Query T0529 Nucleoprotein structure of lassa fever virus, unknown, 569 residues
Match_columns 569
No_of_seqs 39 out of 41
Neff 2.4
Searched_HMMs 15564
Date Fri May 21 18:06:03 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0529.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0529.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wlja_ c.55.3.5 (A:) Interfer 92.6 0.11 7.4E-06 29.8 5.1 140 385-537 2-153 (173)
2 d3b6oa1 c.55.3.5 (A:9-234) Thr 78.1 2.3 0.00015 20.3 5.1 143 386-543 7-202 (226)
3 d1w0ha_ c.55.3.5 (A:) Exonucle 65.8 4.3 0.00028 18.3 8.1 142 387-542 10-185 (200)
4 d1y97a1 c.55.3.5 (A:1-228) Thr 60.5 5.3 0.00034 17.6 6.6 141 386-541 11-201 (228)
5 d2guia1 c.55.3.5 (A:7-180) N-t 54.1 6.7 0.00043 16.9 5.3 132 397-539 24-167 (174)
6 d2f96a1 c.55.3.5 (A:19-220) Ri 53.2 6.9 0.00044 16.8 9.0 143 385-538 13-185 (202)
7 d1u7la_ e.57.1.1 (A:) Vacuolar 50.7 5.8 0.00037 17.3 2.7 24 88-113 48-71 (388)
8 d1ofcx1 a.4.1.3 (X:799-850) SA 37.3 4.9 0.00032 17.8 0.6 38 468-505 11-51 (52)
9 d2bbha1 d.328.1.1 (A:13-244) M 36.5 9.3 0.0006 15.8 1.9 18 378-395 40-57 (232)
10 d1x4ta1 a.2.15.1 (A:7-86) Pre- 34.3 12 0.00079 14.9 2.2 19 64-82 45-63 (80)
11 d1x4ta1 a.2.15.1 (A:7-86) Pre- 33.7 13 0.00082 14.8 2.2 19 64-82 45-63 (80)
12 d1oqva_ d.24.1.2 (A:) Toxin-co 28.6 3.8 0.00024 18.7 -1.2 51 211-261 27-86 (171)
13 d2bjqa1 b.169.1.1 (A:175-344) 27.9 12 0.00078 15.0 1.3 32 296-339 35-69 (170)
14 d1u7la_ e.57.1.1 (A:) Vacuolar 26.4 17 0.0011 13.8 2.6 25 88-114 48-72 (388)
15 d2if6a1 d.3.1.21 (A:19-200) Hy 25.1 15 0.00095 14.3 1.4 32 403-436 1-37 (182)
16 d2bjqa1 b.169.1.1 (A:175-344) 25.1 15 0.00098 14.3 1.4 29 299-339 39-69 (170)
17 d1k8kc_ b.69.4.1 (C:) Arp2/3 c 24.8 11 0.00073 15.2 0.7 15 155-169 25-39 (371)
18 d1yfqa_ b.69.4.2 (A:) Cell cyc 24.2 2.9 0.00019 19.5 -2.4 16 155-170 29-44 (342)
19 d2d69a2 d.58.9.1 (A:8-133) Rib 23.0 16 0.001 14.2 1.1 99 363-494 28-126 (126)
20 d1ryka_ a.60.11.1 (A:) Hypothe 22.6 20 0.0013 13.3 1.9 29 90-118 20-48 (69)
21 d1erja_ b.69.4.1 (A:) Tup1, C- 21.6 16 0.001 14.1 1.0 18 156-173 80-97 (388)
22 d1ryka_ a.60.11.1 (A:) Hypothe 21.6 21 0.0014 13.2 1.9 29 90-118 20-48 (69)
23 d1wdda2 d.58.9.1 (A:11-150) Ri 21.4 19 0.0012 13.5 1.3 39 440-495 101-139 (140)
24 d2a21a1 c.1.10.4 (A:1002-1264) 21.4 21 0.0014 13.2 3.4 36 253-289 209-256 (263)
25 d1geha2 d.58.9.1 (A:12-136) Ri 21.3 16 0.001 14.2 0.8 37 441-494 89-125 (125)
26 d1p22a2 b.69.4.1 (A:253-545) F 21.0 20 0.0013 13.4 1.4 19 153-171 29-47 (293)
27 d2geya1 d.17.4.9 (A:2-145) Put 20.5 22 0.0014 13.0 1.6 24 157-180 110-133 (144)
28 d1sq9a_ b.69.4.1 (A:) Antivira 20.3 15 0.00097 14.3 0.6 24 397-420 255-278 (393)
29 d1l4sa_ d.204.1.1 (A:) Ribosom 20.3 15 0.00094 14.4 0.6 19 363-381 9-27 (112)
30 d2foka4 c.52.1.12 (A:387-579) 20.1 10 0.00065 15.6 -0.3 26 481-506 25-50 (193)
No 1
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.62 E-value=0.11 Score=29.82 Aligned_cols=140 Identities=12% Similarity=0.139 Sum_probs=81.3
Q ss_pred CEEEEECCC----CCCC-EE-EEEEECCCCC-EEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCC--CHHHHHHHHCCC
Q ss_conf 657860478----9896-47-8887079986-7888507551002121264100111655402475--368999974586
Q T0529 385 KTWMDIEGR----PEDP-VE-IALYQPSSGC-YIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVIDALPR 455 (569)
Q Consensus 385 tTWiDIEG~----p~DP-VE-lAiyQP~sg~-YIHcyR~P~D~K~FK~~SKysHGillkDl~~aqP--GL~S~vI~~LP~ 455 (569)
-.|||+|-. ..|- ++ +||. ...|. ..|.|-+|.. .+...+.--|||--.++.++.| -....+...+ .
