Query T0532 YP_210662.1, Bacteroides fragilis nctc 9343, 506 residues
Match_columns 506
No_of_seqs 241 out of 2874
Neff 9.9
Searched_HMMs 15564
Date Fri May 21 18:04:35 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0532.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0532.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ejna1 a.118.8.6 (A:32-490) U 100.0 0 0 559.1 32.4 452 35-506 1-457 (459)
2 d3cgha1 a.118.8.6 (A:31-537) U 100.0 0 0 529.7 37.2 457 30-506 1-505 (507)
3 d3ckca1 a.118.8.6 (A:42-551) S 100.0 0 0 295.5 22.1 355 81-484 77-504 (510)
4 d1hz4a_ a.118.8.2 (A:) Transcr 26.0 15 0.00093 12.9 3.4 34 343-376 288-321 (366)
5 d1n08a_ b.43.5.1 (A:) Riboflav 23.0 17 0.0011 12.6 3.4 10 437-446 141-150 (154)
6 d1dxsa_ a.60.1.2 (A:) C-termin 21.3 7 0.00045 14.7 -0.9 34 416-449 2-43 (57)
7 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 19.9 9.6 0.00062 13.9 -0.5 33 413-446 74-106 (167)
8 d2eyqa6 d.315.1.1 (A:990-1147) 18.7 21 0.0013 12.0 1.3 15 346-360 48-62 (158)
9 d1ihga1 a.118.8.1 (A:197-365) 17.1 22 0.0014 11.8 3.4 29 346-374 111-139 (169)
10 d2eyqa6 d.315.1.1 (A:990-1147) 17.0 23 0.0015 11.8 1.3 10 125-134 56-65 (158)
No 1
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]}
Probab=100.00 E-value=0 Score=559.06 Aligned_cols=452 Identities=33% Similarity=0.602 Sum_probs=351.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 34688999999998632001220023435331112566555653665444177899999999999973156679999999
Q T0532 35 KVTSSLLATGLLLDITSSSASKSFIYDELLAKQMAWGESMEDYQYNVFGRSGFGGYTTLINAQKMVESVSDDNVNAYDGL 114 (506)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~Y~~i~~~n~~i~~~~~~~~~~~~ge 114 (506)
++.|+++|+.+..+......... +..+++....+.....++.+...+..+|+.|++++.+|+..+++++++|+||
T Consensus 1 ~~~p~~~~~~~~~~~~~~g~~~~-----y~~~~~~~~~~~~~~~y~~~~~~~~~~y~~l~~~~~~i~~~~~~~~~~y~ge 75 (459)
T d3ejna1 1 QTHPKLLLTQICMNAFKRGTDGM-----YATKKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEEAERVNAPVYTAL 75 (459)
T ss_dssp CCCTHHHHHHHHHHHHCCCSGGG-----TTTTSEEESSSCCTTTTTCCCBCCCTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98788999999861662476065-----7767510367877400011147889999999999999986432457999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 9999999999999861898642255776-4445678788899999999999999984455566-5554224775899999
Q T0532 115 AHFIKAYKIFYMSMEMGDLPYEEALQGE-LGLVRPKYNTQKEVMNFILSDLETAYELFSTAKD-FDGDPILGGSISKWKK 192 (506)
Q Consensus 115 A~~lRA~~y~~L~~~yG~VP~~e~~~~~-~~~~~p~~~s~~evy~~I~~dL~~A~~~L~~~~~-~~~~~~~~g~~~kw~~ 192 (506)
|+|||||+||.|+++||||||+++..+. .....|+|+|++|||++|++||++|++.|+.... ...+.+++|++.||++
T Consensus 76 A~flRA~~yf~Lv~~fGdVPy~~~~~~~~~~~~~p~~ds~~eVY~~I~~DL~~Ai~~L~~~~~~~~~~~~~~g~~~k~~~ 155 (459)
T d3ejna1 76 TKFFRAYYFYELTLRFGDIPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILANDASVIDGDIIYNGNSTQWRK 155 (459)
T ss_dssp HHHHHHHHHHHHHHHHSSBCCTTTTC------CCCCCBCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
