHHHHHHHHHHHHHH---HT-----TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEEECCCCC--CHHHHHHHHHHHHHH---CC-----CCEEE--EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             78779999577654--212343210022343---06-----85034--30245641356689999986266642223465


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCC---HHHHHHH
Q ss_conf             133778889998649778642677610157776534897347657888999999-971893899985487---4322347
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQDY---AFGRDGV  172 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~---~~g~~~~  172 (388)
                      ..  ..........++|++.......   . ..   ......+....+...+.+ +.++.++++++....   .....-.
T Consensus       137 ~~--~~~~~~~~~~~~p~v~i~~~~~---~-~~---~~~V~~d~~~~~~~a~~~L~~~G~r~i~~l~~~~~~~~~~~~R~  207 (355)
T 3e3m_A          137 HT--EQTIRLLQRASIPIVEIWEKPA---H-PI---GHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARR  207 (355)
T ss_dssp             CC--HHHHHHHHHCCSCEEEESSCCS---S-CS---SEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHH
T ss_pred             CC--HHHHHHHHHCCCCEEEEECCCC---C-CC---CCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             55--8999999962798488623567---8-98---98898777999999999999769964999737876653178998


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             8999999863985998410175433128---9999999843357645899960520789999999715300
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      ..|+..++..|.+............+..   ..........+. +. .+++.....+...+..+.+.+...
T Consensus       208 ~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-ai~~~~d~~a~g~~~al~~~gl~i  276 (355)
T 3e3m_A          208 AGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPD-TD-CIFCVSDMPAFGLLSRLKSIGVAV  276 (355)
T ss_dssp             HHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CC-EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf             6169999985999535440244542202488876555403899-84-899778399999999999859999


No 72 
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.57  E-value=0.47  Score=22.86  Aligned_cols=201  Identities=13%  Similarity=0.063  Sum_probs=103.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      .....|+++.|.....  +-.....+++-+.    ...    |+  .+.......++..-......+.......+|+-+.
T Consensus        66 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~----~~~----~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~Ii~~~  133 (344)
T 3kjx_A           66 NRVNLVAVIIPSLSNM--VFPEVLTGINQVL----EDT----EL--QPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL  133 (344)
T ss_dssp             SCCSEEEEEESCSSSS--SHHHHHHHHHHHH----TSS----SS--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEEEECCCCCCC--CCHHHHHHHHHHH----HHH----HC--CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             8760677623544453--2023331333422----100----00--1110112354212589999999538851454310


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCHH---HHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-7189389998548743---2234
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYAF---GRDG  171 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~~---g~~~  171 (388)
                      .  ............++|++.......    ...   .-....+....+...+.++ ..+.++++++......   ...-
T Consensus       134 ~--~~~~~~~~l~~~~ip~v~i~~~~~----~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~R  204 (344)
T 3kjx_A          134 E--HSEAARAMLDAAGIPVVEIMDSDG----KPV---DAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKR  204 (344)
T ss_dssp             C--CCHHHHHHHHHCSSCEEEEEECSS----CCS---SEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHH
T ss_pred             C--CCHHHHHHHHCCCCCEEEEEECCC----CCC---CCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             2--310134443116886278840246----888---8777531899999999999983998641006666556216778


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC--CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             789999998639859984101754--33128999999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|++++++.|.++.....+..+  ..+-......+....+. + ..+++....-+...+..+...+..
T Consensus       205 ~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~ai~~~~d~~A~~~~~~l~~~gl~  272 (344)
T 3kjx_A          205 FEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPD-L-DFLYYSNDMIAAGGLLYLLEQGID  272 (344)
T ss_dssp             HHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTT-C-CEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-C-EEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             8888989997298632110001132212331102232025654-1-245326721567899999986998


No 73 
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=91.08  E-value=0.53  Score=22.56  Aligned_cols=204  Identities=13%  Similarity=0.062  Sum_probs=87.8

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS   96 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~   96 (388)
                      ..-+||+++|..............-++...+..+       ...+.+.......+.+.  ....+++...+++.++-...
T Consensus        67 ~s~~Igvv~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dgiIi~~~  137 (366)
T 3h5t_A           67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-------DTQLTLIPASPASSVDH--VSAQQLVNNAAVDGVVIYSV  137 (366)
T ss_dssp             -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-------SCEEEEEECCCCTTCCH--HHHHHHHHTCCCSCEEEESC
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCEEEEECCCCCHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf             9985999976654333221267889999999986-------35855875213320478--99999886414565421133


Q ss_pred             CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCCH---------
Q ss_conf             1337788899986497786426776101577765348973476578889999999-718938999854874---------
Q T0528            97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDYA---------  166 (388)
Q Consensus        97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~---------  166 (388)
                      . ............++|++.......    ....++   ...+........+.++ ..+.++++++.....         
T Consensus       138 ~-~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~---v~~D~~~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~~~~  209 (366)
T 3h5t_A          138 A-KGDPHIDAIRARGLPAVIADQPAR----EEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVT  209 (366)
T ss_dssp             C-TTCHHHHHHHHHTCCEEEESSCCS----CTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECC
T ss_pred             C-CCCHHHHHHHHCCCCCCCCCCCCC----CCCCCC---CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH
T ss_conf             3-220356666512787423454334----677774---45516777788888999739975999970455566643035


Q ss_pred             ----------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             ----------322347899999986398599841017543312---8999999984335764589996052078999999
Q T0528           167 ----------FGRDGVAAFKEALAKTGATLATEEYVPTTTTDF---TAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKL  233 (388)
Q Consensus       167 ----------~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~---~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~  233 (388)
                                ....-...+.+.+.+.|.+............+.   ...+.++....++ +. .+++..-..+.-.+..+
T Consensus       210 ~~~~~~~~~~~~~~R~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-ai~~~nD~~A~g~~~al  287 (366)
T 3h5t_A          210 RERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPD-LT-AVLCTVDALAFGVLEYL  287 (366)
T ss_dssp             HHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC-EEEECCHHHHHHHHHHH
T ss_conf             66541102445566667899998861356554322356765477799999987640478-83-78607889999889999


Q ss_pred             HHHCCH
Q ss_conf             971530
Q T0528           234 QDMDPK  239 (388)
Q Consensus       234 ~~~~~~  239 (388)
                      .+.+.+
T Consensus       288 ~~~Gl~  293 (366)
T 3h5t_A          288 KSVGKS  293 (366)
T ss_dssp             HHTTCC
T ss_pred             HHCCCC
T ss_conf             983999


No 74 
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=89.65  E-value=0.7  Score=21.82  Aligned_cols=202  Identities=10%  Similarity=-0.026  Sum_probs=95.6

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC--CC
Q ss_conf             5683589998246677056789999999999999985579769858999997278898999999999986488512--11
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI--AI   92 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~--i~   92 (388)
                      ......||++.|....  .+-..+..+++...++   .     |..+.+...+ ..+.+...+..+.|... +++.  ++
T Consensus        58 ~~~s~~Igvv~~~~~~--~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~-~~~~e~~~~~~~~l~~~-~vdg~ii~  125 (349)
T 1jye_A           58 GKQSLLIGVATSSLAL--HAPSQIVAAILSRADQ---L-----GASVVVSMVE-RSGVEACKTAVHNLLAQ-RVSGLIIN  125 (349)
T ss_dssp             ----CEEEEEESCTTS--HHHHHHHHHHHHHHHH---T-----TCEEEEEECC-SSSHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred             CCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHH---C-----CCCEEEECCC-CCCHHHHHHHHHHHHHC-CCCCCCCC
T ss_conf             1776289999447766--2267887766666765---0-----7702441234-32279999999999963-77763013