T Consensus 2 ~v~iD~EttGl~~~~~~ii~~~~iv-~~~g~~i~~~~v~p~~--~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~-~ 77 (173)
T d1wlja_ 2 VVAMDCEMVGLGPHRESGLARCSLV-NVHGAVLYDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVARLEILQLL-K 77 (173)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEE-CTTCCEEEEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH-T
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEE-EECCEEEEEEEEECCC--CCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHC-C
T ss_conf 8999978289999998679999999-9669599999630243--2470206772476203203773777778887632-4
Q ss_pred CCEEEECCHH-HHHHHHHHCCCCCEEEEEEEE-CHHHH-HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 6489813828-999999844996226786430-64788-77788889988778864285043312468888876037889
Q T0529 456 NMVITCQGSD-DIRKLLESQGRKDIKLIDIAL-SKTDS-RKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALM 532 (569)
Q Consensus 456 ~MVlT~QGsD-DIrkLld~hGRkDiKliDV~l-s~eqs-R~FEd~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALl 532 (569)
+-++-+.... |++-|- ...+ ...+.|... +...+ +.|....+-..+.||....|+-++ ++..+|.||-
T Consensus 78 ~~~lv~hn~~fD~~~L~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~-------~~~~~H~Al~ 148 (173)
T d1wlja_ 78 GKLVVGHDLKHDFQALK-EDMS-GYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQ-------NSLLGHSSVE 148 (173)
T ss_dssp TSEEEESSHHHHHHHTT-CCCT-TCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCS-------CCTTCCCHHH
T ss_pred CCEEEEECHHHHHHHHH-HHHC-CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC-------CCCCCCCHHH
T ss_conf 54388632076999998-7641-4742333688999998762156776789999998388666-------8998878199
Q ss_pred HHHHH
Q ss_conf 99998
Q T0529 533 DCIMF 537 (569)
Q Consensus 533 DCiMF 537 (569)
||.+-
T Consensus 149 Da~at 153 (173)
T d1wlja_ 149 DARAT 153 (173)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 2
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.08 E-value=2.3 Score=20.28 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=83.8
Q ss_pred EEEEECCCC-----CCCEEEEEEECCCC-------------------CE---EEEEECCCCHHHHHCCCCCCCCCHHHHH
Q ss_conf 578604789-----89647888707998-------------------67---8885075510021212641001116554
Q T0529 386 TWMDIEGRP-----EDPVEIALYQPSSG-------------------CY---IHFFREPTDLKQFKQDAKYSHGIDVTDL 438 (569)
Q Consensus 386 TWiDIEG~p-----~DPVElAiyQP~sg-------------------~Y---IHcyR~P~D~K~FK~~SKysHGillkDl 438 (569)
.|+|+|-.- ...+|+|+..-+.+ .. .+++=+|+ +.....+-.-|||--.++
T Consensus 7 v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~--~~I~~~~~~i~GIt~~~l 84 (226)
T d3b6oa1 7 IFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPG--KACSPGASEITGLSKAEL 84 (226)
T ss_dssp EEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCS--SCCCHHHHHHHCCCHHHH
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCC--CCCCHHHHHHCCCCHHHH
T ss_conf 999987789799998659999999857864444221000124566563101012467889--979988998629899999
Q ss_pred HCCCC--------CHHHHHHHHCCCCCEEEECC--HHHHHHH---HHHCCCC----CEEEEEEEECHHHHHHHHHHHHHH
Q ss_conf 02475--------36899997458664898138--2899999---9844996----226786430647887778888998
Q T0529 439 FATQP--------GLTSAVIDALPRNMVITCQG--SDDIRKL---LESQGRK----DIKLIDIALSKTDSRKYENAVWDQ 501 (569)
Q Consensus 439 ~~aqP--------GL~S~vI~~LP~~MVlT~QG--sDDIrkL---ld~hGRk----DiKliDV~ls~eqsR~FEd~VWd~ 501 (569)
..+.. .+....++.++..-++-+.. +-|.+-| |.-+|.. +...+|. -.-+|.+....|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDt---l~l~~~~~~~~~~~ 161 (226)
T d3b6oa1 85 EVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDS---IAALKALEQASSPS 161 (226)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEH---HHHHHHHHTC----
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH---HHHHHHHCCCCCCC
T ss_conf 745462267799999999987425884599851168789999999998299888776208999---99999754334333
Q ss_pred ---------HHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf ---------877886428504331246888887603788999998666437
Q T0529 502 ---------YKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDAAVSG 543 (569)
Q Consensus 502 ---------f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a~~~G 543 (569)
-..||..-. +.+...+|=||-||.|--.++.-
T Consensus 162 ~~~~~~~~~L~~l~~~~~----------g~~~~~aH~Al~D~~~~~~l~~~ 202 (226)
T d3b6oa1 162 GNGSRKSYSLGSIYTRLY----------WQAPTDSHTAEGDVLTLLSICQW 202 (226)
T ss_dssp -----CCCSHHHHHHHHH----------SSCCSSTTSHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHC----------CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 445656754499999971----------99999886859999999999999
No 3
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.84 E-value=4.3 Score=18.28 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=74.0
