Query T0528 NP_949733.1, Rhodopseudomonas palustris CGA009, 388 residues
Match_columns 388
No_of_seqs 164 out of 4989
Neff 10.5
Searched_HMMs 15564
Date Fri May 21 18:04:22 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0528.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0528.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qo0a_ c.93.1.1 (A:) Amide re 100.0 0 0 364.9 39.0 351 17-377 1-360 (373)
2 d1usga_ c.93.1.1 (A:) Leucine- 100.0 0 0 343.6 37.2 340 17-364 1-342 (346)
3 d1jdpa_ c.93.1.1 (A:) Hormone 100.0 4.2E-44 0 280.3 35.9 345 14-366 3-384 (401)
4 d1dp4a_ c.93.1.1 (A:) Hormone 100.0 2.6E-42 0 269.6 32.4 334 18-359 2-382 (425)
5 d1ewka_ c.93.1.1 (A:) Metabotr 100.0 2.6E-35 1.7E-39 227.6 34.9 341 17-362 8-453 (477)
6 d3ckma1 c.93.1.1 (A:257-573) Y 100.0 1.5E-36 9.7E-41 234.9 20.6 308 20-362 2-313 (317)
7 d2fvya1 c.93.1.1 (A:2-306) Gal 98.8 4.7E-06 3E-10 51.9 23.1 162 18-192 1-178 (305)
8 d1jx6a_ c.93.1.1 (A:) Quorum-s 98.5 2.6E-05 1.6E-09 47.5 25.1 213 15-238 37-255 (338)
9 d8abpa_ c.93.1.1 (A:) L-arabin 98.4 6.8E-05 4.4E-09 44.9 23.8 208 18-240 1-222 (305)
10 d2dria_ c.93.1.1 (A:) D-ribose 98.1 0.00021 1.4E-08 42.0 22.1 197 20-237 3-205 (271)
11 d1jyea_ c.93.1.1 (A:) Lac-repr 97.9 0.00055 3.5E-08 39.5 21.8 198 19-239 1-202 (271)
12 d1dbqa_ c.93.1.1 (A:) Purine r 97.5 0.0025 1.6E-07 35.6 19.6 197 20-239 2-205 (282)
13 d1guda_ c.93.1.1 (A:) D-allose 97.3 0.0047 3E-07 33.9 22.2 205 20-237 3-216 (288)
14 d2nzug1 c.93.1.1 (G:58-332) Gl 96.8 0.012 7.7E-07 31.5 18.6 198 18-239 3-207 (275)
15 d1tjya_ c.93.1.1 (A:) AI-2 rec 96.8 0.012 7.8E-07 31.4 22.5 180 18-212 3-189 (316)
16 d1byka_ c.93.1.1 (A:) Trehalos 96.3 0.025 1.6E-06 29.5 17.7 189 20-238 4-196 (255)
17 d1byka_ c.93.1.1 (A:) Trehalos 96.0 0.04 2.6E-06 28.3 18.5 189 19-237 3-195 (255)
18 d1vcoa1 c.23.16.1 (A:298-547) 89.4 0.48 3.1E-05 21.9 5.7 90 17-117 2-93 (250)
19 d1s1ma1 c.23.16.1 (A:287-544) 86.2 0.8 5.2E-05 20.5 6.2 89 18-118 3-93 (258)
20 d1ckea_ c.37.1.1 (A:) CMP kina 55.4 3.8 0.00024 16.4 2.4 33 87-119 4-36 (225)
21 d3adka_ c.37.1.1 (A:) Adenylat 49.4 6.1 0.00039 15.2 3.7 37 83-119 5-41 (194)
22 d1ytla1 c.31.1.6 (A:17-174) Ac 45.9 6.9 0.00044 14.9 3.9 48 77-124 11-58 (158)
23 d1ckea_ c.37.1.1 (A:) CMP kina 43.8 7.5 0.00048 14.7 2.4 33 87-119 4-36 (225)
24 d1q3ta_ c.37.1.1 (A:) CMP kina 43.7 7.5 0.00048 14.7 2.5 32 88-119 5-36 (223)
25 d1o57a2 c.61.1.1 (A:75-276) Pu 43.2 7.6 0.00049 14.7 4.0 122 68-192 34-158 (202)
26 d1qf9a_ c.37.1.1 (A:) UMP/CMP 40.8 7.6 0.00049 14.7 2.0 33 86-118 6-38 (194)
27 d1ig8a2 c.55.1.3 (A:225-486) H 38.3 9.1 0.00058 14.2 5.8 14 20-34 3-16 (262)
28 d2ez9a1 c.31.1.3 (A:183-365) P 37.8 9.3 0.00059 14.1 5.9 64 69-134 14-77 (183)
29 d1gsoa2 c.30.1.1 (A:-2-103) Gl 36.0 9.9 0.00063 14.0 2.9 45 79-124 58-103 (105)
30 d1ukza_ c.37.1.1 (A:) Uridylat 34.6 10 0.00067 13.8 2.6 33 86-118 8-40 (196)
31 d1ovma1 c.31.1.3 (A:181-341) I 27.7 14 0.00088 13.1 3.2 83 78-164 22-106 (161)
32 d1y0ba1 c.61.1.1 (A:1-191) Xan 27.6 14 0.00088 13.1 4.9 123 67-192 27-153 (191)
33 d1teva_ c.37.1.1 (A:) UMP/CMP 26.9 14 0.00091 13.0 2.4 32 88-119 3-34 (194)
34 d2ak3a1 c.37.1.1 (A:0-124,A:16 25.4 15 0.00097 12.9 2.8 30 89-118 9-38 (189)
35 d1zl0a2 c.23.16.7 (A:3-169) LD 24.4 16 0.001 12.8 5.4 74 17-102 10-94 (167)
36 d1nn4a_ c.121.1.1 (A:) Alterna 24.1 16 0.001 12.7 8.1 72 155-228 14-87 (159)
37 d1o1xa_ c.121.1.1 (A:) Putativ 21.4 18 0.0012 12.4 8.2 48 165-212 10-57 (145)
38 d1vlja_ e.22.1.2 (A:) NADH-dep 20.8 19 0.0012 12.3 10.9 22 73-94 78-99 (398)
No 1
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=0 Score=364.87 Aligned_cols=351 Identities=17% Similarity=0.247 Sum_probs=297.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
.|| ||+++|+||+++.+|+++.+|+++|++++|++|| |+||+|+++++|++++|+.+++++++|+.+++|.+|+|+.+
T Consensus 1 ~pv-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GG-i~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~ 78 (373)
T d1qo0a_ 1 RPL-IGLLFSETGVTADIERSQRYGALLAVEQLNREGG-VGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 78 (373)
T ss_dssp CCE-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTC-BTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCS
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHH
T ss_conf 988-9997288684265529999999999999885099-68868899997699999999999999996089669980413
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899999997-18938999854874322347899
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAF 175 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~ 175 (388)
|..+.++.+++++.++|++++.+.+. ....+++|++.+++.++...++.++. +++++++++++|+.||+.....+
T Consensus 79 S~~~~av~~~~~~~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~ 154 (373)
T d1qo0a_ 79 SHTRKAVMPVVERADALLCYPTPYEG----FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 154 (373)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCCCC----CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCC----CCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 33244568999971996782233543----45687336604671787777888987515742553467764037888653
Q ss_pred HHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCC--CCCCCCH
Q ss_conf 99998639859984101--7543312899999998433576458999605207899999997153003621--1235530
Q T0528 176 KEALAKTGATLATEEYV--PTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIE--LSTGGNI 251 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~--~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 251 (388)
++.+++.|++|+..+++ .++++||++++.++++.++| .+++.....+...++++..+.+.....+. .......
T Consensus 155 ~~~~~~~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 231 (373)
T d1qo0a_ 155 RHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARAD---VVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 231 (373)
T ss_dssp HHHHHTTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCS---EEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC---CEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 111220367336789716764420467999998751887---32320235047779999998457656640125545248
Q ss_pred HHHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 12221101005525740225787789899999999999708898--7568999999999999999618998899999996
Q T0528 252 LPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPP--DFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAME 329 (388)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p--~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~ 329 (388)
...........|......+ ....++|.+++|+++|+++|+..| +.++..+||+++++++|++++|+.|+++|+++|+
T Consensus 232 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~ 310 (373)
T d1qo0a_ 232 EVAKMESDVAEGQVVVAPY-FSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLY 310 (373)
T ss_dssp HHTTSCHHHHTTCEEEESC-CTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEECCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7764444430572010244-200002778999999998739878877079999999999999999868999999999985
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC--EEECCCCCCCCCCH
Q ss_conf 1875553247897247885024379999985682--42021212231787
Q T0528 330 GMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA--VAWAVLEPVRELKI 377 (388)
Q Consensus 330 ~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~v~~~~~ 377 (388)
+++|+|++|+++|++++||..++++|.|++.||. +.|....||++-|.
