Query T0529 Nucleoprotein structure of lassa fever virus, unknown, 569 residues
Match_columns 569
No_of_seqs 39 out of 41
Neff 2.4
Searched_HMMs 22458
Date Fri May 21 18:06:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0529.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0529.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 92.7 0.22 9.6E-06 29.0 5.8 144 381-536 3-157 (189)
2 2is3_A Ribonuclease T; RNAse, 88.1 1.4 6.2E-05 23.1 7.7 147 386-541 20-194 (215)
3 2p1j_A POLIII, DNA polymerase 88.0 1.4 6.2E-05 23.0 8.4 140 386-541 15-169 (186)
4 2f96_A Ribonuclease T; RNAse, 86.4 1.7 7.5E-05 22.4 6.5 144 386-540 32-205 (224)
5 2ioc_B Three prime repair exon 82.4 2 9.1E-05 21.8 5.2 145 383-542 12-209 (242)
6 1y97_A Three prime repair exon 82.1 2.5 0.00011 21.1 6.3 141 385-540 12-202 (238)
7 1zbh_A 3'-5' exonuclease ERI1; 79.1 3.2 0.00014 20.4 7.4 143 387-541 82-256 (299)
8 1zbu_A ERI-1 homolog, 3'-5' ex 70.7 4 0.00018 19.7 4.0 133 397-541 151-306 (349)
9 1w0h_A 3'-5' exonuclease ERI1; 67.8 5.7 0.00025 18.5 8.0 141 388-541 15-188 (204)
10 3fjv_A Uncharacterized novel p 53.1 9.8 0.00044 16.8 3.4 67 370-439 98-175 (194)
11 2bbh_A Divalent cation transpo 51.5 5.7 0.00025 18.6 1.9 20 376-395 53-72 (269)
12 1u7l_A Vacuolar ATP synthase s 51.5 8 0.00036 17.5 2.7 24 88-113 52-75 (392)
13 2hn1_A CORA, magnesium and cob 48.2 7.2 0.00032 17.8 2.0 18 378-395 60-77 (266)
14 1lkj_A Calmodulin, CAM; yeast 41.6 15 0.00065 15.5 3.1 29 363-391 2-30 (146)
15 1p22_A F-BOX/WD-repeat protein 40.6 9.9 0.00044 16.8 1.8 21 153-173 147-167 (435)
16 3dl3_A Tellurite resistance pr 39.0 16 0.00069 15.4 2.6 36 385-431 79-114 (119)
17 3f9s_A Putative polyketide cyc 38.3 8.2 0.00037 17.4 1.1 25 157-181 120-144 (146)
18 3kgk_A Arsenical resistance op 38.0 15 0.00068 15.4 2.4 47 95-147 22-71 (110)
19 2pq8_A Probable histone acetyl 37.4 17 0.00075 15.1 2.7 77 98-209 160-236 (278)
20 2iub_A CORA, divalent cation t 36.4 9.3 0.00041 17.0 1.1 21 375-395 61-81 (363)
21 1vs1_A 3-deoxy-7-phosphoheptul 35.6 18 0.0008 14.9 2.6 50 227-281 206-269 (276)
22 3dtp_E RLC, myosin regulatory 35.4 18 0.00081 14.9 2.6 32 361-392 47-78 (196)
23 1x4t_A Hypothetical protein LO 35.0 17 0.00076 15.1 2.2 19 64-82 51-69 (92)
24 2hes_X YDR267CP; beta-propelle 34.9 11 0.00051 16.3 1.3 16 154-169 29-44 (330)
25 3emx_A Thioredoxin; structural 34.4 13 0.00056 16.0 1.5 28 250-280 4-31 (135)
26 1skn_P DNA-binding domain of S 34.1 11 0.00051 16.4 1.2 60 55-114 12-73 (92)
27 2bjr_A MFP2B; motility, nemato 32.6 7.9 0.00035 17.5 0.2 31 194-226 72-109 (368)
28 2bjq_A MFP2A; motility, nemato 32.0 8.2 0.00037 17.4 0.2 48 196-244 84-135 (345)
29 3fwb_A Cell division control p 31.9 20 0.00091 14.5 3.2 33 360-392 12-44 (161)
30 2if6_A Hypothetical protein YI 31.7 12 0.00055 16.1 1.1 151 401-560 1-170 (186)
31 3ktb_A Arsenical resistance op 30.7 14 0.00062 15.7 1.2 33 92-132 22-54 (106)
32 1vyh_C Platelet-activating fac 30.4 13 0.00059 15.9 1.1 17 155-171 126-142 (410)
33 1oqv_A Toxin-coregulated pilus 29.7 5 0.00022 19.0 -1.2 51 211-261 48-107 (192)
34 1h99_A Transcription antitermi 28.7 23 0.001 14.1 2.2 53 50-111 159-222 (224)
35 3fm0_A Protein CIAO1; WDR39,SG 27.3 17 0.00074 15.2 1.1 19 154-172 33-51 (345)
36 2gex_A SNOL; alpha+beta barrel 27.1 24 0.0011 13.9 2.1 26 157-182 113-138 (152)
37 1gxr_A ESG1, transducin-like e 27.0 17 0.00075 15.1 1.1 27 144-170 57-83 (337)
38 2gey_A ACLR protein; alpha+bet 26.5 22 0.00098 14.2 1.6 25 157-181 111-135 (158)
39 3acp_A WD40 protein, WD repeat 26.4 22 0.00097 14.3 1.6 16 154-169 111-126 (417)
40 2ip1_A Tryptophanyl-tRNA synth 25.6 16 0.00072 15.3 0.8 23 158-180 24-58 (432)
41 3k0z_A Putative polyketide cyc 25.5 26 0.0012 13.7 2.1 26 156-181 133-158 (159)
42 2oaj_A Protein SNI1; WD40 repe 25.1 20 0.0009 14.5 1.2 18 155-172 229-246 (902)
43 2ou2_A Histone acetyltransfera 24.6 27 0.0012 13.6 2.1 83 98-209 158-240 (280)
44 1k8k_C P40, ARP2/3 complex 41 24.6 17 0.00074 15.1 0.7 15 155-169 26-40 (372)
45 1ryk_A Protein YJBJ; alpha pro 24.5 27 0.0012 13.6 1.9 29 90-118 20-48 (69)
46 3k26_A Polycomb protein EED; W 24.1 22 0.001 14.2 1.3 16 155-170 91-106 (366)
47 1nr0_A Actin interacting prote 23.1 23 0.001 14.1 1.2 14 156-169 167-180 (611)
48 1l4s_A Protein YFIA; ribosome 22.6 18 0.00079 15.0 0.5 18 364-381 10-27 (112)
49 3fs2_A 2-dehydro-3-deoxyphosph 22.4 30 0.0013 13.3 4.4 22 95-116 53-74 (298)
50 2gui_A DNA polymerase III epsi 22.1 30 0.0013 13.3 5.6 150 380-540 6-177 (194)
51 3frx_A Guanine nucleotide-bind 21.1 22 0.00096 14.3 0.7 17 154-170 35-51 (319)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=92.74 E-value=0.22 Score=28.98 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=87.7
Q ss_pred CCCCCEEEEEC----CCCCC--CEEEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCC--CHHHHHHHH
Q ss_conf 89986578604----78989--64788870799867888507551002121264100111655402475--368999974
Q T0529 381 DPNAKTWMDIE----GRPED--PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVIDA 452 (569)
Q Consensus 381 dp~~tTWiDIE----G~p~D--PVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKysHGillkDl~~aqP--GL~S~vI~~ 452 (569)
.|..-.|||.| +|-.| -.++|+.--.....++-|-.|... +-+.+.--|||.-.++.++.| .....+...
T Consensus 3 ~~~~~V~iD~EttGl~~~~~~~i~~iaiv~~~g~~i~~~~v~~~~~--i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~ 80 (189)
T 1wlj_A 3 GSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGE--ITDYRTRVSGVTPQHMVGATPFAVARLEILQL 80 (189)
T ss_dssp ---CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSC--EEECCHHHHCCCHHHHTTCEEHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCC--CCHHHEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9996999987817888898767999999985198999985526654--57204567255201346888389888887651
Q ss_pred CCCCCEEEECCHH-HHHHHHHHCCCCCEEEEEEEECH--HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH
Q ss_conf 5866489813828-99999984499622678643064--78877788889988778864285043312468888876037
Q T0529 453 LPRNMVITCQGSD-DIRKLLESQGRKDIKLIDIALSK--TDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHC 529 (569)
Q Consensus 453 LP~~MVlT~QGsD-DIrkLld~hGRkDiKliDV~ls~--eqsR~FEd~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHC 529 (569)
+ .+-++.|.... |++-|-...-|. .+.|...-. -..+.|.+.-|-.-..||...-|+-+. +...+|.