Q ss_pred EEEEC------CCCCC---CEEEEE--EECCCCCEE---EEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHH---H
Q ss_conf 78604------78989---647888--707998678---8850755100212126410011165540247536899---9
Q T0529 387 WMDIE------GRPED---PVEIAL--YQPSSGCYI---HFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSA---V 449 (569)
Q Consensus 387 WiDIE------G~p~D---PVElAi--yQP~sg~YI---HcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~---v 449 (569)
=+|+| |++.. .+|||. +-+.++... ++|-+|.+-......+..-|||--.++.++.| +-.+ +
T Consensus 10 v~D~EtT~~~~~~~~~~~~Iieigav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~~-~~~~~~~~ 88 (200)
T d1w0ha_ 10 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT-FPQVLKKV 88 (200)
T ss_dssp ECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC-HHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHH-HHHHHHHH
T ss_conf 99985689889999999807999999998799769889888886376666898899897888877000134-57679999
Q ss_pred HH---H----CCCCCEEEECCHHHHHHH----HHHCCCC----CEEEEEEEECHHHHHHHHHHHH--HHHHHHHHHCCCC
Q ss_conf 97---4----586648981382899999----9844996----2267864306478877788889--9887788642850
Q T0529 450 ID---A----LPRNMVITCQGSDDIRKL----LESQGRK----DIKLIDIALSKTDSRKYENAVW--DQYKDLCHMHTGV 512 (569)
Q Consensus 450 I~---~----LP~~MVlT~QGsDDIrkL----ld~hGRk----DiKliDV~ls~eqsR~FEd~VW--d~f~~LC~~H~Gi 512 (569)
.. . -..+..+-.-|+-|.++. +...+.. ....+|+.- ..+.+-..-+ -+-..+|.. -|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~~~~~~~~~~p~~~~~~~d~~~---~~~~~~~~~~~~~~L~~l~~~-~gi 164 (200)
T d1w0ha_ 89 IDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRK---SYGNFYKVPRSQTKLTIMLEK-LGM 164 (200)
T ss_dssp HHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHH---HHHHHHTCCGGGCSHHHHHHH-TTC
T ss_pred HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHH---HHHHHCCCCCCCHHHHHHHHH-CCC
T ss_conf 9996489378410100015505548999999998606887643543145776---766530464346589999998-599
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 433124688888760378899999866643
Q T0529 513 VVEKKKRGGKEEITPHCALMDCIMFDAAVS 542 (569)
Q Consensus 513 Vi~kKKKg~~~~~tpHCALlDCiMF~a~~~ 542 (569)
..+-.+|-||-||+.--.++.
T Consensus 165 ---------~~~~~aH~Al~Da~~~a~v~~ 185 (200)
T d1w0ha_ 165 ---------DYDGRPHCGLDDSKNIARIAV 185 (200)
T ss_dssp ---------CCCSCTTCHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCCHHHHHHHHHHHHH
T ss_conf ---------989988476999999999999
No 4
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.53 E-value=5.3 Score=17.61 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=77.1
Q ss_pred EEEEECCC-----CCCCEEEEEEECCCC-------------------CEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCC
Q ss_conf 57860478-----989647888707998-------------------678885075510021212641001116554024
Q T0529 386 TWMDIEGR-----PEDPVEIALYQPSSG-------------------CYIHFFREPTDLKQFKQDAKYSHGIDVTDLFAT 441 (569)
Q Consensus 386 TWiDIEG~-----p~DPVElAiyQP~sg-------------------~YIHcyR~P~D~K~FK~~SKysHGillkDl~~a 441 (569)
.|+|.|-. .+..+|+|+..=..+ .-.|.|=+|+- .....+.--|||--.+|..+
T Consensus 11 v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~--~i~~~~~~itGIt~~~l~~~ 88 (228)
T d1y97a1 11 VFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSSEGLARC 88 (228)
T ss_dssp EEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCHHHHHHT
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEEECCCC--CCCHHHHHHCCCCHHHHHHC
T ss_conf 9999766896999987599999999888522232322223566621012006788899--79989997519999999716
Q ss_pred CCC--------HHHHHHHHCCCCCEEEECC--HHH---HHHHHHHCCC---CCEEEEEEEECHHHHHHHHH-H-------
Q ss_conf 753--------6899997458664898138--289---9999984499---62267864306478877788-8-------
Q T0529 442 QPG--------LTSAVIDALPRNMVITCQG--SDD---IRKLLESQGR---KDIKLIDIALSKTDSRKYEN-A------- 497 (569)
Q Consensus 442 qPG--------L~S~vI~~LP~~MVlT~QG--sDD---IrkLld~hGR---kDiKliDV~ls~eqsR~FEd-~------- 497 (569)
.+- +..........+-++-+.. +-| +++.|.-+|. .....+|... -+|.+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~---~~r~l~~~~~~~~~~~ 165 (228)
T d1y97a1 89 RKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLP---ALRGLDRAHSHGTRAR 165 (228)
T ss_dssp TCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHH---HHHHHHHHC-------
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHCCCCCCCC
T ss_conf 3763589999999998654237834786222777699999999982998888964136899---9998521223555567
Q ss_pred --HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --89988778864285043312468888876037889999986664
Q T0529 498 --VWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDAAV 541 (569)
Q Consensus 498 --VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a~~ 541 (569)
-|-+...||....| .+...+|.|+-||++--.++
T Consensus 166 ~~~~~~L~~l~~~~~~----------~~~~~aH~Al~Da~at~~l~ 201 (228)