T Consensus 311 ~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~ 360 (373)
T d1qo0a_ 311 DIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 360 (373)
T ss_dssp SCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTT
T ss_pred CCCEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 59530783659983899834686699999369958999606983679997
No 2
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=343.60 Aligned_cols=340 Identities=19% Similarity=0.204 Sum_probs=292.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
|+||||++.|+||+++.+|.++.+|+++|++++|+.|| +.||+|+++++|++++|..+.+++++|+++ ++.+++|+.+
T Consensus 1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~gg-i~G~~i~lv~~D~~~~p~~a~~~~~~li~~-~~~~vig~~~ 78 (346)
T d1usga_ 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGG-IKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHLC 78 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT-BTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCC
T ss_conf 93899998488784377689999999999999987499-889378999955999989999999999966-9963217756
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHH
Q ss_conf 13377888999864977864267761015777653489734765788899999997--1893899985487432234789
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG--KQGVTIATLAQDYAFGRDGVAA 174 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~~g~~~~~~ 174 (388)
|..+.++.+++.+.++|+++++++++.+.. ...+++|++.++...+......+.. .+++++++++.+++|++.....
T Consensus 79 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~ 157 (346)
T d1usga_ 79 SSSTQPASDIYEDEGILMISPGATNPELTQ-RGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 157 (346)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCCCGGGGS-SCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 753035666544203455566657704412-5763300033321267888886432114551257732740464999998
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH
Q ss_conf 99999863985998410175433128999999984335764589996052078999999971530036211235530122
Q T0528 175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPA 254 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (388)
+++.+++.|++++....+++.++|+++++.++++.++| .+++.........++.++.+.+.+...+...........
T Consensus 158 ~~~~~~~~g~~i~~~~~~~~~~~d~~~~~~~i~~~~~d---~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (346)
T d1usga_ 158 VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID---FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLS 234 (346)
T ss_dssp HHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCCTTHH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCC---EEEEECCCHHHHHEEECCCCCCCCCEEEEEEECCCCCHH
T ss_conf 76554134422798873471001003577786446987---899956636665413001244556427754321572022
Q ss_pred HHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 21101005525740225787789899999999999708898756899999999999999961899889999999618755
Q T0528 255 LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFD 334 (388)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~ 334 (388)
........|......+.+. .++..+.|.+.|+++++..|+.++..+||+++++++|++++|+.++++|+++|++.+|+
T Consensus 235 ~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~a~~~Yda~~~la~Al~~ags~d~~~l~~al~~~~~~ 312 (346)
T d1usga_ 235 NIAGDAAEGMLVTMPKRYD--QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGAN 312 (346)
T ss_dssp HHHGGGGTTCEEEECCCGG--GSGGGHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEE
T ss_pred HHHHCCCCCEEEECCCCCC--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 2100110220231146777--67212699999999747999825799999999999999988899899999999728986
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCCE
Q ss_conf 532478972478850243799999856824
Q T0528 335 TPKGKMVFRKEDHQALQSMYHFKVKVDPAV 364 (388)
Q Consensus 335 g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~ 364 (388)
|++|+++||+++++...+++|+|++.||..
T Consensus 313 g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~~ 342 (346)
T d1usga_ 313 TVIGPLNWDEKGDLKGFDFGVFQWHADGSS 342 (346)
T ss_dssp ETTEEECBCTTSSBSSCCCEEEEECTTSCE
T ss_pred CCEEEEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf 663889999996827898799999749859
No 3
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.2e-44 Score=280.27 Aligned_cols=345 Identities=10% Similarity=0.033 Sum_probs=261.3
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEECCCCHHHHHHHHHHHHH--CCC
Q ss_conf 356835899982466770567899999999999999855797----69858999997278898999999999986--488
Q T0528 14 HAADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMT----LDGRKIVVITKDDQSKPDLSKAALAEAYQ--DDG 87 (388)
Q Consensus 14 ~a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~----i~Gr~i~lv~~D~~~~~~~a~~~~~~li~--~~~ 87 (388)
...++||||+++|+||+++..|..+.+|++||++++|+.||. ++|++|+++++|++|+|..+.+.+++|+. +++
T Consensus 3 ~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~ 82 (401)
T d1jdpa_ 3 LPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAK 82 (401)
T ss_dssp CCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89972289999779994022167899999999999986678655678994899999828999799999999999736688
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-CCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 5121147751337788899986497786426776101577-7653489734765788899999997-1893899985487
Q T0528 88 ADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGE-KWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY 165 (388)
Q Consensus 88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~ 165 (388)
|.+|+||.+|..+.++++++++.++|+|+++++++.++.. ..++++||+.+++..++.+++.++. .+|+++++|++|+
T Consensus 83 v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d 162 (401)
T d1jdpa_ 83 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 162 (401)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 08999998750367887888861985463144554212234567727983154688999999987751773799999568
Q ss_pred HHHHHHHHHHHHHH---HHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCC
Q ss_conf 43223478999999---863985998410175433128999999984335764589996052078999999971530036
Q T0528 166 AFGRDGVAAFKEAL---AKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYG 242 (388)
Q Consensus 166 ~~g~~~~~~~~~~~---~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
.+|+.....++... ...+..+......+.+..++...+..+. .. +..+++.........++.+..+.+.....
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iv~~~~~~~~~~i~~~~~~~g~~~~~ 238 (401)
T d1jdpa_ 163 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-AS---ERVVIMCASSDTIRSIMLVAHRHGMTSGD 238 (401)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-HH---CSEEEEESCHHHHHHHHHHHHHTTCTTTT
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHC-CC---CEEEEEEECHHHHHHHHHHHHHHCCCCCC
T ss_conf 652057899998888736534899740245676268999998632-57---40699993468899999999981888887
Q ss_pred CCCCCC---CCHH-----------HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-------CCHHHHH
Q ss_conf 211235---5301-----------222110100552574022578778989999999999970889-------8756899
Q T0528 243 IELSTG---GNIL-----------PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAP-------PDFFTAG 301 (388)
Q Consensus 243 ~~~~~~---~~~~-----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-------p~~~a~~ 301 (388)
..+... .... ..........++.. .....+.++..+.|.++|++.++.. ++.++..
T Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~ 315 (401)
T d1jdpa_ 239 YAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQT---VTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG 315 (401)
T ss_dssp CEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEE---EEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHH
T ss_pred EEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 69996331146433473010255423678888654142---124588986899999999999840677766662078899
Q ss_pred HHHHHHHHHHHHHHH----C-CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 999999999999961----8-9988999999961875553247897247885024379999985682420
Q T0528 302 GFSAAMAVVTAVQKA----K-STDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVAW 366 (388)
Q Consensus 302 ~Yda~~~~~~Ai~~a----g-~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~~~ 366 (388)
+||+++++++|++++ + ..++++++++|++++|+|++|+++||++ ++...++.+++++....+.|
T Consensus 316 ~yDav~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~-Gdr~~~~~~~~~~~~~~g~~ 384 (401)
T d1jdpa_ 316 FHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDAN-GDRYGDFSVIAMTDVEAGTQ 384 (401)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTT-SBBCCEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEEECCCCEE
T ss_conf 9999999999999998568999889999999867917717668998999-88257679999999789879
No 4
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2.6e-42 Score=269.60 Aligned_cols=334 Identities=12% Similarity=0.041 Sum_probs=254.6
Q ss_pred CEEEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC-----CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 358999824667705-67899999999999999855797698589999972788-----989999999999864885121
Q T0528 18 DLKIALIYGKTGPLE-AYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQS-----KPDLSKAALAEAYQDDGADIA 91 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a-~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~-----~~~~a~~~~~~li~~~~v~~i 91 (388)
.||||+++|+||... ..|..+..|+++|+++||++||.++|++|+++++|+++ ++..+...+.+++.+++|.+|
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai 81 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 47999997887965444445599999999999985889899958999999788865566978999999999752898699
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHH
Q ss_conf 1477513377888999864977864267761015777653489734765788899999997-189389998548743223
Q T0528 92 IGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRD 170 (388)
Q Consensus 92 ~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~ 170 (388)
+||.+|..+.++++++.+.++|+|+++++++.++++..++++||+.+++..+..++..++. .+|+++++++.++.+|+.
T Consensus 82 iG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~ 161 (425)
T d1dp4a_ 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (425)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 99987177665336667529768753035455555556775344444411788899999986047559999843665553
Q ss_pred H------HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCC
Q ss_conf 4------7899999986398599841017543312899999998433576458999605207899999997153003621
Q T0528 171 G------VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIE 244 (388)
Q Consensus 171 ~------~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
. ...++....+.+.++.....++....++...+..+.. . +..+++.........++.++.+.+.......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~---~~~vi~~~~~~~~~~~~~~a~~~g~~~~~~v 237 (425)
T d1dp4a_ 162 RPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR-K---GRVIYICSSPDAFRNLMLLALNAGLTGEDYV 237 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHHHHH-H---CSEEEEESCHHHHHHHHHHHHHTTCCTTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHH-C---CEEEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 03677777888998873556986652047754689999998640-5---3169995064477799999998377788669
Q ss_pred CCCCCCHH--------------------HHHHCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH----H-----CCCC
Q ss_conf 12355301--------------------22211010055257402257877898999999999997----0-----8898
Q T0528 245 LSTGGNIL--------------------PALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKR----F-----NAPP 295 (388)
Q Consensus 245 ~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~----~-----g~~p 295 (388)
+....... ..........+... ..+..+.++..+.|.+++++. + +..+
T Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (425)
T d1dp4a_ 238 FFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKI---ITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (425)
T ss_dssp EEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEE---EEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHEEE---ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 998554445321246633346442033104678988765355---11478898578899999999750347987555564
Q ss_pred CHHHHHHHHHHHHHHHHHHHH----C-CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf 756899999999999999961----8-998899999996187555324789724788502437999998
Q T0528 296 DFFTAGGFSAAMAVVTAVQKA----K-STDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVK 359 (388)
Q Consensus 296 ~~~a~~~Yda~~~~~~Ai~~a----g-~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~ 359 (388)
+.++...||++++++.|++++ + ..+++.+.++|++++|+|++|+++||++ ++....+.|+.+.
