Query T0533 3MWB, unknown, 313 residues
Match_columns 313
No_of_seqs 123 out of 1159
Neff 6.2
Searched_HMMs 22458
Date Fri May 21 18:05:49 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0533.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0533.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 0 0 644.3 33.0 275 1-284 1-282 (283)
2 3luy_A Probable chorismate mut 100.0 0 0 632.3 27.5 287 1-295 1-301 (329)
3 2qmw_A PDT, prephenate dehydra 100.0 0 0 609.9 29.8 265 6-281 3-267 (267)
4 1phz_A Protein (phenylalanine 99.8 2.6E-20 1.2E-24 147.6 8.2 104 160-273 1-104 (429)
5 2f1f_A Acetolactate synthase i 97.3 0.0019 8.6E-08 40.5 9.7 74 201-278 3-76 (164)
6 2ko1_A CTR148A, GTP pyrophosph 97.3 0.001 4.6E-08 42.2 8.2 72 200-276 4-75 (88)
7 2gbb_A Putative chorismate mut 97.0 2E-06 8.7E-11 59.5 -8.0 67 13-80 86-155 (156)
8 2pc6_A Probable acetolactate s 97.0 0.0056 2.5E-07 37.6 9.5 74 201-278 4-77 (165)
9 1u8s_A Glycine cleavage system 96.8 0.017 7.7E-07 34.4 10.6 66 204-270 96-168 (192)
10 2nyi_A Unknown protein; protei 96.8 0.0024 1.1E-07 39.9 6.2 68 209-276 100-172 (195)
11 2fgc_A Acetolactate synthase, 96.8 0.011 4.7E-07 35.8 9.3 73 201-277 29-101 (193)
12 1zpv_A ACT domain protein; str 96.4 0.018 7.8E-07 34.4 8.5 69 200-270 4-72 (91)
13 3mtj_A Homoserine dehydrogenas 96.1 0.022 9.7E-07 33.8 7.6 67 204-272 362-428 (444)
14 2f06_A Conserved hypothetical 95.7 0.043 1.9E-06 31.9 7.6 66 202-278 72-137 (144)
15 1ygy_A PGDH, D-3-phosphoglycer 95.5 0.13 5.6E-06 29.0 14.9 113 158-277 387-526 (529)
16 1y7p_A Hypothetical protein AF 95.3 0.053 2.4E-06 31.3 6.9 66 210-280 12-79 (223)
17 3hn0_A Nitrate transport prote 95.0 0.18 8E-06 28.0 18.2 138 5-155 5-149 (283)
18 1o63_A ATP phosphoribosyltrans 94.7 0.21 9.5E-06 27.5 10.2 158 5-186 1-176 (219)
19 2f06_A Conserved hypothetical 92.9 0.37 1.6E-05 26.0 7.2 69 204-279 9-77 (144)
20 1tdj_A Biosynthetic threonine 89.4 0.57 2.6E-05 24.8 5.3 206 49-275 177-407 (514)
21 3k5p_A D-3-phosphoglycerate de 88.6 1.2 5.2E-05 22.8 10.6 69 202-276 344-412 (416)
22 2d00_A V-type ATP synthase sub 87.3 0.48 2.1E-05 25.3 3.8 73 4-83 1-76 (109)
23 2v25_A Major cell-binding fact 87.2 1.4 6.3E-05 22.3 6.9 117 30-162 81-204 (259)
24 3h7m_A Sensor protein; histidi 86.9 1.5 6.6E-05 22.2 10.2 117 26-162 47-169 (234)
25 1sc6_A PGDH, D-3-phosphoglycer 86.4 1.5 6.9E-05 22.0 8.2 69 202-276 332-400 (404)
26 2vd2_A ATP phosphoribosyltrans 85.5 1.7 7.7E-05 21.7 9.1 124 3-144 1-149 (214)
27 3gxa_A Outer membrane lipoprot 84.6 1.7 7.8E-05 21.7 5.6 92 3-105 21-119 (275)
28 2re1_A Aspartokinase, alpha an 84.5 1.3 5.6E-05 22.6 4.8 50 210-270 114-163 (167)
29 2abw_A PDX2 protein, glutamina 84.1 1.4 6.1E-05 22.4 4.8 49 4-58 1-50 (227)
30 1xs5_A 29 kDa protein, membran 81.9 2.4 0.00011 20.8 8.6 92 5-105 3-98 (241)
31 2dt9_A Aspartokinase; protein- 80.8 2.6 0.00012 20.6 9.6 59 201-270 97-155 (167)
32 1lst_A Lysine, arginine, ornit 79.9 2.8 0.00013 20.4 6.0 104 31-149 44-155 (239)
33 1ve4_A ATP phosphoribosyltrans 77.6 3.3 0.00015 19.9 11.3 146 6-171 5-170 (206)
34 2cdq_A Aspartokinase; aspartat 75.9 3.7 0.00016 19.6 8.3 135 126-271 266-412 (510)
35 2j0w_A Lysine-sensitive aspart 75.8 3.7 0.00017 19.6 6.2 136 126-271 234-378 (449)
36 3e4r_A Nitrate transport prote 74.0 4.1 0.00018 19.3 17.5 142 5-158 29-187 (324)
37 1xt8_A Putative amino-acid tra 73.9 4.1 0.00018 19.3 11.3 104 31-149 87-195 (292)
38 3del_B Arginine binding protei 72.9 4.4 0.0002 19.2 8.9 117 30-164 50-171 (242)
39 3kzg_A Arginine 3RD transport 72.9 4.4 0.0002 19.2 6.0 115 31-163 44-163 (237)
40 1z7m_E ATP phosphoribosyltrans 72.8 4.4 0.0002 19.2 13.3 157 6-186 1-183 (208)
41 2dtj_A Aspartokinase; protein- 72.3 4.5 0.0002 19.1 6.9 134 107-270 22-155 (178)
42 3g41_A Amino acid ABC transpor 71.8 4.6 0.00021 19.0 5.6 123 11-150 25-160 (246)
43 1p99_A Hypothetical protein PG 69.0 5.3 0.00024 18.6 9.7 92 4-105 38-134 (295)
44 2pvu_A ARTJ; basic amino acid 68.0 5.6 0.00025 18.5 6.4 105 30-149 80-190 (272)
45 2x26_A Periplasmic aliphatic s 64.9 6.4 0.00029 18.1 18.9 134 5-149 3-153 (308)
46 2iee_A ORF2, probable ABC tran 61.9 7.3 0.00032 17.8 5.7 110 24-150 58-175 (271)
47 3mah_A Aspartokinase; aspartat 56.8 8.9 0.00039 17.2 5.2 21 211-231 100-120 (157)
48 3kbr_A Cyclohexadienyl dehydra 56.6 9 0.0004 17.2 4.5 117 30-162 54-177 (239)
49 2q88_A EHUB, putative ABC tran 55.1 9.5 0.00042 17.1 6.3 128 10-150 26-168 (257)
50 1wdn_A GLNBP, glutamine bindin 54.2 9.8 0.00044 17.0 11.7 105 30-149 41-151 (226)
51 3fzv_A Probable transcriptiona 52.8 10 0.00046 16.8 5.3 35 15-60 18-52 (306)
52 2de3_A Dibenzothiophene desulf 50.8 11 0.00049 16.6 4.5 87 7-101 20-110 (365)
53 3kux_A Putative oxidoreductase 50.6 11 0.0005 16.6 6.6 19 1-20 1-20 (352)
54 3m05_A Uncharacterized protein 50.4 11 0.0005 16.6 8.1 65 212-281 14-78 (114)
55 2vd3_A ATP phosphoribosyltrans 48.8 12 0.00053 16.4 11.5 244 3-286 1-288 (289)
56 3lou_A Formyltetrahydrofolate 48.2 12 0.00054 16.4 7.6 23 260-282 160-182 (292)
57 2f5x_A BUGD; periplasmic bindi 46.3 13 0.00058 16.2 9.0 140 6-151 18-188 (312)
58 3fdi_A Uncharacterized protein 45.6 7.8 0.00035 17.6 1.9 35 1-35 1-35 (201)
59 3b50_A Sialic acid-binding per 45.5 13 0.0006 16.1 14.7 220 4-231 2-268 (310)
60 2qsw_A Methionine import ATP-b 44.8 14 0.00061 16.0 4.3 53 223-278 44-98 (100)
61 1nh8_A ATP phosphoribosyltrans 43.4 14 0.00064 15.9 11.8 231 1-272 17-291 (304)
62 2vha_A Periplasmic binding tra 42.9 15 0.00065 15.9 8.6 107 31-150 64-177 (287)
63 1tev_A UMP-CMP kinase; ploop, 42.8 7.8 0.00035 17.6 1.5 42 4-48 1-42 (196)
64 3dhx_A Methionine import ATP-b 42.7 15 0.00066 15.8 6.3 59 215-279 37-97 (106)
65 3k4u_A Binding component of AB 41.9 15 0.00067 15.8 5.3 113 31-162 45-167 (245)
66 3ic5_A Putative saccharopine d 41.5 15 0.00068 15.7 4.1 48 1-50 1-48 (118)
67 1vr9_A CBS domain protein/ACT 41.1 4.4 0.00019 19.2 0.0 70 202-280 139-208 (213)
68 3ir1_A Outer membrane lipoprot 40.8 16 0.0007 15.6 5.8 207 6-267 2-217 (245)
69 2pyy_A Ionotropic glutamate re 39.6 16 0.00073 15.5 12.0 111 30-150 40-153 (228)
70 3c1m_A Probable aspartokinase; 39.3 17 0.00074 15.5 11.5 130 126-270 243-380 (473)
71 1ii5_A Hypothetical protein SL 39.2 17 0.00074 15.5 6.5 106 30-150 44-157 (233)
72 2hpg_A ABC transporter, peripl 39.0 17 0.00075 15.5 2.9 177 6-190 10-236 (327)
73 2qpq_A Protein BUG27; alpha/be 38.7 17 0.00076 15.4 8.6 144 5-151 8-179 (301)
74 2qrr_A Methionine import ATP-b 38.6 17 0.00076 15.4 5.1 56 221-279 42-99 (101)
75 1aky_A Adenylate kinase; ATP:A 38.6 11 0.00048 16.7 1.7 39 6-47 4-42 (220)
76 3hv1_A Polar amino acid ABC up 38.4 17 0.00077 15.4 4.9 127 11-150 36-177 (268)
77 3c8m_A Homoserine dehydrogenas 38.1 16 0.00071 15.6 2.5 25 1-26 1-25 (331)
78 1h3d_A ATP-phosphoribosyltrans 37.8 18 0.00078 15.4 11.3 230 6-272 6-286 (299)
79 2ozz_A Hypothetical protein YH 37.5 18 0.00079 15.3 11.7 112 27-150 41-157 (231)
80 2dvz_A BUGE, putative exported 37.5 18 0.00079 15.3 8.7 72 79-151 105-192 (314)
81 1us5_A Putative GLUR0 ligand b 35.2 19 0.00086 15.1 5.0 138 5-151 19-183 (314)
82 2d1c_A Isocitrate dehydrogenas 35.2 19 0.00086 15.1 6.4 72 210-281 399-482 (496)
83 1pb7_A N-methyl-D-aspartate re 34.9 19 0.00087 15.1 3.8 99 39-150 105-219 (292)
84 3dl0_A Adenylate kinase; phosp 33.8 13 0.0006 16.1 1.6 37 7-46 1-37 (216)
85 3gmt_A Adenylate kinase; ssgci 33.6 15 0.00066 15.8 1.7 39 6-51 8-50 (230)
86 1xea_A Oxidoreductase, GFO/IDH 33.0 15 0.00066 15.8 1.7 48 4-58 1-51 (323)
87 3fb4_A Adenylate kinase; psych 32.3 15 0.00066 15.8 1.6 36 7-46 1-37 (216)
88 2h92_A Cytidylate kinase; ross 31.5 15 0.00068 15.7 1.5 43 4-49 1-43 (219)
89 2bbw_A Adenylate kinase 4, AK4 31.2 18 0.00078 15.3 1.8 119 4-145 25-146 (246)
90 2opl_A Hypothetical protein; N 28.8 25 0.0011 14.4 7.5 60 218-277 100-174 (187)
91 1ve0_A Hypothetical protein (S 28.3 25 0.0011 14.4 4.9 46 209-254 51-122 (134)
92 2cdn_A Adenylate kinase; phosp 27.4 26 0.0012 14.3 2.1 18 2-19 16-33 (201)
93 1ak2_A Adenylate kinase isoenz 27.4 23 0.001 14.7 1.8 35 5-46 15-53 (233)
94 1vpd_A Tartronate semialdehyde 26.4 27 0.0012 14.2 4.7 24 1-26 1-24 (299)
95 1zak_A Adenylate kinase; ATP:A 25.6 19 0.00086 15.1 1.2 39 5-46 4-42 (222)
96 2ql3_A Probable transcriptiona 25.3 28 0.0013 14.0 13.5 54 7-61 7-64 (209)
97 2fek_A Low molecular weight pr 24.7 29 0.0013 14.0 2.0 66 217-288 67-135 (167)
98 3m2t_A Probable dehydrogenase; 24.5 29 0.0013 13.9 2.7 50 3-58 2-55 (359)
99 2ov6_A V-type ATP synthase sub 24.4 22 0.001 14.7 1.4 75 7-85 1-76 (101)
100 1rkb_A Protein AD-004, protein 24.3 28 0.0012 14.1 1.8 41 3-46 1-41 (173)
101 2dnl_A Cytoplasmic polyadenyla 24.0 28 0.0013 14.0 1.8 74 215-292 21-97 (114)
102 1q3t_A Cytidylate kinase; nucl 21.0 34 0.0015 13.5 1.9 44 2-48 12-55 (236)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=0 Score=644.30 Aligned_cols=275 Identities=30% Similarity=0.502 Sum_probs=259.3
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 97776553888089862899999996389996060359989999998549957877603307886048878977427991
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQEL 80 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l 80 (313)