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECC--CHHHH
Q ss_conf             4775133778889998649778642677610157776534897347657888999999-97189389998548--74322
Q T0528            93 GTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQD--YAFGR  169 (388)
Q Consensus        93 G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d--~~~g~  169 (388)
                      ++..+..  ...........+.+......     ..   .+.....+....+...+.+ ..++.++++++...  ....+
T Consensus       126 ~~~~~~~--~~~~~~~~~~~~~~v~~~~~-----~~---~~~~v~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~  195 (349)
T 1jye_A          126 YPLDDQD--AIAVEAACTNVPALFLDVSD-----QT---PINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSAR  195 (349)
T ss_dssp             SCCCHHH--HHHHHHHTTTSCEEESSSCT-----TS---SSCEEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHH
T ss_pred             CCCCCHH--HHHHHHHCCCCCEEEEECCC-----CC---CCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             6643025--67999850589668851467-----88---88746631888999999999975996699994774322899


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             34789999998639859984101754331289999999843357645899960520789999999715300
Q T0528           170 DGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       170 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      .-...|..++++.+..............+......++....++ +. .+++.....+...+..+.+.+...
T Consensus       196 ~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-ai~~~~d~~A~g~~~~l~~~g~~v  264 (349)
T 1jye_A          196 LRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIV-PT-AMLVANDQMALGAMRAITESGLRV  264 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHHHTTCC-CS-EEEESSHHHHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CC-EEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999975998643434775177799999999735999-83-687488899999999999808978


No 75 
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=88.97  E-value=0.79  Score=21.52  Aligned_cols=95  Identities=13%  Similarity=0.002  Sum_probs=53.8

Q ss_pred             CCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf             568358999824667-70567899999999999999855797698589999972788989-9999999998648851211
Q T0528            15 AADDLKIALIYGKTG-PLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPD-LSKAALAEAYQDDGADIAI   92 (388)
Q Consensus        15 a~~~IkIG~~~p~sG-~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~-~a~~~~~~li~~~~v~~i~   92 (388)
                      ...+|+||++.-.+- -..++ .++..+.+.|--.        .+++|++.+.|++.-.. ........|..-|++.+--
T Consensus         5 ~~~~v~IalVGKY~~~l~DaY-~Si~eAL~ha~~~--------~~~~v~i~wi~se~le~~~~~~~~~~L~~~dGilvpg   75 (273)
T 2w7t_A            5 SNPTVRIAFVGKYLQDAGDTY-FSVLQCFEHCQIA--------LQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPG   75 (273)
T ss_dssp             ---CEEEEEEECCHHHHTTTT-HHHHHHHHHHHHH--------HTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECC
T ss_pred             CCCCEEEEEEECCCCCCCHHH-HHHHHHHHHHHHH--------HCCCEEEEEEEHHHCCCCCHHHHHHHHCCCCCEEECC
T ss_conf             999669999968159994289-8799999974787--------0983689998744514767778998743677457378


Q ss_pred             CCCC--CHHHHHHHHHHHHCCCEEEECC
Q ss_conf             4775--1337788899986497786426
Q T0528            93 GTSS--SAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        93 G~~~--S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      |...  ..-.+.++.++.++++|++...
T Consensus        76 GFG~RG~eGkI~Ai~yARenniPfLGIC  103 (273)
T 2w7t_A           76 GFGNRGVDGKCAAAQVARMNNIPYFGVX  103 (273)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHTCCEEEET
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             4787870689999999997388603444


No 76 
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=88.62  E-value=0.83  Score=21.38  Aligned_cols=95  Identities=17%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC--------CHHHHHHHHHHHHHCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788--------9899999999998648
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS--------KPDLSKAALAEAYQDD   86 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~--------~~~~a~~~~~~li~~~   86 (388)
                      ...+++||++.-.++-..+| .++..+.+-|--        -.+.+|++.+.|++-        ++.........|-.-+
T Consensus        22 ~~k~v~IaiVGKY~~l~DaY-~Sv~eAL~ha~~--------~~~~~v~i~widse~le~~~~~~~~~~~~~~~~~L~~~d   92 (289)
T 2v4u_A           22 SMKICSIALVGKYTKLRDCY-ASVFKALEHSAL--------AINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKAD   92 (289)
T ss_dssp             -CEEEEEEEEESCSSCCGGG-HHHHHHHHHHHH--------HTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEEEEECCCCCCHHH-HHHHHHHHHHHH--------HCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             78768999995678995689-969999998417--------619737899998700124433345300567998741388


Q ss_pred             CCCCCCCCCC--CHHHHHHHHHHHHCCCEEEECC
Q ss_conf             8512114775--1337788899986497786426
Q T0528            87 GADIAIGTSS--SAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        87 ~v~~i~G~~~--S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      ++.+.-|...  ..-.+.++.++.+.++|++...
T Consensus        93 GIlVPGGFG~RGieGkI~Ai~yARen~IPfLGIC  126 (289)
T 2v4u_A           93 GILVPGGFGIRGTLGKLQAISWARTKKIPFLGVX  126 (289)
T ss_dssp             EEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEET
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             3883577887774379999999997583077888


No 77 
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=87.55  E-value=0.97  Score=20.97  Aligned_cols=200  Identities=11%  Similarity=0.056  Sum_probs=103.9

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      ......||++.|....  .+......+++.+...   .     |.  .+.......+.....+..+.+... ++++++-.
T Consensus        60 ~~~s~~i~~~~~~~~~--~~~~~~~~~~~~~~~~---~-----g~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dgii~~  126 (332)
T 2o20_A           60 SKRTTTVGVILPTITS--TYFAAITRGVDDIASM---Y-----KY--NMILANSDNDVEKEEKVLETFLSK-QVDGIVYM  126 (332)
T ss_dssp             --CCCEEEEEESCTTC--HHHHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred             CCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHH---C-----CC--EEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             0887257663034455--3012211256777763---5-----83--688722678778899999999844-97667501


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEEC--CCHHHHHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-718938999854--87432234
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQ--DYAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~--d~~~g~~~  171 (388)
                      ..+. ...........++|++.......    ....+   ....+....+...+.++ ..+.+++++|..  +......-
T Consensus       127 ~~~~-~~~~~~~~~~~~~pvv~~~~~~~----~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R  198 (332)
T 2o20_A          127 GSSL-DEKIRTSLKNSRTPVVLVGTIDG----DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTER  198 (332)
T ss_dssp             SSCC-CHHHHHHHHHHCCCEEEESCCCT----TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHH
T ss_pred             CCCC-CHHHHHHHHCCCCCEEEEECCCC----CCCCC---EEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
T ss_conf             1123-07888876414897899603446----78898---8985589999999999997299875333178777039999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCC-CCCCH-HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             78999999863985998410175-43312-8999999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPT-TTTDF-TAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~-~~~d~-~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|+..+++.|.++.....+.. ...+. ......+...   .+.. +++.....+...+..+.+.+..
T Consensus       199 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~-i~~~~d~~A~g~~~~l~~~g~~  264 (332)
T 2o20_A          199 MVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER---GATS-AVVSHDTVAVGLLSAMMDKGVK  264 (332)
T ss_dssp             HHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT---TCCE-EEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH---CCCE-EEECCCHHHHHHHHHHHHCCCC
T ss_conf             9999999998599999546996562166899999999762---3540-4541437666645899971898