T Consensus 315 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~n-Gdr~~~y~i~~~~ 382 (425)
T d1dp4a_ 315 NIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN-GDRDTDFSLWDMD 382 (425)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT-SBBCCCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCC-CCCCCCEEEEEEE
T ss_conf 4688999999999999999998657998889999998718848618756998889-9813526999997
No 5
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2.6e-35 Score=227.55 Aligned_cols=341 Identities=15% Similarity=0.121 Sum_probs=254.1
Q ss_pred CCEEEEEEECCCC-------------CH-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 8358999824667-------------70-567899999999999999855797698589999972788989999999999
Q T0528 17 DDLKIALIYGKTG-------------PL-EAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEA 82 (388)
Q Consensus 17 ~~IkIG~~~p~sG-------------~~-a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~l 82 (388)
-.|.||.++|+-. .. ...|.....++.+|+|+||+....|+|.++.+.++|+.+++..+++.+.++
T Consensus 8 Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~~~~ 87 (477)
T d1ewka_ 8 GDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEF 87 (477)
T ss_dssp CSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 99899999888475777778865554635423589999999999998589976899889799997589847999999999
Q ss_pred HH----------------------------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 86----------------------------48851211477513377888999864977864267761015777653489
Q T0528 83 YQ----------------------------DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIF 134 (388)
Q Consensus 83 i~----------------------------~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~ 134 (388)
+. ...+.+|+||.+|..+.+++.++..+++|+|+++++++.++++..+|+++
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~ 167 (477)
T d1ewka_ 88 IRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFL 167 (477)
T ss_dssp HC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEE
T ss_conf 98522133212466531056876466534566449998987415678888875212582633555884556645488649
Q ss_pred EECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHCC
Q ss_conf 734765788899999997-18938999854874322347899999986398599841017--543312899999998433
Q T0528 135 RTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALK 211 (388)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~ 211 (388)
|+.|++..++.+++..+. .+|++|++|+.++++|+.....+++.+++.|++|...+.++ .+..++..++.+++....
T Consensus 168 Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~ 247 (477)
T d1ewka_ 168 RVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLP 247 (477)
T ss_dssp ESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTT
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 80066134689999999972986899998516457788999999998769379998613577760267888887764135
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCC---HHHHHHCHHHCCCEEEEECCCC---------------C
Q ss_conf 576458999605207899999997153003621123553---0122211010055257402257---------------8
Q T0528 212 DKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGN---ILPALAAYKRLPGMEGATYYYY---------------D 273 (388)
Q Consensus 212 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~---------------~ 273 (388)
...++++.........++.++...+......++..... ............+......... .
T Consensus 248 -~~rVIv~~~~~~~~~~ll~~a~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 326 (477)
T d1ewka_ 248 -KARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDT 326 (477)
T ss_dssp -TCCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred -CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf -7508998147899999999999757657743999634345312203444335762576532433166899998547565
Q ss_pred CCCCHHHHHHHHHHHHHHCC--------------------------CCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 77898999999999997088--------------------------98756899999999999999961-----------
Q T0528 274 IPKNPINEWLVTEHQKRFNA--------------------------PPDFFTAGGFSAAMAVVTAVQKA----------- 316 (388)
Q Consensus 274 ~~~~~~~~~f~~~~~~~~g~--------------------------~p~~~a~~~Yda~~~~~~Ai~~a----------- 316 (388)
.+.++..++| |+.+|+- .++.++.+.|||++++|.||.+.
T Consensus 327 ~~~n~~~~~~---w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~~~ 403 (477)
T d1ewka_ 327 NTRNPWFPEF---WQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGL 403 (477)
T ss_dssp CCSCTTHHHH---HHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSC
T ss_pred CCCCHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7788679999---9998588765223467652223452221345334536899999999999999999987237787776
Q ss_pred ----CCCCHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEECC
Q ss_conf ----8998899999996187555324-789724788502437999998568
Q T0528 317 ----KSTDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 317 ----g~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
...++..+.+.|++++|+|++| ++.||.+ ++....+.|++++...
T Consensus 404 ~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~n-Gd~~~~y~I~n~q~~~ 453 (477)
T d1ewka_ 404 CDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEK-GDAPGRYDIMNLQYTE 453 (477)
T ss_dssp CGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTT-SCCCCCEEEEEEEECS
T ss_pred CCCCCCCCHHHHHHHHHCCEEECCCCCEEEECCC-CCCCCEEEEEEEEECC
T ss_conf 6578768999999998237417899998997999-9803307999999878
No 6
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=1.5e-36 Score=234.95 Aligned_cols=308 Identities=11% Similarity=0.027 Sum_probs=225.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
|||+++|+||+++.+|+.+++|+++|++ |++|+|+++|++++|..+ +.+++.++++.+|+||.+|..
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~a---a~~~l~~~~v~~iiGp~~s~~ 68 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQN 68 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC----------CCCCEEEEECCCCCHHHH---HHHHHHHCCCEEEEECCCCCC
T ss_conf 1999938988537889999999998657----------998359997299999999---999999769909998256400
Q ss_pred HHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 7788899-9864977864267761015777653489734765788899999997-1893899985487432234789999
Q T0528 100 ALADLPV-AEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDYAFGRDGVAAFKE 177 (388)
Q Consensus 100 ~~~~~~~-~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~~g~~~~~~~~~ 177 (388)
+.++.+. .+...+|++...++ +.. ...+++|++.++...++..++.++. ++++++++++++++||+.....+++
T Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~ 144 (317)
T d3ckma1 69 LDVILADPAQIQGMDVLALNAT-PNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 144 (317)
T ss_dssp HHHHHHCGGGGTTCEEEESCCC-TTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCC-CCC---CCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 6788899986168538841345-554---333535872167789988877665530333358933644110667999999
Q ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHCCCCCCCCCCH--HHHH
Q ss_conf 99863985998410175433128999999984335764589996052078999999971530036211235530--1222
Q T0528 178 ALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNI--LPAL 255 (388)
Q Consensus 178 ~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 255 (388)
.+++.|++|+....++..+.++. +...+ ...++.+++.........++.++...+.............. ....
T Consensus 145 ~~~~~G~~v~~~~~~~~~~~~~~--~~~~~---~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 219 (317)
T d3ckma1 145 RWQQLAGTDANIRYYNLPADVTY--FVQEN---NSNTTALYAVASPTELAEMKGYLTNIVPNLAIYASSRASASATNTNT 219 (317)
T ss_dssp HHHHHHSSCCEEEEESSTTHHHH--HHHHS---CTTCCEEEECCCHHHHHHHHHHHTTTCTTCEEEECGGGCCHHHHTCH
T ss_pred HHHHCCCEEEEEEECCCCCHHHH--HHHHC---CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 99986997989984156522344--43211---25763699951706778999999974256640211122357500011
Q ss_pred HCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 11010055257402257877898999999999997088987568999999999999999618998899999996187555
Q T0528 256 AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDT 335 (388)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Ai~~ag~~~~~~v~~aL~~~~~~g 335 (388)
.......|..+....+...++++....|.+.|+..++..| +++.+||++++++.+.+ .+.+.+..|+|
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~gyDa~~l~~~~~~----------~~~~~~~~~~G 287 (317)
T d3ckma1 220 DFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQLMR--LYAMGADAWLLINQFNE----------LRQVPGYRLSG 287 (317)
T ss_dssp HHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHHHH--HHHHHHHHHHHHHTHHH----------HHHSTTCCEEE
T ss_pred HHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHH----------HHCCCCCCEEC
T ss_conf 0455415957723665678887789999998873179980--19999999999999999----------72167997265
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 324789724788502437999998568
Q T0528 336 PKGKMVFRKEDHQALQSMYHFKVKVDP 362 (388)
Q Consensus 336 ~~G~i~f~~~~~~~~~~~~i~~~~~~~ 362 (388)
++|+++||+ +|+..+++++.|++.+.
T Consensus 288 ~tG~~~fd~-~G~~~r~~~~~~~~~G~ 313 (317)
T d3ckma1 288 LTGILSADT-NCNVERDMTWYQYQDGA 313 (317)
T ss_dssp TTEEEEECT-TCBEEEECEEEEEETTE
T ss_pred CEEEEEECC-CCCEEECCEEEEEECCE
T ss_conf 848899999-99882241699998999
No 7
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=98.78 E-value=4.7e-06 Score=51.93 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=102.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf 3589998246677056789999999999999985579769858999997278898999999999986488512-114775
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSS 96 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~ 96 (388)
.+|||+++|.... .+-..+..|++-+.+ +.+| +++++.|.+.++..-.+.+++|+++ ++++ ++.+..