||+|++++||||||+|||||+||++++ +.+||.||++||++|++|++||||||||||++|+|.+|||+|.+ +++
T Consensus 1 ~~~m~~~~IaylGp~GtfS~~Aa~~~~-----~~v~~~s~~~vf~av~~g~~d~gVvPiENS~~G~V~~t~D~L~~-~~l 74 (283)
T 2qmx_A 1 SNAMTNWLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR-RPV 74 (283)
T ss_dssp -----CCEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH-SSE
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHC-----CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHC-CCC
T ss_conf 987766789998999858999999847-----05788999999999977998789997505252455668889852-677
Q ss_pred EEEEEEEEEEEEEEEECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf 79999997256788754799731211889746317889999998378966997165289999998357853110013478
Q T0533 81 RIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLI 160 (313)
Q Consensus 81 ~Iv~E~~l~I~~~L~~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~ 160 (313)
+|++|+.+||+|||+++++.++++|++||||||||+||++||++| |.++++.+.||+.||+.+++.+++..||| +++.
T Consensus 75 ~I~~E~~l~I~~~Ll~~~~~~~~~I~~V~SHpqal~QC~~~l~~~-~~~~~~~~~sta~aa~~~~~~~~~~~aAI-~~~~ 152 (283)
T 2qmx_A 75 VILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATH-PQIRAEAAYDTAGSAKMVAESRDKSALAI-ASKR 152 (283)
T ss_dssp EEEEEEEEECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHC-TTSEEEECSCHHHHHHHHHHTTCTTEEEE-ECHH
T ss_pred CEEEEEEECCCHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHCCCCEEHH-CHHH
T ss_conf 157788861125754368887411124542789999999989757-99227993587999999986176631001-4287
Q ss_pred HHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCC-------CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8875197156403467778715899971576467-------878885278999853787117999999999738955676
Q T0533 161 AAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALP-------ERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRI 233 (313)
Q Consensus 161 aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~-------~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkI 233 (313)
||++|||+++++||||+++|+|||+||+|++..+ ++++.|||+++|+++ |+||+|+++|++|+++|||||||
T Consensus 153 aa~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~~~~~~~dKtsl~~~~~-~~pGsL~~~L~~Fa~~~INLt~I 231 (283)
T 2qmx_A 153 AGELYGLDILKENLADEEWNITRFFCIAHENNPDISHLKVRPDVARQKTSIVFALP-NEQGSLFRALATFALRGIDLTKI 231 (283)
T ss_dssp HHHHTTCEEEESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEEEEEEEEEEEEE-CCTTHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 98770762222254346523157999945788753223567887785399999928-99972598889999879666889
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 412588898456999998658883889999999987518367866423467
Q T0533 234 ESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
Q Consensus 234 eSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp~~~ 284 (313)
||||+++++|+|+||||+|||.+|+++++||++|+++|.++|+|||||..+
T Consensus 232 eSRP~~~~~~~Y~F~id~egh~~d~~v~~aL~~L~~~~~~~kvLGsYp~~~ 282 (283)
T 2qmx_A 232 ESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVVN 282 (283)
T ss_dssp EEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred EEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 844478999638999996088688999999999998569279996413889
No 2
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3- phenylpyruvate, PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=0 Score=632.29 Aligned_cols=287 Identities=28% Similarity=0.402 Sum_probs=255.5
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC------CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 97776553888089862899999996389------996060359989999998549957877603307886048878977
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQVPGA------ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAI 74 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~~~~------~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L 74 (313)
||+|++.|||||||+|||||+||+++|+. .+.+++||.||++||++|++|. ||||||||||++|+|++|||+|
T Consensus 1 s~~~s~~kIayLGP~GtfSh~AA~~~~~~~~~~~~~~~~~~~~~si~~vf~av~~g~-d~gVVPIENS~~G~V~~tlD~L 79 (329)
T 3luy_A 1 SNAMSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL 79 (329)
T ss_dssp ---CCCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCC-CEEEEEEECCCCEEEHHHHHHH
T ss_conf 987888869995899648999999976553212566620364599999999974689-7699987166836658899876
Q ss_pred HCCCCCEEEEEEEEEEEEEEEECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEE
Q ss_conf 42799179999997256788754799731211889746317889999998378966997165289999998357853110
Q T0533 75 ATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAA 154 (313)
Q Consensus 75 ~~~~~l~Iv~E~~l~I~~~L~~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aa 154 (313)
++.++++|++|+.++|+|||++.++.++++|++||||||||+||++||++| .++.+++.|||+|++.+.+ ..|
T Consensus 80 ~~~~~l~i~~e~~l~i~~~Ll~~~~~~l~~I~~VySHPqal~QC~~fL~~~--~~~~~~~~stA~aa~~~~~----~~a- 152 (329)
T 3luy_A 80 IDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEH--RLSTQPATSNAAACRDLIP----GEI- 152 (329)
T ss_dssp HTCSSCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHT--TCEEEECSSHHHHHHTCCT----TEE-
T ss_pred HCCCCEEEEEEEEEEEEEEEEECCCCCHHHCEEEEEEHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHCCC----CHH-
T ss_conf 454772999999977778987669998788879998658999999999987--9747985538999986384----412-
Q ss_pred CCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCC--------CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 0134788875197156403467778715899971576467--------87888527899985378711799999999973
Q T0533 155 ICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALP--------ERTGADKTTVVVPLPEDHPGALMEILDQFASR 226 (313)
Q Consensus 155 a~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~--------~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~ 226 (313)
+++++.||++|||++|++||||.++|+|||+||+|++..+ ..+...+++++++...|+||+|+++|++|+++
T Consensus 153 AIas~~aae~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGaL~~vL~~Fa~~ 232 (329)
T 3luy_A 153 AFGPAICGELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDA 232 (329)
T ss_dssp EEECTTHHHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 34357778760963444230357777038999966755554456776667887736999997799987699999999987
Q ss_pred CCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 895567641258889845699999865888388999999998751836786642346787764578988
Q T0533 227 GVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADKQPAVVAPHTS 295 (313)
Q Consensus 227 gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp~~~~~p~~~~~~~~ 295 (313)
|||||||||||+++++|+|+||||++||.+|+++++||++|+++|.++|+|||||+.++..+++...+-
T Consensus 233 ~INLtkIeSRP~~~~~~eY~FfvD~eg~~~d~~~~~al~~L~~~~~~~kvLGSYPr~~~~~~~~~~~~~ 301 (329)
T 3luy_A 233 GLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRREHPNPPVTSWML 301 (329)
T ss_dssp TCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCCCCCCCGGGCCC
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 988607853458999830899999848879899999999999856907997503178889998776667
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=0 Score=609.87 Aligned_cols=265 Identities=31% Similarity=0.419 Sum_probs=242.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 55388808986289999999638999606035998999999854995787760330788604887897742799179999
Q T0533 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIRE 85 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E 85 (313)
.||||||||+|||||+||+++|+..+.+++||.||++||++|++|++||||||||||++|+|.+|||+|.+ ++++|++|
T Consensus 3 ~mkIaylGp~GsfS~~Aa~~~f~~~~~~~~~~~s~~~vf~av~~g~~d~gvvPiENS~~G~V~~t~DlL~~-~~~~I~~E 81 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ-QDVFAHGE 81 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT-TSSEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEHHHHHHHC-CCEEEEEE
T ss_conf 52899818997199999998637678536505999999999977998889998705370485154323221-61589988
Q ss_pred EEEEEEEEEEECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHC
Q ss_conf 99725678875479973121188974631788999999837896699716528999999835785311001347888751
Q T0533 86 ALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQP 165 (313)
Q Consensus 86 ~~l~I~~~L~~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~y 165 (313)
+.+||+|||+++++.++++|++||||||||+||++||++|.| +...+.||++|++.+. +. .+++++..||++|
T Consensus 82 ~~l~i~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~--~~~~~~s~a~aa~~~~----~~-~aaIas~~aA~~y 154 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF--DYDYVDSTIQSLTKIE----NG-VAAIAPLGSGEAY 154 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTC--EEEECSSHHHHHHTCB----TT-EEEEEETTTSGGG
T ss_pred EEEEEEEEECCCCCCCHHHCEEEEEECHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHC----CC-CCCCCCHHHHHHC
T ss_conf 857772110126778753354888742789999999997044--2001088999999731----13-2323566465441
Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE
Q ss_conf 97156403467778715899971576467878885278999853787117999999999738955676412588898456
Q T0533 166 GLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHY 245 (313)
Q Consensus 166 gL~il~~~I~d~~~N~TRF~ii~~~~~~~~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y 245 (313)
