Query         T0531 JTB, Homo Sapiens, 65 residues
Match_columns 65
No_of_seqs    28 out of 30
Neff          3.1 
Searched_HMMs 22458
Date          Fri May 21 18:04:37 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0531.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0531.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2dsr_G Insulin-like growth fac  18.7      38  0.0017   15.0   1.5   18   32-49     30-47  (82)
  2 2ewl_A Protein E7; HPV, oncopr  18.4      46  0.0021   14.5   1.9   21    1-26      1-21  (56)
  3 1v8h_A Sulfur oxidation protei  16.2      58  0.0026   14.0   3.1   32   25-56     31-62  (107)
  4 1n8m_A PI4, potassium channel   14.5     8.3 0.00037   18.5  -2.7   17   41-58      1-17  (38)
  5 2dsq_G Insulin-like growth fac  12.9      64  0.0029   13.8   1.5   18   32-49     38-55  (94)
  6 1p1p_A AA-conotoxin PIVA; neur  12.9      42  0.0018   14.8   0.5   10   19-28      9-18  (26)
  7 1rmj_A Insulin-like growth fac  10.3      56  0.0025   14.1   0.5   20   31-50     53-72  (107)
  8 2oxg_Z SOXZ protein; immunoglo   9.2      98  0.0044   12.8   3.1   35   22-56     28-63  (108)
  9 1zt3_A Insulin-like growth fac   9.0      81  0.0036   13.2   0.9   19   31-49     31-49  (80)
 10 1ju8_A Leginsulin, albumin 1;    8.2      78  0.0035   13.3   0.5   18   23-40      6-27  (37)

No 1  
>2dsr_G Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.10A {Homo sapiens} SCOP: g.28.1.1
Probab=18.67  E-value=38  Score=15.00  Aligned_cols=18  Identities=22%  Similarity=0.647  Sum_probs=16.5

Q ss_pred             CCCCCCCCCEEEEEECCC
Q ss_conf             123235674446764568
Q T0531            32 TPECGPTGYVEKITCSSS   49 (65)
Q Consensus        32 ~~~C~~Tgy~E~i~C~~S   49 (65)
                      ||.|...|+.+.+.|..|
T Consensus        30 IP~C~~~G~y~~~QC~~s   47 (82)
T 2dsr_G           30 IPNCDRNGNFHPKQCHPA   47 (82)
T ss_dssp             CCCBCTTSSBCSEEECCC
T ss_pred             CCCCCCCCCEEEEEEECC
T ss_conf             877799998805776504


No 2  
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus/viral protein complex; NMR {Human papillomavirus type 45} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=18.39  E-value=46  Score=14.52  Aligned_cols=21  Identities=29%  Similarity=0.505  Sum_probs=16.6

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             98755585545676157226877764
Q T0531             1 GSGMKEFPCWLVEEFVVAEECSPCSN   26 (65)
Q Consensus         1 ~~~~~~~~CW~~E~f~V~~eC~pCs~   26 (65)
                      |+-++|.     ..|-|+..|..|+.
T Consensus         1 ~~~~~Ep-----q~YrIvt~C~~C~~   21 (56)
T 2ewl_A            1 GSHMAEP-----QRHKILCVCCKCDG   21 (56)
T ss_dssp             CCCCCCS-----SEEEEEEEBTTTCC
T ss_pred             CCCCCCC-----CCCEEEEECCCCCC
T ss_conf             9865676-----58789858888999


No 3  
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=16.20  E-value=58  Score=14.00  Aligned_cols=32  Identities=9%  Similarity=0.115  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf             64442131232356744467645688334403
Q T0531            25 SNFRAKTTPECGPTGYVEKITCSSSKRNEFKS   56 (65)
Q Consensus        25 s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kS   56 (65)
                      +.|+..-.+.=++.+|++.|.+.-.|+.++.-
T Consensus        31 TGl~~D~~g~~IPa~~I~~v~v~~ng~~v~~~   62 (107)
T 1v8h_A           31 PGTRRDAEGKLIPAKYINLVEVYFEGEKVAEA   62 (107)
T ss_dssp             CSCCBCTTSCBCCCBCEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHEEEEEEEECCEEEEEE
T ss_conf             22024888899157813899999999999999


No 4  
>1n8m_A PI4, potassium channel blocking toxin 4; potassium channel blocker, disulfide bridge stabilized alpha beta motif; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1v56_A 1txm_A
Probab=14.49  E-value=8.3  Score=18.47  Aligned_cols=17  Identities=29%  Similarity=0.935  Sum_probs=11.9

Q ss_pred             EEEEEECCCCCEEEECCC
Q ss_conf             446764568833440388
Q T0531            41 VEKITCSSSKRNEFKSCR   58 (65)
Q Consensus        41 ~E~i~C~~S~~~~~kSCr   58 (65)
                      +|.|+|+.|+ +-|++|+
T Consensus         1 ~e~irC~gsk-dCy~PC~   17 (38)
T 1n8m_A            1 IEAIRCGGSR-DCYRPCQ   17 (38)
T ss_dssp             CCCCBCSSTH-HHHHHHH
T ss_pred             CCEEEECCCC-HHCCHHH
T ss_conf             9258864850-2144377