T Consensus 1 ~~kIgv~~~~~~~--~f~~~i~~gi~~~a~---~~~~------~~l~~~~~~~~~~~q~~~i~~li~~-~vDgiii~~~~ 68 (305)
T d2fvya1 1 DTRIGVTIYKYDD--NFMSVVRKAIEQDAK---AAPD------VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVD 68 (305)
T ss_dssp CEEEEEEESCTTS--HHHHHHHHHHHHHHH---TCTT------EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSS
T ss_pred CCEEEEEECCCCC--HHHHHHHHHHHHHHH---HCCC------CEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 9499999689989--999999999999998---7699------0899971899999999999999975-99889840212
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-------------CCCEEEEEEC
Q ss_conf 133778889998649778642677610157776534897347657888999999971-------------8938999854
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-------------QGVTIATLAQ 163 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~ 163 (388)
+.........+...++|++........... ...+.......+....+.....++.+ +.++++++..
T Consensus 69 ~~~~~~~~~~~~~~~ipvv~~~~~~~~~~~-~~~~~~~~V~~dn~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~i~g 147 (305)
T d2fvya1 69 PAAAGTVIEKARGQNVPVVFFNKEPSRKAL-DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 147 (305)
T ss_dssp GGGHHHHHHHHHTTTCCEEEESSCCCHHHH-HTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEEC
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
T ss_conf 223379999987448733654201222343-3578750998571999999999999974421331112579846999947
Q ss_pred C--CHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 8--7432234789999998639859984101
Q T0528 164 D--YAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 164 d--~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
+ ......-...+...+++.|.+.......
T Consensus 148 ~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~ 178 (305)
T d2fvya1 148 EPGHPDAEARTTYVIKELNDKGIKTEQLQLD 178 (305)
T ss_dssp STTCHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8766505777888887765048753320476
No 8
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=98.53 E-value=2.6e-05 Score=47.49 Aligned_cols=213 Identities=11% Similarity=0.071 Sum_probs=123.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 5683589998246677056789999999999999985579769858999997278898999999999986488512-114
Q T0528 15 AADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIG 93 (388)
Q Consensus 15 a~~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G 93 (388)
...+++||+++|-.. ...+-..+..|++.++++. | . ...+.....++..|+..-.+..+.++.+ ++++ |+.
T Consensus 37 ~~k~~~I~vi~p~~~-~~~f~~~~~~~~~~~~~~~---g--~-~~~i~~~~~~s~~d~~~q~~~i~~~i~~-~vDgIIi~ 108 (338)
T d1jx6a_ 37 TQRPIKISVVYPGQQ-VSDYWVRNIASFEKRLYKL---N--I-NYQLNQVFTRPNADIKQQSLSLMEALKS-KSDYLIFT 108 (338)
T ss_dssp CSSCEEEEEEECCCS-SCCHHHHHHHHHHHHHHHT---T--C-CEEEEEEECCTTCCHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred CCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHC---C--C-CEEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 289868999989998-7789999999999999975---9--9-5799998648988999999999999964-99989993
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-C--CCEEEEEECCCHH-HH
Q ss_conf 775133778889998649778642677610157776534897347657888999999971-8--9389998548743-22
Q T0528 94 TSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK-Q--GVTIATLAQDYAF-GR 169 (388)
Q Consensus 94 ~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~i~~d~~~-g~ 169 (388)
+..+.....+...+.+.++|++.......... ...++.......+....+...+.++.. + .++++++...... ..
T Consensus 109 ~~~~~~~~~i~~~~~~~~ipvv~~~~~~~~~~-~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~~~ 187 (338)
T d1jx6a_ 109 LDTTRHRKFVEHVLDSTNTKLILQNITTPVRE-WDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISD 187 (338)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGG-GTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC-CCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
T ss_conf 68643269999999828982999826776443-23477760996377999999999999737897289998064342229
Q ss_pred HHHHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 34789999998639-8599841017543312899999998433576458999605207899999997153
Q T0528 170 DGVAAFKEALAKTG-ATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 170 ~~~~~~~~~~~~~g-~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
.-...|+.++++.+ .+++...........-...+.++....++ +. .+++..-..+...+..+.+.+.
T Consensus 188 ~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-ai~~~nd~~A~g~~~al~~~G~ 255 (338)
T d1jx6a_ 188 VRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPD-VD-FIYACSTDVALGAVDALAELGR 255 (338)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCCSSHHHHHHHHHHHHHHCCC-CS-EEEESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCC-CC-CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999998500444210221321378899999987642212-33-1344564567654101244530
No 9
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=98.36 E-value=6.8e-05 Score=44.94 Aligned_cols=208 Identities=11% Similarity=-0.020 Sum_probs=109.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf 3589998246677056789999999999999985579769858999997278898999999999986488512-114775
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSS 96 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~ 96 (388)
.||||++.+-.. ..+-..+..|++.+.++. |.++ +..+ ..|++.-.+.++.++.+ ++++ |+.+..
T Consensus 1 ~~kIg~v~~~~~--~p~~~~~~~g~~~aa~~~--------G~~~--i~~~-~~d~~~q~~~i~~li~~-~vDgiIi~~~~ 66 (305)
T d8abpa_ 1 NLKLGFLVKQPE--EPWFQTEWKFADKAGKDL--------GFEV--IKIA-VPDGEKTLNAIDSLAAS-GAKGFVICTPD 66 (305)
T ss_dssp CEEEEEEESCTT--SHHHHHHHHHHHHHHHHH--------TEEE--EEEE-CCSHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred CEEEEEEECCCC--CHHHHHHHHHHHHHHHHC--------CCEE--EEEC-CCCHHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf 959999969988--889999999999999973--------9989--9983-99999999999999975-99989983643
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH----HHHCC----CEEEEEEC--CCH
Q ss_conf 133778889998649778642677610157776534897347657888999999----97189----38999854--874
Q T0528 97 SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA----IGKQG----VTIATLAQ--DYA 166 (388)
Q Consensus 97 S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~v~~i~~--d~~ 166 (388)
..........+.+.++|++......... .......+.....+........+.+ ..+++ ....++.. +..
T Consensus 67 ~~~~~~~~~~a~~~giPVV~~d~~~~~~-~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 145 (305)
T d8abpa_ 67 PKLGSAIVAKARGYDMKVIAVDDQFVNA-KGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 145 (305)
T ss_dssp GGGHHHHHHHHHHTTCEEEEESSCCBCT-TSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 3366999999996599889975754444-444467664563057799999999999984532366662599983898770
Q ss_pred HHHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH
Q ss_conf 322347899999986398---59984101754331289999999843357645899960520789999999715300
Q T0528 167 FGRDGVAAFKEALAKTGA---TLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKR 240 (388)
Q Consensus 167 ~g~~~~~~~~~~~~~~g~---~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
....-...++..+++.+. +++...........-....+.+....++....+++...-....-.+.++.+.+...
T Consensus 146 ~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~~~G~~~ 222 (305)
T d8abpa_ 146 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 222 (305)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999852145433101147752034677788640247876643123310688998788998754147
No 10
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=98.13 E-value=0.00021 Score=41.97 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=114.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf 8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~ 98 (388)
+||+++|-- . ..+-..+..|++-+.++. |. ++++.++..++..-.+.++.++.+ ++++++ .+....
T Consensus 3 tIgvvvp~~-~-~~f~~~~~~gi~~~a~~~--------g~--~~~i~~~~~~~~~~~~~i~~~~~~-~~d~ii~~~~~~~ 69 (271)
T d2dria_ 3 TIALVVSTL-N-NPFFVSLKDGAQKEADKL--------GY--NLVVLDSQNNPAKELANVQDLTVR-GTKILLINPTDSD 69 (271)
T ss_dssp EEEEEESCS-S-SHHHHHHHHHHHHHHHHH--------TC--EEEEEECTTCHHHHHHHHHHHTTT-TEEEEEECCSSTT
T ss_pred EEEEEECCC-C-CHHHHHHHHHHHHHHHHC--------CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf 899993889-8-989999999999999974--------99--899996899999999999999862-8763112122232
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEEEEEC--CCHHHHHHHH
Q ss_conf 3778889998649778642677610157776534897347657888999999971---8938999854--8743223478
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK---QGVTIATLAQ--DYAFGRDGVA 173 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i~~--d~~~g~~~~~ 173 (388)
........+.+.++|++....... .. ........+........+.++.+ +..+++++.. +....+.-..
T Consensus 70 ~~~~~~~~~~~~~ipvV~~~~~~~---~~---~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 143 (271)
T d2dria_ 70 AVGNAVKMANQANIPVITLDRQAT---KG---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGE 143 (271)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCS---SS---CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEEECCCCC---CC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 147899997514215898436655---55---441388521336699999999996699967999968988778999987
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 9999998639859984101754331289999999843357645899960520789999999715
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
.++..+...+......................+....++ +.. ++...-....-.+..+.+.+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a-i~~~~d~~a~g~~~al~~~g 205 (271)
T d2dria_ 144 GFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD-VQA-VFAQNDEMALGALRALQTAG 205 (271)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCHHHHHHHHHHHHHHCTT-CCE-EEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCC-CEE-EECCCHHHHHHHHHHHHHHC
T ss_conf 488775123344421000010233200057788741568-507-96156787889999999838
No 11
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=97.92 E-value=0.00055 Score=39.52 Aligned_cols=198 Identities=11% Similarity=-0.035 Sum_probs=109.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 58999824667705678999999999999998557976985899999727-88989999999999864885121147751
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDD-QSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~-~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
..||+++|--.. ..+ ..+..|++-+.++ . |+.+ ++.++ .+++..-.+..++|+.+ ++++++-....
