Query T0532 YP_210662.1, Bacteroides fragilis nctc 9343, 506 residues
Match_columns 506
No_of_seqs 241 out of 2874
Neff 9.9
Searched_HMMs 11830
Date Fri May 21 18:07:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0532.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0532.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07980 SusD: SusD family; I 99.8 1.8E-22 1.6E-26 145.4 -0.7 203 255-486 33-263 (266)
2 PF08085 Entericidin: Enterici 85.5 0.19 1.6E-05 23.2 2.4 22 1-22 1-23 (42)
3 PF07901 DUF1672: Protein of u 84.4 0.22 1.8E-05 22.9 2.3 21 1-23 1-21 (304)
4 PF03304 Mlp: Mlp lipoprotein 82.2 0.26 2.2E-05 22.4 2.0 20 1-22 1-20 (181)
5 PF07273 DUF1439: Protein of u 78.2 0.17 1.4E-05 23.5 -0.1 37 1-44 1-37 (177)
6 PF06085 Rz1: Lipoprotein Rz1 75.8 0.69 5.8E-05 19.9 2.5 24 1-24 1-24 (59)
7 PF02402 Lysis_col: Lysis prot 75.4 0.24 2.1E-05 22.5 0.1 20 1-21 1-20 (46)
8 PF03207 OspD: Borrelia outer 73.3 0.85 7.2E-05 19.4 2.5 21 1-21 1-21 (254)
9 PF06291 Lambda_Bor: Bor prote 73.3 0.69 5.8E-05 19.9 2.0 19 1-22 1-19 (97)
10 PF01298 Lipoprotein_5: Transf 72.8 0.87 7.4E-05 19.3 2.4 21 1-21 1-22 (593)
11 PF02030 Lipoprotein_8: Hypoth 72.4 0.9 7.6E-05 19.2 2.4 22 1-22 1-25 (493)
12 PF12262 Lipase_bact_N: Bacter 72.2 1.3 0.00011 18.3 3.2 21 1-22 1-21 (268)
13 PF11153 DUF2931: Protein of u 71.4 0.77 6.5E-05 19.6 1.9 18 1-22 1-18 (216)
14 PF10671 TcpQ: Toxin co-regula 68.3 0.91 7.7E-05 19.2 1.7 26 1-29 1-26 (169)
15 PF07719 TPR_2: Tetratricopept 67.8 1.2 0.0001 18.4 2.3 29 346-374 1-29 (34)
16 PF12092 DUF3568: Protein of u 64.4 1.6 0.00013 17.9 2.3 19 2-20 1-19 (131)
17 PF08139 LPAM_1: Prokaryotic m 58.0 2.5 0.00021 16.6 2.4 17 2-21 9-25 (26)
18 PF11839 DUF3359: Protein of u 55.9 2.7 0.00023 16.5 2.3 22 1-23 1-22 (96)
19 PF00515 TPR_1: Tetratricopept 55.0 3.4 0.00029 15.8 2.7 30 346-375 1-30 (34)
20 PF03978 Borrelia_REV: Borreli 53.2 1.9 0.00016 17.4 1.1 23 1-23 1-23 (160)
21 PF10566 Glyco_hydro_97: Glyco 51.1 1.3 0.00011 18.3 0.0 20 1-20 1-21 (643)
22 PF06518 DUF1104: Protein of u 46.8 4.4 0.00038 15.2 2.2 25 1-25 1-25 (142)
23 PF01514 YscJ_FliF: Secretory 46.0 1.4 0.00012 18.1 -0.4 27 148-175 162-188 (206)
24 PF05643 DUF799: Putative bact 45.6 4.5 0.00038 15.2 2.0 17 1-20 1-17 (215)
25 PF05540 Serpulina_VSP: Serpul 39.2 4.1 0.00035 15.4 1.0 18 1-21 1-18 (377)
26 PF07305 DUF1454: Protein of u 36.2 4.4 0.00037 15.2 0.8 39 1-44 1-39 (200)
27 PF04507 DUF576: Protein of un 35.9 7.5 0.00063 13.9 2.4 23 1-23 1-26 (257)
28 PF11873 DUF3393: Domain of un 34.5 4.5 0.00038 15.2 0.6 14 8-21 4-17 (204)
29 PF01441 Lipoprotein_6: Lipopr 33.5 3.6 0.0003 15.8 0.0 50 83-132 95-149 (210)
30 PF06474 MLTD_N: MLTD_N; Inte 29.7 9.5 0.0008 13.3 3.2 20 1-24 1-20 (95)
31 PF07721 TPR_4: Tetratricopept 29.3 9.6 0.00081 13.3 1.7 25 346-370 1-25 (26)
32 PF06572 DUF1131: Protein of u 24.1 6.6 0.00056 14.2 0.0 12 10-21 8-19 (192)
33 PF05079 DUF680: Protein of un 24.0 12 0.001 12.7 3.1 27 1-27 1-29 (75)
34 PF02352 Decorin_bind: Decorin 22.4 13 0.0011 12.5 2.4 21 1-21 1-21 (166)
35 PF05590 DUF769: Xylella fasti 22.1 13 0.0011 12.4 1.9 23 469-491 250-272 (284)
36 PF05170 AsmA: AsmA family; I 21.3 14 0.0012 12.4 2.5 11 1-11 1-11 (604)
37 PF11777 DUF3316: Protein of u 21.2 14 0.0012 12.3 2.3 13 1-13 1-13 (114)
38 PF09710 Trep_dent_lipo: Trepo 21.1 10 0.00086 13.1 0.5 16 7-22 5-20 (394)
39 PF11853 DUF3373: Protein of u 20.4 14 0.0012 12.2 2.3 22 338-359 398-419 (489)
No 1
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding .; PDB: 3hdx_A 3ck8_B 3ckb_A 3ck7_D 3ck9_A 3ckc_A.