No 5  
>2dsq_G Insulin-like growth factor-binding protein 1; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.80A {Homo sapiens} SCOP: g.28.1.1
Probab=12.93  E-value=64  Score=13.76  Aligned_cols=18  Identities=28%  Similarity=0.798  Sum_probs=16.3

Q ss_pred             CCCCCCCCCEEEEEECCC
Q ss_conf             123235674446764568
Q T0531            32 TPECGPTGYVEKITCSSS   49 (65)
Q Consensus        32 ~~~C~~Tgy~E~i~C~~S   49 (65)
                      ||.|-..|+.+.+.|-.|
T Consensus        38 iP~C~~dG~y~~~QC~~s   55 (94)
T 2dsq_G           38 LPNCNKNGFYHSRQCETS   55 (94)
T ss_dssp             CCCBCTTSSBCSEEECBC
T ss_pred             CCCCCCCCCEEEEEEECC
T ss_conf             877699998816776526


No 6  
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=12.87  E-value=42  Score=14.76  Aligned_cols=10  Identities=40%  Similarity=0.906  Sum_probs=6.5

Q ss_pred             CCCCCCCCCC
Q ss_conf             2687776444
Q T0531            19 EECSPCSNFR   28 (65)
Q Consensus        19 ~eC~pCs~Fe   28 (65)
                      .-|||||--+
T Consensus         9 aachpcsckd   18 (26)
T 1p1p_A            9 AACHPCSCKD   18 (26)
T ss_dssp             SSCCTTTSTT
T ss_pred             CCCCCCCCCC
T ss_conf             4535554567


No 7  
>1rmj_A Insulin-like growth factor binding protein 6; hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.28.1.1
Probab=10.25  E-value=56  Score=14.08  Aligned_cols=20  Identities=35%  Similarity=0.765  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCEEEEEECCCC
Q ss_conf             31232356744467645688
Q T0531            31 TTPECGPTGYVEKITCSSSK   50 (65)
Q Consensus        31 s~~~C~~Tgy~E~i~C~~S~   50 (65)
                      =||.|-..|+.+.+.|..|.
T Consensus        53 yiP~Cd~dG~Y~~~QC~~s~   72 (107)
T 1rmj_A           53 YVPNCDHRGFYRKRQCRSSQ   72 (107)
T ss_dssp             EEECCCTTSSCCSEEEEEES
T ss_pred             CCCCCCCCCCEECEECCCCC
T ss_conf             98676999999020157788


No 8  
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=9.19  E-value=98  Score=12.79  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=24.4

Q ss_pred             CCC-CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf             777-64442131232356744467645688334403
Q T0531            22 SPC-SNFRAKTTPECGPTGYVEKITCSSSKRNEFKS   56 (65)
Q Consensus        22 ~pC-s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kS   56 (65)
                      ||= ++++..-.+.=++.+|++.+.|.--|+.+++-
T Consensus        28 HPMeTGlr~d~~g~~IPa~~I~~~~v~~ng~~v~~~   63 (108)
T 2oxg_Z           28 HKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDV   63 (108)
T ss_dssp             CCCBCSCCBCTTSCBCCCBCEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHEEEEEEEECCEEEEEE
T ss_conf             888533331877899436803899999999999999


No 9  
>1zt3_A Insulin-like growth factor binding protein 1; IGFBP-1, amniotic fluid, C-terminal domain, metal-binding, peptide binding protein; 1.80A {Homo sapiens} PDB: 1zt5_A
Probab=9.04  E-value=81  Score=13.22  Aligned_cols=19  Identities=26%  Similarity=0.723  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCEEEEEECCC
Q ss_conf             3123235674446764568
Q T0531            31 TTPECGPTGYVEKITCSSS   49 (65)
Q Consensus        31 s~~~C~~Tgy~E~i~C~~S   49 (65)
                      -||.|...|+.+.+.|-.|
T Consensus        31 yiP~C~~dG~y~~~QC~~s   49 (80)
T 1zt3_A           31 YLPNCNKNGFYHSRQCETS   49 (80)
T ss_dssp             CCCCBCTTSSBCSEEECEE
T ss_pred             CCCCCCCCCCEEEEEEECC
T ss_conf             8878799998721661036


No 10 
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=8.20  E-value=78  Score=13.32  Aligned_cols=18  Identities=33%  Similarity=0.853  Sum_probs=10.2

Q ss_pred             CCCCCCC---CCCC-CCCCCCC
Q ss_conf             7764442---1312-3235674
Q T0531            23 PCSNFRA---KTTP-ECGPTGY   40 (65)
Q Consensus        23 pCs~Fei---ks~~-~C~~Tgy   40 (65)
                      -||.||+   .|.+ -|++-|.
T Consensus         6 ~CspFemPpc~s~dCRCiP~gL   27 (37)
T 1ju8_A            6 ACSPFEVPPCRSRDCRCVPIGL   27 (37)
T ss_dssp             EECSSSSSSSSCTTSEEEECSS
T ss_pred             CCCCCCCCCCCCCCCEEEEEEE
T ss_conf             2366636988998726787577


Done!