T ss_conf 99999999999999858943131356776543466778799999999999999998532244453301000450899999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999999862464689999999999987438842462201255201577620101133346655420048999875
Q T0532 193 ATTAFQLKVLMHLSKKESDADLKVKERFARIVASGSLMESNEDNLQMKYADKANTVYPFHNTNTKHAGYAMLSTMLIDKF 272 (506)
Q Consensus 193 ~A~aL~ar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 272 (506)
+|++|++|++|++.++........++.....+..++.+.+.++++.+.+.......++... ..+.....+..+++.+
T Consensus 156 ~a~~L~~r~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~ 232 (459)
T d3ejna1 156 LINSFRLKVLMTLSNHTTVGNINIASEFKNIATNSPLMNSLADNGQLVYLDQQGNRYPQFN---AQWSGYYMDDTFIQRM 232 (459)
T ss_dssp HHHHHHHHHHHHTTTCSEETTEEHHHHHHHHHHHSCCCCSGGGCEEECCCSSTTCSCTTTT---CCCTTEEEBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCHHHHHH
T ss_conf 8878999999997530004689999999999872786665012034401467777665214---5556765540677763
Q ss_pred HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 13688502555641665545664456654314554665555455543233334567655778788852115268999999
Q T0532 273 KATGDIRMFYYAKPAKAKLNEGVTADSWDAYIGTDPSLPFEQIEKAYATEQYSGFNARYTDYPSGEPVVRLGYAEQNFIL 352 (506)
Q Consensus 273 ~~~~DpR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AEv~ll~ 352 (506)
.+.+|||+..++.+................+.+.+.+..............+..........+...|+++||||||+||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ryAEv~Li~ 312 (459)
T d3ejna1 233 RERRDPRLFIFSAQTNKGKTEGKPIDDFSSYEGGDPAAPYSDAIIKVSEGTISPINDRFRTDPIVEPTMLMGYAELQQIL 312 (459)
T ss_dssp HHTTCTTHHHHBCCCHHHHHTTCCTTCGGGCCCBCTTSCSCCHHHHHC---CCCBCGGGTSCSSCCCEEEECHHHHHHHH
T ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
T ss_conf 26789741003455665444577566533100687676556654235664115766555667787876875399988878
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 999985789823799999999999997302331000013455554456776652144335--776088999999999999
Q T0532 353 AEAAVRGWISGDASAYYKKAIRAHMEFIASNTPDEEVYHHGHPITEEAIAAFLETPAIQL--SGEKEADIEKILTQRYLA 430 (506)
Q Consensus 353 AEA~~r~g~~~~A~~~y~~gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~le~I~~Qk~ia 430 (506)
|||++|+|..++|+++|++||++||++|+....+...+ .....+..+...+.+.+ +++.+++|++|++|||||
T Consensus 313 AEA~~~~g~~~~A~~~~~~gi~as~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~qk~i~ 387 (459)
T d3ejna1 313 AEAVVRGWISGNAQTYYEKGIRASFSFYETHAKDYAGY-----LNENAVAQYLKEPLVDFTQASGTEEQIERIIMQKYLV 387 (459)
T ss_dssp HHHHHTTSSCSCHHHHHHHHHHHHHHHHHHHSGGGGGG-----SSHHHHHHHTTSTTTCGGGCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999569941099999999999998745454321111-----1222024443055443254668699999999999999
Q ss_pred HCCCCCHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 63687114665110127870034567777777775315631772034416789999999742-88866666445349
Q T0532 431 SFMQHPYDVYYDYRRTGYPVLPINPATNRNTMNDRLPMRWMYPKSESDYNLEHQNEALERQF-GGVDDVNKLMWILQ 506 (506)
Q Consensus 431 ~~~~~~~e~w~d~RRtgyP~l~~~~~~~~~~~~~~~p~R~~yp~~e~~~N~~~~~~a~~~~~-~g~d~~~~~~Ww~~ 506 (506)