Probab=99.82 E-value=1.8e-22 Score=145.42 Aligned_cols=203 Identities=19% Similarity=0.144 Sum_probs=116.7
Q ss_pred CCCCCCCCCHHHHHHHHH------HCCCCCEEEEEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 346655420048999875------13688502555641665545--6644566543145546655554555432333345
Q T0532 255 NTKHAGYAMLSTMLIDKF------KATGDIRMFYYAKPAKAKLN--EGVTADSWDAYIGTDPSLPFEQIEKAYATEQYSG 326 (506)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~------~~~~DpR~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 326 (506)
...+++...++..+++.+ ...+|||+...+........ .........................++...|+..
T Consensus 33 ~~~~~~~~~~s~~~~~~f~~~~~~~~~~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~ 112 (266)
T PF07980_consen 33 GGNGWGGFCPSPELVDLFYDNNNPDKNRDPRFYATFITPGDTYDKASNYYKDGGGSNGTAYSISSNGNSNTGYYIRKFYD 112 (266)
T ss_dssp -------EEE-HHHHTTTHHHHHHHHH----HHHHHHH---TT------EE---------SSSSCE-TTSSS-EE-SS-S
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 76887761248999996430025789949046647866780012332333455444566655666666655447886224
Q ss_pred -CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHH
Q ss_conf -6765577878885211526899999999998578982379999999999999730233100001345555445677665
Q T0532 327 -FNARYTDYPSGEPVVRLGYAEQNFILAEAAVRGWISGDASAYYKKAIRAHMEFIASNTPDEEVYHHGHPITEEAIAAFL 405 (506)
Q Consensus 327 -~~~~~~~~~~~~~~~~~r~AEv~ll~AEA~~r~g~~~~A~~~y~~gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (506)
............++++||+||||||+|||++|+|+..+|.+++|+ ||... +... .+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~R~aEvyL~~AEA~~~~g~~~~A~~~ln~-vR~Ra---g~~~-----------~~~------- 170 (266)
T PF07980_consen 113 NDSNSNNNTNSGNDYPLMRYAEVYLIYAEALNRLGNPSEAIEYLNQ-VRKRA---GLPA-----------YTD------- 170 (266)
T ss_dssp -----S-SSS----EEEEEHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHCCT---T-SS-------------H-------
T ss_pred CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHC---CCCC-----------CCC-------
T ss_conf 5677667777878888857999999999999876884479999999-99964---9995-----------421-------
Q ss_pred HCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHCHH-CCCCC-CCC-------CCCCCCCC--C-------CCCC
Q ss_conf 2144335776-088999999999999636871146651101-27870-034-------56777777--7-------7753
Q T0532 406 ETPAIQLSGE-KEADIEKILTQRYLASFMQHPYDVYYDYRR-TGYPV-LPI-------NPATNRNT--M-------NDRL 466 (506)
Q Consensus 406 ~~~~~~~~~~-~~~~le~I~~Qk~ia~~~~~~~e~w~d~RR-tgyP~-l~~-------~~~~~~~~--~-------~~~~ 466 (506)
....+ .+..++.|+.||++||++|+. .|+|+|| .+... ... ........ . ....
