Query T0530 NP_391841.1, Bacillus subtilis, 115 residues
Match_columns 115
No_of_seqs 104 out of 166
Neff 6.2
Searched_HMMs 15564
Date Fri May 21 18:04:18 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0530.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0530.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2k5wa1 b.40.13.1 (A:2-109) Un 99.9 9.2E-26 5.9E-30 168.7 8.9 84 30-114 4-105 (108)
2 d2k5qa1 b.40.13.1 (A:2-97) Unc 99.9 4.7E-25 3E-29 164.6 9.4 81 35-115 5-94 (96)
3 d1jmma_ b.30.6.1 (A:) V-region 17.4 32 0.002 13.5 3.5 17 57-73 210-226 (377)
4 d1lqya_ d.167.1.1 (A:) Peptide 15.9 35 0.0022 13.3 2.8 20 57-76 126-145 (184)
5 d1hnfa1 b.1.1.1 (A:4-104) CD2, 13.5 40 0.0026 12.9 1.6 16 55-70 75-90 (101)
6 d1mbya_ d.223.1.1 (A:) Serine/ 13.1 35 0.0022 13.3 1.0 19 95-115 46-64 (75)
7 d1bf4a_ b.34.13.1 (A:) DNA-bin 12.9 42 0.0027 12.8 3.0 52 63-114 5-58 (63)
8 d1xeoa1 d.167.1.1 (A:1-164) Pe 12.1 45 0.0029 12.6 2.8 20 57-76 105-124 (164)
9 d1mbya_ d.223.1.1 (A:) Serine/ 12.0 39 0.0025 12.9 1.0 14 102-115 51-64 (75)
10 d1jmma_ b.30.6.1 (A:) V-region 11.9 45 0.0029 12.6 2.5 17 57-73 210-226 (377)
No 1
>d2k5wa1 b.40.13.1 (A:2-109) Uncharacterized protein BC2438 {Bacillus cereus [TaxId: 1396]}
Probab=99.92 E-value=9.2e-26 Score=168.69 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=74.4
Q ss_pred CCCCCCCCCEEEEEECCCCCCCC---CCCEEEEEEEECCCCCEEEEEECCCC-----CCCCCCEEEEEECCC--------
Q ss_conf 32543288425899838872226---77437877537578856899970388-----776566389986582--------
Q T0530 30 RFNPFIHQQDVYVQIDRDGRHLS---PGGTEYTLDGYNASGKKEEVTFFAGK-----ELRKNAYLKVKAKGK-------- 93 (115)
Q Consensus 30 ~~np~~~~~~~Y~~i~~~g~~~~---~~~y~Y~l~~yd~~G~~k~i~f~~~~-----~L~~~aYlki~~k~~-------- 93 (115)
.+|+ ++++.|||||+++|+... ...|.|+|+|||++|++++|+|++++ +||++|||||+++++
T Consensus 4 ~~nr-~gkd~YYVqIt~~G~~~~~~~~~~y~Y~l~ayDe~G~ek~v~F~a~K~~~~~~Lr~~AyLkly~k~~~g~~~~~~ 82 (108)
T d2k5wa1 4 SLNR-IGKDVYYMQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEIS 82 (108)
T ss_dssp CCCC-CCCSEEEEECCCCCCEEEETTEEEECEEEEEEETTCCEEEEEECCCTTCCSSCCCTTCEEEEEECCSSCSSCSCC
T ss_pred CCCC-CCCCEEEEEECCCCEEECCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 5455-788569999876855712468644898876466889889999983056656565658689999825557644455
Q ss_pred --EECCCEEECHHHCCHHHHHHC
Q ss_conf --311420331530356989962
Q T0530 94 --YVETWEEVKFEDMPDSVQSKL 114 (115)
Q Consensus 94 --~V~s~eeV~~~~iP~ka~~kL 114 (115)
.|+|||||+++|||++|++||
T Consensus 83 ~~~V~swEEV~k~elP~kakeKL 105 (108)
T d2k5wa1 83 SIEVKSYEEIQKADLPEKVKDKF 105 (108)
T ss_dssp CCSEEEEEEECGGGSCHHHHHHH
T ss_pred CCCCCEEEEECHHHCCHHHHHHH
T ss_conf 54323534646657569999864
No 2