||+||+++|||.++|+|||+||+|++. ...+.++++++++..+|+||+|+++|++|+++|||||||||||+++++|+|
T Consensus 155 gL~il~~~I~d~~~N~TRF~vi~~~~~--~~~~~~~~~~~i~~~~~~pGaL~~~L~~Fa~~~INLtkIeSRP~~~~~~~Y 232 (267)
T 2qmw_A 155 GFTPIDTHIEDYPHNVTRFLVIKNQQQ--FDQNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMY 232 (267)
T ss_dssp TCCEEEECCCSCSCCEEEEEEEESCCC--CCSSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCE
T ss_pred CCCHHHHCCCCCCCCEEEEEEEECCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCE
T ss_conf 421354168678787898999855866--677754202320137998777999999999889766999710068999748
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 999998658883889999999987518367866423
Q T0533 246 FFSIDADGHATDSRVADALAGLHRISPATRFLGSYA 281 (313)
Q Consensus 246 ~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp 281 (313)
+||||+|||.++ ++++||++|+++|.++|+||||-
T Consensus 233 ~F~iD~eg~~~~-~~~~al~~L~~~~~~~kvLGsY~ 267 (267)
T 2qmw_A 233 RFFVQADSAITT-DIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp EEEEEESCCSCH-HHHHHHHHHHHTTEEEEEEEEEC
T ss_pred EEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999997578988-99999999998359379984569
No 4
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.82 E-value=2.6e-20 Score=147.57 Aligned_cols=104 Identities=23% Similarity=0.303 Sum_probs=91.1
Q ss_pred HHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 88875197156403467778715899971576467878885278999853787117999999999738955676412588
Q T0533 160 IAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTG 239 (313)
Q Consensus 160 ~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~ 239 (313)
+||+.|++.+|+++|+|+.+|.+++ + ...++.+||||+|++. |++|+|.++|++|..++|||++|||||.+
T Consensus 1 ~aa~~~~~~vla~~i~D~~~~~~~i----~----~~~~~~~ktSiiFSLk-d~vGsLaraLkvFe~~~INLtHIESRPSk 71 (429)
T 1phz_A 1 MAAVVLENGVLSRKLSDFGQETSYI----E----DNSNQNGAISLIFSLK-EEVGALAKVLRLFEENDINLTHIESRPSR 71 (429)
T ss_dssp ------------------CCCCSCC----C----CCCCSSCCEEEEEEEE-CCTTHHHHHHHHHHTTTCCTTSEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCC----C----CCCCCCCEEEEEEEEC-CCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9414422225666676513677721----6----7878786089999968-76158999999999869369996368887
Q ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCE
Q ss_conf 8984569999986588838899999999875183
Q T0533 240 QYLGHYFFSIDADGHATDSRVADALAGLHRISPA 273 (313)
Q Consensus 240 ~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~ 273 (313)
...|+|.|||+||++ .++.+..+++.|+.....
T Consensus 72 ~~~~~yeffVd~E~~-~~~~l~~li~~Lk~~~~~ 104 (429)
T 1phz_A 72 LNKDEYEFFTYLDKR-TKPVLGSIIKSLRNDIGA 104 (429)
T ss_dssp SCTTEEEEEECBCGG-GHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHH
T ss_conf 888862699998267-847899999999987511
No 5
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.33 E-value=0.0019 Score=40.48 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=58.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 278999853787117999999999738955676412588898456999998658883889999999987518367866
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLG 278 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLG 278 (313)
|-++.+.+ .|+||+|.++-+.|++||.|+.+|-.-|+... +-..+-+-+.| ++..+.+....|++.-.-+++.-
T Consensus 3 k~~isvlv-eN~pGvL~Rv~glFsrRg~NI~SL~v~~te~~-~~SR~Tiv~~g--~~~~i~qi~kQL~KlidV~~V~~ 76 (164)
T 2f1f_A 3 RRILSVLL-ENESGALSRVIGLFSQRGYNIESLTVAPTDDP-TLSRMTIQTVG--DEKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp EEEEEEEE-ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS-SEEEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CEEEEEEEEEC--CHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 59999999-87867999999999716866368996134689-75799999979--99999999999826878799432
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.30 E-value=0.001 Score=42.19 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=53.2
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 52789998537871179999999997389556764125888984569999986588838899999999875183678
Q T0533 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRF 276 (313)
Q Consensus 200 ~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkv 276 (313)
..+.|-+.. .|+||.|.++.++|+..|+|+..+..+.. .+.....|.+++ .+...+.++++.|++...-.+|
T Consensus 4 f~~~L~I~~-~Dr~GlL~dIt~~is~~~inI~~i~~~~~-~~~~~~~i~veV---~d~~~L~~li~~L~~i~~V~~V 75 (88)
T 2ko1_A 4 FLAGIRIVG-EDKNGMTNQITGVISKFDTNIRTIVLNAK-DGIFTCNLMIFV---KNTDKLTTLMDKLRKVQGVFTV 75 (88)
T ss_dssp EEEEEEEEE-ECCTTHHHHHHHHHTTSSSCEEEEEEEEC-SSEEEEEEEEEE---SSHHHHHHHHHHHTTCTTEEEE
T ss_pred EEEEEEEEE-ECCCCHHHHHHHHHHHCCCEEEEEEEEEC-CCEEEEEEEEEE---CCHHHHHHHHHHHHCCCCCCEE
T ss_conf 799999999-77878899999999887982999999834-998999999999---9999999999998779998899
No 7
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=97.03 E-value=2e-06 Score=59.49 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCEE--ECCCCHHHHHHHHHCCCCCE-EEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 8986289999999638999606--03599899999985499578-77603307886048878977427991
Q T0533 13 GPQGTFTEAALMQVPGAADATR--IPCTNVNTALERVRAGEADA-AMVPIENSVEGGVTATLDAIATGQEL 80 (313)
Q Consensus 13 GP~GSfS~~AA~~~~~~~~~~~--v~~~s~~~vf~aV~~g~~d~-gVvPiENS~~G~V~~tlD~L~~~~~l 80 (313)
.|.+.++..+++.++...+.++ ..|.++.+++..++.+.++| |++|+||+++|+++.+||+|... +|
T Consensus 86 ~~~~~~~l~~~R~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~f~~~l~~enls~~~~~~v~d~L~~~-~L 155 (156)
T 2gbb_A 86 PGWQPKPLDDVRANIGELSTKILEQIAEELKTCKPAEMGDKAHFINTIRQHNLTSADVEAIFSTFNQV-KL 155 (156)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTSCCHHHHHHHCCCTTCCHHHHHHHHHHHTTC-CB
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CC
T ss_conf 67898859999899999889999999999998523000449999855356578888899999998735-58
No 8
>2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=97.02 E-value=0.0056 Score=37.56 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=59.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 278999853787117999999999738955676412588898456999998658883889999999987518367866
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLG 278 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLG 278 (313)
|-++.+.+ +|+||.|.++-+.|++||.|+-+|---|+. .++-..+-+-++| ++..+.+....|.+..+-+++.-
T Consensus 4 k~~isvlv-eN~pGvL~RvsglFsrRg~NI~SL~v~~te-~~~iSR~Tiv~~~--~~~~i~qi~kQL~KLidVi~V~d 77 (165)
T 2pc6_A 4 RHIISLLM-ENEAGALSRVAGLFSARGYNIESLSVAPTE-DPTLSRMTLVTNG--PDEIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp EEEEEEEE-ECSTTHHHHHHHHHHHHTCCCCEEEEEECS-STTEEEEEEEEEE--CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCEEEEEEEEEC--CHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 49999999-878569999999986267445788873247-9980799999978--88999999999856866799996
No 9
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.81 E-value=0.017 Score=34.43 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=45.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCEEEEEEEE----CCCCCHHHHHHHHHHHHH
Q ss_conf 999853787117999999999738955676412588898---4569999986----588838899999999875
Q T0533 204 VVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL---GHYFFSIDAD----GHATDSRVADALAGLHRI 270 (313)
Q Consensus 204 i~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~---~~Y~F~id~e----g~~~d~~v~~al~eL~~~ 270 (313)
+.+. ..|+||-|+++-..|+++|+|+.++.++...... +.-.|+++++ +..+-..+++.|.+|...
T Consensus 96 v~v~-g~DrpGlL~~It~~la~~~inI~~i~~~t~~~~~~~~g~~~f~~~~~~~vp~~~~~~~l~~~l~~L~~e 168 (192)
T 1u8s_A 96 VYVE-SDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEE-ESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEE-ECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9998-447068999999999977996668999953677666778579999999759999999999999999998
No 10
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.80 E-value=0.0024 Score=39.87 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCEEEEEEEECCCC---CHHHHHHHHHHHH-HCCEEEE
Q ss_conf 3787117999999999738955676412588-89845699999865888---3889999999987-5183678
Q T0533 209 PEDHPGALMEILDQFASRGVNLSRIESRPTG-QYLGHYFFSIDADGHAT---DSRVADALAGLHR-ISPATRF 276 (313)
Q Consensus 209 ~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~-~~~~~Y~F~id~eg~~~---d~~v~~al~eL~~-~~~~vkv 276 (313)
-+|+||.|+++-+.|+.+|+|+.+++++=.. ...+.-+|++++.-... .+.++++|.+|.+ .+-.+.+
T Consensus 100 g~DrpGll~~it~~La~~ginI~~l~t~~~~~~~~g~~lF~~~~~v~vp~~~~~~l~~~L~~l~~el~vDi~v 172 (195)
T 2nyi_A 100 GPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDIDL 172 (195)
T ss_dssp EECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEE
T ss_conf 5077779999999987649530222344434887787449999999679785799999999999997847999
No 11
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6
Probab=96.77 E-value=0.011 Score=35.81 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=58.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
Q ss_conf 27899985378711799999999973895567641258889845699999865888388999999998751836786
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFL 277 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvL 277 (313)
|-+|.+.+ .|+||+|.++-+.|++||.|+-+|---|+... +-..+-+-++| ++..+.+....|++.-+-+++.
