Query T0531 JTB, Homo Sapiens, 65 residues
Match_columns 65
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 22458
Date Fri May 21 18:04:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0531.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0531.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dsr_G Insulin-like growth fac 18.7 38 0.0017 15.0 1.5 18 32-49 30-47 (82)
2 2ewl_A Protein E7; HPV, oncopr 18.4 46 0.0021 14.5 1.9 21 1-26 1-21 (56)
3 1v8h_A Sulfur oxidation protei 16.2 58 0.0026 14.0 3.1 32 25-56 31-62 (107)
4 1n8m_A PI4, potassium channel 14.5 8.3 0.00037 18.5 -2.7 17 41-58 1-17 (38)
5 2dsq_G Insulin-like growth fac 12.9 64 0.0029 13.8 1.5 18 32-49 38-55 (94)
6 1p1p_A AA-conotoxin PIVA; neur 12.9 42 0.0018 14.8 0.5 10 19-28 9-18 (26)
7 1rmj_A Insulin-like growth fac 10.3 56 0.0025 14.1 0.5 20 31-50 53-72 (107)
8 2oxg_Z SOXZ protein; immunoglo 9.2 98 0.0044 12.8 3.1 35 22-56 28-63 (108)
9 1zt3_A Insulin-like growth fac 9.0 81 0.0036 13.2 0.9 19 31-49 31-49 (80)
10 1ju8_A Leginsulin, albumin 1; 8.2 78 0.0035 13.3 0.5 18 23-40 6-27 (37)
No 1
>2dsr_G Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.10A {Homo sapiens} SCOP: g.28.1.1
Probab=18.67 E-value=38 Score=15.00 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=16.5
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 123235674446764568
Q T0531 32 TPECGPTGYVEKITCSSS 49 (65)
Q Consensus 32 ~~~C~~Tgy~E~i~C~~S 49 (65)
||.|...|+.+.+.|..|
T Consensus 30 IP~C~~~G~y~~~QC~~s 47 (82)
T 2dsr_G 30 IPNCDRNGNFHPKQCHPA 47 (82)
T ss_dssp CCCBCTTSSBCSEEECCC
T ss_pred CCCCCCCCCEEEEEEECC
T ss_conf 877799998805776504
No 2
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus/viral protein complex; NMR {Human papillomavirus type 45} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=18.39 E-value=46 Score=14.52 Aligned_cols=21 Identities=29% Similarity=0.505 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 98755585545676157226877764
Q T0531 1 GSGMKEFPCWLVEEFVVAEECSPCSN 26 (65)
Q Consensus 1 ~~~~~~~~CW~~E~f~V~~eC~pCs~ 26 (65)
|+-++|. ..|-|+..|..|+.
T Consensus 1 ~~~~~Ep-----q~YrIvt~C~~C~~ 21 (56)
T 2ewl_A 1 GSHMAEP-----QRHKILCVCCKCDG 21 (56)
T ss_dssp CCCCCCS-----SEEEEEEEBTTTCC
T ss_pred CCCCCCC-----CCCEEEEECCCCCC
T ss_conf 9865676-----58789858888999
No 3
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=16.20 E-value=58 Score=14.00 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf 64442131232356744467645688334403
Q T0531 25 SNFRAKTTPECGPTGYVEKITCSSSKRNEFKS 56 (65)
Q Consensus 25 s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kS 56 (65)
+.|+..-.+.=++.+|++.|.+.-.|+.++.-
T Consensus 31 TGl~~D~~g~~IPa~~I~~v~v~~ng~~v~~~ 62 (107)
T 1v8h_A 31 PGTRRDAEGKLIPAKYINLVEVYFEGEKVAEA 62 (107)
T ss_dssp CSCCBCTTSCBCCCBCEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCCCHHHEEEEEEEECCEEEEEE
T ss_conf 22024888899157813899999999999999
No 4
>1n8m_A PI4, potassium channel blocking toxin 4; potassium channel blocker, disulfide bridge stabilized alpha beta motif; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1v56_A 1txm_A
Probab=14.49 E-value=8.3 Score=18.47 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=11.9
Q ss_pred EEEEEECCCCCEEEECCC
Q ss_conf 446764568833440388
Q T0531 41 VEKITCSSSKRNEFKSCR 58 (65)
Q Consensus 41 ~E~i~C~~S~~~~~kSCr 58 (65)
+|.|+|+.|+ +-|++|+
T Consensus 1 ~e~irC~gsk-dCy~PC~ 17 (38)
T 1n8m_A 1 IEAIRCGGSR-DCYRPCQ 17 (38)
T ss_dssp CCCCBCSSTH-HHHHHHH