+|+++++|+|+|+||||||.+..+ .++.+|+||+||++|++.|++|+++|+++|. +|+|.+++||||.|
T Consensus 388 ~~~~g~~e~w~d~RRtg~P~~~~~-------~~~~~p~R~~yp~~E~~~N~~n~~~a~~~~~~~g~d~~~~~~wWdk 457 (459)
T d3ejna1 388 TFYQGNWDSFYEQLRTGYPDFRRP-------AGTEIPKRWMYPQGEYDNNGTNVETAITRQFGAGNDKINQATWWQK 457 (459)
T ss_dssp CSSSSTTHHHHHHHHHCCSCCCCC-------TTCCCCCCCBCCHHHHHHSHHHHHHHHHHHHSTTCCCTTCCCGGGS
T ss_pred HCCCCCHHHHHHHHHCCCCCCCCC-------CCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEC
T ss_conf 757985418999986199877488-------8887734532582066449999999999864589864578264447
No 2
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=100.00 E-value=0 Score=529.72 Aligned_cols=457 Identities=17% Similarity=0.247 Sum_probs=312.5
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHHHCCCCCH--------HHHHHHHHHCCCCCC-----CCCCCCC--CCCCHHHHHHHHH
Q ss_conf 7867634688-9999999986320012200--------234353311125665-----5565366--5444177899999
Q T0532 30 PDATTKVTSS-LLATGLLLDITSSSASKSF--------IYDELLAKQMAWGES-----MEDYQYN--VFGRSGFGGYTTL 93 (506)
Q Consensus 30 p~~~t~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~w~~~Y~~i 93 (506)
|+.++.++++ ..+.+++.++......... +..+.+++++..... ...++.+ .....|...|..+
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~~ 80 (507)
T d3cgha1 1 PYEAPDLSADGYALGSAMNNLAGCVVSPDVNTAQFTDCLLGGPLGGYFADSNAGFTETISNFNPKDDWSRVFLKSDKIIP 80 (507)
T ss_dssp CCCCCCTTSSHHHHHHHHHHHHTTTSCSSHHHHHHHHTTTHHHHTTSEEECCTTCCSCTTTTCCCHHHHTHHHHCTTTHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98966577661068789877887435877547899988634763112256666756564510067507765557678999
Q ss_pred HHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999---7315667999999999999999999998618986422557764445678788899999999999999984
Q T0532 94 INAQKMV---ESVSDDNVNAYDGLAHFIKAYKIFYMSMEMGDLPYEEALQGELGLVRPKYNTQKEVMNFILSDLETAYEL 170 (506)
Q Consensus 94 ~~~n~~i---~~~~~~~~~~~~geA~~lRA~~y~~L~~~yG~VP~~e~~~~~~~~~~p~~~s~~evy~~I~~dL~~A~~~ 170 (506)
..++.++ +..++.++++++|||+|||||+||.|+|+||||||+++... +...|+|++++|||++|++||++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~a~A~~lrA~~y~~L~d~fGdIPy~~a~~~--~~~~~~~ds~~eVY~~Ii~DL~~Ai~~ 158 (507)
T d3cgha1 81 TLYSNLTQVKLVSQNTNDPVPYAIAQVIKVAAMHRVTDAFGPIPYSQIGAN--GEIATPYDSQEVTYNTFFDELNAAIAT 158 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSBCCTTCCTT--CCCCSCCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999875235654889999999999999999998099634305778--776899899999999999999999986
Q ss_pred CCCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCCCC
Q ss_conf 455566----5554224775899999999999999998624646899999999999874388424622012552015776
Q T0532 171 FSTAKD----FDGDPILGGSISKWKKATTAFQLKVLMHLSKKESDADLKVKERFARIVASGSLMESNEDNLQMKYADKAN 246 (506)
Q Consensus 171 L~~~~~----~~~~~~~~g~~~kw~~~A~aL~ar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (506)
|+.... ...|.+|+|++.||+++|++|+||++|++.++....+.+.++.+ .....+++++++++++.+.+.....