T Consensus 29 k~~isvlV-eN~~GvL~RVsglFsrRg~NIeSL~V~~te~~-~iSRmTiv~~~--~~~~ieQI~kQL~KLIdVi~V~ 101 (193)
T 2fgc_A 29 EHLVSMLV-HNKPGVMRKVANLFARRGFNISSITVGESETP-GLSRLVIMVKG--DDKTIEQIEKQAYKLVEVVKVT 101 (193)
T ss_dssp EEEEEEEE-ECCTTHHHHHHHHHHTTTCEEEEEEEEECSST-TEEEEEEEEEE--CTTHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC-CEEEEEEEEEC--CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89999999-77878999999998617856367885246688-80799999968--8889999999997478859999
No 12
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7
Probab=96.43 E-value=0.018 Score=34.39 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=50.8
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 52789998537871179999999997389556764125888984569999986588838899999999875
Q T0533 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
Q Consensus 200 ~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~ 270 (313)
-|..|-+.- .|+||-++.+-+.++++|+|+..+...-. +..+...+.+++.+..+-+.++++|+.+.+.
T Consensus 4 mk~vitv~g-~DrpGIva~vs~~L~~~g~NI~d~~q~~~-~~~f~~~~~v~~~~~~~~~~l~~~l~~l~~~ 72 (91)
T 1zpv_A 4 MKAIITVVG-KDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEE-SCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 359999993-89887999999999987993998051893-7951899999669999999999999999998
No 13
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.10 E-value=0.022 Score=33.79 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=49.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 999853787117999999999738955676412588898456999998658883889999999987518
Q T0533 204 VVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
Q Consensus 204 i~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~ 272 (313)
+-|.+ .|+||.|.++-++|+++||++-++..++.....+. .-+|=+.-...+..+++++++|+....
T Consensus 362 lRl~v-~D~pGvla~I~~il~~~~ISI~sviQ~~~~~~~~~-~~iViiTh~~~e~~l~~al~~i~~l~~ 428 (444)
T 3mtj_A 362 LRLRA-FDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ-VDIILLTHVTLEKNVNAAIAKIEALDA 428 (444)
T ss_dssp EEEEE-C-CCHHHHHHHHHHHHTTCCEEEEEECC------C-EEEEEEECSEEHHHHHHHHHHHTTSTT
T ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 99983-77627799999999875987256652577778870-349999383889999999999865886
No 14
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11
Probab=95.69 E-value=0.043 Score=31.91 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=44.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 78999853787117999999999738955676412588898456999998658883889999999987518367866
Q T0533 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLG 278 (313)
Q Consensus 202 tsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLG 278 (313)
++++-.--.++||.|.+++..++++|||+..+.+--.. ..-.|.++.+ | ..+|++.|.+.. +++++
T Consensus 72 ~~vvg~~m~~~~G~la~i~~~L~~~gINI~~i~~~~s~---~~~~~vv~~~----D--~~ka~~~L~~~g--f~~~~ 137 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN---NVANVVIRPS----N--MDKCIEVLKEKK--VDLLA 137 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET---TEEEEEEEES----C--HHHHHHHHHHTT--CEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCC---CCEEEEEECC----C--HHHHHHHHHHCC--CEECC
T ss_conf 66894157899539999999998779886984411587---8369999878----8--999999999859--97868
No 15
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=95.50 E-value=0.13 Score=28.95 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=72.0
Q ss_pred HHHHHHHCCCEEEEC--CCCCCCCCEEEEEEEECCCCCCC-----CCC-----------------CCEEEEEEEECCCCC
Q ss_conf 478887519715640--34677787158999715764678-----788-----------------852789998537871
Q T0533 158 PLIAAEQPGLNVLAE--DIGDNPDAVTRFILVSRPGALPE-----RTG-----------------ADKTTVVVPLPEDHP 213 (313)
Q Consensus 158 ~~~aa~~ygL~il~~--~I~d~~~N~TRF~ii~~~~~~~~-----~~~-----------------~~ktsi~~~~~~d~p 213 (313)
+..-|+..|+++-.. +..+...|..+..+++.++.... -++ .+..+|++. .+|+|
T Consensus 387 A~~iA~e~Gi~v~~~~~~~~~~~~n~v~i~~~~~~~~~~~v~Gt~~g~~~~~riv~i~g~~v~~~~~~~~L~~~-~~D~P 465 (529)
T 1ygy_A 387 APALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIH-YVDRP 465 (529)
T ss_dssp HHHHHHHHSCEEEEEEESCCSSSSEEEEEEEECTTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEE-ESCCT
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEECCEEEEEECCCCEEEEE-ECCCC
T ss_conf 78999973964789864667776407899998289968999999978986403899999889972787689998-27869
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC--CEEEEE
Q ss_conf 17999999999738955676-41258889845699999865888388999999998751--836786
Q T0533 214 GALMEILDQFASRGVNLSRI-ESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRIS--PATRFL 277 (313)
Q Consensus 214 GaL~~vL~~F~~~gINLtkI-eSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~--~~vkvL 277 (313)
|....+=+.++++|||+..+ -||-.+++ +=+..+++|+.+.++ ++++|++.. .+++++
T Consensus 466 GvIg~vg~~Lg~~~INIa~m~~~R~~~g~--~A~~vi~~D~~v~~~----~l~~i~~~~~i~~v~~v 526 (529)
T 1ygy_A 466 GALGKIGTLLGTAGVNIQAAQLSEDAEGP--GATILLRLDQDVPDD----VRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEECSSSS--CEEEEEEESSCCCHH----HHHHHHHHHTEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEECCEEECCCCCC--EEEEEEECCCCCCHH----HHHHHHCCCCCCEEEEE
T ss_conf 86899999987579786037872268897--689999968999999----99998648796189999
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=95.27 E-value=0.053 Score=31.33 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 7871179999999997389556764125888--9845699999865888388999999998751836786642
Q T0533 210 EDHPGALMEILDQFASRGVNLSRIESRPTGQ--YLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSY 280 (313)
Q Consensus 210 ~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~--~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsY 280 (313)
.|++|.|.++.++++++|-|++.++-.-... ..+.-.-|+|+|| . | ....+++|+.... |+-.--+
T Consensus 12 ~nk~GvL~~i~giiae~~~NI~ytq~f~~~~~~~~g~~~iY~Eie~-~-d--~~~l~~~l~~~~~-V~~V~~h 79 (223)
T 1y7p_A 12 ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG-G-D--FEKILERVKTFDY-IIEIEEE 79 (223)
T ss_dssp ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS-S-C--HHHHHHHHHTCTT-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECC-C-C--HHHHHHHHHCCCC-EEEEEEE
T ss_conf 5876559998889986389759998773036677882689999828-9-9--8999999866996-5899961
No 17
>3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis}
Probab=95.01 E-value=0.18 Score=27.98 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHH---CCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCE
Q ss_conf 6553888089862899999996---3899960603599899999985499578776033078860488789774279917
Q T0533 5 SAVTYTFLGPQGTFTEAALMQV---PGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELR 81 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~~---~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~ 81 (313)
+.+||+++.-+.+....+...- +.+.+++...+.+-+++.+++.+|++|+|+.| ....+.+..+..+++
T Consensus 5 ~~irvg~~~~p~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~al~~G~~D~a~~~--------~~~~~~~~~~g~~ik 76 (283)
T 3hn0_A 5 TVIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLP--------MINAANLYNKGIKIK 76 (283)
T ss_dssp CEEEEEEESSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEE--------HHHHHHHHHTTCSCE
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEC--------HHHHHHHHHCCCCCE
T ss_conf 569999438846899999998424356887699994798999999977998899736--------899999985799806
Q ss_pred EEEEEEEEEEEEEEECCCCCHHHCEEEEECC---CHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHHCCCCCCEEC
Q ss_conf 9999997256788754799731211889746---3178899999983789669971-652899999983578531100
Q T0533 82 IIREALVPITFVLVARPGVELSDIKRISTHG---HAWAQCRLWVDEHLPNADYVPG-SSTAASAMGLLEDDAPYEAAI 155 (313)
Q Consensus 82 Iv~E~~l~I~~~L~~~~~~~l~~I~~V~SHP---qal~QC~~fL~~~~p~~~~v~~-~STa~Aa~~v~~~~~~~~aaa 155 (313)
|++-..... ..+++.. +|+. ++|+.+. ..-..++.+|+++....+.... .+-.+....+.++.. +.+..
