Query T0531 JTB, Homo Sapiens, 65 residues
Match_columns 65
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 15564
Date Fri May 21 18:03:57 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0531.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0531.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dsrg1 g.28.1.1 (G:151-229) I 14.7 37 0.0024 14.2 1.5 19 31-49 29-47 (79)
2 d1n8ma_ g.3.7.2 (A:) PI4, pota 14.5 5.7 0.00037 18.5 -2.7 17 41-58 1-17 (38)
3 d1icfi_ g.28.1.1 (I:) Class II 13.3 42 0.0027 13.9 1.5 19 31-49 19-37 (65)
4 d1v8ha1 b.1.18.19 (A:2-107) Su 12.4 52 0.0033 13.4 3.1 33 25-57 31-63 (106)
5 d2dsqg1 g.28.1.1 (G:149-231) I 11.2 54 0.0035 13.3 1.5 18 32-49 30-47 (83)
6 d1a7ia1 g.39.1.3 (A:8-35) Cyst 11.1 57 0.0037 13.2 2.0 23 33-57 4-27 (28)
7 d1rmja_ g.28.1.1 (A:) Insulin- 10.5 37 0.0024 14.2 0.5 20 31-50 53-72 (107)
8 d1icfi_ g.28.1.1 (I:) Class II 9.5 63 0.0041 12.9 1.3 18 32-49 20-37 (65)
9 d1ju8a_ g.3.6.4 (A:) Leginsuli 8.2 54 0.0035 13.3 0.5 18 23-40 6-27 (37)
10 d1b8ta1 g.39.1.3 (A:1-35) Cyst 7.3 81 0.0052 12.4 1.1 24 32-57 10-34 (35)
No 1
>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.69 E-value=37 Score=14.16 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=16.9
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 3123235674446764568
Q T0531 31 TTPECGPTGYVEKITCSSS 49 (65)
Q Consensus 31 s~~~C~~Tgy~E~i~C~~S 49 (65)
=||.|-..|+.+.+.|-.|
T Consensus 29 yiP~C~~dG~y~~~QC~~s 47 (79)
T d2dsrg1 29 PIPNCDRNGNFHPKQCHPA 47 (79)
T ss_dssp CCCCBCTTSSBCSEEECCC
T ss_pred CCCCCCCCCCEEEEEEECC
T ss_conf 6767699998744772415
No 2
>d1n8ma_ g.3.7.2 (A:) PI4, potassium channel blocking toxin 4 {Scorpion (Pandinus imperator) [TaxId: 55084]}
Probab=14.49 E-value=5.7 Score=18.47 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=11.9
Q ss_pred EEEEEECCCCCEEEECCC
Q ss_conf 446764568833440388
Q T0531 41 VEKITCSSSKRNEFKSCR 58 (65)
Q Consensus 41 ~E~i~C~~S~~~~~kSCr 58 (65)
+|.|+|+.|+ +-|++|+
T Consensus 1 ~e~irC~gsk-dCy~PC~ 17 (38)
T d1n8ma_ 1 IEAIRCGGSR-DCYRPCQ 17 (38)
T ss_dssp CCCCBCSSTH-HHHHHHH
T ss_pred CCEEEECCCC-HHCCHHH
T ss_conf 9258864850-2144377
No 3
>d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.29 E-value=42 Score=13.90 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=16.5
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 3123235674446764568
Q T0531 31 TTPECGPTGYVEKITCSSS 49 (65)
Q Consensus 31 s~~~C~~Tgy~E~i~C~~S 49 (65)
-+|.|-..|+.+.+.|-.|
T Consensus 19 ~iP~C~~~G~y~~vQC~~~ 37 (65)
T d1icfi_ 19 FRPKCDENGNYLPLQCYGS 37 (65)
T ss_dssp CCCCBCTTSCBCSEEEETT
T ss_pred CCCCCCCCCCEEEEEECCC
T ss_conf 3564189997413655189
No 4
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=12.36 E-value=52 Score=13.41 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEECC
Q ss_conf 644421312323567444676456883344038
Q T0531 25 SNFRAKTTPECGPTGYVEKITCSSSKRNEFKSC 57 (65)
Q Consensus 25 s~Feiks~~~C~~Tgy~E~i~C~~S~~~~~kSC 57 (65)
+.|+....+.=++.+|++.|.+.-.|+.++.-=
T Consensus 31 TG~r~d~~g~~IPa~~I~~v~v~~ng~~v~~a~ 63 (106)
T d1v8ha1 31 PGTRRDAEGKLIPAKYINLVEVYFEGEKVAEAR 63 (106)
T ss_dssp CSCCBCTTSCBCCCBCEEEEEEEETTEEEEEEC
T ss_pred CCCCCCCCCCEECHHHEEEEEEEECCEEEEEEE
T ss_conf 320128889991478038999999999999998
No 5
