Query T0528 NP_949733.1, Rhodopseudomonas palustris CGA009, 388 residues
Match_columns 388
No_of_seqs 164 out of 4989
Neff 10.5
Searched_HMMs 11830
Date Fri May 21 18:04:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0528.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0528.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01094 ANF_receptor: Recepto 100.0 6.4E-42 0 266.5 25.5 314 37-356 1-344 (348)
2 PF04348 LppC: LppC putative l 99.9 4.3E-22 3.7E-26 147.5 16.1 313 15-358 216-533 (536)
3 PF04392 ABC_sub_bind: ABC tra 98.0 0.00029 2.4E-08 40.5 16.4 175 20-207 1-182 (294)
4 PF00532 Peripla_BP_1: family; 97.6 0.0016 1.3E-07 36.1 22.2 197 18-237 1-203 (279)
5 PF02608 Bmp: Basic membrane p 83.4 0.82 6.9E-05 19.8 10.3 202 20-239 3-213 (306)
6 PF03808 Glyco_tran_WecB: Glyc 66.9 2.3 0.00019 17.0 9.5 92 143-239 36-127 (172)
7 PF02610 Arabinose_Isome: L-ar 59.5 3.2 0.00027 16.2 6.6 96 17-119 5-105 (359)
8 PF02401 LYTB: LytB protein; 56.9 3.5 0.0003 16.0 5.2 32 155-187 154-185 (281)
9 PF01745 IPT: Isopentenyl tran 50.5 3.7 0.00031 15.8 2.3 32 87-118 2-33 (233)
10 PF02844 GARS_N: Phosphoribosy 30.1 7.3 0.00062 14.0 1.1 40 79-119 54-94 (100)
No 1
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure .; PDB: 3h5l_A 1ewt_B 1isr_A 1ewv_A 1iss_B 1ewk_B 2e4z_A 2e4w_A 2e4u_B 2e4v_B ....
Probab=100.00 E-value=6.4e-42 Score=266.48 Aligned_cols=314 Identities=27% Similarity=0.357 Sum_probs=255.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 9999999999999855797698589999972788--98999999999986488512114775133778889998649778
Q T0528 37 QTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS--KPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKIL 114 (388)
Q Consensus 37 ~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~--~~~~a~~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~ 114 (388)
++..|+++|++++|+.|| + |++++|++.|+.+ ++..+...+.+++.++++.+|+||.+|..+.++.+++.+.++|+
T Consensus 1 ~~~~a~~lAv~~iN~~g~-~-~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~ 78 (348)
T PF01094_consen 1 QLLRAAELAVDEINANGG-L-GRNVKLVVIDDDTCSDPSQAVAAAQKLIQDDGVDAIIGPSSSAVALAVAPIAEEANIPF 78 (348)
T ss_dssp HHHHHHHHHHHHHHH-SS-S-SSSEEEEEEEECTTTTHHHHHHHHHHHHHCTTBSEEE---SHHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHHCCC-C-CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 978999999999974789-9-98979999994676681788889998612588199994841455699999974147760
Q ss_pred EECCCCCCCCCC-CCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEE-EE
Q ss_conf 642677610157-77653489734765788899999997-1893899985487432234789999998639859984-10
Q T0528 115 IVEPAVADQITG-EKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATE-EY 191 (388)
Q Consensus 115 i~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~-~~ 191 (388)
|++++++..+++ +..++++||+.+++..++.+++.++. .+|+++++|+.++.+|+.....+++.+++.|++++.. ..
T Consensus 79 is~~a~~~~l~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~ 158 (348)
T PF01094_consen 79 ISPSATSPALSDRKNKYPYFFRTSPSDSQQARALAEFLKKFGWKKVAVLYSDDDYGRSLAEAFEQALEEAGGTVVAVIES 158 (348)
T ss_dssp EESSHHHGGGGTCTTTTTTEEESSB-CCCHHHHHHHHHHHTTSSEEEEEEESSSCCHHHHHHHHHHHHHGTTEEEEEEEE
T ss_pred CCCCCCHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 22423311200013578730010358077778899999972983799970431014678999999876225507899865
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHH------HHHHCHHHCCCEE
Q ss_conf 1754331289999999843357645899960520789999999715300362112355301------2221101005525
Q T0528 192 VPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNIL------PALAAYKRLPGME 265 (388)
Q Consensus 192 ~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~ 265 (388)
++..++|+...+.+++. ....++.+++.........++.++.+.+.......+....... ..........+..