No 78 
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=85.25  E-value=1.3  Score=20.24  Aligned_cols=201  Identities=11%  Similarity=0.042  Sum_probs=101.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+-.||++.|....  .+-..+..|++.+++.   .     |.  .+.+.+...+.+........++......+++-+.
T Consensus        60 ~~~~~Igv~~~~~~~--~~~~~~~~~i~~~~~~---~-----g~--~l~~~~~~~~~~~~~~~~~~~~~~~~~giii~~~  127 (339)
T 3h5o_A           60 AKSRTVLVLIPSLAN--TVFLETLTGIETVLDA---A-----GY--QMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL  127 (339)
T ss_dssp             ---CEEEEEESCSTT--CTTHHHHHHHHHHHHH---T-----TC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEEEEECCCCC--HHHHHHHHHHHHHHHH---C-----CC--EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             776189999544321--3699999999999997---4-----99--7999850354167888899998557642799840


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC-HHHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-71893899985487-43223478
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY-AFGRDGVA  173 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~-~~g~~~~~  173 (388)
                      .+..  .........+.|.+......    . .   ..-....+....+...+.++ .++.++++++..+. ........
T Consensus       128 ~~~~--~~~~~~~~~~~~~v~~~~~~----~-~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~l~~~~~~~~~~~~~  197 (339)
T 3h5o_A          128 SHAE--PFERILSQHALPVVYMMDLA----D-D---GRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLD  197 (339)
T ss_dssp             CCCT--THHHHHHHTTCCEEEEESCC----S-S---SCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHH
T ss_pred             CCCC--HHHHHHHHCCCCCCCCCCCC----C-C---CCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
T ss_conf             3320--13444420133320012444----5-5---33034205989999999999975997087864026654220002


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCC---HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             9999998639859984101754331---289999999843357645899960520789999999715300
Q T0528           174 AFKEALAKTGATLATEEYVPTTTTD---FTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       174 ~~~~~~~~~g~~vv~~~~~~~~~~d---~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      .++.++++.+..............+   ....+.++....++ +. .+++.....+.-.+..+.+.+...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~~d~~a~g~~~al~~~G~~v  265 (339)
T 3h5o_A          198 GYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPD-CD-ALFCCNDDLAIGALARSQQLGIAV  265 (339)
T ss_dssp             HHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCC-CC-EEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             567777630455431000024623677899999999954999-83-899726456665434687639988


No 79 
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=83.89  E-value=1.5  Score=19.88  Aligned_cols=202  Identities=12%  Similarity=0.065  Sum_probs=100.6

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      ......||++.|....  .+......+++.++...   |     .  ++.......+..........++.. ++++++-.
T Consensus        57 ~~~s~~ig~~~~~~~~--~~~~~~~~~~~~~~~~~---g-----~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dgiii~  123 (332)
T 2hsg_A           57 SKKTTTVGVIIPDISN--IFYAELARGIEDIATMY---K-----Y--NIILSNSDQNQDKELHLLNNMLGK-QVDGIIFM  123 (332)
T ss_dssp             TC-CCEEEEEEC--CC--SHHHHHHHHHHHHHHHH---T-----C--EEEEEECCSHHHHHHHHHHHTSCC-SSCCEEEC
T ss_pred             HCCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHC---C-----C--EEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             1787089999335666--48889999999999860---7-----6--466213443016899999999863-86389954


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCH---HHHH
Q ss_conf             7513377888999864977864267761015777653489734765788899999997-18938999854874---3223
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYA---FGRD  170 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~---~g~~  170 (388)
                      .+. ............+.|.+.......    ....++   ...+....+...+.++. ++.++++++.....   ....
T Consensus       124 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~---v~~d~~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~~  195 (332)
T 2hsg_A          124 SGN-VTEEHVEELKKSPVPVVLAASIES----TNQIPS---VTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAK  195 (332)
T ss_dssp             CSS-CCHHHHHHHTTSSSCEEEESCCCS----CTTSCE---EEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTT
T ss_pred             CCC-CCHHHHHHHHHCCCCEEEECCCCC----CCCCCE---EEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             777-887899999853897488514568----788876---861579999999999997399625999637654304568


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             478999999863985998410175--433128999999984335764589996052078999999971530
Q T0528           171 GVAAFKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       171 ~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      -...|++++++.|..+......+.  ...+......++....+ .+. .+++..-..+.-.+..+...+..
T Consensus       196 r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-ai~~~~d~~a~g~~~~l~~~g~~  264 (332)
T 2hsg_A          196 KVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDE-KPT-AIFVGTDEMALGVIHGAQDRGLN  264 (332)
T ss_dssp             HHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSS-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC-CCE-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf             9999999999769998853588478877889999999983799-980-89967859999999999983998


No 80 
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=83.61  E-value=1.5  Score=19.81  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             EEEEEECCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             8999824667705--67899999999999999855797698589999972788989999999999864885121147751
Q T0528            20 KIALIYGKTGPLE--AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS   97 (388)
Q Consensus        20 kIG~~~p~sG~~a--~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S   97 (388)
                      .||+++|  |+..  .+.+....|++.+.++    -|      +++.+.+...+.....+.+++++++ +.++|+++. .
T Consensus         7 vVa~l~~--G~i~D~sfn~~~~~G~~~~~~~----~g------i~~~~~e~~~~~~~~~~~i~~~~~~-G~dlIi~~g-~   72 (296)
T 2hqb_A            7 MVGLLVE--DTIDDQGWNRKAYEGLLNIHSN----LD------VDVVLEEGVNSEQKAHRRIKELVDG-GVNLIFGHG-H   72 (296)
T ss_dssp             EEEEECC--CC----CCTHHHHHHHHHHHHH----SC------CEEEEECCCCSHHHHHHHHHHHHHT-TCCEEEECS-T
T ss_pred             EEEEEEC--CCCCCCHHHHHHHHHHHHHHHH----HC------CEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEECC-C
T ss_conf             9999977--8998603899999999999998----69------8699995799889999999999977-999999837-4


Q ss_pred             HHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHH-HHHH-HHHHCCCEEEEEECCCHHHHHHHHH
Q ss_conf             3377888999864-97786426776101577765348973476578889-9999-9971893899985487432234789
Q T0528            98 AAALADLPVAEEN-KKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAI-SNAV-AIGKQGVTIATLAQDYAFGRDGVAA  174 (388)
Q Consensus        98 ~~~~~~~~~~~~~-~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~v~~i~~d~~~g~~~~~~  174 (388)
                      ....++..++.+. ++.++.....   ...    +++........+... +... .+..+-.++++|..-.  .......
T Consensus        73 ~~~~~~~~~A~~yPd~~F~~~d~~---~~~----~Nv~~~~~~~~e~~ylaG~~Aa~~tkt~kvG~vgg~~--~~~~~~g  143 (296)
T 2hqb_A           73 AFAEYFSTIHNQYPDVHFVSFNGE---VKG----ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFP--WQPEVEG  143 (296)
T ss_dssp             HHHHHHHTTTTSCTTSEEEEESCC---CCS----SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCT--TCHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCC---CCC----CCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEECCCC--CCHHHHH
T ss_conf             101699999987899879993376---456----7700243031120059999999857788403882413--7188999