>d2dsqg1 g.28.1.1 (G:149-231) Insulin-like growth factor-binding protein 1, IGFBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=54 Score=13.30 Aligned_cols=18 Identities=28% Similarity=0.798 Sum_probs=16.4
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 123235674446764568
Q T0531 32 TPECGPTGYVEKITCSSS 49 (65)
Q Consensus 32 ~~~C~~Tgy~E~i~C~~S 49 (65)
||.|-..|+.+.+.|-.|
T Consensus 30 iP~C~~dG~y~~~QC~~s 47 (83)
T d2dsqg1 30 LPNCNKNGFYHSRQCETS 47 (83)
T ss_dssp CCCBCTTSSBCSEEECBC
T ss_pred CCCCCCCCCEEEEEEECC
T ss_conf 877699998721760125
No 6
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=11.06 E-value=57 Score=13.17 Aligned_cols=23 Identities=35% Similarity=0.801 Sum_probs=17.6
Q ss_pred CCCCCCCCE-EEEEECCCCCEEEECC
Q ss_conf 232356744-4676456883344038
Q T0531 33 PECGPTGYV-EKITCSSSKRNEFKSC 57 (65)
Q Consensus 33 ~~C~~Tgy~-E~i~C~~S~~~~~kSC 57 (65)
++|..|-|. |-|+|- |+-.-|||
T Consensus 4 g~c~ktvy~aeevqc~--grsfhk~c 27 (28)
T d1a7ia1 4 GACGRTVYHAEEVQCD--GRSFHRCC 27 (28)
T ss_dssp SSSCCBCSSTTEEEET--TEEEESSS
T ss_pred CCCCCEEEEEEEEEEC--CCEECCCC
T ss_conf 5455457662005416--81102144
No 7
>d1rmja_ g.28.1.1 (A:) Insulin-like growth factor binding protein 6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.50 E-value=37 Score=14.15 Aligned_cols=20 Identities=35% Similarity=0.765 Sum_probs=16.8
Q ss_pred CCCCCCCCCCEEEEEECCCC
Q ss_conf 31232356744467645688
Q T0531 31 TTPECGPTGYVEKITCSSSK 50 (65)
Q Consensus 31 s~~~C~~Tgy~E~i~C~~S~ 50 (65)
-||.|-..|+.+.++|..|.
T Consensus 53 fiP~Cd~dG~Y~~~QC~~s~ 72 (107)
T d1rmja_ 53 YVPNCDHRGFYRKRQCRSSQ 72 (107)
T ss_dssp EEECCCTTSSCCSEEEEEES
T ss_pred CCCCCCCCCCEECEECCCCC
T ss_conf 99676999989020178777
No 8
>d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.49 E-value=63 Score=12.95 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=15.8
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 123235674446764568
Q T0531 32 TPECGPTGYVEKITCSSS 49 (65)
Q Consensus 32 ~~~C~~Tgy~E~i~C~~S 49 (65)
+|.|-..|+.+.+.|-.|
T Consensus 20 iP~C~~dG~y~~~QC~~~ 37 (65)
T d1icfi_ 20 RPKCDENGNYLPLQCYGS 37 (65)
T ss_dssp CCCBCTTSCBCSEEEETT
T ss_pred CCCCCCCCCEEEEEECCC
T ss_conf 867499998854564699
No 9
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=8.20 E-value=54 Score=13.32 Aligned_cols=18 Identities=33% Similarity=0.853 Sum_probs=10.2
Q ss_pred CCCCCCC---CCCC-CCCCCCC
Q ss_conf 7764442---1312-3235674
Q T0531 23 PCSNFRA---KTTP-ECGPTGY 40 (65)
Q Consensus 23 pCs~Fei---ks~~-~C~~Tgy 40 (65)
-||.||+ .|.+ -|++-|.
T Consensus 6 ~CspFemPpc~s~dCRCiP~gL 27 (37)
T d1ju8a_ 6 ACSPFEVPPCRSRDCRCVPIGL 27 (37)
T ss_dssp EECSSSSSSSSCTTSEEEECSS
T ss_pred CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 2366636988998726787577
No 10
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.29 E-value=81 Score=12.38 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=17.4
Q ss_pred CCCCCCCCC-EEEEEECCCCCEEEECC
Q ss_conf 123235674-44676456883344038
Q T0531 32 TPECGPTGY-VEKITCSSSKRNEFKSC 57 (65)
Q Consensus 32 ~~~C~~Tgy-~E~i~C~~S~~~~~kSC 57 (65)
-++|..|-| -|-|.|- |+-.-|||
T Consensus 10 cg~c~ktvy~aeevqc~--g~sfhk~c 34 (35)
T d1b8ta1 10 CGVCQKAVYFAEEVQCE--GSSFHKSC 34 (35)
T ss_dssp CTTTCCEECSSCCEEET--TEEECTTT
T ss_pred ECCCCCEEEEEEEEEEC--CCCCCCCC
T ss_conf 05444347660325416--83002134
Done!