T Consensus 1 ~~igv~~~~l~~-~~~-~~i~~~i~~~a~~---~-----Gy~v--~v~~~~~~~~~~~~~~l~~l~~~-~vdgiIl~~~~ 67 (271)
T d1jyea_ 1 LLIGVATSSLAL-HAP-SQIVAAILSRADQ---L-----GASV--VVSMVERSGVEACKTAVHNLLAQ-RVSGLIINYPL 67 (271)
T ss_dssp CEEEEEESCTTS-HHH-HHHHHHHHHHHHH---T-----TCEE--EEEECCSSSHHHHHHHHHHHHTT-TCSCEEEESCC
T ss_pred CEEEEEECCCCC-HHH-HHHHHHHHHHHHH---C-----CCEE--EEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf 989999499887-589-9999999999998---5-----9989--99979999999999999999965-99989951666
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC--CHHHHHHHHH
Q ss_conf 337788899986497786426776101577765348973476578889999999-7189389998548--7432234789
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD--YAFGRDGVAA 174 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d--~~~g~~~~~~ 174 (388)
.........+...++|++..... . +.. .++ ...+....+...+.++ .++.+++++|..+ ....+.-...
T Consensus 68 ~~~~~~~~~~~~~~iPvV~~d~~-~---~~~-~~~---V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 139 (271)
T d1jyea_ 68 DDQDAIAVEAACTNVPALFLDVS-D---QTP-INS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 139 (271)
T ss_dssp CHHHHHHHHHHTTTSCEEESSSC-T---TSS-SCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEECC-C---CCC-CCC---CCCCHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 74269999998639984431023-4---456-773---343311022100012201124543322234455157765678
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 99999863985998410175433128999999984335764589996052078999999971530
Q T0528 175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
+++.+++.+.........+.+..+....+.++....+ .+. .++..........+..+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-ai~~~~~~~a~~~~~~l~~~g~~ 202 (271)
T d1jyea_ 140 WHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGI-VPT-AMLVANDQMALGAMRAITESGLR 202 (271)
T ss_dssp HHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHHHTTC-CCS-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHCCC-CCC-HHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 8777664135421000011111124420223331245-652-11123204445787867875056
No 12
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.49 E-value=0.0025 Score=35.58 Aligned_cols=197 Identities=12% Similarity=0.032 Sum_probs=102.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512-11477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADI-AIGTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~-i~G~~~S~ 98 (388)
+||+++|-.+ ..+-.++.+|++-+..+ .| . ++++.++..+++...+..+.|+.+ ++++ |+.+....
T Consensus 2 tIg~i~~~~~--~pf~~~~~~gi~~~~~~---~g-----y--~~~~~~~~~d~~~~~~~~~~l~~~-~vdgiIi~~~~~~ 68 (282)
T d1dbqa_ 2 SIGLLATSSE--AAYFAEIIEAVEKNCFQ---KG-----Y--TLILGNAWNNLEKQRAYLSMMAQK-RVDGLLVMCSEYP 68 (282)
T ss_dssp EEEEEESCTT--SHHHHHHHHHHHHHHHH---HT-----C--EEEEEECTTCHHHHHHHHHHHHHT-TCSEEEEECSCCC
T ss_pred EEEEEECCCC--CHHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf 8999957797--78999999999999998---69-----9--999996899989999999999966-9987863112243
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCCHH--HHHHHHHH
Q ss_conf 3778889998649778642677610157776534897347657888999999-97189389998548743--22347899
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVA-IGKQGVTIATLAQDYAF--GRDGVAAF 175 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~~--g~~~~~~~ 175 (388)
. ..........++|++........ .. +......+..........+ ...+.++++++...... .......+
T Consensus 69 ~-~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~ 141 (282)
T d1dbqa_ 69 E-PLLAMLEEYRHIPMVVMDWGEAK---AD---FTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 141 (282)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSCC---SS---SCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred C-HHHHHHHHHCCCCCEEEEECCCC---CC---CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 1-35666776437972699831366---53---45089741332034444432033322122346873004566666668
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 9999863985998410175433128---999999984335764589996052078999999971530
Q T0528 176 KEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
....++.+.......... ...+.. ....++....+ .+. .++..........+..+...+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~-~~~-ai~~~~d~~a~g~~~~l~~~g~~ 205 (282)
T d1dbqa_ 142 MKAMEEAMIKVPESWIVQ-GDFEPESGYRAMQQILSQPH-RPT-AVFCGGDIMAMGALCAADEMGLR 205 (282)
T ss_dssp HHHHHHTTCCCCGGGBCC-CCSSHHHHHHHHHHHHTSSS-CCS-EEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCEEEEE-CCCCHHHHHHHHHHHHHCCC-CCC-EEEEECCHHHHHHHHHHHHCCCC
T ss_conf 888760277766137983-46311447999999984799-995-58985155666577888760688
No 13
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.26 E-value=0.0047 Score=33.89 Aligned_cols=205 Identities=10% Similarity=-0.007 Sum_probs=114.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCH
Q ss_conf 8999824667705678999999999999998557976985899999727889899999999998648851211-477513
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI-GTSSSA 98 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~-G~~~S~ 98 (388)
+.+++.|-- .... -..+.+|++-+.++. |.++.+...++..|+..-.+..++++.+ ++++|+ .+..+.
T Consensus 3 ~~a~i~~~~-~npf-f~~i~~g~~~~a~~~--------g~~~~i~~~~~~~d~~~q~~~i~~~i~~-~~DgIi~~~~~~~ 71 (288)
T d1guda_ 3 EYAVVLKTL-SNPF-WVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPLSSV 71 (288)
T ss_dssp EEEEEESCS-SSHH-HHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCSSSS
T ss_pred EEEEEECCC-CCHH-HHHHHHHHHHHHHHC--------CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf 799996989-8889-999999999999973--------9979999658989999999999999966-9998997247840
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHH----HHHCCCEEEEEECC--CHHHHHH
Q ss_conf 3778889998649778642677610-157776534897347657888999999----97189389998548--7432234
Q T0528 99 AALADLPVAEENKKILIVEPAVADQ-ITGEKWNRYIFRTGRNSSQDAISNAVA----IGKQGVTIATLAQD--YAFGRDG 171 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~i~~d--~~~g~~~ 171 (388)
........+.+.++|++.....-.. .......+.......+....+.....+ ...+..++.++..+ ....+.-
T Consensus 72 ~~~~~l~~~~~~gipvv~~d~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~r 151 (288)
T d1guda_ 72 NLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 151 (288)
T ss_dssp TTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHH
T ss_conf 21289999972897499967887643333347870169945789999999999999706677446314788533045678
Q ss_pred HHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 78999999863-9859984101754331289999999843357645899960520789999999715
Q T0528 172 VAAFKEALAKT-GATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 172 ~~~~~~~~~~~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
...+....... +.+++.......+..........+....++ +. .++........-.+..+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-ai~~~~d~~a~g~~~al~~~g 216 (288)
T d1guda_ 152 RNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPN-IK-AIYCANDTMAMGVAQAVANAG 216 (288)
T ss_dssp HHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT-CC-EEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCC-CC-EEECCCCHHHHHHHHHHHHCC
T ss_conf 876531312223454330220310256799888876405765-21-344148789999999999759
No 14
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=96.83 E-value=0.012 Score=31.46 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=104.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
+=+||+++|--. ..+-..+..|++-++++ .| . ++++++...+++.-.+....++.. ++++++-....
T Consensus 3 t~tIgvvvp~l~--~~f~~~~~~gi~~~~~~---~g-----~--~~~~~~~~~~~~~e~~~i~~~~~~-~vdgii~~~~~ 69 (275)
T d2nzug1 3 TTTVGVIIPDIS--NIFYAELARGIEDIATM---YK-----Y--NIILSNSDQNQDKELHLLNNMLGK-QVDGIIFMSGN 69 (275)
T ss_dssp CSEEEEEESCTT--SHHHHHHHHHHHHHHHH---TT-----C--EEEEEECTTCHHHHHHHHHHHHTT-CCSEEEECCSC
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEECCCCC
T ss_conf 889999978887--98999999999999998---69-----9--899997899979999999999840-87503204520
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECCC--H-HHHHHHH
Q ss_conf 337788899986497786426776101577765348973476578889999999-71893899985487--4-3223478
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQDY--A-FGRDGVA 173 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~--~-~g~~~~~ 173 (388)
. .........+.++|++....... . ... .....+....+...+.++ .++.++++++..+. . .......
T Consensus 70 ~-~~~~~~~l~~~~~pvv~~~~~~~---~-~~~---~~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~ 141 (275)
T d2nzug1 70 V-TEEHVEELKKSPVPVVLAASIES---T-NQI---PSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVK 141 (275)
T ss_dssp C-CHHHHHHHHHCSSCEEEESCCCT---T-CCS---CEEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHH
T ss_pred H-HHHHHHHHHHCCCCCCCCCCCCC---C-CCC---CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 0-04789997522544333455443---3-332---12343343321478899887525515899348654315667777
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCH
Q ss_conf 999999863985998410175433128---999999984335764589996052078999999971530
Q T0528 174 AFKEALAKTGATLATEEYVPTTTTDFT---AVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPK 239 (388)
Q Consensus 174 ~~~~~~~~~g~~vv~~~~~~~~~~d~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.+..+..+.|.++...... ....+.. ....++....+ .+. .++...-..+...+..+...+..