T d1y97a1 166 GRQGYSLGSLFHRYFR----------AEPSAAHSAEGDVHTLLLIF 201 (228)
T ss_dssp ---CCSHHHHHHHHHS----------SCCC---CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCC----------CCCCCCCCHHHHHHHHHHHH
T ss_conf 6788688999999549----------89798979899999999999
No 5
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=54.07 E-value=6.7 Score=16.87 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=66.7
Q ss_pred CEEEEEEECCC----CCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCCH--HHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf 64788870799----86788850755100212126410011165540247536--8999974586648981382899999
Q T0529 397 PVEIALYQPSS----GCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGL--TSAVIDALPRNMVITCQGSDDIRKL 470 (569)
Q Consensus 397 PVElAiyQP~s----g~YIHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL--~S~vI~~LP~~MVlT~QGsDDIrkL 470 (569)
-+|+|.--=+. ....|.|-+|+. .+...+.--|||--.++..+.+-- ...+...+-...++..-..-|...+
T Consensus 24 IIeIg~v~~~~~~~~~~~~~~~v~P~~--~i~~~~~~i~gIt~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~ 101 (174)
T d2guia1 24 IIEIGAVEVVNRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFM 101 (174)
T ss_dssp EEEEEEEEEETTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHHHHHHHHHHHTTSEEEETTHHHHHHHH
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCC--CCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 999999999999995137888750476--311134321455166532002378887999986289737876402146777
Q ss_pred ---HHHCCCCCEEEEE---EEECHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---9844996226786---43064788777888899887788642850433124688888760378899999866
Q T0529 471 ---LESQGRKDIKLID---IALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDCIMFDA 539 (569)
Q Consensus 471 ---ld~hGRkDiKliD---V~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi~kKKKg~~~~~tpHCALlDCiMF~a 539 (569)
+...++.....-. +.-+..-+|.+-..-.-+-..+|... |+. .+.-.+|-||-||.+--.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~L~~l~~~~-~~~--------~~~~~~H~Al~Da~~ta~ 167 (174)
T d2guia1 102 DYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARY-EID--------NSKRTLHGALLDAQILAE 167 (174)
T ss_dssp HHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHT-TCC--------CTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHC-CCC--------CCCCCCCCHHHHHHHHHH
T ss_conf 899998488877754344045599999987489977899999985-989--------998987687999999999
No 6
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.15 E-value=6.9 Score=16.77 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=79.1
Q ss_pred CEEEEECCC-----CCCCEEEEEE--EC-CCCCEE-----EEEECCCCHHHHHCCCCCCCCCHHHHHHCCCCC-------
Q ss_conf 657860478-----9896478887--07-998678-----885075510021212641001116554024753-------
Q T0529 385 KTWMDIEGR-----PEDPVEIALY--QP-SSGCYI-----HFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG------- 444 (569)
Q Consensus 385 tTWiDIEG~-----p~DPVElAiy--QP-~sg~YI-----HcyR~P~D~K~FK~~SKysHGillkDl~~aqPG------- 444 (569)
+.++|+|-. .+..+|+|.- .+ +.+..+ +++-.|.....+...+.--|||....+..+..-
T Consensus 13 ~Vv~D~ETTGl~~~~~~IIeigav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~ 92 (202)
T d2f96a1 13 PVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTE 92 (202)
T ss_dssp EEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHH
T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHCCCCHHHHHHH
T ss_conf 17999768998988883499999998851567263113577752267666688778876187478887515532677999
Q ss_pred HHH----HHHHHCCCCCEEEECCHH-HHHHHHHHC-----CCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 689----999745866489813828-999999844-----9962267864306478877788889988778864285043
Q T0529 445 LTS----AVIDALPRNMVITCQGSD-DIRKLLESQ-----GRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVV 514 (569)
Q Consensus 445 L~S----~vI~~LP~~MVlT~QGsD-DIrkLld~h-----GRkDiKliDV~ls~eqsR~FEd~VWd~f~~LC~~H~GiVi 514 (569)
... .+....+....+...... |.+-+-.+. ........|+-.....++. ...|-+...+|... |+-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~~~~~~-gi~- 168 (202)
T d2f96a1 93 IFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGL--AYGQTVLAKACQAA-GME- 168 (202)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHH--HHSCCSHHHHHHHT-TCC-
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCCCCHHHHHHHC-CCC-
T ss_conf 99999998775125544011131112178899999981997677743231246555311--34776799999982-989-
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 312468888876037889999986
Q T0529 515 EKKKRGGKEEITPHCALMDCIMFD 538 (569)
Q Consensus 515 ~kKKKg~~~~~tpHCALlDCiMF~ 538 (569)
.+..++|.||-||++--
T Consensus 169 -------~~~~~aH~Al~Da~~ta 185 (202)
T d2f96a1 169 -------FDNREAHSARYDTEKTA 185 (202)
T ss_dssp -------CCTTSCCCHHHHHHHHH