T Consensus 159 ~~~~~~~~~~~~~~l~~-~~~~~~~Iil~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (348)
T PF01094_consen 159 YPPDTTDFSDLLTKLKN-LKSKPDVIILCGSPEDAANFLKAARELGLNGGGYVWIGTDSWSSDFDDALDEKAPEAMEGVL 237 (348)
T ss_dssp EESSCCGHHHHHHHHHH-HTTTTSEEEEES-HHHHHHHHHHHHHHHTTTTTEEEEEECTTSCHCH-HCHHHHHHTCCCEE
T ss_pred ECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCEE
T ss_conf 22686108899988643-01334427999605021132111001576666306998502344431112310110323069
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHHHHHCCC----C-------HHHHHH
Q ss_conf 7402257877898999999999997--------08898756899999999999999961899----8-------899999
Q T0528 266 GATYYYYDIPKNPINEWLVTEHQKR--------FNAPPDFFTAGGFSAAMAVVTAVQKAKST----D-------TEKLIA 326 (388)
Q Consensus 266 ~~~~~~~~~~~~~~~~~f~~~~~~~--------~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~----~-------~~~v~~ 326 (388)
... +..+.++..++|+++|++. ++..|+.++..+||+++++++|++++++. . ++.|.+
T Consensus 238 ~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~yDav~~la~Al~~~~~~~~~~~~~~~~~~~~~l~~ 314 (348)
T PF01094_consen 238 GFS---PPSPDNPDNQDFVERYKKKFNREYEEFYGQEPSYYAAYAYDAVYLLAQALERAGSDGPDATADAPWRNGEALIK 314 (348)
T ss_dssp EEE---ES-GGSHHHHHHHHHHHTTCHCTCHHTTTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHTSHHHHHHHH
T ss_pred EEE---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 973---23344532045554434430112223578630165799999999999999986254876544333213899999
Q ss_pred HHHCCCCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 996187555324789724788502437999
Q T0528 327 AMEGMEFDTPKGKMVFRKEDHQALQSMYHF 356 (388)
Q Consensus 327 aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~ 356 (388)
+|++++|+|++|+++||+++|+.....|.+
T Consensus 315 ~l~~~~f~g~~G~v~fd~~~g~~~~~~~~~ 344 (348)
T PF01094_consen 315 ALRNVSFEGLTGPVSFDDNGGDRPNYDYHI 344 (348)
T ss_dssp HHHTEEE-----EEEE-T-T-BBE-EEEEE
T ss_pred HHHCCCEECCCEEEEECCCCCCCCCCEEEE
T ss_conf 997684477833089848979887875999
No 2
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This family includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3ckm_A.