T Consensus 142 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-ai~~~~d~~A~g~~~~l~~~g~~ 207 (275)
T d2nzug1 142 GYKRALTESGLPVRDSYIV-EGDYTYDSGIEAVEKLLEEDE-KPT-AIFVGTDEMALGVIHGAQDRGLN 207 (275)
T ss_dssp HHHHHHHHTTCCCCGGGEE-ECCSSHHHHHHHHHHHHTSSS-CCS-EEEESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHCCCCCCCCEEE-ECCCCHHHHHHHHHHHHHCCC-CCE-EEEECCHHHHHHHHHHHHHCCCC
T ss_conf 8999999839997700588-336887888999999984499-971-89846747777799987653998
No 15
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=96.82 E-value=0.012 Score=31.45 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=95.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147751
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSS 97 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S 97 (388)
.-|||++.|..+. .+-..+.+|++.+.++. |.++.+ ...+..|++.-.+.++.++.+..-.+|+.+..+
T Consensus 3 ~~kI~~i~~~~~n--pf~~~~~~g~~~~a~~~--------G~~v~~-~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~ 71 (316)
T d1tjya_ 3 AERIAFIPKLVGV--GFFTSGGNGAQEAGKAL--------GIDVTY-DGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP 71 (316)
T ss_dssp CCEEEEECSSSSS--HHHHHHHHHHHHHHHHH--------TCEEEE-CCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCEEEEEECCCCC--HHHHHHHHHHHHHHHHC--------CCEEEE-EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8899999389999--89999999999999981--------997999-979999999999999999965998664114432
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCEEEEEECCC--HHHHHHH
Q ss_conf 3377888999864977864267761015777653489734765788899999997---1893899985487--4322347
Q T0528 98 AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG---KQGVTIATLAQDY--AFGRDGV 172 (388)
Q Consensus 98 ~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~d~--~~g~~~~ 172 (388)
.........+.+.++|++...+.... ... ..+.....+............. ....++.++.... .......
T Consensus 72 ~~~~~~~~~a~~~gi~vv~~d~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (316)
T d1tjya_ 72 DGLCPALKRAMQRGVKILTWDSDTKP---ECR-SYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWV 147 (316)
T ss_dssp STTHHHHHHHHHTTCEEEEESSCCCG---GGC-SEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCEECCCCCCC---CCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHH
T ss_conf 01245566542146541111453322---233-21111100179999999999876303454301102466533102445
Q ss_pred HHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8999999863--985998410175433128999999984335
Q T0528 173 AAFKEALAKT--GATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 173 ~~~~~~~~~~--g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
..+....... +.+++....-......-......+....++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 189 (316)
T d1tjya_ 148 KEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPD 189 (316)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 677888876145420011101114567889999988614898
No 16
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.34 E-value=0.025 Score=29.52 Aligned_cols=189 Identities=10% Similarity=-0.008 Sum_probs=103.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89998246677056789999999999999985579769858999997278898999999999986488512114775133
Q T0528 20 KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAA 99 (388)
Q Consensus 20 kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~ 99 (388)
.||+++|.... ..+ ..+..|++-++++ . |+ ++++.++..+++.-.+..+.|+.. ++++++=...+..
T Consensus 4 ~Igvi~p~~~~-~~~-~~~~~~i~~~~~~---~-----gy--~~~i~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~ 70 (255)
T d1byka_ 4 VVAIIVTRLDS-LSE-NLAVQTMLPAFYE---Q-----GY--DPIMMESQFSPQLVAEHLGVLKRR-NIDGVVLFGFTGI 70 (255)
T ss_dssp EEEEEESCTTC-HHH-HHHHHHHHHHHHH---H-----TC--EEEEEECTTCHHHHHHHHHHHHTT-TCCEEEEECCTTC
T ss_pred EEEEEECCCCC-HHH-HHHHHHHHHHHHH---C-----CC--EEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf 89998627787-468-9999999999997---3-----99--799983688989999999999707-9858999851787
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHCCCEEEEEECC---CHHHHHHHHHH
Q ss_conf 7788899986497786426776101577765348973476578889999999-7189389998548---74322347899
Q T0528 100 ALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAI-GKQGVTIATLAQD---YAFGRDGVAAF 175 (388)
Q Consensus 100 ~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d---~~~g~~~~~~~ 175 (388)
. .......++|++...... ...+ ....+....+...+.++ .++.++++++... ...++.-...|
T Consensus 71 ~---~~~~~~~~~p~V~i~~~~------~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~~R~~g~ 138 (255)
T d1byka_ 71 T---EEMLAHWQSSLVLLARDA------KGFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAY 138 (255)
T ss_dssp C---TTTSGGGSSSEEEESSCC------SSCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHH
T ss_pred C---HHHHHHHCCCEEEEEECC------CCCC---EEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 5---799997179738985057------8887---676564789999999998732466068862731004678877889
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 999986398599841017543312899999998433576458999605207899999997153
Q T0528 176 KEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDP 238 (388)
Q Consensus 176 ~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
++.+++.+.+.... +. ..++..-.+.+.+.....+..+ ++..-..+.-.+..+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~ai-~~~~D~~A~g~~~al~~~g~ 196 (255)
T d1byka_ 139 LAFCKAHKLHPVAA--LP--GLAMKQGYENVAKVITPETTAL-LCATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHTTCCCEEE--CC--CSCHHHHHHHSGGGCCTTCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEE--EC--CCCHHHHHHHHHHHHHHHHHEE-EEHHHHHHHHHHHHHHHHCC
T ss_conf 99999718960110--23--8988889999999850011112-00334666689999986086
No 17
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.95 E-value=0.04 Score=28.35 Aligned_cols=189 Identities=9% Similarity=-0.054 Sum_probs=101.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 58999824667705678999999999999998557976985899999727889899999999998648851211477513
Q T0528 19 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSA 98 (388)
Q Consensus 19 IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~S~ 98 (388)
=.||+++|-.- ..+-..+.+|++-.+++ +| + .+++.++..+++.-.+..+.|... ++++++=...+.
T Consensus 3 k~Igvi~p~~~--~~~~~~~~~~i~~~~~~---~G-----y--~~~~~~s~~d~~~~~~~i~~l~~~-~vdgiIi~~~~~ 69 (255)
T d1byka_ 3 KVVAIIVTRLD--SLSENLAVQTMLPAFYE---QG-----Y--DPIMMESQFSPQLVAEHLGVLKRR-NIDGVVLFGFTG 69 (255)
T ss_dssp CEEEEEESCTT--CHHHHHHHHHHHHHHHH---HT-----C--EEEEEECTTCHHHHHHHHHHHHTT-TCCEEEEECCTT
T ss_pred CEEEEEECCCC--CHHHHHHHHHHHHHHHH---CC-----C--EEEEEECCCCHHHHHHHHHHHHHC-CCCCEEECCCCC
T ss_conf 88999969988--98999999999999998---59-----9--999994899989999999999832-655201002442
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HCCCEEEEEECCC---HHHHHHHHH
Q ss_conf 377888999864977864267761015777653489734765788899999997-1893899985487---432234789
Q T0528 99 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIG-KQGVTIATLAQDY---AFGRDGVAA 174 (388)
Q Consensus 99 ~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~---~~g~~~~~~ 174 (388)
.. ..+....+.|++...... ...+ ....+..........++. ++.++++++.... ...+.-...
T Consensus 70 ~~---~~~~~~~~~p~v~i~~~~------~~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g 137 (255)
T d1byka_ 70 IT---EEMLAHWQSSLVLLARDA------KGFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEA 137 (255)
T ss_dssp CC---TTTSGGGSSSEEEESSCC------SSCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHH
T ss_pred HH---HHHHHHCCCCEEEECCCC------CCCC---EEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 39---999997699999816678------9998---89967479999999999985125432357774455077777667
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 999998639859984101754331289999999843357645899960520789999999715
Q T0528 175 FKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMD 237 (388)
Q Consensus 175 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
|++++++.|.+...... ..+.......+.+.....+..+ +......+.-.+..+...+
T Consensus 138 ~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~l~~~~~ai-i~~~d~~A~g~~~~l~~~g 195 (255)
T d1byka_ 138 YLAFCKAHKLHPVAALP----GLAMKQGYENVAKVITPETTAL-LCATDTLALGASKYLQEQR 195 (255)
T ss_dssp HHHHHHHTTCCCEEECC----CSCHHHHHHHSGGGCCTTCCEE-EESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCCC----CCCHHHHHHHHHHHHCCCCCEE-ECCCHHHHHHHHHHHHHHC
T ss_conf 99999973998620137----7877888899999707765443-0344365756999999848
No 18
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=89.42 E-value=0.48 Score=21.86 Aligned_cols=90 Identities=16% Similarity=-0.003 Sum_probs=53.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 83589998246677056789999999999999985579769858999997278898999999999986488512114775
Q T0528 17 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 96 (388)
Q Consensus 17 ~~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~~~ 96 (388)
.+|+||++.-.+.-..++ .++..+.+.|--. .+.+|++.+.|+..-.... ....|-.-+++.+--|...