T Consensus 81 ~-~~~~lv~hn~~fD~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~i~-------~~~~aH~ 150 (189)
T 1wlj_A 81 L-KGKLVVGHDLKHDFQALKEDMSGY--TIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQ-------NSLLGHS 150 (189)
T ss_dssp H-TTSEEEESSHHHHHHHTTCCCTTC--EEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCS-------CCTTCCC
T ss_pred C-CCCEECCCCCCHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC-------CCCCCCC
T ss_conf 0-243001124212899998864046--32353041799989874256676588999998197667-------9998818
Q ss_pred HHHHHHH
Q ss_conf 8899999
Q T0529 530 ALMDCIM 536 (569)
Q Consensus 530 ALlDCiM 536 (569)
||-||++
T Consensus 151 Al~DA~a 157 (189)
T 1wlj_A 151 SVEDARA 157 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 2999999
No 2
>2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12}
Probab=88.07 E-value=1.4 Score=23.06 Aligned_cols=147 Identities=17% Similarity=0.111 Sum_probs=88.4
Q ss_pred EEEEECCC-----CCCCEEEEEEECC--------CCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHH----
Q ss_conf 57860478-----9896478887079--------986788850755100212126410011165540247536899----
Q T0529 386 TWMDIEGR-----PEDPVEIALYQPS--------SGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSA---- 448 (569)
Q Consensus 386 TWiDIEG~-----p~DPVElAiyQP~--------sg~YIHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~---- 448 (569)
.=+|+|-. -+..+|+|..--. .+.+.++|..|.........+...|||...++....|.....
T Consensus 20 Vv~D~ETTGl~~~~d~Iieigai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~ 99 (215)
T 2is3_A 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEI 99 (215)
T ss_dssp EEEEEEESSSCTTTSCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99997589999998840899999998677672665445776415777888887899884754389982698345768999
Q ss_pred -------HHHHCCCCCEEEECCHH-HH---HHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf -------99745866489813828-99---99998449962267864306478877788889988778864285043312
Q T0529 449 -------VIDALPRNMVITCQGSD-DI---RKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKK 517 (569)
Q Consensus 449 -------vI~~LP~~MVlT~QGsD-DI---rkLld~hGRkDiKliDV~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi~kK 517 (569)
+........++.+..+. |. +..+...+-.-.............+.+...=|-+...||..+. +-.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~~l~~~~~-i~~--- 175 (215)
T 2is3_A 100 FKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAG-MDF--- 175 (215)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTHHHHHHHHHHHHHHHTCTTCCEEEEEEEEHHHHHHHHHSCCSHHHHHHHTT-CCC---
T ss_pred HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCC-CCC---
T ss_conf 9999988763046640344001787899999999980898775301458999999744037353999999859-999---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 468888876037889999986664
Q T0529 518 KRGGKEEITPHCALMDCIMFDAAV 541 (569)
Q Consensus 518 KKg~~~~~tpHCALlDCiMF~a~~ 541 (569)
+...+|=||-||.|--.+.
T Consensus 176 -----~~~~aH~Al~Da~~ta~l~ 194 (215)
T 2is3_A 176 -----DSTQAHSALYDTERTAVLF 194 (215)
T ss_dssp -----CTTTTTCHHHHHHHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHHHHH
T ss_conf -----9898788399999999999
No 3
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=88.04 E-value=1.4 Score=23.05 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred EEEEECCC-----CCCCEEEEEEECCCCCE---EEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCC--HHHHHHHHCCC
Q ss_conf 57860478-----98964788870799867---8885075510021212641001116554024753--68999974586
Q T0529 386 TWMDIEGR-----PEDPVEIALYQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG--LTSAVIDALPR 455 (569)
Q Consensus 386 TWiDIEG~-----p~DPVElAiyQP~sg~Y---IHcyR~P~D~K~FK~~SKysHGillkDl~~aqPG--L~S~vI~~LP~ 455 (569)
.++|+|-. .+.++|+|..--++|.- .|+|-+|.. ..-..+.--|||.-.++..+.+= ....+...+..
T Consensus 15 iviD~ETTGl~~~~~~Iieigav~~~~~~i~~~~~~~v~P~~--~~~~~~~~i~gi~~~~~~~~~~~~~v~~~~~~~~~~ 92 (186)
T 2p1j_A 15 VVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED 92 (186)
T ss_dssp EEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCC--CCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 999997089988988899999999999928667899964766--689999987087643311321299999999974699
Q ss_pred CCEEEECCHHHHHHH---HHHCCCCC--EEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 648981382899999---98449962--2678643064788777888899887788642850433124688888760378
Q T0529 456 NMVITCQGSDDIRKL---LESQGRKD--IKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCA 530 (569)
Q Consensus 456 ~MVlT~QGsDDIrkL---ld~hGRkD--iKliDV~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCA 530 (569)
..++..-++-|++-| |.-++..+ .+.+|.. .-+|.+-..-+-+...||... |+ +...+|.|
T Consensus 93 ~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~id~~---~~~~~~~~~~~~~L~~l~~~~-gi----------~~~~~H~A 158 (186)
T 2p1j_A 93 SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTL---ALAKSLLKLRSYSLDSVVEKL-GL----------GPFRHHRA 158 (186)
T ss_dssp CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHH---HHHHHHTCCSCCSHHHHHHHT-TC----------CSTTCCHH
T ss_pred CEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHH---HHHHHHCCCCCCCHHHHHHHC-CC----------CCCCCCCH
T ss_conf 98999568878999999999845986667620309---999986577898899999985-99----------99989788
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999986664
Q T0529 531 LMDCIMFDAAV 541 (569)
Q Consensus 531 LlDCiMF~a~~ 541 (569)
|-||.+--.+.
T Consensus 159 l~Da~~t~~l~ 169 (186)
T 2p1j_A 159 LDDARVTAQVF 169 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 4
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PSI, MCSG, protein structure initiative; 2.09A {Pseudomonas aeruginosa PAO1} SCOP: c.55.3.5
Probab=86.41 E-value=1.7 Score=22.41 Aligned_cols=144 Identities=16% Similarity=0.083 Sum_probs=84.3
Q ss_pred EEEEECCCCCC-----CEEEEEEE--CC------CCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCC-----------
Q ss_conf 57860478989-----64788870--79------98678885075510021212641001116554024-----------
Q T0529 386 TWMDIEGRPED-----PVEIALYQ--PS------SGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFAT----------- 441 (569)
Q Consensus 386 TWiDIEG~p~D-----PVElAiyQ--P~------sg~YIHcyR~P~D~K~FK~~SKysHGillkDl~~a----------- 441 (569)
.++|+|-.--| .+|||..- ++ .+...++|-.|.........+..-||+....+...
T Consensus 32 VV~D~ETTGL~~~~d~IIeIgaV~v~~~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (224)
T 2f96_A 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI 111 (224)
T ss_dssp EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHEEEECCCHHHHHHCCCCHHHHHHHH
T ss_conf 59998789989888737999999998614784630156798626887888980324550445178775263147899999
Q ss_pred CCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHC----CCC--CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 753689999745866489813828999999844----996--22678643064788777888899887788642850433
Q T0529 442 QPGLTSAVIDALPRNMVITCQGSDDIRKLLESQ----GRK--DIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVE 515 (569)
Q Consensus 442 qPGL~S~vI~~LP~~MVlT~QGsDDIrkLld~h----GRk--DiKliDV~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi~ 515 (569)
-..+..++....+....+.+...+-....+.-. |.. .....++......+|..- -|-+...+|.. -|+-+.
T Consensus 112 ~~~~~~~i~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~l~~~-~gi~~~ 188 (224)
T 2f96_A 112 FRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQA-AGMEFD 188 (224)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH--SCCSHHHHHHH-TTCCCC
T ss_pred HHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH-CCCCCC
T ss_conf 998999987504565132121278899999999998499887652013788999998766--85469999998-399999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1246888887603788999998666
Q T0529 516 KKKRGGKEEITPHCALMDCIMFDAA 540 (569)
Q Consensus 516 kKKKg~~~~~tpHCALlDCiMF~a~ 540 (569)
..++|.||-||.+---.
T Consensus 189 --------~~~aH~Al~Da~~ta~l 205 (224)
T 2f96_A 189 --------NREAHSARYDTEKTAEL 205 (224)
T ss_dssp --------TTSCCCHHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHH
T ss_conf --------89776879999999999
No 5
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=82.44 E-value=2 Score=21.82 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCEEEEECCC-----CCCCEEEEEEECCCC-------------------CE---EEEEECCCCHHHHHCCCCCCCCCHH
Q ss_conf 98657860478-----989647888707998-------------------67---8885075510021212641001116
Q T0529 383 NAKTWMDIEGR-----PEDPVEIALYQPSSG-------------------CY---IHFFREPTDLKQFKQDAKYSHGIDV 435 (569)
Q Consensus 383 ~~tTWiDIEG~-----p~DPVElAiyQP~sg-------------------~Y---IHcyR~P~D~K~FK~~SKysHGill 435 (569)
+.-.|+|+|-. ....+|+|......+ .. .+++=+|. +.....+.--|||--
T Consensus 12 ~~~v~~D~ETTGL~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lv~P~--~~i~~~a~~ihGIt~ 89 (242)
T 2ioc_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPG--KACSPGASEITGLSK 89 (242)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCS--SCCCHHHHHHHCCCH
T ss_pred CEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCEEEEECCC--CCCCHHHHHHCCCCH
T ss_conf 629999986589798998759999999967853455211001113566661100000356889--979988998729999
Q ss_pred HHHHCCC-CC-------HHHHHHHHCCCCCEEEECC--HHHH---HHHHHHCCC----CCEEEEEEEECHHHHHHHHHHH
Q ss_conf 5540247-53-------6899997458664898138--2899---999984499----6226786430647887778888
Q T0529 436 TDLFATQ-PG-------LTSAVIDALPRNMVITCQG--SDDI---RKLLESQGR----KDIKLIDIALSKTDSRKYENAV 498 (569)
Q Consensus 436 kDl~~aq-PG-------L~S~vI~~LP~~MVlT~QG--sDDI---rkLld~hGR----kDiKliDV~ls~eqsR~FEd~V 498 (569)
.++..+. |. ++-..+..++..-++-+.. +-|+ ++-|.-+|. .+...|| |-.-+|.++...
