Query T0530 NP_391841.1, Bacillus subtilis, 115 residues
Match_columns 115
No_of_seqs 104 out of 166
Neff 6.2
Searched_HMMs 22458
Date Fri May 21 18:04:39 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0530.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0530.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5w_A Hypothetical cytosolic 99.9 6.7E-26 3E-30 170.4 9.1 84 30-114 5-106 (117)
2 2k5q_A Hypothetical membrane a 99.9 1.1E-25 5E-30 169.1 9.5 84 31-115 3-95 (105)
3 2a3m_A COG3005: nitrate/TMAO r 40.4 8.4 0.00037 17.8 1.4 15 1-15 1-15 (130)
4 3h9i_A Cation efflux system pr 34.0 6.6 0.00029 18.4 0.0 23 1-23 1-23 (407)
5 1y0g_A Protein YCEI; lipid bin 19.1 18 0.00081 15.8 0.0 18 1-18 1-18 (191)
6 1s5l_U Photosystem II 12 kDa e 16.2 23 0.001 15.2 0.0 22 1-22 1-22 (134)
7 1gyu_A Adapter-related protein 13.0 60 0.0027 12.8 4.0 32 71-102 99-132 (140)
8 3c12_A FLGD, flagellar protein 11.6 67 0.003 12.5 3.2 21 53-73 82-102 (138)
9 2wd6_A Agglutinin receptor; ce 11.6 67 0.003 12.5 1.3 16 57-72 176-191 (349)
10 1c8c_A DNA-binding protein 7A; 11.5 67 0.003 12.5 3.4 52 63-114 6-59 (64)
No 1
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=99.93 E-value=6.7e-26 Score=170.42 Aligned_cols=84 Identities=31% Similarity=0.539 Sum_probs=74.5
Q ss_pred CCCCCCCCCEEEEEECCCCCCC---CCCCEEEEEEEECCCCCEEEEEECCCC-----CCCCCCEEEEEECCC--------
Q ss_conf 3254328842589983887222---677437877537578856899970388-----776566389986582--------
Q T0530 30 RFNPFIHQQDVYVQIDRDGRHL---SPGGTEYTLDGYNASGKKEEVTFFAGK-----ELRKNAYLKVKAKGK-------- 93 (115)
Q Consensus 30 ~~np~~~~~~~Y~~i~~~g~~~---~~~~y~Y~l~~yd~~G~~k~i~f~~~~-----~L~~~aYlki~~k~~-------- 93 (115)
.+|+ ++++.|||||+++|+.. +.+.|.|+|+|||++|++++|+|+|++ +||++|||||+++++
T Consensus 5 ~~Nr-~Gkd~YYVqIt~~G~~~~~~~~~~y~YtL~gYDkdGkek~vtF~a~K~~~~~~Lr~~AYLkl~~k~~k~~~~~~~ 83 (117)
T 2k5w_A 5 SLNR-IGKDVYYMQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEIS 83 (117)
T ss_dssp CCCC-CCCSEEEEECCCCCCEEEETTEEEECEEEEEEETTCCEEEEEECCCTTCCSSCCCTTCEEEEEECCSSCSSCSCC
T ss_pred CCCC-CCCCEEEEEECCCCEEECCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 5565-788669999877865701478845898872177889999999960046766665659789999717557645565
Q ss_pred --EECCCEEECHHHCCHHHHHHC
Q ss_conf --311420331530356989962
Q T0530 94 --YVETWEEVKFEDMPDSVQSKL 114 (115)
Q Consensus 94 --~V~s~eeV~~~~iP~ka~~kL 114 (115)
.|+|||||+++|||++|++||
T Consensus 84 ~~~V~SwEEV~k~elP~KakeKL 106 (117)
T 2k5w_A 84 SIEVKSYEEIQKADLPEKVKDKF 106 (117)
T ss_dssp CCSEEEEEEECGGGSCHHHHHHH
T ss_pred CCCEEEHHEECHHHCCHHHHHHH
T ss_conf 55242431207657769999850
No 2
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=99.93 E-value=1.1e-25 Score=169.13 Aligned_cols=84 Identities=40% Similarity=0.712 Sum_probs=75.1