T Consensus 77 iia~~~~~~-~~i~s~~--DLkG-k~I~~~~~gs~~~~~l~~~l~~~Gl~~d~~~~~~~~~~~~~al~~g~v-Da~~~ 149 (283)
T 3hn0_A 77 LAGCPIWGT-LYLVEKT--PLKE-PALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKV-NRAVL 149 (283)
T ss_dssp EEEEEECCC-CEEEECS--SCCS-CCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSC-SEEEE
T ss_pred EEEEEECCC-CEEEEHH--HCCC-CEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCC-CEEEE
T ss_conf 999851487-5165188--8599-999981899889999999998679986435641587899888744871-28997
No 18
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=94.72 E-value=0.21 Score=27.52 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC--C------------CCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 65538880898628999999963--8------------999606035998999999854995787760330788604887
Q T0533 5 SAVTYTFLGPQGTFTEAALMQVP--G------------AADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTAT 70 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~~~--~------------~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t 70 (313)
+++|||. |+|.-.+.+..-+. | ..+.+.+ +-.-.|+-..|+.|.+|+||+-
T Consensus 1 ~mL~iAl--PKGRL~~~t~~lL~~aGl~~~r~~~~~~~~~~i~v~-~~r~~DIp~~V~~G~~DlGItG------------ 65 (219)
T 1o63_A 1 SLLKLAI--PKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCF-MVRPFDVPTYLVHGVADIGFCG------------ 65 (219)
T ss_dssp --CEEEE--ECSTTHHHHHHHHHHHTCCEEEECSSEEEETTEEEE-EECGGGHHHHHHTTSCSEEEEE------------
T ss_pred CCEEEEE--CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE-EECHHHHHHHHHCCCCCCCCCC------------
T ss_conf 9179994--465468999999998799814554224589996999-9788999999984988656550------------
Q ss_pred HHHHHCCCCCEEEEEEEEEEEEEEEEC---CCCCHHH-CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 897742799179999997256788754---7997312-118897463178899999983789669971652899999983
Q T0533 71 LDAIATGQELRIIREALVPITFVLVAR---PGVELSD-IKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLE 146 (313)
Q Consensus 71 lD~L~~~~~l~Iv~E~~l~I~~~L~~~---~~~~l~~-I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~ 146 (313)
+|.|.+ ++..+.....++..+|-++. .+.+..+ -.+|.|-..-+. ++|++++.-+++++......+.|-..--
T Consensus 66 ~D~l~E-~~~~v~~~~~L~~g~~~l~vA~p~~~~~~~~~~rVATkYpnit--~~ff~~~gi~~~ii~~~GavE~Ap~~g~ 142 (219)
T 1o63_A 66 TDVLLE-KETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVT--QRYCESKGWHCRIIPLKGSVELAPIAGL 142 (219)
T ss_dssp HHHHHH-SCCCCBCCSEEEEEEEEEEEEEETTTCCCSSCEEEEESCHHHH--HHHHHHHTCCEEEEECSSCTTHHHHHTS
T ss_pred HHHHHH-CCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 888764-4365235531455511378841554455665646643317599--9999984995489974587778888883
Q ss_pred CCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEE
Q ss_conf 5785311001347888751971564034677787158999
Q T0533 147 DDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFIL 186 (313)
Q Consensus 147 ~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~i 186 (313)
.. ..+=+.++-..-+..||++++.-+. -.+|+++
T Consensus 143 AD--~IvDivsTG~TLk~N~Lk~i~~il~----ssa~lI~ 176 (219)
T 1o63_A 143 SD--LIVDITETGRTLKENNLEILDEIFV----IRTHVVV 176 (219)
T ss_dssp CS--EEEEEESSSHHHHHTTEEEEEEEEE----EEEEEEE
T ss_pred EE--EEEEEECCHHHHHHCCCEECCEEEE----EEHHHEE
T ss_conf 00--7887746778899879998100761----0742126
No 19
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11
Probab=92.92 E-value=0.37 Score=25.99 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 9998537871179999999997389556764125888984569999986588838899999999875183678664
Q T0533 204 VVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGS 279 (313)
Q Consensus 204 i~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGs 279 (313)
+.++++ |+||.|.++++.|+++|||+-.|---++.. +.+.-.+. .+.+....++.+....+..+.++|.
T Consensus 9 isvfv~-n~pG~La~v~~~la~~gInI~~is~~~t~~----~~i~r~~~--~~~~~~~~~l~~~~~~~~~~~vvg~ 77 (144)
T 2f06_A 9 LSIFLE-NKSGRLTEVTEVLAKENINLSALCIAENAD----FGILRGIV--SDPDKAYKALKDNHFAVNITDVVGI 77 (144)
T ss_dssp EEEEEC-SSSSHHHHHHHHHHHTTCCEEEEEEEECSS----CEEEEEEE--SCHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCCCCEEEEEEECCCC----CCEECCCC--CCHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 999947-974299999999998697289999434678----75661221--2224556766504763115668941
No 20
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=89.38 E-value=0.57 Score=24.78 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=102.1
Q ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEEEE---EEEEEEECCCCCH-------HHC--EEEEECCCHH
Q ss_conf 4995787760330788604887897742-7991799999972---5678875479973-------121--1889746317
Q T0533 49 AGEADAAMVPIENSVEGGVTATLDAIAT-GQELRIIREALVP---ITFVLVARPGVEL-------SDI--KRISTHGHAW 115 (313)
Q Consensus 49 ~g~~d~gVvPiENS~~G~V~~tlD~L~~-~~~l~Iv~E~~l~---I~~~L~~~~~~~l-------~~I--~~V~SHPqal 115 (313)
.++.|+-|+|+=+ .|.+.-..-.+.. ..+++|++----. ....+-...-..+ +.+ +.+ -+.++
T Consensus 177 ~~~~D~vvvpvGg--GGliaGia~~lk~~~p~ikIigVEp~~a~~~~~s~~~g~~v~~~~~~t~adGiav~~v--G~~~~ 252 (514)
T 1tdj_A 177 DAHLDRVFVPVGG--GGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRI--GDETF 252 (514)
T ss_dssp CTTCCEEEEECSS--SHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSC--CCHHH
T ss_pred CCCCCEEEEECCH--HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCEECCCCCCCEECCCCCCCC--CHHHH
T ss_conf 5898989997275--0899999999987499760565570104578878757975225888862155368987--68899
Q ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEE-E-CCCCCCCCCEEEEEEEECCCCC
Q ss_conf 8899999983789669971652899999983578531100134788875197156-4-0346777871589997157646
Q T0533 116 AQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVL-A-EDIGDNPDAVTRFILVSRPGAL 193 (313)
Q Consensus 116 ~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il-~-~~I~d~~~N~TRF~ii~~~~~~ 193 (313)
. +++++...+-.++......|++.+.+...- ++.+..|+-+-++.-+ + .++ .+.|--+|++-.+..
T Consensus 253 ~----~~~~~vD~vv~Vsd~ei~~Ai~~L~~~egi----vvepagA~alAal~k~~~~~~~----~gk~vV~IlsGgNid 320 (514)
T 1tdj_A 253 R----LCQEYLDDIITVDSDAICAAMKDLFEDVRA----VAEPSGALALAGMKKYIALHNI----RGERLAHILSGANVN 320 (514)
T ss_dssp H----HHTTSCCEEEEECHHHHHHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHHHHTC----CSCEEEEECCCCCCC
T ss_pred H----HHHHCCCEEEEECHHHHHHHHHHHHHHCCE----EEEECHHHHHHHHHHHHHHHCC----CCCCEEEEECCCCCC
T ss_conf 9----876248779981599999999999998390----8991568899999999876035----545237750588878
Q ss_pred CCC----------CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 787----------8885278999853787117999999999738955676412588898456999998658883889999
Q T0533 194 PER----------TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADA 263 (313)
Q Consensus 194 ~~~----------~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~a 263 (313)
... ...-+..+.+.+| |+||+|.++++.+..+ |+|.++-|-...+.. .-|+.++-....+..++.
T Consensus 321 ~~~l~~i~~r~~~~~~r~~~~~v~i~-~~pG~l~~~~~~i~~~--~i~e~~y~~~~~~~~--~~~~~v~~t~~~~~~~~i 395 (514)
T 1tdj_A 321 FHGLRYVSERCELGEQREALLAVTIP-EEKGSFLKFCQLLGGR--SVTEFNYRFADAKNA--CIFVGVRLSRGLEERKEI 395 (514)
T ss_dssp TTHHHHHHHHHHHHHCCEEEEEEECC-BSSSCSHHHHHTTSSS--EEEEEEEECCCSSBC--EEEEEEECSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHHCCC--CEEEEEEEECCCCCC--CEEEEEEEECCCHHHHHH
T ss_conf 78999999998875587599999667-7626799999873788--517867651366557--279999984681158999
Q ss_pred HHHHHHHCCEEE
Q ss_conf 999987518367
Q T0533 264 LAGLHRISPATR 275 (313)
Q Consensus 264 l~eL~~~~~~vk 275 (313)
++.|++....+.
T Consensus 396 ~~~L~~~gy~~~ 407 (514)
T 1tdj_A 396 LQMLNDGGYSVV 407 (514)
T ss_dssp HHHHTSSSCEEE
T ss_pred HHHHHHCCCCEE
T ss_conf 999974687058
No 21
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=88.61 E-value=1.2 Score=22.84 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=47.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 789998537871179999999997389556764125888984569999986588838899999999875183678
Q T0533 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRF 276 (313)
Q Consensus 202 tsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkv 276 (313)
..++.. .+|.||.|.+++.+++++|+|+.....+- ++. .-| =.+|++. .++.-...+++|+..-..+|+
T Consensus 344 ~~~~~~-~~~~~~~~~~i~~~~~~~~~ni~~~~n~~-~~~-~ay-~~~d~~~--~~~~~~~~~~~l~~~~~v~~~ 412 (416)
T 3k5p_A 344 TRFMHV-HENRPGILNSLMNVFSHHHINIASQFLQT-DGE-VGY-LVMEADG--VGEASDAVLQEIREIPGTIRA 412 (416)
T ss_dssp EEEEEE-ECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSS-CEE-EEEEECC--CHHHHHHHHHHHHTSTTEEEE
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHHCCCCHHHHHCCC-CCC-EEE-EEEEECC--CCCCCHHHHHHHHHCCCEEEE
T ss_conf 549985-03512599999999987699878864025-574-669-9998236--776569999999718888999
No 22
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H
Probab=87.28 E-value=0.48 Score=25.26 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHH---HHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 765538880898628999999963899960603599899---99998549957877603307886048878977427991
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNT---ALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQEL 80 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~---vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l 80 (313)
|++||||..|.+-|-. -.++.|- +-.+..+.++ .|+.+-+. -|||||=|..++.-.+.+.++.+.....+
T Consensus 1 m~~mkIaVIGd~d~v~---GFrL~Gi---~~~~v~~~ee~~~~l~~l~~~-~d~gII~ite~~~~~i~~~i~~~~~~~~~ 73 (109)
T 2d00_A 1 MVPVRMAVIADPETAQ---GFRLAGL---EGYGASSAEEAQSLLETLVER-GGYALVAVDEALLPDPERAVERLMRGRDL 73 (109)
T ss_dssp CCCCCEEEEECHHHHH---HHHHTTS---EEEECSSHHHHHHHHHHHHHH-CCCSEEEEETTTCSCHHHHHHHHTTCCCC
T ss_pred CCCEEEEEECCHHHHH---HHHHCCE---EEEECCCHHHHHHHHHHHHHC-CCEEEEEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 9726999983688878---8764041---357579989999999999708-88149997289986618999999846999
Q ss_pred EEE