Probab=99.89 E-value=4.3e-22 Score=147.47 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=204.9
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56835899982466770567899999999999999855797698589999972788989999999999864885121147
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~ 94 (388)
...+.+|++++|+||+++..|..+.+|+.+|.. ..+ +.++++.++|+.++ ....++++++ .+++.+|+||
T Consensus 216 ~~~~~~ialLLPlsG~~a~~g~ai~~G~~aA~~---~~~----~~~~~l~v~DT~~~--~~~~~~~~a~-~~Ga~~IvGP 285 (536)
T PF04348_consen 216 PTPPVRIALLLPLSGPLAQVGQAIRDGFLAAYF---ADG----DSNPELQVYDTQGT--SAAAAYRQAI-AEGADFIVGP 285 (536)
T ss_dssp ------E-EEE-----------TTT---TTT---------------S-EEEEETTTS---HHHHHHHHH-H----EE---
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH---HCC----CCCCEEEEEECCCC--HHHHHHHHHH-HCCCCEEEEC
T ss_conf 678650699956999733799999999999752---303----67752999858970--6999999998-7599599960
Q ss_pred CCCHHHHHHHHHHH--HCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHH
Q ss_conf 75133778889998--649778642677610157776534897347657888999999971-893899985487432234
Q T0528 95 SSSAAALADLPVAE--ENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRDG 171 (388)
Q Consensus 95 ~~S~~~~~~~~~~~--~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~g~~~ 171 (388)
+....+..+..... ..++|+++...+..... .+..|..+-+...++...+.++.. +.+++.++.++++||+.+
T Consensus 286 L~k~~v~~l~~~~~~~~~~ipvLaLN~~~~~~a----~~~~~~f~Lspedea~~~a~~a~~~G~~~~~vl~P~~~~G~r~ 361 (536)
T PF04348_consen 286 LLKENVEALAQAAQLAAAGIPVLALNSSDNSVA----GPGLFYFGLSPEDEARQAAEYAWSDGYRRPLVLAPQGDWGQRV 361 (536)
T ss_dssp -SHHHHHHHHH-GG-GG---EEEES---TT--------TTEEE----HHHHHHHHHHHHHH----S-EEEEESS------
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC----CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 465679999750334445783675268975557----8875897378289999999999976997479996686389999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH-CCC-CCCCCC
Q ss_conf 789999998639859984101754331289999999843357645899960520789999999715300-362-112355
Q T0528 172 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR-YGI-ELSTGG 249 (388)
Q Consensus 172 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 249 (388)
...|.+..+..|++++...+|.. ..|+...+. .......+.+++.. .......++......... ..+ ..+...
T Consensus 362 ~~AF~~~w~~~gg~~~~~~~y~~-~~d~~~~i~---~~~r~d~DaIfl~a-~~~~~~~ikP~L~~~~a~~~pvyatS~~~ 436 (536)
T PF04348_consen 362 ADAFQQEWQQLGGTVVAIEYYDS-PADLSQAIR---PRRRQDIDAIFLAA-TPEQARLIKPQLDFHFAGDVPVYATSRSY 436 (536)
T ss_dssp --HHHHHHHHH-----EEEEESS-TTHHHHHHH---HS--TT--EEEE----HHHHHHH---GGG-T-TT-EEEE-GGG-
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHH---HCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 99999999983797213664487-676999975---31478867799977-88899998888731368999878625445
Q ss_pred CHHHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 30122211010055257402257877898999999999997088987568999999999999999618998899999996
Q T0528 250 NILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAME 329 (388)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~ 329 (388)
+..........+.|+.+.-.++.-.+..+..+.....|....+.. .-.-+.|||+..++.+ +. -.+.+.
T Consensus 437 ~~~~~~~~~~dL~Gv~f~d~Pwl~~~~~~~~~~~~~~~~~~~~~~-~RL~AlG~DA~~L~~~-l~---------~l~~~~ 505 (536)
T PF04348_consen 437 SGNPNPEQDRDLNGVRFSDIPWLLDPNSPLRQQLAALWPNASGSL-MRLYALGYDAYRLANR-LN---------QLRQVP 505 (536)
T ss_dssp -HHT-HHHHHHT---EEEE-GGGG---SHHHHHHH-HH----HHH-HHHHH---HHHHHHHT-HH---------HHHH--
T ss_pred CCCCCCCHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHH-HH---------HHHHCC
T ss_conf 788996455775588521434205998068999865165667606-9899987889999999-99---------986287
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 18755532478972478850243799999
Q T0528 330 GMEFDTPKGKMVFRKEDHQALQSMYHFKV 358 (388)
Q Consensus 330 ~~~~~g~~G~i~f~~~~~~~~~~~~i~~~ 358 (388)
+..++|.+|.+++++ +++..+.+--.+.
T Consensus 506 ~~~~~G~TG~Ls~~~-~~~i~R~l~Wa~~ 533 (536)
T PF04348_consen 506 GYQIDGLTGTLSLDP-NGRIERQLSWAQF 533 (536)
T ss_dssp ---B------EEE-T-T-BEEE--EEEEE
T ss_pred CCEECCCCEEEEECC-CCEEEEEECCCCC
T ss_conf 876336613789889-9808985561000
No 3
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 2qh8_A.