Q ss_pred             HHHHHHHCCCEEEEEEEC-CCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             999998639859984101-754331289-9999998433576458999605207899999997153
Q T0528           175 FKEALAKTGATLATEEYV-PTTTTDFTA-VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP  238 (388)
Q Consensus       175 ~~~~~~~~g~~vv~~~~~-~~~~~d~~~-~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                      |..-++..+-..+...+. .+.+++... ..+.+...++|    +++........-.+.++++.+.
T Consensus       144 f~~Gak~~n~~~~~v~~~g~~~D~~~~~~~a~~li~~gaD----vI~~~a~~~~~gv~~aa~~~g~  205 (296)
T 2hqb_A          144 FVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVD----VFYPAGDGYHVPVVEAIKDQGD  205 (296)
T ss_dssp             HHHHHHHTTCCEEEEEECSSSSCHHHHHHHHHHHHTTTCC----EEECCCTTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9998875277615999758856717789999999976998----9986479866699999997198


No 81 
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=67.10  E-value=4.3  Score=17.07  Aligned_cols=16  Identities=6%  Similarity=-0.047  Sum_probs=8.6

Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             5433128999999984
Q T0528           194 TTTTDFTAVGQRLFDA  209 (388)
Q Consensus       194 ~~~~d~~~~~~~i~~~  209 (388)
                      ++-..+...+.+++..
T Consensus       282 ~~l~~W~~~~~~~~~~  297 (550)
T 1vco_A          282 PNLSFWQEAVRVLKHP  297 (550)
T ss_dssp             CCCHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             8758999999998586


No 82 
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=66.94  E-value=4.4  Score=17.06  Aligned_cols=196  Identities=8%  Similarity=-0.056  Sum_probs=97.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68358999824667705678999999999999998557976985899999727889899999999998648851211477
Q T0528            16 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        16 ~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      ..+-.||++.|.-  ...+-.++..|++-++++   .     |+.+  ++.....+..........+... .+..++...
T Consensus        58 ~~~~~i~~~~~~~--~~~~~~~~~~gi~~~~~~---~-----g~~l--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  124 (330)
T 3ctp_A           58 KNSKTIGLMVPNI--SNPFFNQMASVIEEYAKN---K-----GYTL--FLCNTDDDKEKEKTYLEVLQSH-RVAGIIASR  124 (330)
T ss_dssp             --CCEEEEEESCT--TSHHHHHHHHHHHHHHHH---T-----TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEET
T ss_pred             CCCCEEEEECCCC--CCCHHHHHHHHHHHHHHH---C-----CCEE--EEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf             7883799963766--771466777799999997---7-----9989--9961578878889999987425-346885024


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--HHHHHHH
Q ss_conf             51337788899986497786426776101577765348973476578889999999-71893899985487--4322347
Q T0528            96 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--AFGRDGV  172 (388)
Q Consensus        96 ~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~~g~~~~  172 (388)
                      ...     .......++|++......     ....+   ....+....+...+.++ .++.++++++....  .....-.
T Consensus       125 ~~~-----~~~~~~~~~~vv~~~~~~-----~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~  191 (330)
T 3ctp_A          125 SQC-----EDEYANIDIPVVAFENHI-----LDNII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRY  191 (330)
T ss_dssp             CCC-----SGGGTTCCSCEEEESSCC-----CTTSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHH
T ss_pred             CCC-----HHHCCCCCCCEEEECCCC-----CCCCC---EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf             430-----232024687189934767-----77665---46237899999999999986997799993666661899999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf             8999999863985998410175433-1289999999843357645899960520789999999715300
Q T0528           173 AAFKEALAKTGATLATEEYVPTTTT-DFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR  240 (388)
Q Consensus       173 ~~~~~~~~~~g~~vv~~~~~~~~~~-d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                      ..|.+++++.|.++........... ........+++. + .+. .+++.........+..+...+...
T Consensus       192 ~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~-ai~~~~d~~a~g~~~~l~~~g~~v  257 (330)
T 3ctp_A          192 KGFLDGARAKDLEIDFIEFQHDFQVKMLEEDINSMKDI-V-NYD-GIFVFNDIAAATVMRALKKRGVSI  257 (330)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSSCCGGGGGCCCTTGGGG-G-GSS-EEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C-CCC-CCEECCHHHHHHHHHHHHHCCCCC
T ss_conf             99999998545554200012300466778877888744-6-998-402237899999999999829998


No 83 
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus}
Probab=63.62  E-value=5.1  Score=16.67  Aligned_cols=67  Identities=12%  Similarity=-0.054  Sum_probs=26.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHH
Q ss_conf             938999854874322347899999986398599841017543312899999998433576458999605207
Q T0528           155 GVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGG  226 (388)
Q Consensus       155 ~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~  226 (388)
                      .++++++.+-+-. ..-...+...++...-++.....+=..+.+-...+..+    +...+.+++.......
T Consensus       156 ~~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~dTIC~AT~~RQ~a~~~l----a~~vD~miVVGg~nSS  222 (297)
T 3dnf_A          156 HERVGIVAQTTQN-EEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKL----APEVDVMIIIGGKNSG  222 (297)
T ss_dssp             CSEEEEEECTTCC-HHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHH----GGGSSEEEEESCTTCH
T ss_pred             CCCCEEEEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----HHHCCEEEEECCCCCC
T ss_conf             6752699885217-99999999999987415577786017789899999999----9867999996888994


No 84 
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=61.91  E-value=5.4  Score=16.48  Aligned_cols=47  Identities=6%  Similarity=-0.111  Sum_probs=36.3

Q ss_pred             HHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             9999997-1893899985487432234789999998639859984101754
Q T0528           146 SNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT  195 (388)
Q Consensus       146 ~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~  195 (388)
                      +....++ .+.||++++.+   |.......+++.+++.|++|+....+...
T Consensus        98 A~~~AL~~lg~krI~l~TP---Y~~~~~~~~~~~~~~~G~eVv~~~~l~~~  145 (223)
T 2dgd_A           98 SVYELLKKLNVRKLWIGTP---YIKERTLEEVEWWRNKGFEIVGYDGLGKI  145 (223)
T ss_dssp             HHHHHHHHTTCCEEEEEES---SCHHHHHHHHHHHHTTTCEEEEEEECCCC
T ss_pred             HHHHHHHHCCCCCEEEECC---CCHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf             9999999829997288557---77065799999999679058530024756