Q ss_pred CCCCCCCCEEEEEECCCCCCCCC--------CCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC-CEECCCEEE
Q ss_conf 25432884258998388722267--------743787753757885689997038877656638998658-231142033
Q T0530 31 FNPFIHQQDVYVQIDRDGRHLSP--------GGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKG-KYVETWEEV 101 (115)
Q Consensus 31 ~np~~~~~~~Y~~i~~~g~~~~~--------~~y~Y~l~~yd~~G~~k~i~f~~~~~L~~~aYlki~~k~-~~V~s~eeV 101 (115)
+|| +++++|||||+++|+.... .+|.|+|+|||++|++++|+|+++++||+||||||++++ ++|+|||||
T Consensus 3 ~Nr-~g~~~YYvqI~~~g~~~~~~~~~G~~~~~Y~Y~l~aYd~~Gkek~v~F~a~k~Lk~gaYLkl~~~~~~gV~s~EEV 81 (105)
T 2k5q_A 3 LNR-MGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEV 81 (105)
T ss_dssp CTT-CCCEEEEEECCCCCCEEGGGGTTTSSCCEEEEEEEEECSSCCEEEEEEEESSCCCTTSEEEEEEBTTTBCCCEEEE
T ss_pred CCC-CCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf 555-7995799999049838742047894566689888888799999998983488678897999998599747666897
Q ss_pred CHHHCCHHHHHHCC
Q ss_conf 15303569899629
Q T0530 102 KFEDMPDSVQSKLK 115 (115)
Q Consensus 102 ~~~~iP~ka~~kL~ 115 (115)
++++||++|++||.
T Consensus 82 ~~~evP~ka~eKL~ 95 (105)
T 2k5q_A 82 KKDELPAKVKEKLG 95 (105)
T ss_dssp CTTTSCTHHHHHSS
T ss_pred CHHHCCHHHHHHHH
T ss_conf 76789998999740
No 3
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=40.36 E-value=8.4 Score=17.81 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 935777899999999
Q T0530 1 MKKAMAILAVLAAAA 15 (115)
Q Consensus 1 MKK~l~ii~i~~v~~ 15 (115)
|||.+.+++++++++
T Consensus 1 m~k~l~~~~vl~~~~ 15 (130)
T 2a3m_A 1 MRKSLFAVMVLALVA 15 (130)
T ss_dssp ---------------
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 906899999999999
No 4
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=34.00 E-value=6.6 Score=18.41 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 93577789999999999887531
Q T0530 1 MKKAMAILAVLAAAAVICGLLFF 23 (115)
Q Consensus 1 MKK~l~ii~i~~v~~~~~~~~~~ 23 (115)
|||+..+++.++++.+++++.+.
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~ 23 (407)
T 3h9i_A 1 MKKIALIIGSMIAGGIISAAGFT 23 (407)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95279999999999999999887
No 5
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=19.08 E-value=18 Score=15.82 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 935777899999999998
Q T0530 1 MKKAMAILAVLAAAAVIC 18 (115)
Q Consensus 1 MKK~l~ii~i~~v~~~~~ 18 (115)
|||++..++++++++..+
T Consensus 1 Mkk~~l~l~l~al~~~~~ 18 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAG 18 (191)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 924699999999997632
No 6
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=16.22 E-value=23 Score=15.19 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9357778999999999988753
Q T0530 1 MKKAMAILAVLAAAAVICGLLF 22 (115)
Q Consensus 1 MKK~l~ii~i~~v~~~~~~~~~ 22 (115)
||++...++++.++++.|+++.