Probab=98.01 E-value=0.00029 Score=40.47 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=105.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
|||++...+.+ .+ .+..+|++-.+++ .|- .. +.+++..++.+.|+....+.+++|.. +++++|+.. ++..
T Consensus 1 ~igi~~~~~~~--~l-~~~~~g~~~~L~~---~g~-~~-~~~~~~~~~a~~d~~~~~~i~~~l~~-~~~DlIva~-gt~a 70 (294)
T PF04392_consen 1 KIGIVQLVSHP--AL-DEIVEGFKDGLAE---LGY-EE-KNVRIDYRNANGDPERLAAIARKLVA-DKPDLIVAI-GTPA 70 (294)
T ss_dssp EEEEEESS--H--HH-HHHH-------TT------------EEEEEEE----HHHHHHHHHHH------SEEE----HHH
T ss_pred CEEEEEECCCH--HH-HHHHHHHHHHHHH---CCC-CC-CCEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEE-CCHH
T ss_conf 94899962757--79-9999999999996---699-65-41799993478899999999999975-699999991-8499
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCC---CCCCC--EEEEECCC-HHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHH
Q ss_conf 778889998649778642677610157---77653--48973476-57888999999971893899985487-4322347
Q T0528 100 ALADLPVAEENKKILIVEPAVADQITG---EKWNR--YIFRTGRN-SSQDAISNAVAIGKQGVTIATLAQDY-AFGRDGV 172 (388)
Q Consensus 100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~---~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~d~-~~g~~~~ 172 (388)
+..+....... +|++..+.+.+.-.+ ....| ++.-.... ....-..+...+....|++++++..+ ..+....
T Consensus 71 a~~l~~~~~~~-iPIVf~~V~dp~~~glv~s~~~pg~nvTGv~~~~~~~~~l~ll~~l~P~~k~igvly~~~~~~~~~~~ 149 (294)
T PF04392_consen 71 AQALAKAIKDD-IPIVFSGVSDPVGAGLVPSLDRPGGNVTGVSEPVPVEKQLELLKELLPDAKRIGVLYDPSEPNSVAQV 149 (294)
T ss_dssp HHHHHHH-SS--S-EEEEEES------S-S-SS-----EE-EE----HHHHHHHHHHHSTT--EE-EEE----HHHHHHH
T ss_pred HHHHHHHHCCC-CCEEEEECCCHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 99999730788-64999971683433566556689998899991578999999999868788689999789885469999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89999998639859984101754331289999999
Q T0528 173 AAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLF 207 (388)
Q Consensus 173 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~ 207 (388)
..+++.+++.|++++... + .+..+....+..+.
T Consensus 150 ~~~~~~a~~~gi~l~~~~-v-~~~~e~~~~~~~l~ 182 (294)
T PF04392_consen 150 EELKAAAKELGIELVEIP-V-SSSNEIEQALESLA 182 (294)
T ss_dssp HHHHHHHHH---EEEEEE---SSGGGHHHHHHHHG
T ss_pred HHHHHHHHHCCCEEEEEE-C-CCHHHHHHHHHHHH
T ss_conf 999999998698799996-5-87778999999731
No 4
>PF00532 Peripla_BP_1: family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) , .; PDB: 3cs3_A 3g85_A 2qu7_A 3ctp_B 3e61_B 3hs3_B 2h0a_A 3d8u_B 3h5o_B 3e3m_B ....
Probab=97.55 E-value=0.0016 Score=36.05 Aligned_cols=197 Identities=16% Similarity=0.100 Sum_probs=105.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
+-+||+++|-.. ..+-..+..|++-+.++ .| ..+. +.....+.... +..+.++.. ++++|+-....