T Consensus 159 L~~~~~~~~~~~~D~~y~G~~~~w~~~A~~L~ar~~l~~~~~~~~~A~~~a~~~-i~~~~~~l~~s~~d~~~~~~~~~~~ 237 (507)
T d3cgha1 159 LNENSNEQLVPTADYIYKGDVKKWIRFANSLKLRLAIRIAYANPVKAQQMAEEA-VNPANGGVIESNADNATWNYFETSQ 237 (507)
T ss_dssp HHHTTTCBCCGGGCTTTTTBHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHH-HCGGGTCCCCSGGGCEEECCCTTSC
T ss_pred HHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCCC
T ss_conf 311577654320124407619999999999999999885301378999999986-5401356313543320231147878
Q ss_pred CCCCCC------------CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 201011------------33346655420048999875136885025556416655456644566543145546655554
Q T0532 247 TVYPFH------------NTNTKHAGYAMLSTMLIDKFKATGDIRMFYYAKPAKAKLNEGVTADSWDAYIGTDPSLPFEQ 314 (506)
Q Consensus 247 ~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~DpR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (506)
...... ......+....++..+++.+.+.+|||+..++.+...... .+.+...+.....
T Consensus 238 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpr~~~~~~~~~~~~~---------~~~g~~~~~~~~~ 308 (507)
T d3cgha1 238 NPIYVATRYNQVQTSDHGGVPCLTGGDTHAAADIICYMNGYKDNRREKFFTKSEWAGQ---------DYVGMRRGIVIPE 308 (507)
T ss_dssp CHHHHHHHTTCCCGGGTTTSCCCSCSSEEEBHHHHHHHHHTTCTTHHHHBCCCCSTTC---------SCCCBCSSSCCCC
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCC---------CCCCCCCCCCCCC
T ss_conf 8303432124345566555423466554103168888505788414321213666765---------3012102335665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC
Q ss_conf 5554323333456765577878885211526899999999998578--98237999999999999973023310000134
Q T0532 315 IEKAYATEQYSGFNARYTDYPSGEPVVRLGYAEQNFILAEAAVRGW--ISGDASAYYKKAIRAHMEFIASNTPDEEVYHH 392 (506)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AEv~ll~AEA~~r~g--~~~~A~~~y~~gi~~s~~~~~~~~~~~~~~~~ 392 (506)
. .....+++ ........|+++||||||+||+|||++|+| .+++|+++|++||++||++|+...........
T Consensus 309 ~--~~~~~~~s-----~~~~~~~~~~~i~ryAEv~Li~AEA~~r~g~~~~~~A~~~y~~gi~as~~~~~~~~~~~~~~~~ 381 (507)
T d3cgha1 309 L--KTTGHKYS-----GVNIAPTSPLYWMNAAEVAFLRAEGQAVFNFSMGGTAESFYNQGIRLSFEQWGADGVEDYLKDD 381 (507)
T ss_dssp T--TTTGGGSC-----CBCCCTTCCEEEECHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHHHTCCCHHHHHTCC
T ss_pred C--CCCCCCCC-----CCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 5--54466567-----6555777874687699987889999873078765779999999999999874531056675303
Q ss_pred C-------CCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHCCCCCCCCCCCCC--CCC
Q ss_conf 5-------555445677665214433--57760889999999999996368711466511012787003456777--777
Q T0532 393 G-------HPITEEAIAAFLETPAIQ--LSGEKEADIEKILTQRYLASFMQHPYDVYYDYRRTGYPVLPINPATN--RNT 461 (506)
Q Consensus 393 ~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~le~I~~Qk~ia~~~~~~~e~w~d~RRtgyP~l~~~~~~~--~~~ 461 (506)
. .+.....+..+.....+. .+++.+++||+|++|||||+|++ ++|+|+|+||||||.+.+.+... ...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~L~~I~~Qk~ia~~~~-g~e~w~d~RRtg~p~~~~~~~~~~~~~~ 460 (507)
T d3cgha1 382 VNKPTAYTDPAGTNTYQNALSNITIKWNDSADKEEKQERIIVQKWIANWQL-GNEAWADFRRTGYPKLIPVKENKSGGVV 460 (507)