T Consensus 171 -----~~~~~~~~~~~~~I~~ER~~EL~~Eg~--R~~Dl~Rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (266)
T PF07980_consen 171 -----SAYAANKDALLDEILDERRRELAGEGH--RWFDLRRWMGALEERKEPYNIGNDFNINPDAVYYNYTPKWNSPSDK 243 (266)
T ss_dssp -----HHH---CCHHHHHHHHHHHHHCTT-----HHHHHHH-HHHHCSTTCHHCHHHH-------GGGG-----------
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----000020699999999999999975478--3888707766305553214776544555654444332111223221
Q ss_pred CEEEECCCCHHHCCHHHHHH
Q ss_conf 15631772034416789999
Q T0532 467 PMRWMYPKSESDYNLEHQNE 486 (506)
Q Consensus 467 p~R~~yp~~e~~~N~~~~~~ 486 (506)
..-+|+|++|++.||+..|.
T Consensus 244 ~~~~PIP~~ei~~n~~l~QN 263 (266)
T PF07980_consen 244 WFLWPIPQSEIDANPNLTQN 263 (266)
T ss_dssp --S----HHHHHH-TT----
T ss_pred CEEECCCHHHHHHCCCCCCC
T ss_conf 46767088999348897689
No 2
>PF08085 Entericidin: Entericidin EcnA/B family; InterPro: IPR012556 This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing .; GO: 0009636 response to toxin, 0016020 membrane
Probab=85.46 E-value=0.19 Score=23.20 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=14.7
Q ss_pred CCH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 912-7899999999999736773
Q T0532 1 MKR-INKYISLLLATALLASCDK 22 (506)
Q Consensus 1 MKk-i~~~i~~~~~~~~~tSC~d 22 (506)
||| +..+++++++++.+++|+-
T Consensus 1 Mkk~~~~~~~~~~~~~~l~gCnT 23 (42)
T PF08085_consen 1 MKKKILIILALLALALALAGCNT 23 (42)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95589999999999998800263
No 3
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=84.39 E-value=0.22 Score=22.86 Aligned_cols=21 Identities=52% Similarity=0.714 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 91278999999999997367731
Q T0532 1 MKRINKYISLLLATALLASCDKF 23 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~df 23 (506)
|||++ +++++++++++||+..
T Consensus 1 M~K~i--~~ll~~~lLLgGCs~m 21 (304)
T PF07901_consen 1 MKKRI--ISLLAATLLLGGCSNM 21 (304)
T ss_pred CHHHH--HHHHHHHHHHCCCCCC
T ss_conf 91489--9999999997444467
No 4
>PF03304 Mlp: Mlp lipoprotein family; InterPro: IPR004983 The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species . This family were previously known as 2.9 lipoprotein genes . These surface expressed genes may represent new candidate vaccinogens for Lyme disease . Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=82.20 E-value=0.26 Score=22.36 Aligned_cols=20 Identities=50% Similarity=0.637 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9127899999999999736773
Q T0532 1 MKRINKYISLLLATALLASCDK 22 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~d 22 (506)
||.|. |+++++++++.||+.
T Consensus 1 mKiin--ilfcl~lllL~~Cn~ 20 (181)
T PF03304_consen 1 MKIIN--ILFCLFLLLLNSCNS 20 (181)
T ss_pred CCEEH--HHHHHHHHHHHCCCC
T ss_conf 94405--899999999947676
No 5
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3eyr_B.
Probab=78.16 E-value=0.17 Score=23.48 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 91278999999999997367731125788786763468899999
Q T0532 1 MKRINKYISLLLATALLASCDKFDEINTDPDATTKVTSSLLATG 44 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfld~n~dp~~~t~~~~~~~~~~ 44 (506)
||++.. +++++++++++|... +++.+++.+.+..+..
T Consensus 1 Mk~~~~--~~l~~~~~L~gC~~~-----~~ysise~eiq~~L~k 37 (177)
T PF07273_consen 1 MKKLLL--LALILALLLTGCASL-----SQYSISEQEIQQYLAK 37 (177)
T ss_dssp --------------------CHC-----CEEEE-HHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHHHCCCCC-----CCEEECHHHHHHHHHH
T ss_conf 926999--999999998612556-----6166879999999986
No 6
>PF06085 Rz1: Lipoprotein Rz1 precursor; InterPro: IPR010346 This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda, which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces .; GO: 0019064 viral envelope fusion with host membrane, 0019867 outer membrane
Probab=75.82 E-value=0.69 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 912789999999999973677311
Q T0532 1 MKRINKYISLLLATALLASCDKFD 24 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfl 24 (506)
||+++-.++.+++.+.+++|..-.