T Consensus 1 ~~~Igvi~~~~~--~~f~~~~~~gi~~~a~~---~g-----~~~~--~~~~~~~~~~~-~~i~~l~~~-~vDgIIi~~~~ 66 (279)
T PF00532_consen 1 TKKIGVIVPDLD--NPFFSQLIEGIEQAAKE---HG-----YDVI--VINSNSDEDQE-EQIENLISQ-KVDGIIIAPMD 66 (279)
T ss_dssp -SEEEEEESSTT--SHHHHHHHHHHHHHHHH---TT-----TEEE--EEEETTSHHHH-HHHHHHHHT-TESEEEEESSS
T ss_pred CCEEEEEECCCC--CHHHHHHHHHHHHHHHH---CC-----CEEE--EECCCCCHHHH-HHHHHHHHC-CCCEEEEECCC
T ss_conf 999999948898--99999999999999997---59-----9999--94799978999-999999967-99999997883
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCE-EEEEECCCHH--HHHHHH
Q ss_conf 337788899986497786426776101577765348973476578889999999-718938-9998548743--223478
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVT-IATLAQDYAF--GRDGVA 173 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~i~~d~~~--g~~~~~ 173 (388)
.....+...... ++|++........ ....+++ ..+........+.++ .++.++ ++++..+... .+.-..
T Consensus 67 ~~~~~l~~~~~~-gipvV~~~~~~~~---~~~~~~v---~~d~~~~g~~~~~~L~~~g~~~~I~~l~~~~~~~~~~~R~~ 139 (279)
T PF00532_consen 67 PDDPALEKLAKK-GIPVVLVDRDSDS---PDGVPSV---GSDNYQAGYLAAEYLLEQGHRRGIAFLGGPSSSSTSRERYE 139 (279)
T ss_dssp TTHHHHHHHHHS-TSCEEEESSSSSS---SSSSEEE---EEEHHHHHHHHHHHHHHHTHESCEEEEECCTTSHHHHHHHH
T ss_pred CCCHHHHHHHHC-CCEEEEEECCCCC---CCEEEEE---CCCCHHHHCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 220367899973-9759998224556---4204675---03415520221421654178864123455444434889999
Q ss_pred HHHHHHHHCCCEE--EEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 9999998639859--984101754331289999999843357645899960520789999999715
Q T0528 174 AFKEALAKTGATL--ATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 174 ~~~~~~~~~g~~v--v~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
.|++++++.|.++ ...........+-...+.++....|+. ..+++..-..+.-.+..+...+
T Consensus 140 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i--~ai~~~~d~~A~g~~~al~~~G 203 (279)
T PF00532_consen 140 GFKEALKEHGIELKIVDVAEGDNDREDAREAIEELLKSHPDI--DAIFASNDEMAIGAIRALKEAG 203 (279)
T ss_dssp HHHHHHHHTTTTEEEEEEEESTSSSHHHHHHHHHHHHHSTTE--SEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC--CEEEECCHHHHHHHHHHHHHCC
T ss_conf 999999984996300145403322214678887631247688--5999888899999999999769
No 5
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family . The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group .; GO: 0008289 lipid binding; PDB: 2hqb_A 2fqx_A 2fqy_A 2fqw_A.
Probab=83.38 E-value=0.82 Score=19.75 Aligned_cols=202 Identities=17% Similarity=0.107 Sum_probs=96.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 899982466770567899999999999999855797698589999972788-9899999999998648851211477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS-KPDLSKAALAEAYQDDGADIAIGTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~-~~~~a~~~~~~li~~~~v~~i~G~~~S~ 98 (388)
||+++.|-.-.-..+.+....|++-+.++. . | +++...+... +++...+.++++++ ++..+|++... .
T Consensus 3 ~v~v~~~G~i~D~sfn~~~~~G~~~~~~~~--~-g------i~~~~~e~~~~~~~~~~~~~~~~~~-~g~~lIi~~g~-~ 71 (306)
T PF02608_consen 3 KVAVLDPGPINDKSFNQSAYEGLQKAEKEL--D-G------IEVKYVESVPEEPADYEQALREAAD-DGYDLIIGTGF-Q 71 (306)
T ss_dssp EEEEE----TTSSSHCHHHH---HHHHHHT----T-------EEEEEE--S-SHHHHHHHHHHHHH-TT--EEEEE---C
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHH--C-C------CEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEECH-H
T ss_conf 999997689898328999999999999974--8-9------5299972577547779999999986-79999999677-8
Q ss_pred HHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE----CCCHHHHHHHH
Q ss_conf 377888999864-9778642677610157776534897347657888999999971893899985----48743223478
Q T0528 99 AALADLPVAEEN-KKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGVTIATLA----QDYAFGRDGVA 173 (388)
Q Consensus 99 ~~~~~~~~~~~~-~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~d~~~g~~~~~ 173 (388)
...++.+++.+. ++.++........- .++...+.|+.-........+. ..+.+ -.+++++. .+.+.-.....