No 85 
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=57.29  E-value=6.5  Score=16.00  Aligned_cols=122  Identities=15%  Similarity=0.033  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf             78898999999999986---488512114775133778889998649778642677610157776534897347657888
Q T0528            68 DQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA  144 (388)
Q Consensus        68 ~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  144 (388)
                      .+.||..-......|.+   ..+++.|+|+..++...+ ..++...++|++..--. .......................
T Consensus        31 ~~~dP~l~~~i~~~la~~~~~~~~d~Ivg~~~~GiplA-~~~A~~L~~p~~~~Rk~-~~~~~~~~~~~~~~~~~~~~~~~  108 (197)
T 1y0b_A           31 HQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPA-VMTGLKLGVPVVFARKH-KSLTLTDNLLTASVYSFTKQTES  108 (197)
T ss_dssp             SEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHH-HHHHHHHTCCEEEEBSS-CCSSCCSSEEEEEEEETTTTEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHHHCCCEEEEEEC-CCCCCCCCEEEEEEEEECCCCHH
T ss_conf             54589999999999999850789979997174035999-99999706457999851-67789885799999852044401


Q ss_pred             -HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             -999999971893899985487432234789999998639859984101
Q T0528           145 -ISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV  192 (388)
Q Consensus       145 -~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~  192 (388)
                       ..........+++|.+|-+=-..|.++.. ..+.+++.|.+++....+
T Consensus       109 ~~~~~~~~l~~g~rVlIVDDvi~TG~T~~~-ai~ll~~~Ga~vv~v~vl  156 (197)
T 1y0b_A          109 QIAVSGTHLSDQDHVLIIDDFLANGQAAHG-LVSIVKQAGASIAGIGIV  156 (197)
T ss_dssp             EEEEEGGGCCTTCEEEEEEEEESSCHHHHH-HHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEE
T ss_conf             100234542479469980787634245999-999999889989999999


No 86 
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.62  E-value=7.3  Score=15.70  Aligned_cols=43  Identities=7%  Similarity=0.069  Sum_probs=35.3

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             9999998648851211477513377888999864977864267
Q T0528            77 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        77 ~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      ..-+......++.+|+||.+|+=+..+..++...+...|+..|
T Consensus        31 ~~~~~~~~k~klI~I~GpTasGKT~lAi~LA~~~~~eIIsaDS   73 (339)
T 3a8t_A           31 SLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             -------CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf             7443545788679998988538999999999987997995240


No 87 
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=50.32  E-value=8.5  Score=15.32  Aligned_cols=14  Identities=7%  Similarity=0.014  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             43312899999998
Q T0528           195 TTTDFTAVGQRLFD  208 (388)
Q Consensus       195 ~~~d~~~~~~~i~~  208 (388)
                      +-..+...+.+++.
T Consensus       272 ~l~~W~~~~~~~~~  285 (545)
T 1s1m_A          272 NLSEWEQVIFEEAN  285 (545)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             66777766688748


No 88 
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=49.80  E-value=8.7  Score=15.27  Aligned_cols=36  Identities=6%  Similarity=0.022  Sum_probs=30.9

Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             864885121147751337788899986497786426
Q T0528            83 YQDDGADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        83 i~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      +....+.+++||.+|+-...+..+++..+.++|+.+
T Consensus         6 ~~k~~iI~i~G~pGSGKsT~a~~La~~~g~~~is~g   41 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG   41 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf             777858999899999879999999998598468634


No 89 
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=43.67  E-value=11  Score=14.69  Aligned_cols=41  Identities=12%  Similarity=-0.053  Sum_probs=23.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
Q ss_conf             3589998246677056789999999999999985579769858999997278
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQ   69 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~   69 (388)
                      ++|++...|-+   ...    ..+++-..+++++..+   | +|++.++..+
T Consensus        35 ~lr~a~~~p~~---~~~----~~~~~~fa~~V~e~T~---G-~v~i~~~~~g   75 (361)
T 2zzv_A           35 RWRIQTAWDAG---TVG----YSLFQKFTERVKELTD---G-QLEVQPFPAG   75 (361)
T ss_dssp             EEEEEESSCTT---SHH----HHHHHHHHHHHHHHTT---T-SEEEEEECTT
T ss_pred             EEEEECCCCCC---CHH----HHHHHHHHHHHHHHCC---C-EEEEEEECCC
T ss_conf             99996578998---767----8999999999999769---9-1899993798


No 90 
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=43.38  E-value=11  Score=14.66  Aligned_cols=60  Identities=13%  Similarity=0.105  Sum_probs=27.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             358999824667705678999999999999998557976985-8999997278898999999999986488512
Q T0528            18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGR-KIVVITKDDQSKPDLSKAALAEAYQDDGADI   90 (388)
Q Consensus        18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr-~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~   90 (388)
                      ++|++...|-+.+  ..+    .+++...+.+++..+   || +|++.....-+.+.   +.++++ .+..+++
T Consensus        33 tlr~a~~~p~~~~--~~~----~~~~~fae~V~e~T~---G~i~i~~~~~g~Lg~~~---e~~~~v-~~G~vd~   93 (365)
T 2hzl_A           33 TWRLASSFPKSLD--TIF----GGAEVLSKMLSEATD---GNFQIQVFSAGELVPGL---QAADAV-TEGTVEC   93 (365)
T ss_dssp             EEEEEESSCTTCT--TTT----HHHHHHHHHHHHHTT---TSSEEEEECTTTSSCGG---GHHHHH-HTTSSSE
T ss_pred             EEEEECCCCCCCC--HHH----HHHHHHHHHHHHHCC---CEEEEEEECCCCCCCCH---HHHHHH-HCCCCCE
T ss_conf             9999706899886--277----999999999999749---91999996286546406---689999-7798743


No 91 
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3}
Probab=42.58  E-value=4.2  Score=17.13  Aligned_cols=89  Identities=18%  Similarity=0.025  Sum_probs=43.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC----C------HHHH-HHHHHHHHHC
Q ss_conf             835899982466770567899999999999999855797698589999972788----9------8999-9999999864
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS----K------PDLS-KAALAEAYQD   85 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~----~------~~~a-~~~~~~li~~   85 (388)
                      ..-+||++...|=.-+.+-++   =.++..+.       ..|..+.....-|+.    +      +... ...+++| ++
T Consensus         5 ~~~~igli~~~~~~~~~~~~~---~~~~~~~~-------~p~v~~~~~~ipd~p~~i~~~~~~~~~~~~l~~~~~~l-e~   73 (228)
T 2eq5_A            5 DKYTIGLIRVITLEDKEILNL---HGRIIESA-------FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEF-ER   73 (228)
T ss_dssp             -CEEEEEEESSCCCCHHHHTH---HHHHHHHH-------CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCEEEEEEEECCCCHHHHHH---HHHHHHHH-------CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HH
T ss_conf             113677898421485889999---99998751-------89974676159999854578121123068999999999-86


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             885121147751337788899986497786426
Q T0528            86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      .++++|+-+++|...  +...-+..++|++...
T Consensus        74 ~g~Daivi~C~t~~~--~~~~re~~~iPVvgi~  104 (228)
T 2eq5_A           74 EGVDAIIISCAADPA--VEKVRKLLSIPVIGAG  104 (228)
T ss_dssp             TTCSEEEECSTTCTT--HHHHHHHCSSCEEEHH
T ss_pred             CCCCEEEEECCCHHH--HHHHHHHCCCCEECCH
T ss_conf             799899991487899--9999986699987527


No 92 
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=40.73  E-value=12  Score=14.42  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             5121147751337788899986497786426
Q T0528            88 ADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      +.+++||.+|+-...+..+++..+.++|+.+
T Consensus         2 iI~i~GppGsGKsT~a~~La~~~g~~~i~~g   32 (206)
T 2rgx_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG   32 (206)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf             8999899999879999999998799367589