Q ss_conf 799
Q T0533 81 RII 83 (313)
Q Consensus 81 ~Iv 83 (313)
.++
T Consensus 74 P~I 76 (109)
T 2d00_A 74 PVL 76 (109)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 889
No 23
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=87.17 E-value=1.4 Score=22.29 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=64.0
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC---CHHHC-
Q ss_conf 99606035998999999854995787760330788604887897742799179999997256788754799---73121-
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV---ELSDI- 105 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~---~l~~I- 105 (313)
...++++. ++...+.++..+.+|.++..+- .|-+.-. ......-++.....++++.+. +++|+
T Consensus 81 ~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~t~~R~~----~~~fs~py~~~~~~~~~~~~~~i~~~~dL~ 147 (259)
T 2v25_A 81 KKIKLVAV-NAKTRGPLLDNGSVDAVIATFT--------ITPERKR----IYNFSEPYYQDAIGLLVLKEKKYKSLADMK 147 (259)
T ss_dssp TSEEEEEC-CTTTHHHHHHTTSCSEECSSCB--------CCHHHHT----TEEECSCSEEEEEEEEEEGGGCCCSGGGCT
T ss_pred EEEEEEEE-EHHHHHHHHHCCCCCEECCCCC--------CCHHHHH----CCCCCCCEECCCCCEEEECCCCCCCHHHCC
T ss_conf 69999973-1777999986699763314677--------8988992----366045243056205898356779867827
Q ss_pred -EEEEECC--CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf -1889746--31788999999837896699716528999999835785311001347888
Q T0533 106 -KRISTHG--HAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAA 162 (313)
Q Consensus 106 -~~V~SHP--qal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa 162 (313)
++|..-. -......+++.+..++++.+.+.|...+.+.+..+.-. + ++.....+
T Consensus 148 gk~I~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~grvD--a-~~~d~~~~ 204 (259)
T 2v25_A 148 GANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVD--A-FSVDKSIL 204 (259)
T ss_dssp TCEEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSS--E-EEEEHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCE--E-EEECHHHH
T ss_conf 975899806607764567787518875135233178999986343622--9-99159999
No 24
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens}
Probab=86.86 E-value=1.5 Score=22.18 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=70.4
Q ss_pred HCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC----C
Q ss_conf 638999606035998999999854995787760330788604887897742799179999997256788754799----7
Q T0533 26 VPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV----E 101 (313)
Q Consensus 26 ~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~----~ 101 (313)
..| -+.++++. ++..++.++++|++|. +..+-. .+.. . + ......-++.....++++.+. +
T Consensus 47 ~~g-~~~~~~~~-~~~~~~~~l~~G~~D~-~~~~~~------~~~r--~-~---~~~~s~p~~~~~~~~~~~~~~~~~~~ 111 (234)
T 3h7m_A 47 VMG-MTVEFRLG-AWSEMFSALKSGRVDV-LQGISW------SEKR--A-R---QIDFTPPHTIVYHAIFARRDSPPAAG 111 (234)
T ss_dssp HHT-CCEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC------CHHH--H-T---TEEEEEEEEEEEEEEEEESSSCCCSS
T ss_pred HHC-CCEEEECC-CHHHHHHHHHCCCCCC-CCCCCC------CHHH--H-H---CCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 959-97599317-9999999998699662-001002------2877--7-4---05768875312258988621234577
Q ss_pred HHHC--EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 3121--188974631788999999837896699716528999999835785311001347888
Q T0533 102 LSDI--KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAA 162 (313)
Q Consensus 102 l~~I--~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa 162 (313)
++++ ++|....-. -...|+.++.|+++++.+.|..++.+.+..+... +++. ....+
T Consensus 112 ~~dl~g~~v~v~~~~--~~~~~l~~~~~~~~i~~~~s~~~~~~~l~~G~~D--a~i~-~~~~~ 169 (234)
T 3h7m_A 112 LEDLRGRKVALHRDG--IMHEYLAERGYGKDLVLTPTPADALRLLAAGGCD--YAVV-AMVPG 169 (234)
T ss_dssp GGGGTTSCEEEETTS--HHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSS--EEEE-EHHHH
T ss_pred HHHHCCCEEEEECCC--HHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCC--EEEE-CHHHH
T ss_conf 567279823343797--3999999855586210001267789999769956--9995-07888
No 25
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=86.44 E-value=1.5 Score=22.04 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=45.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 789998537871179999999997389556764125888984569999986588838899999999875183678
Q T0533 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRF 276 (313)
Q Consensus 202 tsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkv 276 (313)
..+.+.. +|+||.|.+++.+++++|+|+......- ++. -.| =.+|++. +.+..+..+++|+.....+|+
T Consensus 332 ~r~~~~~-~n~pgvl~~i~~~l~~~~~ni~~~~~~~-~~~-~~~-~~~di~~--~~~~~~~~~~~l~~~~~vi~~ 400 (404)
T 1sc6_A 332 RRLMHIH-ENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQ-MGY-VVIDIEA--DEDVAEKALQAMKAIPGTIRA 400 (404)
T ss_dssp EEEEEEE-ESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSS-EEE-EEEEEEC--CHHHHHHHHHHHHTSTTEEEE
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHCCCCHHHHHCCC-CCC-EEE-EEEEEEC--CCCCCHHHHHHHHHCCCEEEE
T ss_conf 4899983-5877668999999987699879975367-754-569-9999844--787549999999738988999
No 26
>2vd2_A ATP phosphoribosyltransferase; HISG, cytoplasm, glycosyltransferase, histidine biosynthesis, amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=85.47 E-value=1.7 Score=21.74 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=80.5
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHHHC--C-------C-----------CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 77655-38880898628999999963--8-------9-----------99606035998999999854995787760330
Q T0533 3 AMSAV-TYTFLGPQGTFTEAALMQVP--G-------A-----------ADATRIPCTNVNTALERVRAGEADAAMVPIEN 61 (313)
Q Consensus 3 ~m~~~-~iayLGP~GSfS~~AA~~~~--~-------~-----------~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiEN 61 (313)
+|++| |||.. +|.-.+.+..-+- | . .+.+.+ +-.-.|+-..|+.|.+|+||+-
T Consensus 1 ~M~~ml~iAlP--KGRL~~~t~~lL~~~Gl~~~~~~~~~R~l~~~~~~~~i~v~-~~r~~DIp~~V~~G~~DlGI~G--- 74 (214)
T 2vd2_A 1 AMGKLLTMAMP--KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFI-LAKPMDVTTYVEHGVADVGIAG--- 74 (214)
T ss_dssp CCCCCEEEEEE--CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGGGTEEEE-EECTTHHHHHHHHTSSSEEECC---
T ss_pred CCCCCEEEEEC--CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCHHHHHHHHHCCCCCCCCH---
T ss_conf 96457899967--76558999999998799766677767431155899997999-9666006789984325314036---
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEE---EEECCCCCHHH-CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 78860488789774279917999999725678---87547997312-118897463178899999983789669971652
Q T0533 62 SVEGGVTATLDAIATGQELRIIREALVPITFV---LVARPGVELSD-IKRISTHGHAWAQCRLWVDEHLPNADYVPGSST 137 (313)
Q Consensus 62 S~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~---L~~~~~~~l~~-I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~ST 137 (313)
.|.|.+ ++-.+..-..|....| +.+.++..... -.+|.|...-+. ++|++++.-+++++...-.
T Consensus 75 ---------~D~l~E-~~~~v~~l~dL~~G~c~l~vA~~~~~~~~~~~~rIATkyp~it--~~~f~~~gi~~~ii~~~Ga 142 (214)
T 2vd2_A 75 ---------KDVMLE-EERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVA--SSYFREQGEQVEIIKLNGS 142 (214)
T ss_dssp ---------THHHHS-CSCSSEEEEECTTSCCEEEEEECTTCCCCSSSCEEEESCHHHH--HHHHHHHCCCCEEEECCSC
T ss_pred ---------HHHHCC-CCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCEEEECHHHHH--HHHHHHCCCCEEEEECCCH
T ss_conf ---------756474-1456657775566856899973485332564546875203389--9999983995489962431
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q T0533 138 AASAMGL 144 (313)
Q Consensus 138 a~Aa~~v 144 (313)
.+.|-..
T Consensus 143 vE~ap~~ 149 (214)
T 2vd2_A 143 IELAPLI 149 (214)
T ss_dssp TTHHHHT
T ss_pred HHHHCCC
T ss_conf 2330468
No 27
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=84.62 E-value=1.7 Score=21.71 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCCCHHH---HHHHHHCCC--CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHC-
Q ss_conf 776553888089862899---999996389--99606035998999999854995787760330788604887897742-
Q T0533 3 AMSAVTYTFLGPQGTFTE---AALMQVPGA--ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIAT- 76 (313)
Q Consensus 3 ~m~~~~iayLGP~GSfS~---~AA~~~~~~--~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~- 76 (313)
..+.+||++.. |.+++ .++...+.. -+++++++.+..+..+|+.+|++|.+... -.+.++...+
T Consensus 21 ~~~~l~iG~~~--~~~~~~~~~~~~~~~~k~Gi~Ve~v~F~d~~~~n~AL~~G~ID~n~~q--------~~p~l~~~~~~ 90 (275)
T 3gxa_A 21 AKKEIVFGTTV--GDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQ--------HKPYLDDFKKE 90 (275)
T ss_dssp --CEEEEEEET--THHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEE--------CHHHHHHHHHH
T ss_pred CCCEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEECCC--------CHHHHHHHHHH
T ss_conf 88539998506--976999999989999964987999995883478899866996544157--------88999999997
Q ss_pred -CCCCEEEEEEEEEEEEEEEECCCCCHHHC
Q ss_conf -79917999999725678875479973121
Q T0533 77 -GQELRIIREALVPITFVLVARPGVELSDI 105 (313)
Q Consensus 77 -~~~l~Iv~E~~l~I~~~L~~~~~~~l~~I 105 (313)
..++..++.+.. .-+.|.++.-.+++++
T Consensus 91 ~~~~lv~v~~~~~-~~~~lys~k~ksi~dl 119 (275)
T 3gxa_A 91 HNLDITEVFQVPT-APLGLYPGKLKSLEEV 119 (275)
T ss_dssp HTCCEEEEEECCB-CCCEEEESSCCCGGGC
T ss_pred CCCCEEEEEEECC-CCEEEECCCCCCHHHC
T ss_conf 6996799865000-5526652576766570
No 28
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, PSI-2, protein structure initiative; 2.75A {Neisseria meningitidis MC58}
Probab=84.52 E-value=1.3 Score=22.63 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 7871179999999997389556764125888984569999986588838899999999875
Q T0533 210 EDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
Q Consensus 210 ~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~ 270 (313)
++.||...++++.+++.|||+-.|- ...-.-.|.|+ +...++|+..|.+.