T Consensus 90 ~~l~~~~~~~~~e~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iD---tl~l~~~~~~~~ 166 (242)
T 2ioc_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVD---SIAALKALEQAS 166 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEE---HHHHHHHHHHTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEE---HHHHHHHHHHCC
T ss_conf 99974115507899999999998642588679984757768999999999849988877886876---999999962334
Q ss_pred HH---------HHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99---------887788642850433124688888760378899999866643
Q T0529 499 WD---------QYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDAAVS 542 (569)
Q Consensus 499 Wd---------~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a~~~ 542 (569)
+. +-+.||....| .+...+|-||=||.|--.++.
T Consensus 167 ~~~~~~~~~~~~L~~l~~~~~g----------~~~~~aH~Al~Da~at~~l~~ 209 (242)
T 2ioc_B 167 SPSGNGSRKSYSLGSIYTRLYW----------QAPTDSHTAEGDVLTLLSICQ 209 (242)
T ss_dssp -------CCCCCHHHHHHHHHS----------SCCSSTTSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHCC----------CCCCCCCCHHHHHHHHHHHHH
T ss_conf 5555688788889999999819----------999989898999999999999
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=82.15 E-value=2.5 Score=21.14 Aligned_cols=141 Identities=17% Similarity=0.176 Sum_probs=79.4
Q ss_pred CEEEEEC--CC---CCCCEEEEEEECC-------------------CCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHC
Q ss_conf 6578604--78---9896478887079-------------------9867888507551002121264100111655402
Q T0529 385 KTWMDIE--GR---PEDPVEIALYQPS-------------------SGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFA 440 (569)
Q Consensus 385 tTWiDIE--G~---p~DPVElAiyQP~-------------------sg~YIHcyR~P~D~K~FK~~SKysHGillkDl~~ 440 (569)
=.|+|+| |. .+.++|+|..--. -..-.++|-+|+. .+...+.--|||--.++..
T Consensus 12 ~vvlD~ETTGl~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~~tgIt~~~v~~ 89 (238)
T 1y97_A 12 FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp EEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCHHHHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECEEECCCCCCC--CCCHHHHHHCCCCHHHHHH
T ss_conf 99999973898989997599999999788622232111134566611010210028899--8998898751778999974
Q ss_pred CCCC--------HHHHHHHHCCCCCEEEECC--HHH---HHHHHHHCCCC---CEEEEEEEECHHHHHHHHHH----HH-
Q ss_conf 4753--------6899997458664898138--289---99999844996---22678643064788777888----89-
Q T0529 441 TQPG--------LTSAVIDALPRNMVITCQG--SDD---IRKLLESQGRK---DIKLIDIALSKTDSRKYENA----VW- 499 (569)
Q Consensus 441 aqPG--------L~S~vI~~LP~~MVlT~QG--sDD---IrkLld~hGRk---DiKliDV~ls~eqsR~FEd~----VW- 499 (569)
+.+. ..-.....+...-++-+.. .-| +++.|..+|.. +...+|. -.-+|.+... .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~n~~~fD~~~L~~~~~r~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~ 166 (238)
T 1y97_A 90 CRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDT---LPALRGLDRAHSHGTRA 166 (238)
T ss_dssp TTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEH---HHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEE---EHHHHHHHHHCCCCCCC
T ss_conf 788626999999999997530478458985124656999999999819999988769885---26788886431222346
Q ss_pred -----HHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----98877886428504331246888887603788999998666
Q T0529 500 -----DQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDAA 540 (569)
Q Consensus 500 -----d~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a~ 540 (569)
-+-+.||..+.|+ +...+|=|+-||.+--.+
T Consensus 167 ~~~~~~~L~~l~~~~~~~----------~~~~aH~Al~Da~~ta~l 202 (238)
T 1y97_A 167 RGRQGYSLGSLFHRYFRA----------EPSAAHSAEGDVHTLLLI 202 (238)
T ss_dssp ----CCSHHHHHHHHHSS----------CCC---CHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCC----------CCCCCCCHHHHHHHHHHH
T ss_conf 766783789999996499----------989897989999999999
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=79.09 E-value=3.2 Score=20.44 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=73.6
Q ss_pred EEEEC------CCCC---CCEEEE--EEECCCCCEE---EEEECCCCHHHHHCCCCCCCCCHHHHHHCCCC--CHHHHHH
Q ss_conf 78604------7898---964788--8707998678---88507551002121264100111655402475--3689999
Q T0529 387 WMDIE------GRPE---DPVEIA--LYQPSSGCYI---HFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVI 450 (569)
Q Consensus 387 WiDIE------G~p~---DPVElA--iyQP~sg~YI---HcyR~P~D~K~FK~~SKysHGillkDl~~aqP--GL~S~vI 450 (569)
-||+| |++. .-+||+ ++-..++.-+ |.|-+|......-..+.--|||.-.++.+|-+ -.+..+.
T Consensus 82 viD~EtTc~~g~~~~~~~EIIEigaV~vd~~~~~i~d~F~~~VrP~~~~~ls~~~~~LTGIt~e~V~~Ap~f~eVl~~f~ 161 (299)
T 1zbh_A 82 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVI 161 (299)
T ss_dssp EECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCHHHHHHHHHH
T ss_conf 99985378889988999827999889997257636413201222676876798898760778899425300888999999
Q ss_pred HHC-------CCCCEEEECCHHHHHHHHHH----CCCC----CEEEEEEEECHHHHHHHHH-HHHHHHHHHHHHCCCCEE
Q ss_conf 745-------86648981382899999984----4996----2267864306478877788-889988778864285043
Q T0529 451 DAL-------PRNMVITCQGSDDIRKLLES----QGRK----DIKLIDIALSKTDSRKYEN-AVWDQYKDLCHMHTGVVV 514 (569)
Q Consensus 451 ~~L-------P~~MVlT~QGsDDIrkLld~----hGRk----DiKliDV~ls~eqsR~FEd-~VWd~f~~LC~~H~GiVi 514 (569)
.-+ ..+-.+-+-|.-|+++.+.. +|.. .-..+|++ +.-++.|.. .-|-+...+|... ||-.
T Consensus 162 ~~l~~~~l~~~~~~~~v~~g~~D~~~fL~~~~~~~~i~~p~~~~~~idl~--~~~~~~~~~~~~~~~L~~l~~~l-gI~~ 238 (299)
T 1zbh_A 162 DLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIR--KSYGNFYKVPRSQTKLTIMLEKL-GMDY 238 (299)
T ss_dssp HHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHH--HHHHHHHTCCGGGCSHHHHHHHT-TCCC
T ss_pred HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEHH--HHHHHHHCCCCCCCCHHHHHHHC-CCCC
T ss_conf 99851831136613673350766899999999972889865466367689--99999846876787999999986-9988
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 312468888876037889999986664
Q T0529 515 EKKKRGGKEEITPHCALMDCIMFDAAV 541 (569)
Q Consensus 515 ~kKKKg~~~~~tpHCALlDCiMF~a~~ 541 (569)
+-.+|+||=||.+--.++
T Consensus 239 ---------~G~~H~ALdDA~~tA~I~ 256 (299)
T 1zbh_A 239 ---------DGRPNCGLDDSKNIARIA 256 (299)
T ss_dssp ---------CSCTTCHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHH
T ss_conf ---------998718599999999999
No 8
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=70.66 E-value=4 Score=19.68 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=71.6
Q ss_pred CEEEE--EEECCCCCEE---EEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCC------HHHHHHHH---CCCCCEEEEC
Q ss_conf 64788--8707998678---885075510021212641001116554024753------68999974---5866489813
Q T0529 397 PVEIA--LYQPSSGCYI---HFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG------LTSAVIDA---LPRNMVITCQ 462 (569)
Q Consensus 397 PVElA--iyQP~sg~YI---HcyR~P~D~K~FK~~SKysHGillkDl~~aqPG------L~S~vI~~---LP~~MVlT~Q 462 (569)
-+||+ ++-..++..+ |.|-+|......-.-..--|||--.++.+|-|= +...+-.. -..+..|-+-
T Consensus 151 IIEigaV~vd~~~~~i~d~F~~lVkP~~~~~Ls~~~~~LTGITqe~V~~Ap~f~eVl~~f~~~l~~~~l~~~~~~~fvt~ 230 (349)
T 1zbu_A 151 IIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTD 230 (349)
T ss_dssp EEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEES
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCEEEEEC
T ss_conf 58998899985898697888888845637878988998738799999747558999999999963786630574257505
Q ss_pred CHHHHHHHHH----HCCCC----CEEEEEEEECHHHHHHHHH-HHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf 8289999998----44996----2267864306478877788-8899887788642850433124688888760378899
Q T0529 463 GSDDIRKLLE----SQGRK----DIKLIDIALSKTDSRKYEN-AVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMD 533 (569)
Q Consensus 463 GsDDIrkLld----~hGRk----DiKliDV~ls~eqsR~FEd-~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlD 533 (569)
|.-|+++.+. .+|-+ -.+.||++. .-++.|.. .-+-+-+.+|.. -||-.. -.+|+||-|
T Consensus 231 g~~D~~~fL~~~~~~~~i~~p~~~~~~iDl~~--~~~~~~~~~~~~~~L~~l~e~-~GI~~e---------G~~HrALdD 298 (349)
T 1zbu_A 231 GSWDMSKFLNIQCQLSRLKYPPFAKKWINIRK--SYGNFYKVPRSQTKLTIMLEK-LGMDYD---------GRPHCGLDD 298 (349)
T ss_dssp SSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHH--HHHHHHTCCGGGGSHHHHHHH-TTCCCC---------SCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHH--HHHHHHCCCCCCCCHHHHHHH-CCCCCC---------CCCCCCHHH
T ss_conf 28779999999999829998644664576999--999974245578899999997-799988---------988080999
Q ss_pred HHHHHHHH
Q ss_conf 99986664
Q T0529 534 CIMFDAAV 541 (569)
Q Consensus 534 CiMF~a~~ 541 (569)
|.+--.++
T Consensus 299 A~~tA~Il 306 (349)
T 1zbu_A 299 SKNIARIA 306 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=67.82 E-value=5.7 Score=18.55 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=76.5
Q ss_pred EEEC------CCCCC---CEEEEE--EECCCCCE---EEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHH------
Q ss_conf 8604------78989---647888--70799867---8885075510021212641001116554024753689------
Q T0529 388 MDIE------GRPED---PVEIAL--YQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTS------ 447 (569)
Q Consensus 388 iDIE------G~p~D---PVElAi--yQP~sg~Y---IHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S------ 447 (569)
+|+| |++.+ -+|||. +-+.++.. .++|-+|.+.......+..-|||...++..+ |..-.