T Consensus 1 Mr~l~~~l~~~~~~L~lsaC~S~p 24 (59)
T PF06085_consen 1 MRKLKMLLCALALPLALSACSSKP 24 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 903899999999999998715899
No 7
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined . The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells . A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB . Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C-terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively . Sequence similarities between colicins E2, A and E1 are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides . Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase . The mature ColE2 lysis protein is located in the cell envelope . ; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=75.40 E-value=0.24 Score=22.54 Aligned_cols=20 Identities=50% Similarity=0.612 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 912789999999999973677
Q T0532 1 MKRINKYISLLLATALLASCD 21 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~ 21 (506)
||||..++.+++. +++++|.
T Consensus 1 MkKi~~~~i~~~~-~~L~aCQ 20 (46)
T PF02402_consen 1 MKKILFIGILLLT-MLLAACQ 20 (46)
T ss_pred CCEEEEEHHHHHH-HHHHHHH
T ss_conf 9478773899999-9998720
No 8
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=73.32 E-value=0.85 Score=19.38 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 912789999999999973677
Q T0532 1 MKRINKYISLLLATALLASCD 21 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~ 21 (506)
|||+++++++.+++++--||.
T Consensus 1 mkklikill~slflllsisc~ 21 (254)
T PF03207_consen 1 MKKLIKILLLSLFLLLSISCV 21 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHC
T ss_conf 916999999999999863212
No 9
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis .
Probab=73.29 E-value=0.69 Score=19.92 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9127899999999999736773
Q T0532 1 MKRINKYISLLLATALLASCDK 22 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~d 22 (506)
|||+. +.+++++++++|..
T Consensus 1 mkk~l---l~~~l~llltgCa~ 19 (97)
T PF06291_consen 1 MKKIL---LAAALALLLTGCAQ 19 (97)
T ss_pred CHHHH---HHHHHHHHHCCCCE
T ss_conf 90049---99999999645663
No 10
>PF01298 Lipoprotein_5: Transferrin binding protein-like solute binding protein; InterPro: IPR001677 Bacterial transferrin binding proteins act as transferrin receptors and are required for transferrin utilisation. Transferrins are iron-binding glycoproteins that control the level of free iron in biological fluids. ; GO: 0004998 transferrin receptor activity, 0016020 membrane
Probab=72.82 E-value=0.87 Score=19.32 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCHH-HHHHHHHHHHHHHHCCC
Q ss_conf 9127-89999999999973677
Q T0532 1 MKRI-NKYISLLLATALLASCD 21 (506)
Q Consensus 1 MKki-~~~i~~~~~~~~~tSC~ 21 (506)
||+. ++..++++++++|++|+
T Consensus 1 M~~~~~~~~~~~l~~~lLsACs 22 (593)
T PF01298_consen 1 MNNPPLNQSAIALAAFLLSACS 22 (593)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9865552558999999998734
No 11
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family); InterPro: IPR000044 Mycoplasma genitalium has the smallest known genome of any free-living organism. Its complete genome sequence has been determined by whole-genome random sequencing and assembly . Only 470 putative coding regions were identified, including genes for DNA replication, transcription and translation, DNA repair, cellular transport and energy metabolism . A hypothetical protein from the MG045 gene has a homologue of similarly unknown function in Mycoplasma pneumoniae .; GO: 0016020 membrane
Probab=72.43 E-value=0.9 Score=19.25 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHH---HHHHHHCCCC
Q ss_conf 912789999999---9999736773
Q T0532 1 MKRINKYISLLL---ATALLASCDK 22 (506)
Q Consensus 1 MKki~~~i~~~~---~~~~~tSC~d 22 (506)
|||+++++.+++ +..+++||++
T Consensus 1 mk~~~k~~~~~~~l~~~~~ltac~~ 25 (493)
T PF02030_consen 1 MKKQKKFLFSLIGLTFSSILTACSK 25 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9404678999999999888764455
No 12
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=72.25 E-value=1.3 Score=18.28 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9127899999999999736773
Q T0532 1 MKRINKYISLLLATALLASCDK 22 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~d 22 (506)
|||.++ .++++.++.+++|.+
T Consensus 1 Mkk~~l-~~~iasal~LaGCg~ 21 (268)
T PF12262_consen 1 MKKKLL-SLAIASALGLAGCGG 21 (268)
T ss_pred CCHHHH-HHHHHHHHHCCCCCC
T ss_conf 943589-999999975111479
No 13
>PF11153 DUF2931: Protein of unknown function (DUF2931)
Probab=71.36 E-value=0.77 Score=19.62 Aligned_cols=18 Identities=56% Similarity=0.785 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9127899999999999736773
Q T0532 1 MKRINKYISLLLATALLASCDK 22 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~d 22 (506)
||||+ +++++++++||+.