T ss_pred -------CCCCCCCCHHHHHHHHH
T ss_conf -------99997778699999999
No 7
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.74 E-value=5.8 Score=17.33 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 68725777678999998899999997
Q T0529 88 ILRVGTLTSDDLLILAADLEKLKSKV 113 (569)
Q Consensus 88 ~lkvG~LskdeLm~LasDLeKLk~Kv 113 (569)
-||||+| |.||.|+-||.|+-.-|
T Consensus 48 ~lKvGTL--DsLv~lsDeL~KlD~~v 71 (388)
T d1u7la_ 48 EFKIGSL--DTLIVESEELSKVDNQI 71 (388)
T ss_dssp CCBCSCG--GGHHHHHHHHHHHHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHHHHHHH
T ss_conf 7771359--99998788888788899
No 8
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.28 E-value=4.9 Score=17.84 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCEEEEEEEE---CHHHHHHHHHHHHHHHHHH
Q ss_conf 9999844996226786430---6478877788889988778
Q T0529 468 RKLLESQGRKDIKLIDIAL---SKTDSRKYENAVWDQYKDL 505 (569)
Q Consensus 468 rkLld~hGRkDiKliDV~l---s~eqsR~FEd~VWd~f~~L 505 (569)
.+..+.+||.|+.-|--.+ |.|+-+.|-..-|+||..+
T Consensus 11 i~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry~ei 51 (52)
T d1ofcx1 11 IKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTEL 51 (52)
T ss_dssp HHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999988755999999866999999999999999987750
No 9
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=36.47 E-value=9.3 Score=15.81 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.9
Q ss_pred HHCCCCCCEEEEECCCCC
Q ss_conf 613899865786047898
Q T0529 378 LQLDPNAKTWMDIEGRPE 395 (569)
Q Consensus 378 ~~Ldp~~tTWiDIEG~p~ 395 (569)
.-+++...+||||+|+.+
T Consensus 40 ~~~~~~~~~Widi~~~~~ 57 (232)
T d2bbha1 40 PFRDSSTPTWINITGIHR 57 (232)
T ss_dssp GGGGCSSCEEEEEECTTC
T ss_pred HCCCCCCCEEEEECCCCC
T ss_conf 316888758998279998
No 10
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.33 E-value=12 Score=14.94 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999888899877775320
Q T0529 64 LKRLRDLNQAVNNLVELKS 82 (569)
Q Consensus 64 L~~LRDlNkeVd~Lm~mkS 82 (569)
-..+||||-|++.|+.-|.
T Consensus 45 e~~IRdLNDeINkL~~eK~ 63 (80)
T d1x4ta1 45 EFRIRDLNDEINKLLREKG 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 6789998799889999878
No 11
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.74 E-value=13 Score=14.82 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999888899877775320
Q T0529 64 LKRLRDLNQAVNNLVELKS 82 (569)
Q Consensus 64 L~~LRDlNkeVd~Lm~mkS 82 (569)
-.++||||-|++.||--|.
T Consensus 45 e~~IRdLNDeINkL~reK~ 63 (80)
T d1x4ta1 45 EFRIRDLNDEINKLLREKG 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7999998999999999999
No 12
>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio cholerae [TaxId: 666]}
Probab=28.62 E-value=3.8 Score=18.69 Aligned_cols=51 Identities=29% Similarity=0.405 Sum_probs=36.0
Q ss_pred ECCC---CHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHH------HHHHHHCCEEECC
Q ss_conf 4178---8679998852187111014654300100002136------6665414001106
Q T0529 211 AKYP---NTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSL------GAAVKAGACMLDG 261 (569)
Q Consensus 211 ~KyP---Nl~DLekLt~~Hp~L~iIt~~~S~iNISGYNlSL------sAAVKAGA~liDG 261 (569)
.+|| .-..+.|||..--.|+-|+.+|--.+|||-++-. +|+-|+=|-.+||
T Consensus 27 G~YP~~~d~~~~~~lT~gLV~LGKIS~DEa~N~fsG~~~~I~s~~~n~a~nKgFaI~vnG 86 (171)
T d1oqva_ 27 GNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDG 86 (171)
T ss_dssp SSCCCCSSHHHHHHHHHHHHHTTSSCHHHHBCTTTSSBCEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC
T ss_conf 888764364666566777775478678883287768742453135775100505899778
No 13
>d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]} SCOP: d2bjra2 d2bjqa2 d2bjra1
Probab=27.91 E-value=12 Score=14.98 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=19.8
Q ss_pred CCCC-CCCHHHHHHHHEECCCCCCCEEECCEEEEEEE-CCE-EEEEC
Q ss_conf 8778-88445445011015798630001240100110-340-68707
Q T0529 296 TPGE-RNPYENILYKICLSGDGWPYIASRTSITGRAW-ENT-VVDLE 339 (569)
Q Consensus 296 ~PG~-RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAW-DNT-~VDl~ 339 (569)
-||. -|-|--|-||- | .-|.|||| ||- +|.-+
T Consensus 35 ~~~~~~~qYVALWY~~-----G-------~Pv~GRaW~n~gg~v~~~ 69 (170)
T d2bjqa1 35 DDGTEMFQYVALWYEH-----G-------QPVFGRAYPDSADKTLAN 69 (170)
T ss_dssp TTSSEECCEEEEEEET-----T-------EEEEEEEEECTTSBEEEE
T ss_pred CCCCCCCEEEEEEEEC-----C-------CCEEEEEECCCCCEEEEE
T ss_conf 7888865068865306-----9-------725657881899839998
No 14
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.41 E-value=17 Score=13.83 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=20.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 687257776789999988999999975
Q T0529 88 ILRVGTLTSDDLLILAADLEKLKSKVI 114 (569)
Q Consensus 88 ~lkvG~LskdeLm~LasDLeKLk~Kv~ 114 (569)
-||||+| |.||.+|-||.||-.-+.