T Consensus 1 Mk~l~r~lai~~l~~~~~lg~~ 22 (134)
T 1s5l_U 1 MQRLGRWLALAYFVGVSLLGWI 22 (134)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9179999999999999999987
No 7
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=13.01 E-value=60 Score=12.78 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=12.4
Q ss_pred EEEECCCCCCCCCCEEEEE--ECCCEECCCEEEC
Q ss_conf 9997038877656638998--6582311420331
Q T0530 71 EVTFFAGKELRKNAYLKVK--AKGKYVETWEEVK 102 (115)
Q Consensus 71 ~i~f~~~~~L~~~aYlki~--~k~~~V~s~eeV~ 102 (115)
.|..-++++-++--=||+. ++|.-...-.+|.
T Consensus 99 ~i~van~qk~kpamrlKls~~~~G~~m~dmatv~ 132 (140)
T 1gyu_A 99 VIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVN 132 (140)
T ss_dssp EEEEECTTCCCCCEEEEEEEEETTEEEEEEEEEC
T ss_pred EEECCCCCCCCCCEEEEEEEEECCHHHHHHHHHC
T ss_conf 8970036667854799999974662444221231
No 8
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=11.62 E-value=67 Score=12.52 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=9.4
Q ss_pred CCCEEEEEEEECCCCCEEEEE
Q ss_conf 774378775375788568999
Q T0530 53 PGGTEYTLDGYNASGKKEEVT 73 (115)
Q Consensus 53 ~~~y~Y~l~~yd~~G~~k~i~ 73 (115)
.+.|.....+.|.+|+...+.
T Consensus 82 ~G~Y~v~v~a~~~~g~~~~~~ 102 (138)
T 3c12_A 82 AGKYGITATQTDTAGAKSKLA 102 (138)
T ss_dssp SEEEEEEEEEEETTCCEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEE
T ss_conf 976899999995899858762
No 9
>2wd6_A Agglutinin receptor; cell adhesion, calcium, binding, secreted, V-region, cell WALL, AG I/II protein, surface adhesin; 2.30A {Streptococcus gordonii}
Probab=11.59 E-value=67 Score=12.52 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=11.6
Q ss_pred EEEEEEECCCCCEEEE
Q ss_conf 7877537578856899
Q T0530 57 EYTLDGYNASGKKEEV 72 (115)
Q Consensus 57 ~Y~l~~yd~~G~~k~i 72 (115)
.=++.+|||+|++..+
T Consensus 176 ~~~~~FYDEdG~~I~~ 191 (349)
T 2wd6_A 176 NVKVKFYDEEGQLMNL 191 (349)
T ss_dssp EEEEEEECTTCCEECC
T ss_pred EEEEEEECCCCCCCCC
T ss_conf 9999998789989457
No 10
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=11.55 E-value=67 Score=12.51 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred ECCCCCEEEEEECC-CCCCCCCCEEEE-EECCCEECCCEEECHHHCCHHHHHHC
Q ss_conf 75788568999703-887765663899-86582311420331530356989962
Q T0530 63 YNASGKKEEVTFFA-GKELRKNAYLKV-KAKGKYVETWEEVKFEDMPDSVQSKL 114 (115)
Q Consensus 63 yd~~G~~k~i~f~~-~~~L~~~aYlki-~~k~~~V~s~eeV~~~~iP~ka~~kL 114 (115)
|.=.|+++++..+- .+--|-|.-+-. |-.|.+-++--.|++.|-|+..+.-|
T Consensus 6 fkykgeekevdiskikkvwrvgkmvsftyddgngktgrgavsekdapkell~ml 59 (64)
T 1c8c_A 6 FKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQML 59 (64)
T ss_dssp EECSSSEEEEEGGGEEEEEEETTEEEEEEECGGGCEEEEEEESTTCCHHHHHHH
T ss_pred EEECCCCEEECHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 886374003029998889702335899871699853665205553769999999
Done!