T Consensus 15 ~D~EtT~~~~~~~~~~~~IIeigav~~d~~~~~~~~~f~~~i~P~~~~~i~~~~~~v~git~~~l~~~-~~~~~v~~~~~ 93 (204)
T 1w0h_A 15 IDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQVLKKVI 93 (204)
T ss_dssp CCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCC-HHHHHHHHHHH
T ss_conf 99608899899999998289999999987995698999865035767778989998737447765411-02899999999
Q ss_pred -HHHHH---CCCCCEEEECCHHHHHHH----HHHCCCC----CEEEEEEEECHHHHHHHHHHHHH-HHHHHHHHCCCCEE
Q ss_conf -99974---586648981382899999----9844996----22678643064788777888899-88778864285043
Q T0529 448 -AVIDA---LPRNMVITCQGSDDIRKL----LESQGRK----DIKLIDIALSKTDSRKYENAVWD-QYKDLCHMHTGVVV 514 (569)
Q Consensus 448 -~vI~~---LP~~MVlT~QGsDDIrkL----ld~hGRk----DiKliDV~ls~eqsR~FEd~VWd-~f~~LC~~H~GiVi 514 (569)
.+-.. -..+..+-+.+.-|+++. +..++.. ....+|+. ...+..|...-+. +-..+|. |-|+-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~p~~~~~~~d~~--~~~~~~~~~~~~~~~L~~~~~-~~gi~~ 170 (204)
T 1w0h_A 94 DWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIR--KSYGNFYKVPRSQTKLTIMLE-KLGMDY 170 (204)
T ss_dssp HHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHH--HHHHHHHTCCGGGCSHHHHHH-HTTCCC
T ss_pred HHHHCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHH--HHHHHHHCCCCCCCCHHHHHH-HCCCCC
T ss_conf 99720522203301110434554889999999861775322464067667--766665326768989999999-869999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 312468888876037889999986664
Q T0529 515 EKKKRGGKEEITPHCALMDCIMFDAAV 541 (569)
Q Consensus 515 ~kKKKg~~~~~tpHCALlDCiMF~a~~ 541 (569)
+-.+|-||-||.+--.++
T Consensus 171 ---------~~~aH~AL~Da~~ta~ll 188 (204)
T 1w0h_A 171 ---------DGRPHCGLDDSKNIARIA 188 (204)
T ss_dssp ---------CSCTTCHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHH
T ss_conf ---------998828799999999999
No 10
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function, structural genomics; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=53.15 E-value=9.8 Score=16.82 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHHHHHHC-CCCCCEEEEECCCCCCCEEEEEEECC----------CCCEEEEEECCCCHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999998613-89986578604789896478887079----------98678885075510021212641001116554
Q T0529 370 LMTLKDAMLQL-DPNAKTWMDIEGRPEDPVEIALYQPS----------SGCYIHFFREPTDLKQFKQDAKYSHGIDVTDL 438 (569)
Q Consensus 370 e~~ik~~m~~L-dp~~tTWiDIEG~p~DPVElAiyQP~----------sg~YIHcyR~P~D~K~FK~~SKysHGillkDl 438 (569)
+...++...+| .-.+++|+-|.| +.+| .|++..+ +=+|+||-=-+..++.||+++.-.-||+....
T Consensus 98 ~~~rk~~L~~l~GiE~~v~l~i~~--~~ki-~ai~deDldR~~~dKtSsVHfLrF~lt~~~i~~~k~g~~v~igidH~~Y 174 (194)
T 3fjv_A 98 ETQRRAALARLVGIEDRVFLRVDD--EAPV-YAIADEDLERDTAEKTSAVHFLRFELGDAMKAKLKAGAPLSIGCDHPHY 174 (194)
T ss_dssp HHHHHHHHHHTTTGGGSEEEEETT--SCCE-ECEECTTSCHHHHHSCCSEEEEEEECCHHHHHHHHTTCCEEEEECCTTS
T ss_pred HHHHHHHHHHHCCCCCEEEEEECC--CCEE-EEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHCCCCEEEEECCHHC
T ss_conf 889999999847955508999889--7158-8876756566777642068999985899999986089978999462225
Q ss_pred H
Q ss_conf 0
Q T0529 439 F 439 (569)
Q Consensus 439 ~ 439 (569)
-
T Consensus 175 ~ 175 (194)
T 3fjv_A 175 P 175 (194)
T ss_dssp C
T ss_pred C
T ss_conf 6
No 11
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural genomics consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=51.48 E-value=5.7 Score=18.56 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.8
Q ss_pred HHHHCCCCCCEEEEECCCCC
Q ss_conf 98613899865786047898
Q T0529 376 AMLQLDPNAKTWMDIEGRPE 395 (569)
Q Consensus 376 ~m~~Ldp~~tTWiDIEG~p~ 395 (569)
...-++++..+||||+|+.+
T Consensus 53 ~~~~~~~~~~~Wi~i~g~~d 72 (269)
T 2bbh_A 53 VLPFRDSSTPTWINITGIHR 72 (269)
T ss_dssp TGGGGGCSSCEEEEEECTTC
T ss_pred HHHHCCCCCCEEEEECCCCC
T ss_conf 98526888867998079997
No 12
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=51.46 E-value=8 Score=17.46 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 68725777678999998899999997
Q T0529 88 ILRVGTLTSDDLLILAADLEKLKSKV 113 (569)
Q Consensus 88 ~lkvG~LskdeLm~LasDLeKLk~Kv 113 (569)
-||||+| |.||.||-||.||-.-|
T Consensus 52 dfKvGTL--DsLv~lsDeL~KlD~~~ 75 (392)
T 1u7l_A 52 EFKIGSL--DTLIVESEELSKVDNQI 75 (392)
T ss_dssp CCBCSCG--GGHHHHHHHHHHHHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHHHHHHH
T ss_conf 7772359--99998788888789999
No 13
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protein, divalent cations; 2.90A {Archaeoglobus fulgidus}
Probab=48.16 E-value=7.2 Score=17.81 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=14.8
Q ss_pred HHCCCCCCEEEEECCCCC
Q ss_conf 613899865786047898
Q T0529 378 LQLDPNAKTWMDIEGRPE 395 (569)
Q Consensus 378 ~~Ldp~~tTWiDIEG~p~ 395 (569)
...+++..+||||+|+.+
T Consensus 60 ~~~~~~~~~Wi~v~g~~d 77 (266)
T 2hn1_A 60 SALALNKKLWIDVVGVHD 77 (266)
T ss_dssp TTCCTTSEEEEEECCCCC
T ss_pred HCCCCCCEEEEEECCCCC
T ss_conf 216888508998069999
No 14
>1lkj_A Calmodulin, CAM; yeast calmodulin, EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5
Probab=41.58 E-value=15 Score=15.54 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 67888899999999861389986578604
Q T0529 363 AGLTYSQLMTLKDAMLQLDPNAKTWMDIE 391 (569)
Q Consensus 363 ~~Lt~~qe~~ik~~m~~Ldp~~tTWiDIE 391 (569)
++||++|...++++-..+|++.+-+|+++
T Consensus 2 ~~lt~~ei~~l~~~F~~~D~d~~G~i~~~ 30 (146)
T 1lkj_A 2 SNLTEEQIAEFKEAFALFDKDNNGSISSS 30 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSSSSEEEHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEHH
T ss_conf 99799999999999999778998969199
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=40.63 E-value=9.9 Score=16.80 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=15.1
Q ss_pred CCCCCCCEEEEEECCCHHHHH
Q ss_conf 777888758997357646776
Q T0529 153 ARAGRDGVVRVWDVKNAELLN 173 (569)
Q Consensus 153 ~~~~~~GvVrvWDvkd~sll~ 173 (569)
..|..+|.|||||+..-.++-
T Consensus 147 ~sgs~Dg~I~vwd~~t~~~~~ 167 (435)
T 1p22_A 147 VSGLRDNTIKIWDKNTLECKR 167 (435)
T ss_dssp EEEESSSCEEEEESSSCCEEE
T ss_pred EEEECCCEEEEEECCCCCEEE
T ss_conf 999489909999899992999
No 16
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=39.01 E-value=16 Score=15.35 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 65786047898964788870799867888507551002121264100
Q T0529 385 KTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSH 431 (569)