T Consensus 114 ~~~~gvaakif~~L~~~~Ini~~is-----tSe~~IS~vV~------~~d~~kAv~~LH~~ 163 (167)
T 2re1_A 114 RSHVGVAAKIFRTLAEEGINIQMIS-----TSEIKVSVLID------EKYMELATRVLHKA 163 (167)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCCEEE-----ECSSEEEEEEE------GGGHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEE-----CCCCEEEEEEE------HHHHHHHHHHHHHH
T ss_conf 0388707799999998899589998-----25678999982------89999999999986
No 29
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1
Probab=84.11 E-value=1.4 Score=22.40 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCCCEEEEECCCCCHH-HHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 7655388808986289-999999638999606035998999999854995787760
Q T0533 4 MSAVTYTFLGPQGTFT-EAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVP 58 (313)
Q Consensus 4 m~~~~iayLGP~GSfS-~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvP 58 (313)
||.+||+.|.=.|+|. |..+++..+..+.+.....+.+++ ..+|.-|||
T Consensus 1 ~~~~~Igvl~~~Gn~~~h~~~l~~lg~~~~~v~~v~~~~~l------~~~D~lIlP 50 (227)
T 2abw_A 1 MSEITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDL------GLCDGLVIP 50 (227)
T ss_dssp -CCEEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHH------HTCSEEEEC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHH------HCCCEEEEC
T ss_conf 99878999966875999999999749985289990999998------438989978
No 30
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=81.94 E-value=2.4 Score=20.82 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCC--CEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH--CCCCC
Q ss_conf 655388808986289999999638999--60603599899999985499578776033078860488789774--27991
Q T0533 5 SAVTYTFLGPQGTFTEAALMQVPGAAD--ATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIA--TGQEL 80 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~~~~~~~--~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~--~~~~l 80 (313)
+.+||+|+.-..+-=..-+..+|...+ ++++.+.+-.+..+|+.+|++|.+..- +. +.+-... ...++
T Consensus 3 ~tiriG~~~~~~~~~~~~~k~~~~k~Gl~Ve~~~F~~g~~~~~Al~sG~iD~~~~~-------~~-~~l~~~~~~~~~~~ 74 (241)
T 1xs5_A 3 ETVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQ-------HV-PHMQQFNQEHNGDL 74 (241)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEE-------EH-HHHHHHHHHHTCCE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEECCC-------CH-HHHHHHHHHCCCCE
T ss_conf 44999962798299999999999974987999982780668999975997666247-------79-99999998679868
Q ss_pred EEEEEEEEEEEEEEEECCCCCHHHC
Q ss_conf 7999999725678875479973121
Q T0533 81 RIIREALVPITFVLVARPGVELSDI 105 (313)
Q Consensus 81 ~Iv~E~~l~I~~~L~~~~~~~l~~I 105 (313)
.+++.... -.+.|++++..++.+.
T Consensus 75 v~v~~~~~-~~~~l~~~~~~~~~d~ 98 (241)
T 1xs5_A 75 VSVGNVHV-EPLALYSRTYRHVSDF 98 (241)
T ss_dssp EEEEEEEE-CCCEEECSSCCSGGGC
T ss_pred EEEEECCC-CCEEEEECCCCCHHHH
T ss_conf 99975154-4158985687666574
No 31
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=80.82 E-value=2.6 Score=20.57 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=35.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2789998537871179999999997389556764125888984569999986588838899999999875
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~ 270 (313)
|.+++=.--.+.||...++...+++.|||+..|-+ ..-.-.|.|+ +...++|++.|.+.
T Consensus 97 kVSvVG~gm~~~~Gvaarif~aL~~~~Ini~~Ist-----Se~~IS~vV~------~~d~~~Av~~LH~~ 155 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT-----SEVRISVIIP------AEYAEAALRAVHQA 155 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE-----CSSEEEEEEE------GGGHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC-----CCCEEEEEEE------HHHHHHHHHHHHHH
T ss_conf 99982677356988832899999978997799992-----6887999985------89999999999998
No 32
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=79.88 E-value=2.8 Score=20.38 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCC----CCHHHCE
Q ss_conf 960603599899999985499578776033078860488789774279917999999725678875479----9731211
Q T0533 31 DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPG----VELSDIK 106 (313)
Q Consensus 31 ~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~----~~l~~I~ 106 (313)
..++++ .++..++..+..|.+|..+-++-.+- +-.+.+.-...... ....++.+.+ .++++++
T Consensus 44 ~~~~~~-~~~~~~~~~l~~~~~d~~~~~~~~~~-----~r~~~~~~s~p~~~-------~~~~~~~~~~~~~~~~~~dl~ 110 (239)
T 1lst_A 44 KCTWVA-SDFDALIPSLKAKKIDAIISSLSITD-----KRQQEIAFSDKLYA-------ADSRLIAAKGSPIQPTLESLK 110 (239)
T ss_dssp EEEEEE-CCGGGHHHHHHTTSCSEECSSCBCCH-----HHHHHCEECSCSBC-------CCEEEEEETTCCCCSSHHHHT
T ss_pred CEEEEE-ECCHHHHHHHHCCCCCEEECCCCCCH-----HHHHHHCCCCCEEE-------CCCCEEEECCCCCCCCHHHHC
T ss_conf 679998-03333568986688767954787897-----88754023465230-------364035653887789989978
Q ss_pred --EEEECCCHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf --8897463178899999983--789669971652899999983578
Q T0533 107 --RISTHGHAWAQCRLWVDEH--LPNADYVPGSSTAASAMGLLEDDA 149 (313)
Q Consensus 107 --~V~SHPqal~QC~~fL~~~--~p~~~~v~~~STa~Aa~~v~~~~~ 149 (313)
+|..-.-.... .++.+. .+++..+.+.+...+.+.+..+..
T Consensus 111 g~~i~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~grv 155 (239)
T 1lst_A 111 GKHVGVLQGSTQE--AYANDNWRTKGVDVVAYANQDLIYSDLTAGRL 155 (239)
T ss_dssp TCEEEEETTSHHH--HHHHHHTGGGTCEEEEESSHHHHHHHHHTTSC
T ss_pred CCEEEEECCCHHH--HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCC
T ss_conf 9989997586488--88888741456650540898999999975983
No 33
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=77.59 E-value=3.3 Score=19.94 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=88.4
Q ss_pred CCEEEEECCCCCHHHHHHHHH--CC----C------------CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCH
Q ss_conf 553888089862899999996--38----9------------99606035998999999854995787760330788604
Q T0533 6 AVTYTFLGPQGTFTEAALMQV--PG----A------------ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGV 67 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~--~~----~------------~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V 67 (313)
+++||. |+|.-.+.+..-+ .| . .+.+++ +-.-.|+-..|+.|.+|+||+-
T Consensus 5 ~l~iAl--PKGRL~~~~~~ll~~~gi~~~~~~~rr~~~~~~~~~i~~~-~vR~~DIp~~V~~G~~DlGI~G--------- 72 (206)
T 1ve4_A 5 ALTVAL--PKGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALL-ELRNKDVPIYVDLGIAEIGVVG--------- 72 (206)
T ss_dssp SEEEEE--ECSTTHHHHHHHHHHTTCCCCCC-----CEECCTTSEEEE-EECGGGHHHHHHTTSSSEEEEE---------
T ss_pred CEEEEE--CCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEE-EECHHHHHHHHHHHHCCEEEEC---------
T ss_conf 389993--4740589999999987999877888204631688974478-8463777999863004211100---------
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEEEEEEE--ECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 8878977427991799999972567887--54799731211889746317889999998378966997165289999998
Q T0533 68 TATLDAIATGQELRIIREALVPITFVLV--ARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLL 145 (313)
Q Consensus 68 ~~tlD~L~~~~~l~Iv~E~~l~I~~~L~--~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~ 145 (313)
.|.|.+. +-.+..-..|...+|=+ +.+..+....++|.|...-+. ++|++++.-+++++..+...+.|-..-
T Consensus 73 ---~D~l~E~-~~~v~~l~dL~~G~crl~va~~~~~~~~~~rIATkYpnit--~~~~~~~gi~~~ii~l~Gs~E~ap~~g 146 (206)
T 1ve4_A 73 ---KDVLLDS-GRDLFEPVDLGFGACRLSLIRRPGDTGPIRRVATKYPNFT--ARLLKERGWAADVVELSGNIELAAVTG 146 (206)
T ss_dssp ---HHHHHHC-CSCCEEEEECCCSCEEEEEEECTTCCSCCCEEEESCHHHH--HHHHHHTTCCCEEEECSSCTHHHHHTT
T ss_pred ---HHHHHHC-CCCCEEEEEEEEEEEEEEEEEEECCCCCCCEEHHHHHHHH--HHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf ---2677625-9974075654576379999998612687443047899999--999986499622998543533566688
Q ss_pred HCCCCCCEECCCHHHHHHHCCCEEEE
Q ss_conf 35785311001347888751971564
Q T0533 146 EDDAPYEAAICAPLIAAEQPGLNVLA 171 (313)
Q Consensus 146 ~~~~~~~aaa~~~~~aa~~ygL~il~ 171 (313)
-.. ...=+.++-..-+..||.+++
T Consensus 147 ~AD--~IvDiv~TG~TLk~N~L~~i~ 170 (206)
T 1ve4_A 147 LAD--AVVDVVQTGATLRAAGLVEVE 170 (206)
T ss_dssp SSS--EEEEEESSSHHHHHTTCEEEE
T ss_pred CEE--EEEEEECCHHHHHHCCCEEEE
T ss_conf 402--666530268899986996433
No 34
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, allostery, S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=75.88 E-value=3.7 Score=19.65 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCC--C---C-C
Q ss_conf 78966997165289999998357853110013478887519715640346777871589997157646787--8---8-8
Q T0533 126 LPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER--T---G-A 199 (313)
Q Consensus 126 ~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~--~---~-~ 199 (313)
.|+++.++.-|-.+|.+...-+..-- -+....-+..++.++.-+|.-|....-|+- .+....... . . .
