Query T0531 JTB, Homo Sapiens, 65 residues
Match_columns 65
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 11830
Date Fri May 21 18:06:25 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0531.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0531.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05439 JTB: Jumping transloc 100.0 4.9E-30 4.1E-34 177.1 3.5 60 6-65 16-75 (114)
2 PF12284 HoxA13_N: Hox protein 12.5 31 0.0026 14.0 1.2 40 17-57 50-92 (117)
3 PF08770 SoxZ: Sulphur oxidati 11.1 44 0.0037 13.2 2.1 31 25-55 27-57 (100)
4 PF00086 Thyroglobulin_1: Thyr 7.9 45 0.0038 13.1 0.6 17 32-48 25-41 (68)
5 PF02713 DUF220: Domain of unk 7.2 37 0.0031 13.6 -0.1 26 8-34 35-60 (74)
6 PF11648 RIG-I_C-RD: C-termina 7.1 52 0.0044 12.8 0.7 15 6-20 80-94 (123)
7 PF03002 Somatostatin: Somatos 6.8 51 0.0043 12.8 0.5 15 21-35 4-18 (18)
8 PF03473 MOSC: MOSC domain; I 5.8 73 0.0061 12.0 0.8 16 14-29 74-89 (133)
9 PF12548 DUF3740: Sulfatase pr 5.3 47 0.004 13.0 -0.4 25 29-57 74-98 (142)
10 PF06134 RhaA: L-rhamnose isom 5.2 55 0.0047 12.6 -0.1 10 6-15 34-43 (417)
No 1
>PF05439 JTB: Jumping translocation breakpoint protein (JTB); InterPro: IPR008657 This family contains several jumping translocation breakpoint proteins or JTBs. Jumping translocation (JT) is an unbalanced translocation that comprises amplified chromosomal segments jumping to various telomeres. JTB, located at 1q21, has been found to fuse with the telomeric repeats of acceptor telomeres in a case of JT. hJTB (Homo sapiens JTB) encodes a transmembrane protein that is highly conserved among divergent eukaryotic species. JT results in a hJTB truncation, which potentially produces an hJTB product devoid of the transmembrane domain. hJTB is located in a gene-rich region at 1q21, called EDC (Epidermal Differentiation Complex) . JTB has also been implicated in prostatic carcinomas .; GO: 0016021 integral to membrane
Probab=99.95 E-value=4.9e-30 Score=177.14 Aligned_cols=60 Identities=53% Similarity=1.020 Sum_probs=57.6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 585545676157226877764442131232356744467645688334403886523369
Q T0531 6 EFPCWLVEEFVVAEECSPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQR 65 (65)
Q Consensus 6 ~~~CW~~E~f~V~~eC~pCs~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kSCrsa~~eer 65 (65)
-.|||++|+|+|++||+||++|||||+++|++|||+|+|||++|++++||||||+|||+|
T Consensus 16 ~~~CW~~E~f~Vv~eC~pCs~Feiks~~~C~~Tgy~E~v~C~~s~~~~~kSCr~~~~ee~ 75 (114)
T PF05439_consen 16 NSTCWQHEEFVVVQECHPCSEFEIKSIGVCGHTGYKEVVNCKSSEIKVYKSCRSAWMEER 75 (114)
T ss_pred CCCHHCCCCEEEEEECCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECCCHHHHHH
T ss_conf 852014545799752344733320012356556757888525677535750677677641
No 2
>PF12284 HoxA13_N: Hox protein A13 N terminal
Probab=12.48 E-value=31 Score=13.97 Aligned_cols=40 Identities=33% Similarity=0.721 Sum_probs=24.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEE--EEECCCCC-EEEECC
Q ss_conf 722687776444213123235674446--76456883-344038
Q T0531 17 VAEECSPCSNFRAKTTPECGPTGYVEK--ITCSSSKR-NEFKSC 57 (65)
Q Consensus 17 V~~eC~pCs~Feiks~~~C~~Tgy~E~--i~C~~S~~-~~~kSC 57 (65)
-.++|.||++-|.-+ .+=++-||+-- --|.-|.- ...|||
T Consensus 50 ~~kQCspc~A~q~Ss-~aaLpYGYFG~gYY~CRmsh~~~~lKsc 92 (117)
T PF12284_consen 50 PGKQCSPCPAPQSSS-SAALPYGYFGSGYYPCRMSHHHNSLKSC 92 (117)
T ss_pred CHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 010148886667888-8776633037874363214543444445
No 3
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit . ; PDB: 2ox5_Z 2oxh_E 2oxg_E 1v8h_A.
Probab=11.10 E-value=44 Score=13.18 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 6444213123235674446764568833440
Q T0531 25 SNFRAKTTPECGPTGYVEKITCSSSKRNEFK 55 (65)
Q Consensus 25 s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~k 55 (65)
|.++..-.+.=++.+|++.+.+.--|+.++.
T Consensus 27 tGlrkd~tg~~iPa~~I~~~~~~~ng~~v~~ 57 (100)
T PF08770_consen 27 TGLRKDQTGKLIPAHYIEEVEVTYNGKPVFS 57 (100)
T ss_dssp ---BB-----BB--B-EEEEEEEE---EEEE
T ss_pred CCCCCCCCCCCCCHHHEEEEEEEECCEEEEE
T ss_conf 4341177888977585589999999999999
No 4
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat , . Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain ; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 ; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) ; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin ; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) . The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined , . ; PDB: 2h7t_A 2dsr_G 2dsq_H 1zt5_A 1zt3_A 1rmj_A 1l3h_A 1icf_I.