T ss_dssp SCCCCCBCCTTSSSCBCSCSCCCCSSCCTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHCCSCCCCCSSCCSTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 566321367421135665531023335456786999999999999997687-0558999880399755677658887756
Q ss_pred CCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 777531563177203441678999999974288866666445349
Q T0532 462 MNDRLPMRWMYPKSESDYNLEHQNEALERQFGGVDDVNKLMWILQ 506 (506)
Q Consensus 462 ~~~~~p~R~~yp~~e~~~N~~~~~~a~~~~~~g~d~~~~~~Ww~~ 506 (506)
..+.+|+||+||++|++.|++|+++|++++.+|+|.+++||||.|
T Consensus 461 ~~~~~p~R~~Yp~~E~~~N~~n~~~a~~~~~~g~d~~~~~~wWd~ 505 (507)
T d3cgha1 461 DSEKGARRMPYPLDEFVSNKANVEYAIANYLHGADNMATDVWWAS 505 (507)
T ss_dssp CTTTCCCSCCCCTTHHHHSHHHHHHHHHHTSCSCSSTTSCCTTCC
T ss_pred CCCCCCEEEECCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 678862575467768750999999999984189975678686317
No 3
>d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=100.00 E-value=0 Score=295.45 Aligned_cols=355 Identities=13% Similarity=0.125 Sum_probs=196.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 54441778999999999999731---566799999999999999999999861898642255776444567878889999
Q T0532 81 VFGRSGFGGYTTLINAQKMVESV---SDDNVNAYDGLAHFIKAYKIFYMSMEMGDLPYEEALQGELGLVRPKYNTQKEVM 157 (506)
Q Consensus 81 ~~~~~w~~~Y~~i~~~n~~i~~~---~~~~~~~~~geA~~lRA~~y~~L~~~yG~VP~~e~~~~~~~~~~p~~~s~~evy 157 (506)
.+...|..+|..|.+||.+|+++ +++++++++|||+|||||+||.|+++||+||+.+... ...++|.+++|||
T Consensus 77 ~~~~~w~~~Y~~I~~aN~~i~~i~~~~~~~~~~~~aEA~flRA~~yf~L~~~yG~VPl~~~~~----~~~~~r~s~~ev~ 152 (510)
T d3ckca1 77 RTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFS----NDLPVEKKGTELY 152 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSEEEECSSCS----SSCCEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCCHHHHH
T ss_conf 889999999999999999998164899999999999999999999999999809258993466----5567868999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHC-CCCCCCCH
Q ss_conf 999999999998445556655542247758999999999999999986246--468999999999998743-88424622
Q T0532 158 NFILSDLETAYELFSTAKDFDGDPILGGSISKWKKATTAFQLKVLMHLSKK--ESDADLKVKERFARIVAS-GSLMESNE 234 (506)
Q Consensus 158 ~~I~~dL~~A~~~L~~~~~~~~~~~~~g~~~kw~~~A~aL~ar~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (506)
++|++||++|+++||..... ..|+++|| +|.+|++|+||+...+ ..+.+ .+++...+++.+ ..+.....
T Consensus 153 ~~I~~dL~~A~~~Lp~~~~~-----~~gR~tk~--aA~allarvyL~~~~~~~~~~~~-~A~~~a~~vi~~gy~L~~~y~ 224 (510)
T d3ckca1 153 TYIQNELNEIEADMYEPRQA-----PFGRADKA--ANWLLRARLYLNAGVYTGQTDYA-KAEEYASKVIGSAYKLCTNYS 224 (510)
T ss_dssp HHHHHHHHHHGGGSCCTTCS-----CTTSCCHH--HHHHHHHHHHHTHHHHHSSCCHH-HHHHHHHHHHTSSCCCCSSGG
T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCCCHH--HHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999998625575555-----27724599--99999999999865422406579-999999988650466767577
Q ss_pred HHEEEEECCCCC--CCCCCC----------------------------CCCCCCCCCCCHHHHHHHHHHCC-CCCEE-EE
Q ss_conf 012552015776--201011----------------------------33346655420048999875136-88502-55
Q T0532 235 DNLQMKYADKAN--TVYPFH----------------------------NTNTKHAGYAMLSTMLIDKFKAT-GDIRM-FY 282 (506)
Q Consensus 235 ~~~~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~~~s~~~~~~~~~~-~DpR~-~~ 282 (506)
+.+......... .+..+. .....+++...++..+++.+... .+... ..