T Consensus 1 m~~i~----~lll~lll~~Cs~ 18 (216)
T PF11153_consen 1 MKKIL----LLLLLLLLAGCST 18 (216)
T ss_pred CCCHH----HHHHHHHHHHCCC
T ss_conf 90079----9999999975368
No 14
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q
Probab=68.30 E-value=0.91 Score=19.21 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 91278999999999997367731125788
Q T0532 1 MKRINKYISLLLATALLASCDKFDEINTD 29 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfld~n~d 29 (506)
|||. ++++.+++++++|+.-+-+|++
T Consensus 1 ~kkn---~i~~~~~i~lsGcs~~~s~~t~ 26 (169)
T PF10671_consen 1 MKKN---LIAITLAIMLSGCSSIQSLNTS 26 (169)
T ss_pred CCCC---EEHHHHHHHHCCCCCCCCCCCC
T ss_conf 9740---3037789884263334543455
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO. See: , . ; PDB: 2pl2_A 2if4_A.
Probab=67.77 E-value=1.2 Score=18.44 Aligned_cols=29 Identities=24% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999999857898237999999999
Q T0532 346 AEQNFILAEAAVRGWISGDASAYYKKAIR 374 (506)
Q Consensus 346 AEv~ll~AEA~~r~g~~~~A~~~y~~gi~ 374 (506)
||+++.++.+..+.|+-..|..+|+++++
T Consensus 1 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYNLGYAYYKQGDYDEAIEAFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98999999999995899999999999997
No 16
>PF12092 DUF3568: Protein of unknown function (DUF3568)
Probab=64.38 E-value=1.6 Score=17.86 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHCC
Q ss_conf 1278999999999997367
Q T0532 2 KRINKYISLLLATALLASC 20 (506)
Q Consensus 2 Kki~~~i~~~~~~~~~tSC 20 (506)
||++..++++++++.++||
T Consensus 1 kk~~~~~l~~~~~l~l~sC 19 (131)
T PF12092_consen 1 KKLLLATLIAASALSLSSC 19 (131)
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 9128999999999987143
No 17
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 This family consists of the homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection .
Probab=57.99 E-value=2.5 Score=16.63 Aligned_cols=17 Identities=53% Similarity=0.829 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHHHCCC
Q ss_conf 12789999999999973677
Q T0532 2 KRINKYISLLLATALLASCD 21 (506)
Q Consensus 2 Kki~~~i~~~~~~~~~tSC~ 21 (506)
||| +.++++++++++|+
T Consensus 9 Kki---l~~~~a~~~LaGCs 25 (26)
T PF08139_consen 9 KKI---LFLLLALFMLAGCS 25 (26)
T ss_pred HHH---HHHHHHHHHHHHCC
T ss_conf 999---99999999983314
No 18
>PF11839 DUF3359: Protein of unknown function (DUF3359)
Probab=55.90 E-value=2.7 Score=16.48 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 91278999999999997367731
Q T0532 1 MKRINKYISLLLATALLASCDKF 23 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~df 23 (506)
|||++ +-.+++.++++.+|-..
T Consensus 1 M~~~l-~s~~~~~~~L~~GCAs~ 22 (96)
T PF11839_consen 1 MKKLL-ISALALAALLAAGCAST 22 (96)
T ss_pred CCHHH-HHHHHHHHHHHHHCCCC
T ss_conf 90599-99999999998572688
No 19
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins , , . It mediates proteinprotein interactions and the assembly of multiprotein complexes . The TPR motif consists of 316 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices . The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24° within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; PDB: 2kc7_A 2kck_A 2c2l_D 2vyi_B 1ihg_A 1p5q_C 1qz2_C 1kt0_A 1kt1_A 1wao_1 ....
Probab=55.02 E-value=3.4 Score=15.85 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 899999999998578982379999999999
Q T0532 346 AEQNFILAEAAVRGWISGDASAYYKKAIRA 375 (506)
Q Consensus 346 AEv~ll~AEA~~r~g~~~~A~~~y~~gi~~ 375 (506)
|++++.++.+..+.++-..|..+|+++|+.
T Consensus 1 A~~~~~~G~~~~~~~~~~~Ai~~~~~Al~l 30 (34)
T PF00515_consen 1 AEAYYNLGNCYFKLGDYDEAIEYYEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 989999999999959989999999999977
No 20
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli .
Probab=53.16 E-value=1.9 Score=17.38 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 91278999999999997367731
Q T0532 1 MKRINKYISLLLATALLASCDKF 23 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~df 23 (506)
||+.+++-++++.+++..||.-|
T Consensus 1 MknkNI~KLfFvsmlfvmaCk~y 23 (160)
T PF03978_consen 1 MKNKNIFKLFFVSMLFVMACKAY 23 (160)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97400999999999999999999
No 21
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; PDB: 2jkp_A 2zq0_A 2jke_B 2d73_B 2jka_B.
Probab=51.05 E-value=1.3 Score=18.32 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHH-HCC
Q ss_conf 91278999999999997-367
Q T0532 1 MKRINKYISLLLATALL-ASC 20 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~-tSC 20 (506)
|||++++++++++++++ ++|
T Consensus 1 MKk~~i~~l~~~l~~~~~~~~ 21 (643)
T PF10566_consen 1 MKKLIIILLALLLLLSASSSA 21 (643)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 943799999999998741120
No 22
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.
Probab=46.77 E-value=4.4 Score=15.20 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9127899999999999736773112
Q T0532 1 MKRINKYISLLLATALLASCDKFDE 25 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfld 25 (506)
|||.+.++++.++++++-+-.||-.
T Consensus 1 mKk~~~i~l~~~L~~~~l~AaDFSk 25 (142)
T PF06518_consen 1 MKKAVSILLVSLLLASFLNAADFSK 25 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9147999999999999861575422
No 23
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins .; PDB: 1yj7_D.
Probab=46.01 E-value=1.4 Score=18.07 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7878889999999999999998445556
Q T0532 148 PKYNTQKEVMNFILSDLETAYELFSTAK 175 (506)
Q Consensus 148 p~~~s~~evy~~I~~dL~~A~~~L~~~~ 175 (506)
|.++.. +.-..|....-.|++.|+...
T Consensus 162 ~~~~l~-~qv~~I~~LVA~sV~gL~~en 188 (206)
T PF01514_consen 162 PGRDLS-EQVEGIKNLVASSVPGLKPEN 188 (206)
T ss_dssp TTS--G-GGHHHHHHHHHHHSTT--GGG
T ss_pred CCCCHH-HHHHHHHHHHHHHCCCCCCCC
T ss_conf 999869-999999999997579998145
No 24
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=45.58 E-value=4.5 Score=15.20 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 91278999999999997367
Q T0532 1 MKRINKYISLLLATALLASC 20 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC 20 (506)
||+++ +.++++++|++|
T Consensus 1 ~k~~~---~~l~~~l~LsgC 17 (215)
T PF05643_consen 1 MKPLL---LGLAALLLLSGC 17 (215)
T ss_pred CHHHH---HHHHHHHHHHHC
T ss_conf 90059---999999999607
No 25
>PF05540 Serpulina_VSP: Serpulina hyodysenteriae variable surface protein; InterPro: IPR008838 This family consists of several variable surface proteins from Brachyspira hyodysenteriae.
Probab=39.20 E-value=4.1 Score=15.42 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 912789999999999973677
Q T0532 1 MKRINKYISLLLATALLASCD 21 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~ 21 (506)
|||++. .++++++++||+
T Consensus 1 MKK~lL---~~~allti~~~S 18 (377)
T PF05540_consen 1 MKKFLL---TAIALLTIASAS 18 (377)
T ss_pred CCEEHH---HHHHHHHHHHHH
T ss_conf 925268---899999998766
No 26
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=36.18 E-value=4.4 Score=15.25 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 91278999999999997367731125788786763468899999
Q T0532 1 MKRINKYISLLLATALLASCDKFDEINTDPDATTKVTSSLLATG 44 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfld~n~dp~~~t~~~~~~~~~~ 44 (506)
||++..+++++++.+..+.|.| ...+ ..+..++.+++.+
T Consensus 1 mk~~~~l~~~~~~~l~~~a~a~--~a~~---~~t~~~apYLl~g 39 (200)
T PF07305_consen 1 MKPGAILFLLLCLTLPQSAAAD--KAPT---PSTTPTAPYLLAG 39 (200)
T ss_pred CCCHHHHHHHHHHCCCCCCCCC--CCCC---CCCCCCCHHHCCC
T ss_conf 9605788999970543445444--4689---9988775234089
No 27
>PF04507 DUF576: Protein of unknown function, DUF576; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins.
Probab=35.86 E-value=7.5 Score=13.90 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=11.5
Q ss_pred CCHH---HHHHHHHHHHHHHHCCCCC
Q ss_conf 9127---8999999999997367731
Q T0532 1 MKRI---NKYISLLLATALLASCDKF 23 (506)
Q Consensus 1 MKki---~~~i~~~~~~~~~tSC~df 23 (506)
||.+ ..+|++++++++.+||...