T Consensus 72 ~~~~~~~vA~~yPd~~F~~idg~~~~~-~~Nv~~~~f~~~e~~yLaG~~A-a~~tk-t~kvg~ig~~~G~~~p~v~~~~~ 148 (306)
T PF02608_consen 72 FSDAIEKVAKEYPDVKFIIIDGYVDGP-NPNVISYDFREEEAAYLAGVAA-AKMTK-TGKVGFIGAIGGMDIPPVNRFIN 148 (306)
T ss_dssp CHHHHHCCCCC-TTSEEEEESS---S---TTEEEEEE-----------HH-HHCHC-CSEE-EEEEEE---S-TTHHHH-
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEEEEECCHHHHHHHHHHHH-HHHHC-CCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 889999999888998899996776788-8738889755455789999999-99842-79876503214614576887799
Q ss_pred HHHHHHHHCC--CEEEEEEECCCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 9999998639--859984101754331289-99999984335764589996052078999999971530
Q T0528 174 AFKEALAKTG--ATLATEEYVPTTTTDFTA-VGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 174 ~~~~~~~~~g--~~vv~~~~~~~~~~d~~~-~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.|..-++..+ .++.....-.+.+++-.. ....+.+.++| +++........-.+..+++.+..
T Consensus 149 gF~~Ga~~vnp~~~v~~~~~gs~~D~~~~~~~a~~li~~G~D----VI~~~ag~~~~gv~~aa~e~g~~ 213 (306)
T PF02608_consen 149 GFEQGAKYVNPDIKVNVSYTGSFDDPAKGKEAAQALIDQGAD----VIFPAAGGTGTGVIQAAKEAGVY 213 (306)
T ss_dssp ------TTTTTT-EEEEEE-S-SS-CCHHHHHHHHHHCTT------EEEB-----HHHHHHHHHHHHHE
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC----EEEEECCCCCHHHHHHHHHCCCC
T ss_conf 999999975878718999817717817899999999984990----99980689867999999981995
No 6
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.86 E-value=2.3 Score=17.05 Aligned_cols=92 Identities=9% Similarity=-0.096 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 88999999971893899985487432234789999998639859984101754331289999999843357645899960
Q T0528 143 DAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVI 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~ 222 (388)
....+......++.+++++.............+++. -.|.+++....-+.+..+...+++.|.+.++| .+++...
T Consensus 36 l~~~l~~~~~~~~~rifllG~~~~~~~~~~~~l~~~--yP~l~i~G~~~g~f~~~e~~~i~~~I~~s~pd---iv~vglG 110 (172)
T PF03808_consen 36 LFPDLLRYAERRGKRIFLLGGSEEVLEKAAERLRAR--YPGLQIVGYYHGYFGPEEEEAIIEAINASGPD---IVFVGLG 110 (172)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC---EEEEECC
T ss_conf 999999987761983999909889999999999988--89971885249999978999999999972969---9999889
Q ss_pred CCHHHHHHHHHHHHCCH
Q ss_conf 52078999999971530
Q T0528 223 WAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (388)
.+-.-.++......-..
T Consensus 111 ~PkQE~~~~~~~~~l~~ 127 (172)
T PF03808_consen 111 SPKQEIFIARNRDRLPA 127 (172)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 98789999998987799
No 7
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (araA) 5.3.1.4 from EC catalyses the coversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source .; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 2ajt_B 2hxg_C.