T ss_pred CCEEEECCCC-HHCCHHH
T ss_conf 9258864850-2144377
No 5
>2dsq_G Insulin-like growth factor-binding protein 1; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.80A {Homo sapiens} SCOP: g.28.1.1
Probab=12.93 E-value=64 Score=13.76 Aligned_cols=18 Identities=28% Similarity=0.798 Sum_probs=16.3
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 123235674446764568
Q T0531 32 TPECGPTGYVEKITCSSS 49 (65)
Q Consensus 32 ~~~C~~Tgy~E~i~C~~S 49 (65)
||.|-..|+.+.+.|-.|
T Consensus 38 iP~C~~dG~y~~~QC~~s 55 (94)
T 2dsq_G 38 LPNCNKNGFYHSRQCETS 55 (94)
T ss_dssp CCCBCTTSSBCSEEECBC
T ss_pred CCCCCCCCCEEEEEEECC
T ss_conf 877699998816776526
No 6
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=12.87 E-value=42 Score=14.76 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q ss_conf 2687776444
Q T0531 19 EECSPCSNFR 28 (65)
Q Consensus 19 ~eC~pCs~Fe 28 (65)
.-|||||--+
T Consensus 9 aachpcsckd 18 (26)
T 1p1p_A 9 AACHPCSCKD 18 (26)
T ss_dssp SSCCTTTSTT
T ss_pred CCCCCCCCCC
T ss_conf 4535554567
No 7
>1rmj_A Insulin-like growth factor binding protein 6; hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.28.1.1
Probab=10.25 E-value=56 Score=14.08 Aligned_cols=20 Identities=35% Similarity=0.765 Sum_probs=16.8
Q ss_pred CCCCCCCCCCEEEEEECCCC
Q ss_conf 31232356744467645688
Q T0531 31 TTPECGPTGYVEKITCSSSK 50 (65)
Q Consensus 31 s~~~C~~Tgy~E~i~C~~S~ 50 (65)
=||.|-..|+.+.+.|..|.
T Consensus 53 yiP~Cd~dG~Y~~~QC~~s~ 72 (107)
T 1rmj_A 53 YVPNCDHRGFYRKRQCRSSQ 72 (107)
T ss_dssp EEECCCTTSSCCSEEEEEES
T ss_pred CCCCCCCCCCEECEECCCCC
T ss_conf 98676999999020157788
No 8
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=9.19 E-value=98 Score=12.79 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCC-CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf 777-64442131232356744467645688334403
Q T0531 22 SPC-SNFRAKTTPECGPTGYVEKITCSSSKRNEFKS 56 (65)
Q Consensus 22 ~pC-s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kS 56 (65)
||= ++++..-.+.=++.+|++.+.|.--|+.+++-
T Consensus 28 HPMeTGlr~d~~g~~IPa~~I~~~~v~~ng~~v~~~ 63 (108)
T 2oxg_Z 28 HKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDV 63 (108)
T ss_dssp CCCBCSCCBCTTSCBCCCBCEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHEEEEEEEECCEEEEEE
T ss_conf 888533331877899436803899999999999999
No 9
>1zt3_A Insulin-like growth factor binding protein 1; IGFBP-1, amniotic fluid, C-terminal domain, metal-binding, peptide binding protein; 1.80A {Homo sapiens} PDB: 1zt5_A
Probab=9.04 E-value=81 Score=13.22 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=16.4
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 3123235674446764568
Q T0531 31 TTPECGPTGYVEKITCSSS 49 (65)
Q Consensus 31 s~~~C~~Tgy~E~i~C~~S 49 (65)
-||.|...|+.+.+.|-.|
T Consensus 31 yiP~C~~dG~y~~~QC~~s 49 (80)
T 1zt3_A 31 YLPNCNKNGFYHSRQCETS 49 (80)
T ss_dssp CCCCBCTTSSBCSEEECEE
T ss_pred CCCCCCCCCCEEEEEEECC
T ss_conf 8878799998721661036
No 10
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=8.20 E-value=78 Score=13.32 Aligned_cols=18 Identities=33% Similarity=0.853 Sum_probs=10.2
Q ss_pred CCCCCCC---CCCC-CCCCCCC
Q ss_conf 7764442---1312-3235674
Q T0531 23 PCSNFRA---KTTP-ECGPTGY 40 (65)
Q Consensus 23 pCs~Fei---ks~~-~C~~Tgy 40 (65)
-||.||+ .|.+ -|++-|.
T Consensus 6 ~CspFemPpc~s~dCRCiP~gL 27 (37)
T 1ju8_A 6 ACSPFEVPPCRSRDCRCVPIGL 27 (37)
T ss_dssp EECSSSSSSSSCTTSEEEECSS
T ss_pred CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 2366636988998726787577
Done!