T Consensus 1 M~~~kkl~l~is~liLii~I~Gcg~~ 26 (257)
T PF04507_consen 1 MKYSKKLALYISLLILIIFIGGCGIM 26 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92156679999999999988313455
No 28
>PF11873 DUF3393: Domain of unknown function (DUF3393)
Probab=34.55 E-value=4.5 Score=15.19 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999973677
Q T0532 8 ISLLLATALLASCD 21 (506)
Q Consensus 8 i~~~~~~~~~tSC~ 21 (506)
+++++++++++||+
T Consensus 4 l~~~~~~llL~~Cs 17 (204)
T PF11873_consen 4 LILLLIILLLSSCS 17 (204)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 19999999999857
No 29
>PF01441 Lipoprotein_6: Lipoprotein This Pfam family is a subset of the Prosite family.; InterPro: IPR001800 Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens . They are predominantly found in the Spirochaetaceae.; GO: 0006952 defense response, 0009279 cell outer membrane; PDB: 1f1m_C 1g5z_A 2ga0_E 1yjg_E 1ggq_C.
Probab=33.52 E-value=3.6 Score=15.76 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4417789999999999997315667-----9999999999999999999986189
Q T0532 83 GRSGFGGYTTLINAQKMVESVSDDN-----VNAYDGLAHFIKAYKIFYMSMEMGD 132 (506)
Q Consensus 83 ~~~w~~~Y~~i~~~n~~i~~~~~~~-----~~~~~geA~~lRA~~y~~L~~~yG~ 132 (506)
.+---+.|..+..+..-++.....+ .+.-+..|+-.-.=+--.|-+-..+
T Consensus 95 gSLlAGay~I~~~i~~KL~~L~~~~g~s~eLK~kI~~aK~~s~aF~~KlK~~ha~ 149 (210)
T PF01441_consen 95 GSLLAGAYSISTLITQKLSGLKNSEGISDELKEKIEDAKKCSEAFTNKLKDSHAD 149 (210)
T ss_dssp HHHH---HHHHHHHHHHHHCCTTTT---TTTHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1189999999999999999874541216899999999999689999998776677
No 30
>PF06474 MLTD_N: MLTD_N; InterPro: IPR010511 This entry comprises the N-terminal domain of membrane-bound lytic murein transglycosylase D .
Probab=29.72 E-value=9.5 Score=13.29 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 912789999999999973677311
Q T0532 1 MKRINKYISLLLATALLASCDKFD 24 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~dfl 24 (506)
||- ++++++++++++|....
T Consensus 1 m~~----~~~l~~~llLaGCqs~~ 20 (95)
T PF06474_consen 1 MRF----LAVLALALLLAGCQSTP 20 (95)
T ss_pred CHH----HHHHHHHHHHHHCCCCC
T ss_conf 929----99999999998467999
No 31
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) .
Probab=29.31 E-value=9.6 Score=13.25 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8999999999985789823799999
Q T0532 346 AEQNFILAEAAVRGWISGDASAYYK 370 (506)
Q Consensus 346 AEv~ll~AEA~~r~g~~~~A~~~y~ 370 (506)
+...+.+|+++.+.|+...|.+.++
T Consensus 1 ~~a~~~la~~~~~~G~~~~A~~~~~ 25 (26)
T PF07721_consen 1 PRALYNLARALLAQGRPDEARALLE 25 (26)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9888999999999599999999973
No 32
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This family consists of several hypothetical bacterial proteins of unknown function.; PDB: 2qzb_B.
Probab=24.11 E-value=6.6 Score=14.22 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999973677
Q T0532 10 LLLATALLASCD 21 (506)
Q Consensus 10 ~~~~~~~~tSC~ 21 (506)
++...+++++|+
T Consensus 8 ll~~~lll~gCs 19 (192)
T PF06572_consen 8 LLGGPLLLTGCS 19 (192)
T ss_dssp ------------
T ss_pred HHHHHHHHHCCC
T ss_conf 987589874455
No 33
>PF05079 DUF680: Protein of unknown function (DUF680); InterPro: IPR007771 This family contains uncharacterised proteins which seem to be found exclusively in Mesorhizobium loti.