Q Consensus 385 tTWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKysH 431 (569)
.-|-.|| |.|+++ .||.||.+|.|.-.=|-++|--|
T Consensus 79 q~wHrVe--~sdD~~---------f~leFy~~~~dyf~kky~~~~~~ 114 (119)
T 3dl3_A 79 QYWHRIE--LSDDAQ---------FNINFWSDQDKSGKKMFNTKLEH 114 (119)
T ss_dssp TCEEEEE--ECTTCE---------EEEEEEECC--------------
T ss_pred CCEEEEE--ECCCEE---------EEEEEEECHHHHHHHHHCCCCCC
T ss_conf 7228998--789949---------99999978268514655350000
No 17
>3f9s_A Putative polyketide cyclase; AFE_2539, structural genomics, joint center for structural genomics, JCSG; 1.76A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=38.34 E-value=8.2 Score=17.38 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCHHHHHHHCCCCHH
Q ss_conf 8875899735764677642066046
Q T0529 157 RDGVVRVWDVKNAELLNNQFGTMPS 181 (569)
Q Consensus 157 ~~GvVrvWDvkd~sll~NQFGsmPa 181 (569)
.+-||+.|+.-|..-+..|.|.+||
T Consensus 120 dgkIv~~~~~~D~~~~~~QLg~~~~ 144 (146)
T 3f9s_A 120 GNRLTGHWQITDRLGVYQQLRQAAA 144 (146)
T ss_dssp ETEEEEEEEEECHHHHHHHHHHHC-
T ss_pred CCEEEEEEEEECHHHHHHHCCCCCC
T ss_conf 9989999997259999998288889
No 18
>3kgk_A Arsenical resistance operon trans-acting repressor ARSD; alpha+beta, chaperone, DNA-binding, plasmid, transcription, transcription regulation; 1.40A {Escherichia coli}
Probab=37.96 E-value=15 Score=15.44 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 767899999889999999752036---77885032166477899999999984367
Q T0529 95 TSDDLLILAADLEKLKSKVIRTER---PLSAGVYMGNLSSQQLDQRRALLNMIGMS 147 (569)
Q Consensus 95 skdeLm~LasDLeKLk~Kv~rtEr---~~~~gvY~GNLt~~QL~~Rs~iL~~vG~~ 147 (569)
-..||+.+|+|++.||++=...|| ...|..+.-|= .-.++|+.-|+.
T Consensus 22 vd~~L~~~a~~~~~lk~~gv~v~RyNL~~~P~~F~~N~------~V~~~L~~~G~e 71 (110)
T 3kgk_A 22 VDQALVDFSTDVQWLKQSGVQIERFNLAQQPMSFVQNE------KVKAFIEASGAE 71 (110)
T ss_dssp --CHHHHHHHHHHHHHHHTCCEEEEETTTCTTHHHHSH------HHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCH------HHHHHHHHCCCC
T ss_conf 69899999999999997696599852546979887289------999999965954
No 19
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A*
Probab=37.39 E-value=17 Score=15.09 Aligned_cols=77 Identities=29% Similarity=0.396 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCC
Q ss_conf 89999988999999975203677885032166477899999999984367655677778887589973576467764206
Q T0529 98 DLLILAADLEKLKSKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDVKNAELLNNQFG 177 (569)
Q Consensus 98 eLm~LasDLeKLk~Kv~rtEr~~~~gvY~GNLt~~QL~~Rs~iL~~vG~~~~~~~~~~~~~GvVrvWDvkd~sll~NQFG 177 (569)
=|+++|=-|-|...+++--|||.+. .|.++-.--= +..|++.+-- .+
T Consensus 160 lLI~fSYeLSr~E~~~G~PEkPLSd---lG~~sY~~YW-~~~i~~~l~~------~~----------------------- 206 (278)
T 2pq8_A 160 FLIAFSYELSKLESTVGSPEKPLSD---LGKLSYRSYW-SWVLLENLRD------FR----------------------- 206 (278)
T ss_dssp HHHHHHHHHHHHTTCCBEECSSCCH---HHHHHHHHHH-HHHHHHHTC--------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCH---HHHHHHHHHH-HHHHHHHHHH------CC-----------------------
T ss_conf 2386663565416888999999888---8999999999-9999999985------69-----------------------
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEE
Q ss_conf 60467888864405653678999875212003
Q T0529 178 TMPSLTLACLTKQGQVDLNDAVQALTDLGLIY 209 (569)
Q Consensus 178 smPalTiaCMt~Qgge~lndVVQ~Lt~LGLlY 209 (569)
..+||.=++...+-...||+.+|..||++.
T Consensus 207 --~~isi~~is~~T~i~~~Dii~tL~~l~~l~ 236 (278)
T 2pq8_A 207 --GTLSIKDLSQMTSITQNDIISTLQSLNMVK 236 (278)
T ss_dssp ------CHHHHHHHCBCHHHHHHHHHHTTCEE
T ss_pred --CCCCHHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf --984099999861987764999998779789
No 20
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=36.37 E-value=9.3 Score=16.99 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=15.1
Q ss_pred HHHHHCCCCCCEEEEECCCCC
Q ss_conf 998613899865786047898
Q T0529 375 DAMLQLDPNAKTWMDIEGRPE 395 (569)
Q Consensus 375 ~~m~~Ldp~~tTWiDIEG~p~ 395 (569)
+.-...++...+||||+|+.+
T Consensus 61 ~~~~~~~~~~~~Widv~g~~d 81 (363)
T 2iub_A 61 SVLPFRDSSTPTWINITGIHR 81 (363)
T ss_dssp GTGGGGGCSSCEEEEEECTTC
T ss_pred HHHHHCCCCCCEEEECCCCCC
T ss_conf 987426888877998269899
No 21
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=35.60 E-value=18 Score=14.89 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=24.0
Q ss_pred CEEECCCCCCCCEEEEEECHHHH-HHHHHCCE-------------EECCCCCEEEEEECHHHHHHHHHH
Q ss_conf 71110146543001000021366-66541400-------------110666035676352128899999
Q T0529 227 PILNMIDTKKSSLNISGYNFSLG-AAVKAGAC-------------MLDGGNMLETIKVSPQTMDGILKS 281 (569)
Q Consensus 227 p~L~iIt~~~S~iNISGYNlSLs-AAVKAGA~-------------liDGGNMLETIkv~p~~f~~iiK~ 281 (569)
+.+.++....++..-..|-.+|+ |||-+||. +-|+-++| +|+.|..+++.
T Consensus 206 ~~~~~~~~~~~~~g~~~~i~~la~AAva~Ga~Gl~IEkH~tpdka~sD~~~sl-----~~~el~~lv~~ 269 (276)
T 1vs1_A 206 THLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQL-----TPGEFARLMGE 269 (276)
T ss_dssp BSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCGGGCB-----CHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHCC-----CHHHHHHHHHH
T ss_conf 67641156667787343289999999980999899982888233799723218-----99999999999
No 22
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=35.37 E-value=18 Score=14.87 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 55678888999999998613899865786047
Q T0529 361 FTAGLTYSQLMTLKDAMLQLDPNAKTWMDIEG 392 (569)
Q Consensus 361 ~~~~Lt~~qe~~ik~~m~~Ldp~~tTWiDIEG 392 (569)
..+.+++.|...++++-..+|.+..-.|+++-
T Consensus 47 ~~~~~t~~qi~elke~F~~fD~d~dG~I~~~E 78 (196)
T 3dtp_E 47 VFAMFTQHQVQEFKEAFQLIDQDKDGFISKND 78 (196)
T ss_dssp SSCSSCTTTHHHHHHHHHHHCCSCSSBCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 23459999999999999997899989282999
No 23
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=35.02 E-value=17 Score=15.07 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999888899877775320
Q T0529 64 LKRLRDLNQAVNNLVELKS 82 (569)
Q Consensus 64 L~~LRDlNkeVd~Lm~mkS 82 (569)
-.++||||-|++.||--|.
T Consensus 51 E~~IRdLNDeINkL~rEK~ 69 (92)
T 1x4t_A 51 EFRIRDLNDEINKLLREKG 69 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=34.86 E-value=11 Score=16.34 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.3
Q ss_pred CCCCCCEEEEEECCCH
Q ss_conf 7788875899735764
Q T0529 154 RAGRDGVVRVWDVKNA 169 (569)
Q Consensus 154 ~~~~~GvVrvWDvkd~ 169 (569)
.+..+|.|||||++..