No 93 
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.37  E-value=13  Score=14.29  Aligned_cols=193  Identities=9%  Similarity=0.037  Sum_probs=99.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT   94 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~   94 (388)
                      ......||++.|....  .+-..+..|++-+..+.        |..+  .+.+. .++..-......|+.. +++.++-.
T Consensus        61 ~~~~~~i~~~~~~~~~--~~~~~~~~gi~~~~~~~--------~~~~--~~~~~-~~~~~~~~~~~~l~~~-~vdGiI~~  126 (333)
T 3jvd_A           61 EHRSALVGVIVPDLSN--EYYSESLQTIQQDLKAA--------GYQM--LVAEA-NSVQAQDVVMESLISI-QAAGIIHV  126 (333)
T ss_dssp             ---CCEEEEEESCSSS--HHHHHHHHHHHHHHHHH--------TCEE--EEEEC-CSHHHHHHHHHHHHHH-TCSEEEEC
T ss_pred             CCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHHC--------CCCC--CCCCC-CCHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf             0776299999457765--17989998999999974--------9863--24666-7417799999997651-33565356


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHH
Q ss_conf             751337788899986497786426776101577765348973476578889999999-7189389998548--7432234
Q T0528            95 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDG  171 (388)
Q Consensus        95 ~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~  171 (388)
                      ...       ......++|++.......   . ...++   ...+....+.....++ ..+.++++++...  ......-
T Consensus       127 ~~~-------~~~~~~~iP~V~v~~~~~---~-~~~~~---V~~d~~~~~~~~~~~l~~~G~r~i~~~~g~~~~~~~~~r  192 (333)
T 3jvd_A          127 PVV-------GSIAPEGIPMVQLTRGEL---G-PGFPR---VLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQER  192 (333)
T ss_dssp             CCT-------TCCC-CCSCEEEECC--------CCSCE---EEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHH
T ss_pred             CHH-------HHHHHCCCCEEEECCCCC---C-CCCCE---EEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf             424-------446660998899767767---8-99988---995531778999999985488369995154310357888


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf             78999999863985998410175433128999999984335764589996052078999999971530
Q T0528           172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK  239 (388)
Q Consensus       172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                      ...|.+++++.|.......  .....+....+.+.....+ .+.. +++.....+...+..+.+.+..
T Consensus       193 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~-~~~a-i~~~~d~~A~g~~~~l~~~g~~  256 (333)
T 3jvd_A          193 MRGISHAASIYGAEVTFHF--GHYSVESGEEMAQVVFNNG-LPDA-LIVASPRLMAGVMRAFTRLNVR  256 (333)
T ss_dssp             HHHHHHHHHHTTCEEEEEE--CCSSHHHHHHHHHHHHHTC-CCSE-EEECCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHHHHCC-CCCE-EEECCHHHHHHHHHHHHHCCCC
T ss_conf             9999999986398621542--4542120589999997079-9871-4444879999999999984999


No 94 
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=35.96  E-value=14  Score=13.96  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=72.8

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf             9999985579769858999997278898999999999986---4885121147751337788899986497786426776
Q T0528            45 GLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVA  121 (388)
Q Consensus        45 a~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~  121 (388)
                      -.+++.+..-.++|.=|  -..|--+||.......+.|.+   +.++++|+|+..++...+ ..++...++|++..--. 
T Consensus        87 l~~~l~~~~r~l~G~~v--y~~~il~dP~~l~~ig~~lA~~~~~~~iD~Ivgve~~GiplA-~~vA~~L~~P~v~~rk~-  162 (291)
T 1o57_A           87 LGQSLANPERILPGGYV--YLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLA-YAAASYLNVPVVIVRKD-  162 (291)
T ss_dssp             HHHHHTCGGGEETTTEE--CCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHH-HHHHHHHTCCEEEEBCC-
T ss_pred             HHHHHCCCCCCCCCCEE--EHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH-HHHHHHHCCCEEEEEEC-
T ss_conf             99995699952688558--745540599999999999999707789979992375678999-99999858985999951-


Q ss_pred             CCCCCCCCCCEEEEE--CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             101577765348973--47657888999999971893899985487432234789999998639859984101
Q T0528           122 DQITGEKWNRYIFRT--GRNSSQDAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV  192 (388)
Q Consensus       122 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~  192 (388)
                      .......  .+....  ..................+++|.+|-+--..|.. .....+.+++.|.+++....+
T Consensus       163 ~k~~~g~--~~~~~~~s~~~~~~~~~~~~~~~l~~g~rVLIVDDvi~tG~T-~~~~i~ll~e~GA~vvgv~vi  232 (291)
T 1o57_A          163 NKVTEGS--TVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGT-INGMINLLDEFNANVAGIGVL  232 (291)
T ss_dssp             -----CC--EEEEEEECSSCCSEEEEEEEGGGSCTTCEEEEEEEEESSSHH-HHHHHHHTGGGTCEEEEEEEE
T ss_pred             CCCCCCC--EEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEEEHHCCHH-HHHHHHHHHHCCCEEEEEEEE
T ss_conf             5778996--399977614576531465202210469789999972302867-999999999879979999999


No 95 
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=35.19  E-value=15  Score=13.89  Aligned_cols=16  Identities=0%  Similarity=-0.168  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999999855
Q T0528            37 QTETGLMMGLEYATKG   52 (388)
Q Consensus        37 ~~~~g~~la~~~iN~~   52 (388)
                      ...++++++.+.+...
T Consensus        24 GV~rAi~~a~~~~~~~   39 (326)
T 3ke8_A           24 GVDRAISIVENALAIY   39 (326)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC
T ss_conf             3999999999999870


No 96 
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.37  E-value=15  Score=13.81  Aligned_cols=31  Identities=10%  Similarity=0.035  Sum_probs=27.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+|+||.+|+-...+..+++..++++|+.+.
T Consensus         3 I~i~GpPGsGK~T~a~~la~~~g~~~is~Gd   33 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGIPHISTGD   33 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCCEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             9998999998799999999987993785899


No 97 
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=33.77  E-value=14  Score=13.95  Aligned_cols=33  Identities=9%  Similarity=0.011  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             851211477513377888999864977864267
Q T0528            87 GADIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      --.+|+||.+|+-...+..+++..++++|+.+.
T Consensus        28 ~riiilGpPGSGK~Tqa~~La~~~g~~hIs~Gd   60 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH   60 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             449998999998799999999987988874899


No 98 
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.34  E-value=15  Score=13.89  Aligned_cols=33  Identities=15%  Similarity=0.058  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             885121147751337788899986497786426
Q T0528            86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      .+..+++||.+|+-...+..+++..+.++|+.+
T Consensus         4 ~k~Ivl~G~PGSGKsT~a~~La~~~~~~~is~g   36 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG   36 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf             888999889999879999999998599077489


No 99 
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=33.22  E-value=16  Score=13.69  Aligned_cols=34  Identities=9%  Similarity=0.106  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             8851211477513377888999864977864267
Q T0528            86 DGADIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .++.+|+||.+|+=+..+..++...+...|+..|
T Consensus         3 ~kiI~I~GpTasGKT~la~~LA~~~~~eIIsaDS   36 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS   36 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEH
T ss_conf             7679998987216999999999987996996202