T Consensus 225 ~~f~~~n~~~~~~~~E~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (510)
T d3ckca1 225 ELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPA 304 (510)
T ss_dssp GGGSTTTTTCHHHHTTEEEEECCCHHHHGGGBHHHHHHHTTCCTTCTTCSSSCCCCCEEECHHHHTTTCSSGGGSCCCCT
T ss_pred HHHHHCCCCCHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 76533155761003103775203676655667753211014455677777778866656738899988634577666666
Q ss_pred -EEECCCCC-----C-----CCCC--------C-CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf -56416655-----4-----5664--------4-56654314554665------5554555432333345676----557
Q T0532 283 -YAKPAKAK-----L-----NEGV--------T-ADSWDAYIGTDPSL------PFEQIEKAYATEQYSGFNA----RYT 332 (506)
Q Consensus 283 -~~~~~~~~-----~-----~~~~--------~-~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~----~~~ 332 (506)
...+.... . .... . ......+.+...+. .......++...++..... ...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~ 384 (510)
T d3ckca1 305 DVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSH 384 (510)
T ss_dssp TSCCCSSSCCSHHHHHHHHHHTTCSHHHHHHHHTCTTCCEECSSTTSCCCSSCSSCCSGGGSCEECCSCSSCTTCCCCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 54465555566543343333456433430002687640353035777653334655666667421013444677654567
Q ss_pred CCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 78788852115268999999999985789823799999999999997302331000013455554456776652144335
Q T0532 333 DYPSGEPVVRLGYAEQNFILAEAAVRGWISGDASAYYKKAIRAHMEFIASNTPDEEVYHHGHPITEEAIAAFLETPAIQL 412 (506)
Q Consensus 333 ~~~~~~~~~~~r~AEv~ll~AEA~~r~g~~~~A~~~y~~gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (506)
......++++||+||||||+|||+++.|. +|.+++|+ ||.- .+ .+..
T Consensus 385 ~~~~~~~~~i~R~aEv~L~~AEA~~~~g~--~A~~~lN~-VR~R---Ag-------------------------~~~~-- 431 (510)
T d3ckca1 385 ATYPDTDIPLFRLAEAYLTRAEAIFRQGG--DATGDINE-LRKR---AN-------------------------CTRK-- 431 (510)
T ss_dssp SSSCCCCEEEEETHHHHHHHHHHHHHTTC--CCHHHHHH-HHHH---TT-------------------------CSSC--
T ss_pred CCCCCCEEEEEEHHHHHHHHHHHHHHCCC--HHHHHHHH-HHHH---CC-------------------------CCCC--
T ss_conf 76676338996489999999999864065--89999999-9997---39-------------------------9967--
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHCCCCCCCCCC-----CCCCCCCCCCCCEEEECCCCHHHCCHHHH
Q ss_conf 7760889999999999996368711466511012787003456-----77777777753156317720344167899
Q T0532 413 SGEKEADIEKILTQRYLASFMQHPYDVYYDYRRTGYPVLPINP-----ATNRNTMNDRLPMRWMYPKSESDYNLEHQ 484 (506)
Q Consensus 413 ~~~~~~~le~I~~Qk~ia~~~~~~~e~w~d~RRtgyP~l~~~~-----~~~~~~~~~~~p~R~~yp~~e~~~N~~~~ 484 (506)
+....++.|+.||++||++|++ +|+|+||.|...-.... ...........-.-+|+|++|++.||+..