T Consensus 48 dlKvGTL--DsLv~~sDeL~KlD~~~e 72 (388)
T d1u7la_ 48 EFKIGSL--DTLIVESEELSKVDNQIG 72 (388)
T ss_dssp CCBCSCG--GGHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHHHHHHHH
T ss_conf 6510367--999876466888999999
No 15
>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia coli [TaxId: 562]}
Probab=25.13 E-value=15 Score=14.34 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=15.6
Q ss_pred EECCCCCEEEEEECCCCH----HHHHCCCCCCC-CCHHH
Q ss_conf 707998678885075510----02121264100-11165
Q T0529 403 YQPSSGCYIHFFREPTDL----KQFKQDAKYSH-GIDVT 436 (569)
Q Consensus 403 yQP~sg~YIHcyR~P~D~----K~FK~~SKysH-Gillk 436 (569)
|||++|--|-+ +-.... +. --+|.||| ||.++
T Consensus 1 ~q~q~GDIlf~-~~~s~~s~aI~~-~T~s~~sHvgIv~~ 37 (182)
T d2if6a1 1 WQPQTGDIIFQ-ISRSSQSKAIQL-ATHSDYSHTGMLVM 37 (182)
T ss_dssp CCCCTTCEEEE-CCCSTTHHHHHH-HHTSSCCEEEEEEE
T ss_pred CCCCCCCEEEE-ECCCCHHHHHHH-HHCCCCCEEEEEEE
T ss_conf 99888358999-679857999999-82899825999997
No 16
>d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Probab=25.10 E-value=15 Score=14.25 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHEECCCCCCCEEECCEEEEEEE-CC-EEEEEC
Q ss_conf 888445445011015798630001240100110-34-068707
Q T0529 299 ERNPYENILYKICLSGDGWPYIASRTSITGRAW-EN-TVVDLE 339 (569)
Q Consensus 299 ~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAW-DN-T~VDl~ 339 (569)
+-|-|--|-||- | .-|.|||| || -+|.-+
T Consensus 39 ~~nqYVALWYkh-----G-------~Pv~GRaWn~~~G~v~~~ 69 (170)
T d2bjqa1 39 EMFQYVALWYEH-----G-------QPVFGRAYPDSADKTLAN 69 (170)
T ss_dssp EECCEEEEEEET-----T-------EEEEEEEEECTTSBEEEE
T ss_pred CCCCEEEEEECC-----C-------CCCEEEEECCCCCEEEEE
T ss_conf 833089871326-----9-------713212301799829999
No 17
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.84 E-value=11 Score=15.19 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=9.7
Q ss_pred CCCCCEEEEEECCCH
Q ss_conf 788875899735764
Q T0529 155 AGRDGVVRVWDVKNA 169 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~ 169 (569)
+..+|.|+|||....
T Consensus 25 ~~~~~~i~iw~~~~~ 39 (371)
T d1k8kc_ 25 CPNNHEVHIYEKSGN 39 (371)
T ss_dssp ECSSSEEEEEEEETT
T ss_pred EECCCEEEEEECCCC
T ss_conf 948898999988899
No 18
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.24 E-value=2.9 Score=19.53 Aligned_cols=16 Identities=19% Similarity=0.354 Sum_probs=12.2
Q ss_pred CCCCCEEEEEECCCHH
Q ss_conf 7888758997357646
Q T0529 155 AGRDGVVRVWDVKNAE 170 (569)
Q Consensus 155 ~~~~GvVrvWDvkd~s 170 (569)
+..+|.|||||+...+
T Consensus 29 ~s~Dg~v~iwd~~~~~ 44 (342)
T d1yfqa_ 29 TSWDGSLTVYKFDIQA 44 (342)
T ss_dssp EETTSEEEEEEEETTT
T ss_pred EECCCEEEEEECCCCC
T ss_conf 9799929999756998
No 19
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.96 E-value=16 Score=14.20 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCC
Q ss_conf 67888899999999861389986578604789896478887079986788850755100212126410011165540247
Q T0529 363 AGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ 442 (569)
Q Consensus 363 ~~Lt~~qe~~ik~~m~~Ldp~~tTWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKysHGillkDl~~aq 442 (569)
.|..++.-..-..+ = .+.-||..+-... |- + .+.--+||+-|.+..||-----|. ++|=+ +..-
T Consensus 28 ~Gv~~eeaaa~vAa---E-SSTGTWt~V~t~~-~~-----~---~~~~a~vy~i~~~~~~~~a~IAYP--~dLFE-eGsv 91 (126)
T d2d69a2 28 NGVSPEEAAGRIAS---E-SSIGTWTTLWKLP-EM-----A---KRSMAKVFYLEKHGEGYIAKIAYP--LTLFE-EGSL 91 (126)
T ss_dssp SSSCHHHHHHHHHH---H-TTTCCEEESSCCC-TT-----S---GGGCCEEEEEEEETTEEEEEEEEC--GGGSC-TTCH
T ss_pred CCCCHHHHHHHHHH---C-CCCCCCEEEEECC-CH-----H---CCCCCEEEEECCCCCEEEEEEECC--HHHCC-CCCH
T ss_conf 88898999888770---4-5667777831250-20-----1---133653888668886269999745--78667-5424
Q ss_pred CCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECHHHHHHH
Q ss_conf 5368999974586648981382899999984499622678643064788777