T Consensus 29 tgs~D~~i~iwd~~~~ 44 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYD 44 (330)
T ss_dssp EEESSSCEEEEECSSS
T ss_pred EEECCCEEEEEECCCC
T ss_conf 9958992999986599
No 25
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=34.38 E-value=13 Score=16.04 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=22.8
Q ss_pred HHHHHCCEEECCCCCEEEEEECHHHHHHHHH
Q ss_conf 6654140011066603567635212889999
Q T0529 250 AAVKAGACMLDGGNMLETIKVSPQTMDGILK 280 (569)
Q Consensus 250 AAVKAGA~liDGGNMLETIkv~p~~f~~iiK 280 (569)
+.+|.|..+++.|++ |.+++.+|..+++
T Consensus 4 ~~~~e~~~~~~dg~l---i~it~~~f~~~l~ 31 (135)
T 3emx_A 4 SYVKEGLAVLEDGRL---IYITPEEFRQLLQ 31 (135)
T ss_dssp GGSCCEEEEEETTEE---EECCHHHHHHHHT
T ss_pred HHHHCCCCCCCCCCE---EECCHHHHHHHHC
T ss_conf 576535644248966---9878899999848
No 26
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=34.11 E-value=11 Score=16.35 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=45.1
Q ss_pred HHCCCCHHHHHHHHHHHH--HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 540578657899988889--987777532024552687257776789999988999999975
Q T0529 55 RKERRDDNDLKRLRDLNQ--AVNNLVELKSTQQKSILRVGTLTSDDLLILAADLEKLKSKVI 114 (569)
Q Consensus 55 Rk~KR~D~DL~~LRDlNk--eVd~Lm~mkS~Qk~~~lkvG~LskdeLm~LasDLeKLk~Kv~ 114 (569)
|++.|.-.|....+.++- .++-|++|.-..-|.+|+-.+|+++|++.+-.-=-++|+++-
T Consensus 12 r~~~R~srDe~~a~~~~lPfs~eeIv~l~v~efN~lL~~~~Ls~~q~~~iK~~RR~~kNr~~ 73 (92)
T 1skn_P 12 RKRGRQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVA 73 (92)
T ss_dssp ---CCCCHHHHHHHHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHCCHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 12010200488898748999899997587999999997669999999999999998871899
No 27
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=32.62 E-value=7.9 Score=17.50 Aligned_cols=31 Identities=32% Similarity=0.670 Sum_probs=14.1
Q ss_pred CHHHHHHHHH------HCCEEEE-ECCCCHHHHHHHHHCC
Q ss_conf 3678999875------2120034-4178867999885218
Q T0529 194 DLNDAVQALT------DLGLIYT-AKYPNTSDLDRLTQSH 226 (569)
Q Consensus 194 ~lndVVQ~Lt------~LGLlYT-~KyPNl~DLekLt~~H 226 (569)
+|+.-+|-|+ ++|.-|- .||-. -.|+.-+.|
T Consensus 72 DlgGqIQiL~y~gd~~~~GFwYeWi~yK~--r~e~~~~~~ 109 (368)
T 2bjr_A 72 DLGGQIQVLQYKGNHLSLGYWYNWIKYSD--RFDKMDKGA 109 (368)
T ss_dssp HHCSEEEEEECCSCHHHHSCEEEEEEGGG--HHHHHHTTC
T ss_pred CCCCEEEEEEECCCCCCCCEEEEEEEHHH--HHHHHHCCC
T ss_conf 66987899995377676620256112566--776300310
No 28
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=32.04 E-value=8.2 Score=17.39 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCEEEE-ECCCCHHHHHHHHHC---CCEEECCCCCCCCEEEEEE
Q ss_conf 789998752120034-417886799988521---8711101465430010000
Q T0529 196 NDAVQALTDLGLIYT-AKYPNTSDLDRLTQS---HPILNMIDTKKSSLNISGY 244 (569)
Q Consensus 196 ndVVQ~Lt~LGLlYT-~KyPNl~DLekLt~~---Hp~L~iIt~~~S~iNISGY 244 (569)
++-.|+..+||.-|- .||-.-...+. -+- -.+.-|+-.++-.-+.-||
T Consensus 84 ~~~~~~~~s~GFwYeWi~yK~r~~~~~-~qlvRCg~S~pv~w~~~~g~~lLGy 135 (345)
T 2bjq_A 84 QDPTEQFKKTGFWYEWRPYKDRVNDQL-LQLVRCGQSTPVIMKTKDGKDLLGY 135 (345)
T ss_dssp SSHHHHHHHHSCEEEEEEGGGGGCTTT-EEECCBTTEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEHHHHCCCCC-EEEEECCCCCCEEEECCCCCCEEEE
T ss_conf 876544455631477254233215100-1367605754246662678854778
No 29
>3fwb_A Cell division control protein 31; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Probab=31.93 E-value=20 Score=14.48 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 655678888999999998613899865786047
Q T0529 360 GFTAGLTYSQLMTLKDAMLQLDPNAKTWMDIEG 392 (569)
Q Consensus 360 ~~~~~Lt~~qe~~ik~~m~~Ldp~~tTWiDIEG 392 (569)
.....||+.|...++++-..+|.+..-+|+++-
T Consensus 12 ~~~~~lt~~~~~elke~F~~~D~d~dG~Is~~e 44 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHE 44 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEECHHH
T ss_conf 540017999999999999997689997695999
No 30
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, protein structure initiative; 1.80A {Escherichia coli O157} SCOP: d.3.1.21
Probab=31.71 E-value=12 Score=16.10 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=63.9
Q ss_pred EEEECCCCCEEEEEECCCC---HHHHHCCCCCCC-CCHHHH-----HHCCCCCH----HHHHHHHCCCCCEEEEC-----
Q ss_conf 8870799867888507551---002121264100-111655-----40247536----89999745866489813-----
Q T0529 401 ALYQPSSGCYIHFFREPTD---LKQFKQDAKYSH-GIDVTD-----LFATQPGL----TSAVIDALPRNMVITCQ----- 462 (569)
Q Consensus 401 AiyQP~sg~YIHcyR~P~D---~K~FK~~SKysH-GillkD-----l~~aqPGL----~S~vI~~LP~~MVlT~Q----- 462 (569)
++|||++|--|-+. -... .=.+-.+|.||| ||.+++ +..+-++. ++.-+.....+.+.-+.
T Consensus 1 s~~q~~~GDIlf~~-~~~~~s~aI~~~T~S~~sHvgIvv~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~R~~~~~ 79 (186)
T 2if6_A 1 SLWQPQTGDIIFQI-SRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGL 79 (186)
T ss_dssp --CCCCTTCEEEEC-CCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEESSSEEEEEHHHHHHTSGGGCEEEEEETTCC
T ss_pred CCCCCCCCCEEEEE-CCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCEEEECHHHHHCCCCCCEEEEEECCCC
T ss_conf 98889787889995-79856999999738997369999965997057533557436643145430567537999735889
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEEECHHHHHHH-HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 82899999984499622678643064788777-88889988778864285043312468888876037889999986664
Q T0529 463 GSDDIRKLLESQGRKDIKLIDIALSKTDSRKY-ENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDAAV 541 (569)
Q Consensus 463 GsDDIrkLld~hGRkDiKliDV~ls~eqsR~F-Ed~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a~~ 541 (569)
..++..++....-++-=+--|..+..+..|.| -+.||+-|..-. |+-+-+-++-+.....-..+...| |. -.
T Consensus 80 ~~~~~~~~~~~a~~~lG~pYd~~f~~~~~~~yCSelV~~ay~~a~----gi~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 152 (186)
T 2if6_A 80 SVEQQQKLAQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNAL----GMRVGEQQKLKEFDLSNPLVQAKL--KE-RY 152 (186)
T ss_dssp CHHHHHHHHHHHGGGTTCCBCTTCCSSSSSBCHHHHHHHHHHHHH----CCCCSCCEEGGGSCCCSHHHHHHH--HH-HH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC----CCCCCCCEECCCCCCCCCHHHHHH--HH-HH
T ss_conf 999999999999997599778644566543433699999999734----864468454255444582789999--99-81
Q ss_pred CCCCCCCCCCCCCCHHHEE
Q ss_conf 3765753320016323401
Q T0529 542 SGGLNTSVLRAVLPRDMVF 560 (569)
Q Consensus 542 ~G~~~~~~p~~lLP~dllf 560 (569)
.+.+|... .-+-|.||..