T Consensus 432 --~~~~~~~~I~~ER~~EL~~Eg~--R~~DL~Rwg~~~~~~~~~~~~~~~~~~~~~~~~~~l~PIP~~ei~~N~~l~ 504 (510)
T d3ckca1 432 --VQTVTEQELIDEWAREFYLEGR--RRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMS 504 (510)
T ss_dssp --CSSCCHHHHHHHHHHHHTTSSC--HHHHHHHTTCSSSTTCCCTTGGGCTTCCCCCGGGGSCCCCHHHHHHCTTCC
T ss_pred --CCHHHHHHHHHHHHHHHHCCCC--HHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCCC
T ss_conf --7578999999999999871554--799997548254325023456765567777887169578899993199987
No 4
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=26.03 E-value=15 Score=12.90 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5268999999999985789823799999999999
Q T0532 343 LGYAEQNFILAEAAVRGWISGDASAYYKKAIRAH 376 (506)
Q Consensus 343 ~r~AEv~ll~AEA~~r~g~~~~A~~~y~~gi~~s 376 (506)
...++.++.+|++..+.|+...|..+++++++.+
T Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 288 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 4799999999999998789999999999999976
No 5
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=22.98 E-value=17 Score=12.56 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=5.4
Q ss_pred HHHHHHCHHC
Q ss_conf 1466511012
Q T0532 437 YDVYYDYRRT 446 (506)
Q Consensus 437 ~e~w~d~RRt 446 (506)
.|+|..+|+-
T Consensus 141 ~~~~~~~~~~ 150 (154)
T d1n08a_ 141 RPSYSSYKKD 150 (154)
T ss_dssp SHHHHGGGGC
T ss_pred CHHHHHHCCC
T ss_conf 8157764207
No 6
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=7 Score=14.74 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH--------HHHCHHCCCC
Q ss_conf 088999999999999636871146--------6511012787
Q T0532 416 KEADIEKILTQRYLASFMQHPYDV--------YYDYRRTGYP 449 (506)
Q Consensus 416 ~~~~le~I~~Qk~ia~~~~~~~e~--------w~d~RRtgyP 449 (506)
-++.|+.|..++|+..|..+|++. +-|+++.|.|
T Consensus 2 v~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~ 43 (57)
T d1dxsa_ 2 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP 43 (57)
T ss_dssp HHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 899997887598899999856894999988209899886998
No 7
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.90 E-value=9.6 Score=13.94 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHC
Q ss_conf 7760889999999999996368711466511012
Q T0532 413 SGEKEADIEKILTQRYLASFMQHPYDVYYDYRRT 446 (506)
Q Consensus 413 ~~~~~~~le~I~~Qk~ia~~~~~~~e~w~d~RRt 446 (506)
.--..+.+|+|+.+|+..++++.+ |.+.-+||-
T Consensus 74 ~ikq~Deie~iL~~kf~~Fl~~ra-e~F~ILRrk 106 (167)
T d1k8kf_ 74 AVKQADEIEKILCHKFMRFMMMRA-ENFFILRRK 106 (167)
T ss_dssp ECCCCSHHHHHHHHHHHHHHHHTT-TTSTTBCSS
T ss_pred EECCCCHHHHHHHHHHHHHHHHHH-HHCEEEEEC
T ss_conf 761516599999999999999755-301465516
No 8
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.71 E-value=21 Score=12.02 Aligned_cols=15 Identities=27% Similarity=-0.110 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 899999999998578
Q T0532 346 AEQNFILAEAAVRGW 360 (506)
Q Consensus 346 AEv~ll~AEA~~r~g 360 (506)
+|+.=++.|-.-|=|
T Consensus 48 ~el~~i~~El~DRFG 62 (158)
T d2eyqa6 48 NELEEIKVELIDRFG 62 (158)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 899999999997759
No 9
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.12 E-value=22 Score=11.80 Aligned_cols=29 Identities=21% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999999857898237999999999
Q T0532 346 AEQNFILAEAAVRGWISGDASAYYKKAIR 374 (506)
Q Consensus 346 AEv~ll~AEA~~r~g~~~~A~~~y~~gi~ 374 (506)
++.++.+|.|..+.|+...|...|+++++
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 36777699999980479999999999998
No 10
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.96 E-value=23 Score=11.78 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHCCCC
Q ss_conf 9998618986
Q T0532 125 YMSMEMGDLP 134 (506)
Q Consensus 125 ~L~~~yG~VP 134 (506)
.|.|.||++|
T Consensus 56 El~DRFG~lP 65 (158)
T d2eyqa6 56 ELIDRFGLLP 65 (158)
T ss_dssp HHHHHHCSCC
T ss_pred HHHHHCCCCC
T ss_conf 9998538976
Done!