T Consensus 2 k~v~IaiVGKY~~l~DaY-~Si~eAL~hA~~~--------~~~~v~i~wi~s~~l~~~~--~~~~L~~~dGIlvPGGFG~ 70 (250)
T d1vcoa1 2 RTVKIAIAGKYVKMPDAY-LSLLEALRHAGIK--------NRARVEVKWVDAESLEAAD--LEEAFRDVSGILVPGGFGV 70 (250)
T ss_dssp EEEEEEEEESCC---CTT-HHHHHHHHHHHHH--------TTEEEEEEEEEGGGC--CC--HHHHTTTCSCEEECCCCSS
T ss_pred CEEEEEEEECCCCCCHHH-HHHHHHHHHHHHH--------CCCEEEEEEECCHHCCHHH--HHHHHHCCCEEEECCCCCC
T ss_conf 668999996877983289-9899999985876--------3982789997403225355--8988724882895688776
Q ss_pred --CHHHHHHHHHHHHCCCEEEEC
Q ss_conf --133778889998649778642
Q T0528 97 --SAAALADLPVAEENKKILIVE 117 (388)
Q Consensus 97 --S~~~~~~~~~~~~~~vp~i~~ 117 (388)
..-.+.++.++.++++|++..
T Consensus 71 rG~eGki~ai~yARen~iPfLGI 93 (250)
T d1vcoa1 71 RGIEGKVRAAQYARERKIPYLGI 93 (250)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 63578999999998736169999
No 19
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=86.16 E-value=0.8 Score=20.51 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=55.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC--C
Q ss_conf 35899982466770567899999999999999855797698589999972788989999999999864885121147--7
Q T0528 18 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT--S 95 (388)
Q Consensus 18 ~IkIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv~~D~~~~~~~a~~~~~~li~~~~v~~i~G~--~ 95 (388)
+|+||++.-.+.-..+| .++..+.+.|-... +.+|++.+.|+..-.. .....|-.-|++.+--|. -
T Consensus 3 ev~Ia~vGKY~~l~DaY-~Sv~eaL~ha~~~~--------~~~v~i~wi~s~~~e~---~~~~~L~~~dGIlvPGGFG~R 70 (258)
T d1s1ma1 3 EVTIGMVGKYIELPDAY-KSVIEALKHGGLKN--------RVSVNIKLIDSQDVET---RGVEILKGLDAILVPGGFGYR 70 (258)
T ss_dssp EEEEEEEESSCSSGGGG-HHHHHHHHHHHHHH--------TEEEEEEEEEHHHHHH---HCTTTTTTCSEEEECCCCSST
T ss_pred EEEEEEEECCCCCCHHH-HHHHHHHHHHHHHC--------CCEEEEEEECCCCCCC---CCCCCCCCCCCEEEECCCCCC
T ss_conf 36999996767985259-85999999757860--------9728999974001555---563211234628851356767
Q ss_pred CCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 51337788899986497786426
Q T0528 96 SSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 96 ~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
+..-.+.+..++.+.++|++.-.
T Consensus 71 G~eGki~ai~yARen~iPfLGIC 93 (258)
T d1s1ma1 71 GVEGMITTARFARENNIPYLGIC 93 (258)
T ss_dssp THHHHHHHHHHHHHTTCCEEEET
T ss_pred CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78899999999997486178888
No 20
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=55.44 E-value=3.8 Score=16.45 Aligned_cols=33 Identities=18% Similarity=-0.014 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 851211477513377888999864977864267
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
-+.+|.||.+|+=...+..++++.++++|+.+.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl~~iStGd 36 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 36 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 889977999889899999999996990898889
No 21
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=49.44 E-value=6.1 Score=15.23 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=31.4
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 8648851211477513377888999864977864267
Q T0528 83 YQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 83 i~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
+....+.+++||.+|+=...+..+++..+.++|+.+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~ 41 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD 41 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCH
T ss_conf 4678289998999998799999999986984683347
No 22
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=45.90 E-value=6.9 Score=14.90 Aligned_cols=48 Identities=4% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 999999864885121147751337788899986497786426776101
Q T0528 77 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQI 124 (388)
Q Consensus 77 ~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~ 124 (388)
+.++.+-..++..+++|+..+.........+++.++|+++.......+
T Consensus 11 ~~a~~i~~AkrPvii~G~g~~~~~~e~~~~~~~~~ipv~~T~~~~~~~ 58 (158)
T d1ytla1 11 PVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRF 58 (158)
T ss_dssp HHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEETTHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 999999967998999895767769999999998693999613544453
No 23
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} SCOP: d1kdoa_ d2cmka_ d1q3ta_
Probab=43.76 E-value=7.5 Score=14.70 Aligned_cols=33 Identities=18% Similarity=-0.014 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 851211477513377888999864977864267
Q T0528 87 GADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 87 ~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
.+.+|.||.+|+-...+.-+++..+.++|+.+-
T Consensus 4 piI~I~G~pGsGKgTqak~La~k~g~~~iStGd 36 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 36 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEECHHH
T ss_conf 078741788887788999999981997145778
No 24
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=43.68 E-value=7.5 Score=14.69 Aligned_cols=32 Identities=16% Similarity=-0.000 Sum_probs=26.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 51211477513377888999864977864267
Q T0528 88 ADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
+.+|-||.+|+-...+..++++.++++|+++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd 36 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 36 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 99978999879899999999996994787799
No 25
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=43.24 E-value=7.6 Score=14.65 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 78898999999999986---488512114775133778889998649778642677610157776534897347657888
Q T0528 68 DQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDA 144 (388)
Q Consensus 68 ~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
--++|.......+.+.+ +.++++|+|+..++...+ ..++...++|++..--. ..+........-+..........
T Consensus 34 ll~~P~~l~~i~~~la~~~~~~~iD~Vvgi~~~Gi~lA-~~lA~~L~~p~v~~Rk~-~k~~~~~~~~~~~~~~~~~~~~~ 111 (202)
T d1o57a2 34 ILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLA-YAAASYLNVPVVIVRKD-NKVTEGSTVSINYVSGSSNRIQT 111 (202)
T ss_dssp TTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHH-HHHHHHHTCCEEEEBCC------CCEEEEEEECSSCCSEEE
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH-HHHHHHHHCCEEEEECC-CCCCCCCEEEEEEECCCCCCCCC
T ss_conf 10799999999999999844679979998346763455-79999863160543025-77799976999752377776432
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 999999971893899985487432234789999998639859984101
Q T0528 145 ISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 145 ~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
..+..-.-..+++|.+|-+=-..|.++ ....+.+++.|.+++....+
T Consensus 112 l~i~~~~l~~g~rVlIVDDvi~TG~T~-~a~~~~l~~~Ga~vv~~~vl 158 (202)
T d1o57a2 112 MSLAKRSMKTGSNVLIIDDFMKAGGTI-NGMINLLDEFNANVAGIGVL 158 (202)
T ss_dssp EEEEGGGSCTTCEEEEEEEEESSSHHH-HHHHHHTGGGTCEEEEEEEE
T ss_pred CHHCCCCCCCCCEEEEEHHHHHHHHHH-HHHHHHHHHCCCEEEEEEEE
T ss_conf 010266210496599974776516899-99999999879989999999
No 26
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=40.83 E-value=7.6 Score=14.66 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 885121147751337788899986497786426
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
..+.+|+||.+|+=...+..+++..++++++.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g 38 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEECHH
T ss_conf 948999899999889999999999799267212
No 27
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}
Probab=38.29 E-value=9.1 Score=14.18 Aligned_cols=14 Identities=50% Similarity=0.890 Sum_probs=6.2
Q ss_pred EEEEEECCCCCHHHH
Q ss_conf 899982466770567
Q T0528 20 KIALIYGKTGPLEAY 34 (388)
Q Consensus 20 kIG~~~p~sG~~a~~ 34 (388)
+||+++- ||.++.+
T Consensus 3 ~iGlIlG-TG~NacY 16 (262)
T d1ig8a2 3 KMGVIFG-TGVNGAY 16 (262)
T ss_dssp EEEEEES-SSEEEEE
T ss_pred EEEEEEE-CCEEEEE
T ss_conf 8999983-7577899
No 28
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=37.79 E-value=9.3 Score=14.14 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 889899999999998648851211477513377888999864977864267761015777653489
Q T0528 69 QSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIF 134 (388)
Q Consensus 69 ~~~~~~a~~~~~~li~~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~ 134 (388)
..|+..-.+.+..|.+.++..+++|.........+..+++..++|++.....-..+ ...++++.