Probab=7.87 E-value=45 Score=13.09 Aligned_cols=17 Identities=29% Similarity=0.808 Sum_probs=15.4
Q ss_pred CCCCCCCCCEEEEEECC
Q ss_conf 12323567444676456
Q T0531 32 TPECGPTGYVEKITCSS 48 (65)
Q Consensus 32 ~~~C~~Tgy~E~i~C~~ 48 (65)
+|.|-..|+.+.+.|..
T Consensus 25 iP~C~~~G~y~~~QC~~ 41 (68)
T PF00086_consen 25 IPQCDEDGSYEPVQCHG 41 (68)
T ss_dssp EE-B-----B-SEEEEE
T ss_pred CCCCCCCCCEEEEEEEC
T ss_conf 87639999983378853
No 5
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=7.24 E-value=37 Score=13.56 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=17.5
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 554567615722687776444213123
Q T0531 8 PCWLVEEFVVAEECSPCSNFRAKTTPE 34 (65)
Q Consensus 8 ~CW~~E~f~V~~eC~pCs~Feiks~~~ 34 (65)
-||+.|+.-|-.| +.|..+.-||..+
T Consensus 35 G~wkVEPlyVD~e-r~C~~~~pks~ee 60 (74)
T PF02713_consen 35 GSWKVEPLYVDQE-RLCKPRKPKSREE 60 (74)
T ss_pred CEEEEEEEEECHH-HHHCCCCCCCHHH
T ss_conf 4266677786356-7517689999899
No 6
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; PDB: 2rmj_A 2qfd_C 2qfb_G 3ga3_A 3eqt_A 2w4r_B.
Probab=7.10 E-value=52 Score=12.77 Aligned_cols=15 Identities=47% Similarity=1.015 Sum_probs=7.2
Q ss_pred CCCCCCCCCEEEECC
Q ss_conf 585545676157226
Q T0531 6 EFPCWLVEEFVVAEE 20 (65)
Q Consensus 6 ~~~CW~~E~f~V~~e 20 (65)
+|||...+.|+++.|
T Consensus 80 ~lP~L~iksfv~~~e 94 (123)
T PF11648_consen 80 ELPCLKIKSFVVIDE 94 (123)
T ss_dssp EEEBB-GGGEEEEEC
T ss_pred CCCEEEHHHEEEEEC
T ss_conf 251556425576402
No 7
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR004250 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties .; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=6.76 E-value=51 Score=12.80 Aligned_cols=15 Identities=47% Similarity=0.817 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 877764442131232
Q T0531 21 CSPCSNFRAKTTPEC 35 (65)
Q Consensus 21 C~pCs~Feiks~~~C 35 (65)
=.||.+|=-|+...|
T Consensus 4 k~~CknffWKtftsC 18 (18)
T PF03002_consen 4 KAPCKNFFWKTFTSC 18 (18)
T ss_pred CCCCCEEEECCCCCC
T ss_conf 444300241143469
No 8
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants ; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism . This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase. MOSC domains are found in several proteins from both eukaryotes and prokaryotes, and have a highly conserved cysteine residue required for activity. MOSC domains are found as stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, using it for the formation of diverse sulphur-metal clusters .; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1oru_A 1o65_C 1o67_A.
Probab=5.80 E-value=73 Score=12.00 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.2
Q ss_pred CEEEECCCCCCCCCCC
Q ss_conf 6157226877764442
Q T0531 14 EFVVAEECSPCSNFRA 29 (65)
Q Consensus 14 ~f~V~~eC~pCs~Fei 29 (65)
.|+|++.|.||....+
T Consensus 74 ~l~v~~~~~rC~~~~~ 89 (133)
T PF03473_consen 74 VLEVTEPCERCVMPNV 89 (133)
T ss_dssp EEEEEE-----THHHH
T ss_pred EEEEEECCCCCCCCCE
T ss_conf 9999956068885415
No 9
>PF12548 DUF3740: Sulfatase protein
Probab=5.34 E-value=47 Score=13.00 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEECC
Q ss_conf 21312323567444676456883344038
Q T0531 29 AKTTPECGPTGYVEKITCSSSKRNEFKSC 57 (65)
Q Consensus 29 iks~~~C~~Tgy~E~i~C~~S~~~~~kSC 57 (65)
|+++.-|--.-+ ..|+|. + ..|+|=
T Consensus 74 iqvT~rCfIl~n-dtV~C~--~-~iY~s~ 98 (142)
T PF12548_consen 74 IQVTHRCFILAN-DTVNCS--N-VIYESE 98 (142)
T ss_pred HCCEEEEEEECC-CCEEEC--H-HHHHHH
T ss_conf 220013788138-856402--5-678768
No 10
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1de6_A 1de5_D 1d8w_D.
Probab=5.21 E-value=55 Score=12.64 Aligned_cols=10 Identities=20% Similarity=0.900 Sum_probs=7.3
Q ss_pred CCCCCCCCCE
Q ss_conf 5855456761
Q T0531 6 EFPCWLVEEF 15 (65)
Q Consensus 6 ~~~CW~~E~f 15 (65)
-+||||...-
T Consensus 34 S~hcWQgDDv 43 (417)
T PF06134_consen 34 SMHCWQGDDV 43 (417)
T ss_dssp EEETT---TT
T ss_pred EEECCCCCCC
T ss_conf 1112465754
Done!