Probab=59.50 E-value=3.2 Score=16.23 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 83589998246677056789999----99999999998557976985899999727889899999999998648851211
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTE----TGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI 92 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~----~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~ 92 (388)
+...|.++ +|..--||.+.+ .-.+--++.+|+.+. + +++++....-.+|+...+..++.-.++.++.|+
T Consensus 5 ~~~e~wF~---~gsQ~LYg~e~L~~v~~~s~~i~~~l~~~~~-~---p~~vv~k~~~~~~~~i~~~~~ean~~~~c~GVi 77 (359)
T PF02610_consen 5 KKYEFWFV---TGSQHLYGEETLKQVAEHSQEIVDGLNASGK-L---PVKVVFKPVVTTPDEITRVMKEANYDEDCDGVI 77 (359)
T ss_dssp GC-EEEEE-------TT---HHHHHHHHHHHHHHHHHHHHS------SSEEEE------HHHHHHHHHHHHH-TTB---E
T ss_pred CCCEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-C---CEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 88649999---4253546988999999999999999734459-8---607982576689999999999851678863896
Q ss_pred CCCCCHH-HHHHHHHHHHCCCEEEECCC
Q ss_conf 4775133-77888999864977864267
Q T0528 93 GTSSSAA-ALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 93 G~~~S~~-~~~~~~~~~~~~vp~i~~~a 119 (388)
--..+-. +....+.+...+.|++-...
T Consensus 78 ~wMhTfSPAkmwI~gl~~l~kPllhl~t 105 (359)
T PF02610_consen 78 TWMHTFSPAKMWIPGLQRLQKPLLHLHT 105 (359)
T ss_dssp EE-SS---THHHH----S--S--EEE--
T ss_pred EHHHHHCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4352224199999999871998799845
No 8
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants . LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; PDB: 3dnf_B.
Probab=56.87 E-value=3.5 Score=15.96 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=16.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 938999854874322347899999986398599
Q T0528 155 GVTIATLAQDYAFGRDGVAAFKEALAKTGATLA 187 (388)
Q Consensus 155 ~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv 187 (388)
.++++++.+-+- ...-...+...++...-.+.
T Consensus 154 ~~~v~vvsQTT~-~~~~~~~i~~~l~~~~~~~~ 185 (281)
T PF02401_consen 154 PKKVAVVSQTTM-SIEEFEEIVEALKKRFPELE 185 (281)
T ss_dssp --EE--EE-TT---HHHHHHH---HHHHSSEEE
T ss_pred CCCEEEEEECCC-CHHHHHHHHHHHHHHCCCCC
T ss_conf 752899981477-39999999999998672354
No 9
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid .; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ze8_C 2ze6_A 2ze7_A 2ze5_A.
Probab=50.46 E-value=3.7 Score=15.80 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 85121147751337788899986497786426
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
++.+|+||.+++-+..+..++.+.|.|+++..
T Consensus 2 ~~~lI~GpT~~GKT~~a~~LA~~tg~pVi~lD 33 (233)
T PF01745_consen 2 KVYLIFGPTGSGKTSLAIALAQQTGWPVISLD 33 (233)
T ss_dssp EEEEEE--TT---HHHHHHHHHH---EEEE--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 37999789888814999999999799669732
No 10
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 1gso_A 1vkz_B 2qk4_A 2ys6_A 2yrw_A 2ys7_A 2yrx_A 2ip4_B 2yw2_A 2yya_A ....
Probab=30.06 E-value=7.3 Score=14.03 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=18.3
Q ss_pred HHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 999986488512-11477513377888999864977864267
Q T0528 79 LAEAYQDDGADI-AIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 79 ~~~li~~~~v~~-i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
..+++.+.+++. |+||- ......+...+.+.+++++.|+.
T Consensus 54 i~~~a~~~~idlvvvGPE-~pL~~Gl~D~l~~~gi~vfGP~k 94 (100)
T PF02844_consen 54 IVDFAKENNIDLVVVGPE-APLVAGLADALRAAGIPVFGPSK 94 (100)
T ss_dssp HHHHHHHTTESEEE---H-HHHH---HHHHHH---TEE---H
T ss_pred HHHHHHHCCCCEEEECCH-HHHHHHHHHHHHHCCCCEECCCH
T ss_conf 999999849998998961-88887679999878996689398
Done!