T Consensus 153 ~~~ip~~~-~~~~P~dl~~ 170 (186)
T 2if6_A 153 GKNIPLEE-TVVSPQAVFD 170 (186)
T ss_dssp TTCCCTTC-EECCHHHHHT
T ss_pred CCCCCCCC-CCCCHHHHHC
T ss_conf 89888888-7507799821
No 31
>3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
Probab=30.73 E-value=14 Score=15.69 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHH
Q ss_conf 57776789999988999999975203677885032166477
Q T0529 92 GTLTSDDLLILAADLEKLKSKVIRTERPLSAGVYMGNLSSQ 132 (569)
Q Consensus 92 G~LskdeLm~LasDLeKLk~Kv~rtEr~~~~gvY~GNLt~~ 132 (569)
|.=-..||+.+|+|++.||++=...|| =||+++
T Consensus 22 Gp~vd~~L~~~aa~~~~lk~~gv~v~R--------~nL~~~ 54 (106)
T 3ktb_A 22 GTNINPELMRIAVVIESLKKQGIIVTR--------HNLRDE 54 (106)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCCEE--------EETTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEE--------ECCCCC
T ss_conf 888698999999999999967947997--------543359
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=30.43 E-value=13 Score=15.87 Aligned_cols=17 Identities=29% Similarity=0.829 Sum_probs=13.0
Q ss_pred CCCCCEEEEEECCCHHH
Q ss_conf 78887589973576467
Q T0529 155 AGRDGVVRVWDVKNAEL 171 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~sl 171 (569)
++.+|.|+|||+....+
T Consensus 126 ~s~Dg~i~iwd~~~~~~ 142 (410)
T 1vyh_C 126 ASEDATIKVWDYETGDF 142 (410)
T ss_dssp EESSSCEEEEETTTCCC
T ss_pred ECCCCCEEEEECCCCCC
T ss_conf 54888539865478852
No 33
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin, pilus filament, fiber forming protein, adhesin, fimbriae, cell adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2
Probab=29.71 E-value=5 Score=18.97 Aligned_cols=51 Identities=29% Similarity=0.405 Sum_probs=36.3
Q ss_pred ECCC---CHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHH------HHHHHHCCEEECC
Q ss_conf 4178---8679998852187111014654300100002136------6665414001106
Q T0529 211 AKYP---NTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSL------GAAVKAGACMLDG 261 (569)
Q Consensus 211 ~KyP---Nl~DLekLt~~Hp~L~iIt~~~S~iNISGYNlSL------sAAVKAGA~liDG 261 (569)
.+|| .-..+.|||..--.|+-|+.+|--.+|||-++-. +|+-|+=|-.+||
T Consensus 48 G~YPa~~d~~a~~klTsgLV~LGKIS~DEarN~fsG~~m~I~s~~~n~aanKgFAI~VnG 107 (192)
T 1oqv_A 48 GNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDG 107 (192)
T ss_dssp SSCCCCSSHHHHHHHHHHHHHTTSSCHHHHBCTTTSSBCEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCHHCEEEEEECC
T ss_conf 888764364666555666774578678883287768743563135785000505999778
No 34
>1h99_A Transcription antiterminator LICT; transcriptional antiterminator, PTS regulatory domain; 1.55A {Bacillus subtilis} SCOP: a.142.1.1 a.142.1.1 PDB: 1tlv_A*
Probab=28.66 E-value=23 Score=14.10 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH-----------HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998540578657899988889-----------987777532024552687257776789999988999999
Q T0529 50 VQRLMRKERRDDNDLKRLRDLNQ-----------AVNNLVELKSTQQKSILRVGTLTSDDLLILAADLEKLKS 111 (569)
Q Consensus 50 VQR~mRk~KR~D~DL~~LRDlNk-----------eVd~Lm~mkS~Qk~~~lkvG~LskdeLm~LasDLeKLk~ 111 (569)
.|||..+.--.|.|-- |-|--| .|. .---||-|+ +|+.||+|-|+-|.|+.++
T Consensus 159 AQRm~~~T~~E~dD~~-L~~tVKd~Y~rA~~Ct~~i~-~~iqr~Yq~-------~LTsdEim~LtI~IERV~K 222 (224)
T 1h99_A 159 AQRLFNGTHMESEDDF-LLDTVKEKYHRAYECTKKIQ-TYIEREYEH-------KLTSDELLYLTIDIERVVK 222 (224)
T ss_dssp HHHHHHTCCCC--CTH-HHHHHHHHTHHHHHHHHHHH-HHHHHHHCC-------CCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------CCCHHHHHHHHHHHHHHHH
T ss_conf 9998347724577389-99999998899998899999-999999986-------1566564331002977873
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic protein, structural genomics, structural genomics consortiu; 1.70A {Homo sapiens}
Probab=27.26 E-value=17 Score=15.15 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=14.1
Q ss_pred CCCCCCEEEEEECCCHHHH
Q ss_conf 7788875899735764677
Q T0529 154 RAGRDGVVRVWDVKNAELL 172 (569)
Q Consensus 154 ~~~~~GvVrvWDvkd~sll 172 (569)
.++.+|.|||||+...+..
T Consensus 33 sg~~Dg~I~iWd~~~~~~~ 51 (345)
T 3fm0_A 33 SCGGDRRIRIWGTEGDSWI 51 (345)
T ss_dssp EEETTSCEEEEEEETTEEE
T ss_pred EECCCCEEEEEECCCCCEE
T ss_conf 9908993999977899678
No 36
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=27.10 E-value=24 Score=13.91 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCHHHHHHHCCCCHHH
Q ss_conf 88758997357646776420660467
Q T0529 157 RDGVVRVWDVKNAELLNNQFGTMPSL 182 (569)
Q Consensus 157 ~~GvVrvWDvkd~sll~NQFGsmPal 182 (569)
.+-||+.|+.-|..-+..|.|-+|.-
T Consensus 113 ~GkIve~~~~~D~~~~~~QLG~~p~~ 138 (152)
T 2gex_A 113 AGKVVEHWDVFNFSPLFRDLGVVPDG 138 (152)
T ss_dssp TSCEEEEEEEEECHHHHHHSTTCHHH
T ss_pred CCEEEEEEEEECHHHHHHHCCCCCCC
T ss_conf 99999999987499999876899985
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=26.98 E-value=17 Score=15.12 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=16.4
Q ss_pred HCCCCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 436765567777888758997357646
Q T0529 144 IGMSGGNQGARAGRDGVVRVWDVKNAE 170 (569)
Q Consensus 144 vG~~~~~~~~~~~~~GvVrvWDvkd~s 170 (569)
+.|.+..+---.+.+|.||+||+..+.
T Consensus 57 ~~~s~~~~~~~~g~dg~v~~wd~~~~~ 83 (337)
T 1gxr_A 57 VTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp EEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred EEECCCCCEEEEECCCEEEEEECCCCC
T ss_conf 999489989999699989999898999
No 38
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=26.48 E-value=22 Score=14.25 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=21.7
Q ss_pred CCCEEEEEECCCHHHHHHHCCCCHH
Q ss_conf 8875899735764677642066046
Q T0529 157 RDGVVRVWDVKNAELLNNQFGTMPS 181 (569)
Q Consensus 157 ~~GvVrvWDvkd~sll~NQFGsmPa 181 (569)
.+-|++.|+.-|.--+..|+|-+|.
T Consensus 111 dGkI~e~~~~~D~~~~~~QLG~~P~ 135 (158)
T 2gey_A 111 DGKVVEHWDVINMRPLLVRLGKLPD 135 (158)
T ss_dssp TTEEEEEEEEEECHHHHHHTTSSCC
T ss_pred CCEEEEEEEEECHHHHHHHCCCCCC
T ss_conf 9999999996569999987799999
No 39
>3acp_A WD40 protein, WD repeat-containing protein YGL004C; WD40 domain, chaperone; 2.00A {Saccharomyces cerevisiae}
Probab=26.43 E-value=22 Score=14.30 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEECCCH
Q ss_conf 7788875899735764
Q T0529 154 RAGRDGVVRVWDVKNA 169 (569)
Q Consensus 154 ~~~~~GvVrvWDvkd~ 169 (569)
.|..+|.|||||+...
T Consensus 111 ~G~~dg~i~i~d~~~~ 126 (417)
T 3acp_A 111 LGTTEGDIKVLDSNFN 126 (417)
T ss_dssp EEETTSCEEEEETTCC
T ss_pred EEECCCEEEEEECCCC
T ss_conf 9968897999999999
No 40
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=25.60 E-value=16 Score=15.25 Aligned_cols=23 Identities=48% Similarity=0.835 Sum_probs=11.9
Q ss_pred CCEEEEEECC------------CHHHHHHHCCCCH
Q ss_conf 8758997357------------6467764206604
Q T0529 158 DGVVRVWDVK------------NAELLNNQFGTMP 180 (569)
Q Consensus 158 ~GvVrvWDvk------------d~sll~NQFGsmP 180 (569)
.-+|--|+|+ |-..|++|||.-|
T Consensus 24 ~~~v~pw~v~~~~~~~~~~~~idy~kl~~~fg~~~ 58 (432)
T 2ip1_A 24 EQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKP 58 (432)
T ss_dssp ----------------------CHHHHHHHHTCEE
T ss_pred CCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 64057752004556666645676999999958886
No 41
>3k0z_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NHE; 1.91A {Bacillus cereus atcc 10987}
Probab=25.51 E-value=26 Score=13.71 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCHHHHHHHCCCCHH
Q ss_conf 88875899735764677642066046
Q T0529 156 GRDGVVRVWDVKNAELLNNQFGTMPS 181 (569)
Q Consensus 156 ~~~GvVrvWDvkd~sll~NQFGsmPa 181 (569)
..+-|++.|+.-|..-|..|+|-||.