T Consensus 14 ~pd~~~i~~~~~~L~~A~rPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~--~~~hp~~~ 77 (183)
T d2ez9a1 14 EPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIV--ADRYPAYL 77 (183)
T ss_dssp BCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSS--CTTCTTBC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC--CCCCCCCC
T ss_conf 98999999999999837993999837806354999987640433798621455443--23476433
No 29
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=36.04 E-value=9.9 Score=13.97 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 99998648851-21147751337788899986497786426776101
Q T0528 79 LAEAYQDDGAD-IAIGTSSSAAALADLPVAEENKKILIVEPAVADQI 124 (388)
Q Consensus 79 ~~~li~~~~v~-~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~ 124 (388)
..+++.+.+++ +|+||- ......+...+.+.++|.+.|+.....+
T Consensus 58 i~~~a~~~~idlvviGPE-~pL~~Gl~D~l~~~gI~vfGP~k~aA~l 103 (105)
T d1gsoa2 58 LLDFAQNEKIDLTIVGPE-APLVKGVVDTFRAAGLKIFGPTAGAAQL 103 (105)
T ss_dssp HHHHHHHTTCSEEEECSH-HHHHTTHHHHHHHTTCCEESCCTTTTHH
T ss_pred HHHHHHHHCCCEEEECCH-HHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 998999829688997708-8887699999998879799928799830
No 30
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.64 E-value=10 Score=13.83 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 885121147751337788899986497786426
Q T0528 86 DGADIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 86 ~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
-.+.+++||.+|+-...+..+++..++++|+.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~is~g 40 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 40 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCEEEEHH
T ss_conf 728999899999989999999998599088535
No 31
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}
Probab=27.71 E-value=14 Score=13.12 Aligned_cols=83 Identities=10% Similarity=-0.101 Sum_probs=43.5
Q ss_pred HHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 99999864885121147751--3377888999864977864267761015777653489734765788899999997189
Q T0528 78 ALAEAYQDDGADIAIGTSSS--AAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQG 155 (388)
Q Consensus 78 ~~~~li~~~~v~~i~G~~~S--~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
+++.|-..+++.+++|.... .....+..+++..++|++....+-..+ + +.+++++........ ......++ ++.
T Consensus 22 a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i-~-e~~p~~~G~~~G~~~-~~~~~~~i-~~a 97 (161)
T d1ovma1 22 AENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIF-D-ERQAGFYGTYSGSAS-TGAVKEAI-EGA 97 (161)
T ss_dssp HHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSS-C-TTSTTCCCCCCGGGS-CHHHHHHH-HTS
T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC-C-CCCCCCCCCCCCCCC-CHHHHHHH-HCC
T ss_conf 9999982899689989593755069999999996496599847767766-0-214102356677757-59999998-538
Q ss_pred CEEEEEECC
Q ss_conf 389998548
Q T0528 156 VTIATLAQD 164 (388)
Q Consensus 156 ~~v~~i~~d 164 (388)
.-+..|...
T Consensus 98 DliL~iG~~ 106 (161)
T d1ovma1 98 DTVLCVGTR 106 (161)
T ss_dssp SEEEEESCC
T ss_pred CEEEEECCC
T ss_conf 989997776
No 32
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=27.63 E-value=14 Score=13.11 Aligned_cols=123 Identities=13% Similarity=0.017 Sum_probs=61.0
Q ss_pred ECCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 278898999999999986---48851211477513377888999864977864267761015777653489734765788
Q T0528 67 DDQSKPDLSKAALAEAYQ---DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQD 143 (388)
Q Consensus 67 D~~~~~~~a~~~~~~li~---~~~v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
+...||..-......|.+ ..+++.|+|+..++... +..++...++|++..--. .................+....
T Consensus 27 ~~~~dP~ll~~i~~~la~~~~~~~~d~Ivg~~~~Gi~l-A~~iA~~L~~p~v~~Rk~-~k~~~~~~~~~~~~~~~~~~~~ 104 (191)
T d1y0ba1 27 NHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAP-AVMTGLKLGVPVVFARKH-KSLTLTDNLLTASVYSFTKQTE 104 (191)
T ss_dssp SSEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHH-HHHHHHHHTCCEEEEBSS-CCSSCCSSEEEEEEEETTTTEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH-HHHHHHHCCCEEEEEEEE-CCCCCCCCEEEEEEEEEECCCE
T ss_conf 76569999999999999985067997999547505788-999986325038999960-6767877526888986404531
Q ss_pred HH-HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 89-99999971893899985487432234789999998639859984101
Q T0528 144 AI-SNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYV 192 (388)
Q Consensus 144 ~~-~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~ 192 (388)
.. ..-...-..+++|.++-+--..|.+ .....+.+++.|.+++....+
T Consensus 105 ~~~~~~~~~l~~g~rVlIVDDvi~TG~T-~~~~~~ll~~~Ga~vv~v~vl 153 (191)
T d1y0ba1 105 SQIAVSGTHLSDQDHVLIIDDFLANGQA-AHGLVSIVKQAGASIAGIGIV 153 (191)
T ss_dssp EEEEEEGGGCCTTCEEEEEEEEESSCHH-HHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEHHHHCCCCEEEEHHHHHHHCHH-HHHHHHHHHHCCCEEEEEEEE
T ss_conf 3444211231479658886886651767-999999999889989999999
No 33
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.86 E-value=14 Score=13.03 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=26.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 51211477513377888999864977864267
Q T0528 88 ADIAIGTSSSAAALADLPVAEENKKILIVEPA 119 (388)
Q Consensus 88 v~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~a 119 (388)
+.+|+||.+|+-...+..+++..+.++|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~ 34 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYGYTHLSAGE 34 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 99997999999899999999986992676889
No 34
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=25.38 E-value=15 Score=12.87 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=25.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 121147751337788899986497786426
Q T0528 89 DIAIGTSSSAAALADLPVAEENKKILIVEP 118 (388)
Q Consensus 89 ~~i~G~~~S~~~~~~~~~~~~~~vp~i~~~ 118 (388)
.+++||.+|+-...+..+++..+.++|+.+
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g~~~is~g 38 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFELKHLSSG 38 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBCCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 999889999879999999999798687189
No 35
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.38 E-value=16 Score=12.75 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCE--EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE----EEE--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 835--899982466770567899999999999999855797698589999----972--788989999999999864885
Q T0528 17 DDL--KIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVI----TKD--DQSKPDLSKAALAEAYQDDGA 88 (388)
Q Consensus 17 ~~I--kIG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg~i~Gr~i~lv----~~D--~~~~~~~a~~~~~~li~~~~v 88 (388)
+|+ +||++.|-++. . . ..++.+++.+.+.|- +|.+- ..+ -.++.+.=++...++..++.+
T Consensus 10 ~P~Gd~I~iiAPS~~~-~---~---~~l~~~~~~L~~~G~-----~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~dp~i 77 (167)
T d1zl0a2 10 QPIDGRVALIAPASAI-A---T---DVLEATLRQLEVHGV-----DYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDI 77 (167)
T ss_dssp CCCCSEEEEECCSBCC-C---H---HHHHHHHHHHHHTTC-----CEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTE
T ss_pred CCCCCEEEEEECCCCC-C---H---HHHHHHHHHHHHCCC-----EEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9997999999579868-9---9---999999999997898-----89878650234676569999999999875317678
Q ss_pred CCCC---CCCCCHHHHH
Q ss_conf 1211---4775133778
Q T0528 89 DIAI---GTSSSAAALA 102 (388)
Q Consensus 89 ~~i~---G~~~S~~~~~ 102 (388)
.+|+ |.+++...+.
T Consensus 78 ~aI~~~rGGyGa~rlL~ 94 (167)
T d1zl0a2 78 TAVWCLRGGYGCGQLLP 94 (167)
T ss_dssp EEEEESCCSSCGGGGTT
T ss_pred CEEEECCCHHHHHHHHH
T ss_conf 88998866789999874
No 36
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=24.06 E-value=16 Score=12.71 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=45.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC--CEEEEEEECCHHHH
Q ss_conf 938999854874322347899999986398599841017543312899999998433576--45899960520789
Q T0528 155 GVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP--GKKIIWVIWAGGGD 228 (388)
Q Consensus 155 ~~~v~~i~~d~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~~--~~~~~~~~~~~~~~ 228 (388)
.++|+ |..| ..|..+...+.+.++..|.+|+....+.....||.....++.....+.. ..++++....+...
T Consensus 14 mkkI~-igsD-haG~~lK~~l~~~L~~~g~~V~D~G~~~~~~~DYpd~a~~va~~v~~~~~~~GIliCGtG~G~~I 87 (159)
T d1nn4a_ 14 MKKIA-FGCD-HVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISI 87 (159)
T ss_dssp CSEEE-EEEC-TTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHH
T ss_pred CEEEE-EEEC-CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf 30799-9848-70699999999999987998997899866666851788899999873663058882587548999
No 37
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=21.38 E-value=18 Score=12.39 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 743223478999999863985998410175433128999999984335
Q T0528 165 YAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKD 212 (388)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d 212 (388)
+..|..+...+.+.+++.|.+|+....+.....||.....++......
T Consensus 10 Dh~G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~ 57 (145)
T d1o1xa_ 10 DHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS 57 (145)
T ss_dssp CSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 870799999999999977999997799977777834899999999734
No 38
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=20.84 E-value=19 Score=12.32 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999864885121147
Q T0528 73 DLSKAALAEAYQDDGADIAIGT 94 (388)
Q Consensus 73 ~~a~~~~~~li~~~~v~~i~G~ 94 (388)
...+....++..+.+++.|+|-
T Consensus 78 ~~~v~~~~~~~~~~~~D~IIav 99 (398)
T d1vlja_ 78 LSKVHEAVEVAKKEKVEAVLGV 99 (398)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8999987641145667668844
Done!