>d2k5qa1 b.40.13.1 (A:2-97) Uncharacterized protein BC4932 {Bacillus cereus [TaxId: 1396]}
Probab=99.91 E-value=4.7e-25 Score=164.55 Aligned_cols=81 Identities=41% Similarity=0.718 Sum_probs=73.8
Q ss_pred CCCCEEEEEECCCCCCCCC--------CCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC-CEECCCEEECHHH
Q ss_conf 2884258998388722267--------743787753757885689997038877656638998658-2311420331530
Q T0530 35 IHQQDVYVQIDRDGRHLSP--------GGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKG-KYVETWEEVKFED 105 (115)
Q Consensus 35 ~~~~~~Y~~i~~~g~~~~~--------~~y~Y~l~~yd~~G~~k~i~f~~~~~L~~~aYlki~~k~-~~V~s~eeV~~~~ 105 (115)
+++++|||||+++|+.... .+|.|+|+|||++|++++|+|+++++||+||||||++++ ++|+|||||++++
T Consensus 5 ~g~~~YYvqI~~~g~~~~~~~~~g~~~~~Y~Y~l~ayde~G~ek~v~F~a~k~Lk~~ayLkl~~~~~~gV~s~eEV~~~e 84 (96)
T d2k5qa1 5 MGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDE 84 (96)
T ss_dssp CCCEEEEEECCCCCCEEGGGGTTTSSCCEEEEEEEEECSSCCEEEEEEEESSCCCTTSEEEEEEBTTTBCCCEEEECTTT
T ss_pred CCCCEEEEEECCCCEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEECHHH
T ss_conf 69856999992698286202578833344898888787899999999845886788969999985887587899977588
Q ss_pred CCHHHHHHCC
Q ss_conf 3569899629
Q T0530 106 MPDSVQSKLK 115 (115)
Q Consensus 106 iP~ka~~kL~ 115 (115)
||++|++||.
T Consensus 85 vP~ka~eKL~ 94 (96)
T d2k5qa1 85 LPAKVKEKLG 94 (96)
T ss_dssp SCTHHHHHSS
T ss_pred CCHHHHHHHC
T ss_conf 9998999757
No 3
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]}
Probab=17.42 E-value=32 Score=13.48 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=12.5
Q ss_pred EEEEEEECCCCCEEEEE
Q ss_conf 78775375788568999
Q T0530 57 EYTLDGYNASGKKEEVT 73 (115)
Q Consensus 57 ~Y~l~~yd~~G~~k~i~ 73 (115)
.=.++.|||+|++..++
T Consensus 210 ~~e~~FyDEdG~~I~~~ 226 (377)
T d1jmma_ 210 KNEFTFYDEDGKPINFD 226 (377)
T ss_dssp EEEEEEEETTSCBCCEE
T ss_pred EEEEEEECCCCCEEECC
T ss_conf 99999982789786136
No 4
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.92 E-value=35 Score=13.26 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCEEEEEECC
Q ss_conf 78775375788568999703
Q T0530 57 EYTLDGYNASGKKEEVTFFA 76 (115)
Q Consensus 57 ~Y~l~~yd~~G~~k~i~f~~ 76 (115)
.=++.++|.+|++.+.+|++
T Consensus 126 ~I~v~~~d~~G~~~~~~~~G 145 (184)
T d1lqya_ 126 RITVTGTTLDGEEVTLRLKG 145 (184)
T ss_dssp EEEEEEECTTSCEEEEEEEH
T ss_pred EEEEEEECCCCEEEEEEEEC
T ss_conf 25899981799799999961
No 5
>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.54 E-value=40 Score=12.87 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.0
Q ss_pred CEEEEEEEECCCCCEE
Q ss_conf 4378775375788568
Q T0530 55 GTEYTLDGYNASGKKE 70 (115)
Q Consensus 55 ~y~Y~l~~yd~~G~~k 70 (115)
.-.|+..+||++|+..