T Consensus 133 ~dGkI~e~~~~~D~~~l~~QLG~~p~ 158 (159)
T 3k0z_A 133 KDGKITEDWHLEDNLTLKQQLGLIAE 158 (159)
T ss_dssp ETTEEEEEEEEECHHHHHHHTTSCC-
T ss_pred ECCEEEEEEEECCHHHHHHHCCCCCC
T ss_conf 99999999984189999987789999
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=25.08 E-value=20 Score=14.51 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=12.0
Q ss_pred CCCCCEEEEEECCCHHHH
Q ss_conf 788875899735764677
Q T0529 155 AGRDGVVRVWDVKNAELL 172 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~sll 172 (569)
+..+|.+++||+++..++
T Consensus 229 g~~DGsi~lWd~~~g~~~ 246 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EETTCCEEEEETTTCCEE
T ss_pred EECCCEEEEEECCCCCEE
T ss_conf 917997998547999676
No 43
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=24.60 E-value=27 Score=13.60 Aligned_cols=83 Identities=24% Similarity=0.381 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCC
Q ss_conf 89999988999999975203677885032166477899999999984367655677778887589973576467764206
Q T0529 98 DLLILAADLEKLKSKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDVKNAELLNNQFG 177 (569)
Q Consensus 98 eLm~LasDLeKLk~Kv~rtEr~~~~gvY~GNLt~~QL~~Rs~iL~~vG~~~~~~~~~~~~~GvVrvWDvkd~sll~NQFG 177 (569)
=|+++|=-|-+...|++--|||.+. .|.++-.-- =+..|++.+--. +. -.+
T Consensus 158 lLI~fSYeLSr~Eg~~G~PEkPLSd---LG~~sY~~Y-W~~~il~~L~~~------~~-------------------~~~ 208 (280)
T 2ou2_A 158 LLIEFSYELSKVEGKTGTPEKPLSD---LGLLSYRSY-WSQTILEILMGL------KS-------------------ESG 208 (280)
T ss_dssp HHHHHHHHHHHHTTCCBEECSSCCH---HHHHHHHHH-HHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCH---HHHHHHHHH-HHHHHHHHHHHH------CC-------------------CCC
T ss_conf 3486663776227988999998887---899999999-999999999971------54-------------------557
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEE
Q ss_conf 60467888864405653678999875212003
Q T0529 178 TMPSLTLACLTKQGQVDLNDAVQALTDLGLIY 209 (569)
Q Consensus 178 smPalTiaCMt~Qgge~lndVVQ~Lt~LGLlY 209 (569)
....+||.=++...|-...||+.+|..+|++.
T Consensus 209 ~~~~isi~dis~~T~i~~~Dii~tL~~l~~l~ 240 (280)
T 2ou2_A 209 ERPQITINEISEITSIKKEDVISTLQYLNLIN 240 (280)
T ss_dssp ---CCBHHHHHHHHCBCHHHHHHHHHHTTCCC
T ss_pred CCCCEEHHHHHHHHCCCHHHHHHHHHHCCCEE
T ss_conf 77748099998872998999999999779789
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3dxk_C* 3dxm_C*
Probab=24.59 E-value=17 Score=15.13 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=11.2
Q ss_pred CCCCCEEEEEECCCH
Q ss_conf 788875899735764
Q T0529 155 AGRDGVVRVWDVKNA 169 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~ 169 (569)
+..+|.|+|||+...
T Consensus 26 ~~~d~~i~iw~~~~~ 40 (372)
T 1k8k_C 26 CPNNHEVHIYEKSGN 40 (372)
T ss_dssp ECSSSEEEEEEEETT
T ss_pred EECCCEEEEEECCCC
T ss_conf 928998999988899
No 45
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=24.48 E-value=27 Score=13.58 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=26.0
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 72577767899999889999999752036
Q T0529 90 RVGTLTSDDLLILAADLEKLKSKVIRTER 118 (569)
Q Consensus 90 kvG~LskdeLm~LasDLeKLk~Kv~rtEr 118 (569)
.+|.|+-|++++.....|+|.-||+..-+
T Consensus 20 ~~G~lt~D~~~~~eG~~eql~Gk~Q~~~G 48 (69)
T 1ryk_A 20 QWGKLTDDDMTIIEGKRDQLVGKIQERYG 48 (69)
T ss_dssp HTCSSCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHCCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98810498888957759999989999982
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on protein structural and functional analysis, structural genomics consortium; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.13 E-value=22 Score=14.18 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=9.4
Q ss_pred CCCCCEEEEEECCCHH
Q ss_conf 7888758997357646
Q T0529 155 AGRDGVVRVWDVKNAE 170 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~s 170 (569)
++.+|.|||||++.-.
T Consensus 91 g~~dg~I~iwd~~~~~ 106 (366)
T 3k26_A 91 AGSRGIIRIINPITMQ 106 (366)
T ss_dssp EETTCEEEEECTTTCC
T ss_pred EECCCEEEEEECCCCC
T ss_conf 9188959999999995
No 47
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=23.08 E-value=23 Score=14.12 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.7
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 88875899735764
Q T0529 156 GRDGVVRVWDVKNA 169 (569)
Q Consensus 156 ~~~GvVrvWDvkd~ 169 (569)
..+|.|||||+...
T Consensus 167 s~D~~v~vwd~~~~ 180 (611)
T 1nr0_A 167 SDDNTVAIFEGPPF 180 (611)
T ss_dssp ETTSCEEEEETTTB
T ss_pred ECCCEEEEEECCCC
T ss_conf 68983788850588
No 48
>1l4s_A Protein YFIA; ribosome binding protein, translation; NMR {Escherichia coli} SCOP: d.204.1.1 PDB: 1n3g_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=22.61 E-value=18 Score=14.95 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHHHHCC
Q ss_conf 788889999999986138
Q T0529 364 GLTYSQLMTLKDAMLQLD 381 (569)
Q Consensus 364 ~Lt~~qe~~ik~~m~~Ld 381 (569)
.+|++....+.+-+.+|+
T Consensus 10 ~~t~alk~~i~~kl~kl~ 27 (112)
T 1l4s_A 10 EITPAIRQHVADRLAKLE 27 (112)
T ss_dssp CCCHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 569899999999999998
No 49
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=22.45 E-value=30 Score=13.31 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7678999998899999997520
Q T0529 95 TSDDLLILAADLEKLKSKVIRT 116 (569)
Q Consensus 95 skdeLm~LasDLeKLk~Kv~rt 116 (569)
+.+..++.|..|-++..|.+|.
T Consensus 53 s~e~~le~A~~lk~~~~~~~~~ 74 (298)
T 3fs2_A 53 TRDHAFEMAGRLKEMTDKLGIG 74 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999985979
No 50
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=22.06 E-value=30 Score=13.26 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCCCCCEEEEECCCCC----------CCEEEEEEECCCCC----EEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCC-
Q ss_conf 3899865786047898----------96478887079986----78885075510021212641001116554024753-
Q T0529 380 LDPNAKTWMDIEGRPE----------DPVEIALYQPSSGC----YIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG- 444 (569)
Q Consensus 380 Ldp~~tTWiDIEG~p~----------DPVElAiyQP~sg~----YIHcyR~P~D~K~FK~~SKysHGillkDl~~aqPG- 444 (569)
...+....+|.|-.-- -.+|||..--+.+. -.|.|-+|..... ....--|||.-.++..+.+=
T Consensus 6 ~~~~~~vv~D~ETTGl~~~~~~~~~d~IieIgaV~~~~~~~~~~~f~~~v~P~~~~~--~~~~~i~git~e~~~~~~~~~ 83 (194)
T 2gui_A 6 TAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVD--PEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp --CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCC--HHHHHHHCCCHHHHTTSCCHH
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCCC--HHHHHHCCCCHHHHHHHHHHH
T ss_conf 777856999982799987645678965999999999999997118999989998665--778876275477643235489
Q ss_pred -HHHHHHHHCCCCCEEEECCHHHHHHHHHH---CCCCCEE---EEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf -68999974586648981382899999984---4996226---7864306478877788889988778864285043312
Q T0529 445 -LTSAVIDALPRNMVITCQGSDDIRKLLES---QGRKDIK---LIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKK 517 (569)
Q Consensus 445 -L~S~vI~~LP~~MVlT~QGsDDIrkLld~---hGRkDiK---liDV~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi~kK 517 (569)
....+...+-..-++-.-.+.|...+... +|+.... ..++.-+..-+|.+--.-|-+-..+|... |+-
T Consensus 84 e~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~L~~l~~~~-~i~---- 158 (194)
T 2gui_A 84 EVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARY-EID---- 158 (194)
T ss_dssp HHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHT-TCC----
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHC-CCC----
T ss_conf 988999875289817886641109999999998199976555442057699999997589998999999985-999----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46888887603788999998666
Q T0529 518 KRGGKEEITPHCALMDCIMFDAA 540 (569)
Q Consensus 518 KKg~~~~~tpHCALlDCiMF~a~ 540 (569)
.+.-.+|=||-||.+--.+
T Consensus 159 ----~~~~~aH~Al~Da~~t~~v 177 (194)
T 2gui_A 159 ----NSKRTLHGALLDAQILAEV 177 (194)
T ss_dssp ----CTTCSSCCHHHHHHHHHHH
T ss_pred ----CCCCCCCCHHHHHHHHHHH
T ss_conf ----8999873889999999999
No 51
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 1trj_A 3jyv_R*
Probab=21.07 E-value=22 Score=14.31 Aligned_cols=17 Identities=24% Similarity=0.564 Sum_probs=12.7
Q ss_pred CCCCCCEEEEEECCCHH
Q ss_conf 77888758997357646
Q T0529 154 RAGRDGVVRVWDVKNAE 170 (569)
Q Consensus 154 ~~~~~GvVrvWDvkd~s 170 (569)
.+..+|.|||||+....
T Consensus 35 s~s~Dg~i~vW~~~~~~ 51 (319)
T 3frx_A 35 SASRDKTLISWKLTGDD 51 (319)
T ss_dssp EEETTSEEEEEEEEEET
T ss_pred EECCCCEEEEEECCCCC
T ss_conf 99189929998899997
Done!