Q T0529 443 PGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKY 494 (569)
Q Consensus 443 PGL~S~vI~~LP~~MVlT~QGsDDIrkLld~hGRkDiKliDV~ls~eqsR~F 494 (569)
|.++|+|++++ |-|..-+-|++.|+++..+=.+.|
T Consensus 92 ~nlltsI~GNv-----------------fG~kav~aLRLeD~r~P~aylktF 126 (126)
T d2d69a2 92 VQLFSAVAGNV-----------------FGMKALKNLRLLDFHPPYEYLRHF 126 (126)
T ss_dssp HHHHHHHTTGG-----------------GGCTTEEEEEEEEEECCHHHHTTC
T ss_pred HHHHHHHHCCC-----------------CCHHHHHHHHHHHHCCCHHHHHCC
T ss_conf 56777751551-----------------330365430242404889997339
No 20
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=22.65 E-value=20 Score=13.34 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.9
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 72577767899999889999999752036
Q T0529 90 RVGTLTSDDLLILAADLEKLKSKVIRTER 118 (569)
Q Consensus 90 kvG~LskdeLm~LasDLeKLk~Kv~rtEr 118 (569)
.+|.|+-|++++.....++|.-|++..-+
T Consensus 20 ~~G~lT~d~~~~~eG~~eql~Gk~Q~~yG 48 (69)
T d1ryka_ 20 QWGKLTDDDMTIIEGKRDQLVGKIQERYG 48 (69)
T ss_dssp HTCSSCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98600388888966749999879999984
No 21
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.61 E-value=16 Score=14.08 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=12.4
Q ss_pred CCCCEEEEEECCCHHHHH
Q ss_conf 888758997357646776
Q T0529 156 GRDGVVRVWDVKNAELLN 173 (569)
Q Consensus 156 ~~~GvVrvWDvkd~sll~ 173 (569)
+.+|.|||||+.+..++.
T Consensus 80 g~d~~i~iW~~~~~~~~~ 97 (388)
T d1erja_ 80 GCNKTTQVYRVSDGSLVA 97 (388)
T ss_dssp ECBSCEEEEETTTCCEEE
T ss_pred EECCEEEEEEECCCCEEE
T ss_conf 949948999813640576
No 22
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=21.56 E-value=21 Score=13.18 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.9
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 72577767899999889999999752036
Q T0529 90 RVGTLTSDDLLILAADLEKLKSKVIRTER 118 (569)
Q Consensus 90 kvG~LskdeLm~LasDLeKLk~Kv~rtEr 118 (569)
.+|.|+-|++++.....|+|.-|++..-+
T Consensus 20 ~~G~lT~d~~~~~eG~~eql~Gk~Q~~yG 48 (69)
T d1ryka_ 20 QWGKLTDDDMTIIEGKRDQLVGKIQERYG 48 (69)
T ss_dssp HTCSSCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHCCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf 98404599789971069999999999853
No 23
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} SCOP: d1wdde2 d1ir2a2 d1gk8e2 d1ir2c2 d1gk8g2 d1gk8a2 d1uwar2 d1rxol2 d4ruba2 d8ruca2 d1ir1a2 d1ej7l2 d1ausl2 d1aa1l2 d3rubl2 d1rbla2 d1rsca2 d1bwva2 d1iwaa2 d1svda2 d1bxna2 d2d69e2 d2d69a2 d2cwxe2 d1geha2
Probab=21.42 E-value=19 Score=13.51 Aligned_cols=39 Identities=10% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHH
Q ss_conf 24753689999745866489813828999999844996226786430647887778
Q T0529 440 ATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYE 495 (569)
Q Consensus 440 ~aqPGL~S~vI~~LP~~MVlT~QGsDDIrkLld~hGRkDiKliDV~ls~eqsR~FE 495 (569)
..-|.|+|+|++++ |.|..=+-||+.|+.+..+=.|.|.
T Consensus 101 gsi~nlltsI~GNv-----------------FG~k~l~~lRL~Dl~~P~ay~k~F~ 139 (140)
T d1wdda2 101 GSVTNMFTSIVGNV-----------------FGFKALRALRLEDLRIPPTYSKTFQ 139 (140)
T ss_dssp TCHHHHHHHHHSSG-----------------GGBTTEEEEEEEEEECCHHHHTTSC
T ss_pred CCHHHHHHHHHHHC-----------------CCCCCCCCEEEEECCCCHHHHHHCC
T ss_conf 65788999986310-----------------3523346112564002668886178
No 24
>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
Probab=21.41 E-value=21 Score=13.16 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=24.7
Q ss_pred HHCCEEECCCCCEEEE------------EECHHHHHHHHHHHHHHHHHC
Q ss_conf 4140011066603567------------635212889999999988660
Q T0529 253 KAGACMLDGGNMLETI------------KVSPQTMDGILKSILKVKKAL 289 (569)
Q Consensus 253 KAGA~liDGGNMLETI------------kv~p~~f~~iiK~~L~vK~~e 289 (569)
.|.|+-+| |=|+||- .++++.|+.+++.+.++..-.