T Consensus 75 ~GtYkv~vYd~~Gk~v 90 (101)
T d1hnfa1 75 QDIYKVSIYDTKGKNV 90 (101)
T ss_dssp CEEEEEEEEETTSCEE
T ss_pred CCCEEEEEECCCCCEE
T ss_conf 8817999985899685
No 6
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.14 E-value=35 Score=13.27 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=12.9
Q ss_pred ECCCEEECHHHCCHHHHHHCC
Q ss_conf 114203315303569899629
Q T0530 95 VETWEEVKFEDMPDSVQSKLK 115 (115)
Q Consensus 95 V~s~eeV~~~~iP~ka~~kL~ 115 (115)
++.|.+ .+++|+-++|||.
T Consensus 46 ~t~yg~--nd~LP~~ireKL~ 64 (75)
T d1mbya_ 46 TTRYGE--NEKLPEYIKQKLQ 64 (75)
T ss_dssp EEEEET--TSCCCHHHHHHHT
T ss_pred EEEECC--CCCCCHHHHHHHH
T ss_conf 677156--5668768888764
No 7
>d1bf4a_ b.34.13.1 (A:) DNA-binding protein {Archaeon Sulfolobus solfataricus, Sso7d [TaxId: 2287]}
Probab=12.86 E-value=42 Score=12.75 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=37.5
Q ss_pred ECCCCCEEEEEECC-CCCCCCCCEEEE-EECCCEECCCEEECHHHCCHHHHHHC
Q ss_conf 75788568999703-887765663899-86582311420331530356989962
Q T0530 63 YNASGKKEEVTFFA-GKELRKNAYLKV-KAKGKYVETWEEVKFEDMPDSVQSKL 114 (115)
Q Consensus 63 yd~~G~~k~i~f~~-~~~L~~~aYlki-~~k~~~V~s~eeV~~~~iP~ka~~kL 114 (115)
|.=.|+++++..+- .+--|-|.-+-. |-.|.+-++--.|++.|-|+..+.-|
T Consensus 5 fkykgeekevd~skikkvwrvgkmvsftyd~g~gktgrgavsekdapkell~m~ 58 (63)
T d1bf4a_ 5 FKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQML 58 (63)
T ss_dssp EEETTEEEEEEGGGEEEEEEETTEEEEEEECGGGCEEEEEEETTTCCHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 775373002129998889702335899870699844655205553769999988
No 8
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli [TaxId: 562]}
Probab=12.13 E-value=45 Score=12.62 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.2
Q ss_pred EEEEEEECCCCCEEEEEECC
Q ss_conf 78775375788568999703
Q T0530 57 EYTLDGYNASGKKEEVTFFA 76 (115)
Q Consensus 57 ~Y~l~~yd~~G~~k~i~f~~ 76 (115)
.=++.++|.+|++.+.++++
T Consensus 105 ~I~v~y~d~~G~~~~~~~~g 124 (164)
T d1xeoa1 105 KVKIRALDRDGKPFELEADG 124 (164)
T ss_dssp EEEEEEECTTSCEEEEEECH
T ss_pred EEEEEEECCCCCEEEEEEEE
T ss_conf 78999986899899999954
No 9
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.97 E-value=39 Score=12.93 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.6
Q ss_pred CHHHCCHHHHHHCC
Q ss_conf 15303569899629
Q T0530 102 KFEDMPDSVQSKLK 115 (115)
Q Consensus 102 ~~~~iP~ka~~kL~ 115 (115)
+.+++|+-+++||.
T Consensus 51 ~~d~LP~~vreKL~ 64 (75)
T d1mbya_ 51 ENEKLPEYIKQKLQ 64 (75)
T ss_dssp TTSCCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHH
T ss_conf 65544399999986
No 10
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]}
Probab=11.92 E-value=45 Score=12.58 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=12.2
Q ss_pred EEEEEEECCCCCEEEEE
Q ss_conf 78775375788568999
Q T0530 57 EYTLDGYNASGKKEEVT 73 (115)
Q Consensus 57 ~Y~l~~yd~~G~~k~i~ 73 (115)
.=++..|||+|++..++
T Consensus 210 ~~~vkFYDe~G~~i~~~ 226 (377)
T d1jmma_ 210 KNEFTFYDEDGKPINFD 226 (377)
T ss_dssp EEEEEEEETTSCBCCEE
T ss_pred EEEEEEECCCCCEECCC
T ss_conf 99999997899892266
Done!