No 100
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=30.90  E-value=17  Score=13.46  Aligned_cols=31  Identities=10%  Similarity=0.088  Sum_probs=26.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+|+||.+|+-...+..+++..++++|+.+.
T Consensus         7 I~i~GpPGsGK~T~a~~La~~~g~~~is~Gd   37 (220)
T 1aky_A            7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGD   37 (220)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             9998999998799999999986994675999


No 101
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=30.62  E-value=18  Score=13.43  Aligned_cols=31  Identities=6%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+++||.+|+-...+..+++..++++|+.+.
T Consensus        10 Iii~GpPGSGK~Tqa~~La~~~~~~~is~Gd   40 (227)
T 1zd8_A           10 AVIMGAPGSGKGTVSSRITTHFELKHLSSGD   40 (227)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHSSSEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             9998999998799999999997997885999


No 102
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=30.57  E-value=18  Score=13.42  Aligned_cols=40  Identities=10%  Similarity=-0.060  Sum_probs=31.0

Q ss_pred             HHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             7189389998548743223478999999863985998410175
Q T0528           152 GKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT  194 (388)
Q Consensus       152 ~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~  194 (388)
                      ..+.+|++++.+   |.......+++.+++.|++|+.......
T Consensus       114 alg~~rI~v~TP---Y~~~~~~~~~~~~~~~G~ev~~~~~lg~  153 (240)
T 3ixl_A          114 ALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGI  153 (240)
T ss_dssp             HTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             HHCCCEEEEEEC---CHHHHHHHHHHHHHHCCCEECCEEECCC
T ss_conf             829974899708---8689879999999987973303110278


No 103
>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=29.99  E-value=18  Score=13.36  Aligned_cols=45  Identities=4%  Similarity=0.042  Sum_probs=29.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf             999999864885121147751337788899986497786426776
Q T0528            77 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVA  121 (388)
Q Consensus        77 ~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~  121 (388)
                      ..+..+-..++..+++|.............+++.++|++......
T Consensus        27 ~~~~li~~AkrPviivG~g~~~~~~e~~~~~~~~~ipv~~T~~~~   71 (174)
T 1ytl_A           27 PVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAI   71 (174)
T ss_dssp             HHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEETTHH
T ss_pred             HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             999999977995899697531659999999986399889713424


No 104
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=29.12  E-value=19  Score=13.27  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf             5683589998246677056789999999999999985579769858999997278898999999999986488512-114
Q T0528            15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIG   93 (388)
Q Consensus        15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G   93 (388)
                      ...+||||+..   |+++..   +...++   +.+.+.     |.+|+++..++...+..|+.       ...+++ +++
T Consensus        21 ~~~~l~iG~~~---~~~~~~---~~~~~~---~~~~k~-----Gi~Ve~v~F~d~~~~n~AL~-------~G~ID~n~~q   79 (275)
T 3gxa_A           21 AKKEIVFGTTV---GDFGDM---VKEQIQ---PELEKK-----GYTVKLVEFTDYVRPNLALA-------EGELDINVFQ   79 (275)
T ss_dssp             --CEEEEEEET---THHHHH---HHHTHH---HHHHTT-----TCEEEEEEESSSSHHHHHHH-------HTSCSEEEEE
T ss_pred             CCCEEEEEEEC---CCHHHH---HHHHHH---HHHHHC-----CCEEEEEEECCCHHHHHHHH-------CCCCCEECCC
T ss_conf             88539998506---976999---999989---999964-----98799999588347889986-------6996544157


Q ss_pred             C
Q ss_conf             7
Q T0528            94 T   94 (388)
Q Consensus        94 ~   94 (388)
                      +
T Consensus        80 ~   80 (275)
T 3gxa_A           80 H   80 (275)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 105
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.60  E-value=19  Score=13.22  Aligned_cols=30  Identities=10%  Similarity=0.060  Sum_probs=26.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             121147751337788899986497786426
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      .+|+||.+|+-...+..+++..++++|+.+
T Consensus         3 I~i~GpPGSGK~T~a~~La~~~~~~~is~G   32 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG   32 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf             999899999879999999999799788699


No 106
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=28.13  E-value=19  Score=13.17  Aligned_cols=31  Identities=6%  Similarity=0.062  Sum_probs=26.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+++||.+|+-...+..+++..++++|+.+.
T Consensus        19 iii~GpPGSGK~T~a~~La~~~g~~hIs~gd   49 (233)
T 1ak2_A           19 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGD   49 (233)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEEEHHH
T ss_conf             9998999998699999999986984762899


No 107
>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=28.01  E-value=19  Score=13.16  Aligned_cols=31  Identities=13%  Similarity=0.010  Sum_probs=26.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+|+||.+|+-...+..+++..++++|+.+.
T Consensus        11 I~i~GpPGSGK~T~a~~La~~~~~~~is~Gd   41 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFGIPQISTGD   41 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCEECHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             9998999998799999999987995774999


No 108
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=27.50  E-value=20  Score=13.10  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=26.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1211477513377888999864977864267
Q T0528            89 DIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      .+|+||.+|+-......+++..++++|+.+.
T Consensus         3 I~i~G~PGSGK~T~a~~La~~~g~~~is~gd   33 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGD   33 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf             9998999998799999999987982860999


No 109
>1di6_A MOGA, molybdenum cofactor biosythetic enzyme; MOCO, MOCO biosynthesis, gephyrin, unknown function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.49  E-value=20  Score=13.10  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             83589998246677056789999999999999985579769858999-99727889899999999998648851211477
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVV-ITKDDQSKPDLSKAALAEAYQDDGADIAIGTS   95 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~l-v~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~   95 (388)
                      +.+|+|++.--  .-...|+..-.......+.+++.|..  ...++. ++-|   |+..-....+++.++.++++|+...
T Consensus         2 ~~~rvavitvs--D~~~~G~~~D~sgp~l~~~L~~~G~~--~~~v~~~iVpD---d~~~I~~~l~~~~~~~~~dlIittG   74 (195)
T 1di6_A            2 ATLRIGLVSIS--DRASSGVYQDKGIPALEEWLTSALTT--PFELETRLIPD---EQAIIEQTLCELVDEMSCHLVLTTG   74 (195)
T ss_dssp             CCEEEEEEEEE--CC-------CCHHHHHHHHHHHHBCS--CEEEEEEEEES---CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred             CCEEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHCCCC--CEEEEEEEECC---CHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             83089999958--87647975677399999999974997--64877789788---7899999999975046841898357