Probab=24.02 E-value=12 Score=12.68 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHH--HHHHHHCCCCCCCCC
Q ss_conf 912789999999--999973677311257
Q T0532 1 MKRINKYISLLL--ATALLASCDKFDEIN 27 (506)
Q Consensus 1 MKki~~~i~~~~--~~~~~tSC~dfld~n 27 (506)
||||......++ ....|.+-..+.+-|
T Consensus 1 MkKi~L~aaA~l~~sgsAFAgs~~~g~~~ 29 (75)
T PF05079_consen 1 MKKIALTAAALLLISGSAFAGSDHVGSPN 29 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 91699999999996537651898889877
No 34
>PF02352 Decorin_bind: Decorin binding protein; InterPro: IPR003332 Decorin is a proteoglycan that decorates collagen fibres. Borrelia burgdorferi causes lyme disease, a tick-borne infection that can develop into a chronic, multisystemic disorder. Decorin may mediate the adherence of B. burgdorferi to collagen fibers in skin and other tissues . B. burgdorferi decorin binding protein A (DbpA) facilitates this binding .
Probab=22.39 E-value=13 Score=12.49 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 912789999999999973677
Q T0532 1 MKRINKYISLLLATALLASCD 21 (506)
Q Consensus 1 MKki~~~i~~~~~~~~~tSC~ 21 (506)
||-.+.++.+.+++.++.+|.
T Consensus 1 ~Ky~Knll~ltLlv~LL~aCg 21 (166)
T PF02352_consen 1 IKYNKNLLKLTLLVSLLIACG 21 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHCC
T ss_conf 915688999999999999815
No 35
>PF05590 DUF769: Xylella fastidiosa protein of unknown function (DUF769); InterPro: IPR008487 This family consists of several uncharacterised hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=22.06 E-value=13 Score=12.45 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=18.1
Q ss_pred EEECCCCHHHCCHHHHHHHHHHH
Q ss_conf 63177203441678999999974
Q T0532 469 RWMYPKSESDYNLEHQNEALERQ 491 (506)
Q Consensus 469 R~~yp~~e~~~N~~~~~~a~~~~ 491 (506)
-+.+=.+|...|.+.+|-|-..+
T Consensus 250 ~~nf~eSer~tdtEiyqrArqLm 272 (284)
T PF05590_consen 250 NVNFFESERQTDTEIYQRARQLM 272 (284)
T ss_pred EEEEEHHHHCCCHHHHHHHHHHC
T ss_conf 88874255300479999999871
No 36
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli . AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant . AsmA may have a role in LPS biogenesis .
Probab=21.33 E-value=14 Score=12.36 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=7.3
Q ss_pred CCHHHHHHHHH
Q ss_conf 91278999999
Q T0532 1 MKRINKYISLL 11 (506)
Q Consensus 1 MKki~~~i~~~ 11 (506)
|||+.|+++++
T Consensus 1 Mkk~lkil~~~ 11 (604)
T PF05170_consen 1 MKKLLKILLII 11 (604)
T ss_pred CCHHHHHHHHH
T ss_conf 94799999999
No 37
>PF11777 DUF3316: Protein of unknown function (DUF3316)
Probab=21.15 E-value=14 Score=12.34 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9127899999999
Q T0532 1 MKRINKYISLLLA 13 (506)
Q Consensus 1 MKki~~~i~~~~~ 13 (506)
|||++.+.+++++
T Consensus 1 MKkl~ll~~~l~~ 13 (114)
T PF11777_consen 1 MKKLILLASLLLL 13 (114)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9049999999998
No 38
>PF09710 Trep_dent_lipo: Treponema clustered lipoprotein (Trep_dent_lipo)
Probab=21.08 E-value=10 Score=13.12 Aligned_cols=16 Identities=50% Similarity=0.744 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999736773
Q T0532 7 YISLLLATALLASCDK 22 (506)
Q Consensus 7 ~i~~~~~~~~~tSC~d 22 (506)
+|.++++++++-||++
T Consensus 5 lIfILiLA~lLFSCSK 20 (394)
T PF09710_consen 5 LIFILILAALLFSCSK 20 (394)
T ss_pred EHHHHHHHHHHHHHHH
T ss_conf 6179999999964136
No 39
>PF11853 DUF3373: Protein of unknown function (DUF3373)
Probab=20.42 E-value=14 Score=12.25 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=12.9
Q ss_pred CCEEHHHHHHHHHHHHHHHHHC
Q ss_conf 8521152689999999999857
Q T0532 338 EPVVRLGYAEQNFILAEAAVRG 359 (506)
Q Consensus 338 ~~~~~~r~AEv~ll~AEA~~r~ 359 (506)
..|+-|++||=-++-+-.+.||
T Consensus 398 KYW~sft~aeDd~~gSKlatRG 419 (489)
T PF11853_consen 398 KYWRSFTPAEDDMIGSKLATRG 419 (489)
T ss_pred CCEEECCCCCCCHHHCEEEECC
T ss_conf 4226436456650111221045
Done!