T Consensus 209 aaia~g~d-GlmIEsHp~P~~AlsD~~q~l~~~~l~~Ll~~l~~i~~~~ 256 (263)
T d2a21a1 209 AAVAVGCD-GVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVA 256 (263)
T ss_dssp HHHHHCCS-EEEEEEESSGGGCSSCTTTCEEGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99981999-8999947996547885445669999999999999999998
No 25
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=21.25 E-value=16 Score=14.20 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECHHHHHHH
Q ss_conf 475368999974586648981382899999984499622678643064788777
Q T0529 441 TQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKY 494 (569)
Q Consensus 441 aqPGL~S~vI~~LP~~MVlT~QGsDDIrkLld~hGRkDiKliDV~ls~eqsR~F 494 (569)
.-|+++|+|++++ |.|..-+-|++.|+++..+-.+.|
T Consensus 89 sv~nlltsi~GNv-----------------fG~kal~alRLeD~r~P~a~lk~F 125 (125)
T d1geha2 89 NLPGLLASIAGNI-----------------FGMKRVKGLRLEDLYFPEKLIREF 125 (125)
T ss_dssp CHHHHHHHHTSGG-----------------GGCTTEEECEEEEEECCHHHHTTC
T ss_pred CHHHHHHHHHCCC-----------------CCCCHHHCCEECCCCCCHHHHHCC
T ss_conf 0667777760630-----------------254211020310203898897329
No 26
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=20 Score=13.38 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=13.9
Q ss_pred CCCCCCCEEEEEECCCHHH
Q ss_conf 7778887589973576467
Q T0529 153 ARAGRDGVVRVWDVKNAEL 171 (569)
Q Consensus 153 ~~~~~~GvVrvWDvkd~sl 171 (569)
..+..+|.|||||+.+...
T Consensus 29 ~sgs~Dg~i~vWd~~~~~~ 47 (293)
T d1p22a2 29 VSGLRDNTIKIWDKNTLEC 47 (293)
T ss_dssp EEEESSSCEEEEESSSCCE
T ss_pred EEEECCCEEEEEECCCCCE
T ss_conf 9992899399999999919
No 27
>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}
Probab=20.48 E-value=22 Score=13.03 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCHHHHHHHCCCCH
Q ss_conf 887589973576467764206604
Q T0529 157 RDGVVRVWDVKNAELLNNQFGTMP 180 (569)
Q Consensus 157 ~~GvVrvWDvkd~sll~NQFGsmP 180 (569)
.+-|++.|+.-|..-+..|.|.+|
T Consensus 110 dGkI~e~~~~~D~~~~~~QLG~~p 133 (144)
T d2geya1 110 DGKVVEHWDVINMRPLLVRLGKLP 133 (144)
T ss_dssp TTEEEEEEEEEECHHHHHHTTSSC
T ss_pred CCEEEEEEEEECHHHHHHHCCCCC
T ss_conf 998999999617999998779999
No 28
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.34 E-value=15 Score=14.29 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=17.1
Q ss_pred CEEEEEEECCCCCEEEEEECCCCH
Q ss_conf 647888707998678885075510
Q T0529 397 PVEIALYQPSSGCYIHFFREPTDL 420 (569)
Q Consensus 397 PVElAiyQP~sg~YIHcyR~P~D~ 420 (569)
...+.+|..++|..++.++.+...
T Consensus 255 ~~~i~lwd~~~g~~~~~l~~~~~~ 278 (393)
T d1sq9a_ 255 FGCITLYETEFGERIGSLSVPTHS 278 (393)
T ss_dssp EEEEEEEETTTCCEEEEECBC---
T ss_pred CCEEEECCCCCCEEEEEECCCCCC
T ss_conf 421001035321344431156666
No 29
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=20.33 E-value=15 Score=14.37 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 6788889999999986138
Q T0529 363 AGLTYSQLMTLKDAMLQLD 381 (569)
Q Consensus 363 ~~Lt~~qe~~ik~~m~~Ld 381 (569)
..+|+.....+.+-+.+|+
T Consensus 9 ~~lt~al~~~i~~kl~kl~ 27 (112)
T d1l4sa_ 9 MEITPAIRQHVADRLAKLE 27 (112)
T ss_dssp SCCCHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 7569899999999999999
No 30
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI, C-terminal (catalytic) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=20.08 E-value=10 Score=15.57 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=10.3
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 78643064788777888899887788
Q T0529 481 LIDIALSKTDSRKYENAVWDQYKDLC 506 (569)
Q Consensus 481 liDV~ls~eqsR~FEd~VWd~f~~LC 506 (569)
++|+..-+-|+|.||-.|-+-|..-|
T Consensus 25 lidiA~~~k~~r~FE~~t~elf~~~~ 50 (193)
T d2foka4 25 LIEIARNSTQDRILEMKVMEFFMKVY 50 (193)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99998636620388999999999986
Done!