No 110
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=26.59  E-value=21  Score=13.00  Aligned_cols=119  Identities=15%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH-
Q ss_conf             78898999999999986--488512114775133778889998649778642677610157776534897347657888-
Q T0528            68 DQSKPDLSKAALAEAYQ--DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA-  144 (388)
Q Consensus        68 ~~~~~~~a~~~~~~li~--~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-  144 (388)
                      --+||+.....++.|..  ...+++|+|+-.++... +..++...+.|++...-....... .   .+.....+..... 
T Consensus        31 ll~dpe~~~~~~~~la~~~~~~~D~Vvgi~~~Gi~l-A~~lA~~lg~p~v~~r~~~~~~~~-~---~~~~~~~~~~~~~~  105 (175)
T 1vch_A           31 FLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPL-THVLAEALGLPYVVARRRRRPYME-D---PIIQEVQTLTLGVG  105 (175)
T ss_dssp             CTTCHHHHHHHHHHHGGGSCTTCCEEEEESSTHHHH-HHHHHHHHTCCEEEEBSSCCTTCC-S---CEEEECCC------
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH-HHHHHHHHCCCEEEEEECCCCCCC-C---CEEEEEECCCCCCC
T ss_conf             615999999999999987587988999727766206-899999969995999721367789-8---53621570211455


Q ss_pred             ----HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             ----999999971893899985487432234789999998639859984101
Q T0528           145 ----ISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV  192 (388)
Q Consensus       145 ----~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~  192 (388)
                          ..........++++.++-+=-..|. ......+.+++.|.+++....+
T Consensus       106 ~~~~~~~~~~~~~~G~rVllVDDv~~TG~-Tl~a~~~ll~~~Ga~vv~~~~i  156 (175)
T 1vch_A          106 EVLWLDRRFAEKLLNQRVVLVSDVVASGE-TMRAMEKMVLRAGGHVVARLAV  156 (175)
T ss_dssp             CEEEECHHHHHHHTTCEEEEEEEEESSSH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCEEEECCHHHHCCCCEEEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEEE
T ss_conf             20465211112138988999860786795-0999999999879979999999


No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=26.32  E-value=21  Score=12.97  Aligned_cols=33  Identities=3%  Similarity=0.005  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             885121147751337788899986497786426
Q T0528            86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      -.+.+|+||.+|+-...+..+++..+.++|+.+
T Consensus        15 ~~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g   47 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG   47 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCH
T ss_conf             818999899999879999999998599145344


No 112
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.95  E-value=21  Score=12.93  Aligned_cols=35  Identities=11%  Similarity=-0.028  Sum_probs=29.6

Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             64885121147751337788899986497786426
Q T0528            84 QDDGADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        84 ~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      ...++.+++||.+|+=+..+..+++..+.++|+.+
T Consensus        10 ~k~kiI~l~G~pGSGKsT~a~~La~~~g~~~i~~~   44 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG   44 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf             16858999899999989999999998499067168


No 113
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.48  E-value=23  Score=12.76  Aligned_cols=32  Identities=6%  Similarity=0.042  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             85121147751337788899986497786426
Q T0528            87 GADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      .+.+|+||.+|+-+..+..+++..+.++++.+
T Consensus         7 ~iI~i~G~pGsGKsTia~~Lae~~~~~~is~g   38 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG   38 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             48999899999889999999999699457644


No 114
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=22.16  E-value=25  Score=12.49  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             8851211477513377888999864977864267
Q T0528            86 DGADIAIGTSSSAAALADLPVAEENKKILIVEPA  119 (388)
Q Consensus        86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a  119 (388)
                      ..+.+|+||.+|+=+..+..++...+...|+..|
T Consensus         7 ~~ii~I~GpTasGKT~LA~~LA~~~~~eIIsaDS   40 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS   40 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
T ss_conf             9669998977135999999999987997994125


No 115
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=21.83  E-value=26  Score=12.45  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             389998548743223478999999863985998410175433128999999984335
Q T0528           156 VTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKD  212 (388)
Q Consensus       156 ~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d  212 (388)
                      ++|+ |..| ..|..+...+.+.+++.|.+|+....+.....||.....++......
T Consensus         2 kkI~-igsD-haG~~lK~~l~~~L~~~g~ev~D~G~~~~~~~DYpd~a~~va~~v~~   56 (149)
T 2vvr_A            2 KKIA-FGCD-HVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG   56 (149)
T ss_dssp             CEEE-EEEC-TTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             CEEE-EEEC-CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             8799-9758-70799999999999987998997799866677851889999988733


No 116
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.74  E-value=26  Score=12.44  Aligned_cols=32  Identities=6%  Similarity=-0.008  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             85121147751337788899986497786426
Q T0528            87 GADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      -+.+|+||.+|+-...+..+++..+.++++.+
T Consensus         4 ~~I~i~G~pGSGKsT~a~~La~~~g~~~is~g   35 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG   35 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEECHH
T ss_conf             09999899999989999999998699576089


No 117
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31
Probab=21.10  E-value=26  Score=12.36  Aligned_cols=81  Identities=10%  Similarity=-0.070  Sum_probs=35.6

Q ss_pred             CCCEEEEEECCCHHHHHH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH
Q ss_conf             893899985487432234-7899999986398599841017543312899999998433576458999605207899999
Q T0528           154 QGVTIATLAQDYAFGRDG-VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTK  232 (388)
Q Consensus       154 ~~~~v~~i~~d~~~g~~~-~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~  232 (388)
                      +.++|.+|+--.....+. ...+.+.+.+.|.++........+..+....++.+.+........+++.....++...+..
T Consensus         3 g~~~VlivHG~~gs~~~~w~~~la~~L~~~G~~v~~~d~p~~~~~~~~~~~~~l~~~~~~~~~~~~lvGhS~Gg~~~~~~   82 (192)
T 1uxo_A            3 GTKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRF   82 (192)
T ss_dssp             -CCEEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTSCCHHHHHHHHHTTGGGCCTTEEEEEETTHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             88989997999979514479999999996899799974237786788999999999988618974999817279999999


Q ss_pred             HH
Q ss_conf             99
Q T0528           233 LQ  234 (388)
Q Consensus       233 ~~  234 (388)
                      +.
T Consensus        83 ~~   84 (192)
T 1uxo_A           83 LE   84 (192)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             98


No 118
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.65  E-value=27  Score=12.30  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf             5121147751337788899986497786426
Q T0528            88 ADIAIGTSSSAAALADLPVAEENKKILIVEP  118 (388)
Q Consensus        88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~  118 (388)
                      +.+|+||..|+=+..+..++...+...|+..
T Consensus         7 vi~I~GpTasGKs~la~~lA~~~~~eIIsaD   37 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADALPCELISVD   37 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf             7999897720799999999998799799502


No 119
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=20.31  E-value=27  Score=12.25  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=29.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             835899982466770567899999999999999855797698589999972788989999999999864885121
Q T0528            17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIA   91 (388)
Q Consensus        17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i   91 (388)
                      .+||||+..    +...    +.   +...+.+.+.     |.+|+++..++...+..|+       ....+++-
T Consensus        39 k~i~iG~~~----~~~~----~~---~~v~~~~kk~-----Gi~Ve~~~F~d~~~~n~AL-------~~G~ID~n   90 (295)
T 1p99_A           39 KKVTIGVAS----NDTK----AW---EKVKELAKKD-----DIDVEIKHFSDYNLPNKAL-------NDGDIDMN   90 (295)
T ss_dssp             -CEEEEESS----SCCH----HH---HHHHHHHGGG-----TCCEEEEECSSTTSHHHHH-------HTTSSSEE
T ss_pred             CEEEEEECC----CCHH----HH---HHHHHHHHHC-----CCEEEEEEECCCHHHHHHH-------HCCCCCEE
T ss_conf             639999679----8589----99---9999999974-----9879999837826789998-------75997757


Done!