T Consensus 266 v~~a~~i~~lsy~EA~eLa~~GakVl---Hp~ai~p~~~~~Ipi~I~nt~~p~~~GT~I---~~~~~~~~~~v~~Ia~~~ 339 (510)
T 2cdq_A 266 YKRATPVPYLTFDEAAELAYFGAQVL---HPQSMRPAREGEIPVRVKNSYNPKAPGTII---TKTRDMTKSILTSIVLKR 339 (510)
T ss_dssp CTTCCBCCEEEHHHHHHHHHHHSSCC---CHHHHHHHHHHTCCEEEEETTSTTSCCEEE---ESCCCCTTCCEEEEEEEE
T ss_pred CCCCCCEEEECHHHHHHHHHHCCCCC---CHHHHHHHHCCCCEEEEEECCCCCCCCCEE---ECCCCCCCCCCCCHHHCC
T ss_conf 86642012425999999986332434---368899977068369998357777777268---502334432121100024
Q ss_pred CEEEEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCC----CHHHHHHHHHHHHHC
Q ss_conf 5278999853--78711799999999973895567641258889845699999865888----388999999998751
Q T0533 200 DKTTVVVPLP--EDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHAT----DSRVADALAGLHRIS 271 (313)
Q Consensus 200 ~ktsi~~~~~--~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~----d~~v~~al~eL~~~~ 271 (313)
+-+.+-+... .+.||-+.++++.|+++|||.-.|-+- .....|+++..--.. ...+...++++.+.+
T Consensus 340 ~v~~I~i~~~~~~~~~G~~arIf~~La~~gI~VdmIsqS-----e~sis~~i~~~~~~~~~~~~~~l~~~~~~l~~~~ 412 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS-----EVSISLTLDPSKLWSRELIQQELDHVVEELEKIA 412 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE-----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCC-----CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 124641146666887668888657998717540220266-----6544524245776559999999999999750267
No 35
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=75.76 E-value=3.7 Score=19.63 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=82.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCC---CCC-CE
Q ss_conf 78966997165289999998357853110013478887519715640346777871589997157646787---888-52
Q T0533 126 LPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER---TGA-DK 201 (313)
Q Consensus 126 ~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~---~~~-~k 201 (313)
.|+++.++.-|-.+|.+...-+..-- -+.+..-+..||.++.-+|..+....-|. |..+....+.- +.. +.
T Consensus 234 V~~Ar~i~~lsy~EA~ELa~~GakVL---Hp~ai~p~~~~~Ipi~v~nt~~p~~~GT~--I~~~~~~~~~vk~i~~~~~~ 308 (449)
T 2j0w_A 234 VSAAKRIDEIAFAEAAEMATFGAKVL---HPATLLPAVRSDIPVFVGSSKDPRAGGTL--VCNKTENPPLFRALALRRNQ 308 (449)
T ss_dssp CTTCCEESEEEHHHHHHHHHTTCTTS---CTTTHHHHHHHTCCEEEEESSCTTSCCEE--EESCCSSCCSEEEEEEEEEE
T ss_pred CCCCEEECEECHHHHHHHHHCCCCCC---CHHHHHHHHHCCCEEEEEECCCCCCCCEE--EEECCCCCCCEEECCCCCCC
T ss_conf 77654633206899999984587665---84679999863972899825899999769--98245566516613202652
Q ss_pred EEEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCC---CHHHHHHHHHHHHHC
Q ss_conf 78999853--78711799999999973895567641258889845699999865888---388999999998751
Q T0533 202 TTVVVPLP--EDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHAT---DSRVADALAGLHRIS 271 (313)
Q Consensus 202 tsi~~~~~--~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~---d~~v~~al~eL~~~~ 271 (313)
+.+-+... .+.||-+.++++.|++++||.-.|-+-. -+..|.++...... ....++.+.++...+
T Consensus 309 ~~i~v~~~~~~~~~g~~~~if~~l~~~~I~v~~i~~s~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (449)
T 2j0w_A 309 TLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSE-----VSVALTLDTTGSTSTGDTLLTQSLLMELSALC 378 (449)
T ss_dssp EEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEET-----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 27999424577767659999889985591699997043-----32343566420023677999999999712678
No 36
>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV}
Probab=73.99 E-value=4.1 Score=19.34 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCCHHHHHHHH--HCC----CCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 655388808986289999999--638----99960603599899999985499578776033078860488789774279
Q T0533 5 SAVTYTFLGPQGTFTEAALMQ--VPG----AADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQ 78 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~--~~~----~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~ 78 (313)
..+||+|+.... .-..|++ +|. +-+++++.+.+-.++++++.+|++|+|.... .+.+-......
T Consensus 29 ~~lrIg~~~~~~--~~~va~~~G~f~~~~~~~~v~~~~f~~g~~~~~al~sG~~D~~~~~~--------~~~~~~~~~G~ 98 (324)
T 3e4r_A 29 AQLRIGYQKAVS--SLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGD--------IPPLFAQAAGA 98 (324)
T ss_dssp SEEEEEECTTCH--HHHHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHTTSCSEEEEES--------HHHHHHHHTTC
T ss_pred CEEEEEEECCCC--HHHHHHHHCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEECCH--------HHHHHHHHCCC
T ss_conf 759999606854--89999872979883899837999679759999999869977996176--------99999997799
Q ss_pred CCEEEEEEEE-EEEEEEEECCCC---CHHHC--EEEEECCCHH--HHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHC
Q ss_conf 9179999997-256788754799---73121--1889746317--889999998378---96699716528999999835
Q T0533 79 ELRIIREALV-PITFVLVARPGV---ELSDI--KRISTHGHAW--AQCRLWVDEHLP---NADYVPGSSTAASAMGLLED 147 (313)
Q Consensus 79 ~l~Iv~E~~l-~I~~~L~~~~~~---~l~~I--~~V~SHPqal--~QC~~fL~~~~p---~~~~v~~~STa~Aa~~v~~~ 147 (313)
++++++-..- +-...++++++. +++|+ |+|..++-.. .....+|+++.. +++.+... .+.....+..+
T Consensus 99 ~~~~v~~~~~~~~~~~i~v~~~~~I~s~~DLkGK~Ia~~~g~~~~~~l~~~L~~~Gl~~~dv~~v~~~-~~~~~~al~~G 177 (324)
T 3e4r_A 99 DLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLS-PANARAAFAAG 177 (324)
T ss_dssp CEEEEEEECCCGGGEEEEEETTCCCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECC-HHHHHHHHHTT
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCEEECC-HHHHHHHHHCC
T ss_conf 86999988638984289980888888967807872210378602778899999869981105400158-16677777503
Q ss_pred CCCCCEECCCH
Q ss_conf 78531100134
Q T0533 148 DAPYEAAICAP 158 (313)
Q Consensus 148 ~~~~~aaa~~~ 158 (313)
. -+.+....+
T Consensus 178 ~-vDa~~~~~p 187 (324)
T 3e4r_A 178 Q-VDAWAIWDP 187 (324)
T ss_dssp C-CSEEEEETT
T ss_pred C-CCEEEEEHH
T ss_conf 7-238997018
No 37
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=73.89 E-value=4.1 Score=19.33 Aligned_cols=104 Identities=8% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC---CHHHCE-
Q ss_conf 9606035998999999854995787760330788604887897742799179999997256788754799---731211-
Q T0533 31 DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV---ELSDIK- 106 (313)
Q Consensus 31 ~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~---~l~~I~- 106 (313)
..++++. ++.+.+..+.+|.+|..+-++-. |.+.- . ......-++.....|+++.+. +++|++
T Consensus 87 ~i~~~~~-~~~~~~~~l~~g~~d~~~~~~~~--------t~~R~---~-~~~fs~p~~~~~~~lv~~kd~~i~s~~dL~g 153 (292)
T 1xt8_A 87 KVQFVLV-EAANRVEFLKSNKVDIILANFTQ--------TPQRA---E-QVDFCSPYMKVALGVAVPKDSNITSVEDLKD 153 (292)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHHH---T-TEEECCCCEEEEEEEEEETTCCCCSSGGGTT
T ss_pred EEEEEEC-CHHHHHHHHCCCCCCCCCCCCCC--------CCCCC---C-CCCCCCCCCCCCCEEEEECCCCCCCHHHHCC
T ss_conf 4666641-28777554123433421333555--------53301---2-3566655211341258851640110555056
Q ss_pred -EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf -8897463178899999983789669971652899999983578
Q T0533 107 -RISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDA 149 (313)
Q Consensus 107 -~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~ 149 (313)
+|-. ...-.. ..|++++.|+++.+.+.+..++.+.+..+.-
T Consensus 154 k~I~v-~~g~~~-~~~l~~~~~~~~~v~~~~~~~~~~~l~~G~v 195 (292)
T 1xt8_A 154 KTLLL-NKGTTA-DAYFTQNYPNIKTLKYDQNTETFAALMDKRG 195 (292)
T ss_dssp SEEEE-ETTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTSS
T ss_pred CEEEE-CCCCHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
T ss_conf 12464-477638-8776641003321023332321232332101
No 38
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=72.87 E-value=4.4 Score=19.17 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC---CHHH--
Q ss_conf 99606035998999999854995787760330788604887897742799179999997256788754799---7312--
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV---ELSD-- 104 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~---~l~~-- 104 (313)
-..++++. ++...+.++++|.+|..+-++- .+-+.- ..+.-...+.......+..+.+. ++++
T Consensus 50 ~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 117 (242)
T 3del_B 50 KTLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPSRL---KEILMIPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp CEEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHHHH---TTEEEEEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred CCEEEEEC-CHHHHHHHHHCCCCCEEECCCC--------CCHHHC---CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHC
T ss_conf 97799972-7899999997698670301343--------545440---22246764223441368864112101033432
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 118897463178899999983789669971652899999983578531100134788875
Q T0533 105 IKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQ 164 (313)
Q Consensus 105 I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ 164 (313)
-++|... ..-.+ ..|+++ +|+++++.+.+..++.+.+..+.-. +++. +...+..
T Consensus 118 ~k~Igv~-~gs~~-~~~l~~-~~~~~v~~~~~~~~~~~~L~~griD--~~i~-~~~~~~~ 171 (242)
T 3del_B 118 YRSVAVQ-TGTYQ-EAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSP--VAVL-EPSIAQV 171 (242)
T ss_dssp SSCEEEE-TTSHH-HHHHHH-STTCCEEEESSHHHHHHHHHTTSSS--EEEE-CHHHHHH
T ss_pred CCCEEEE-CCCHH-HHHHHH-CCCCCCCCCCCHHHHHHHHCCCCEE--EEEE-CHHHHHH
T ss_conf 4332474-78666-899986-4256532222203432101169667--9996-6999999
No 39
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp}
Probab=72.86 E-value=4.4 Score=19.17 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=64.2
Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCC---HHHC--
Q ss_conf 96060359989999998549957877603307886048878977427991799999972567887547997---3121--
Q T0533 31 DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVE---LSDI-- 105 (313)
Q Consensus 31 ~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~~---l~~I-- 105 (313)
..++++. .+.+++.++++|++|..+-.+..+-+= ...+ . ..+-++....+++.+.+.. ++++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~~~--~--------fs~Py~~~~~~~~~~~~~~~~~~~dl~g 110 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDER--KKHF--I--------FSLPYMESNSQYITTVDSKISTFDDLHG 110 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTG--GGTC--E--------ECCCSBCCEEEEEEETTCSCCSGGGGTT
T ss_pred CEEEEEC-CHHHHHHHHHCCCCCEEEECCCCCHHH--HHCE--E--------CCCCEEECCEEEEEECCCCCCCHHHHCC
T ss_conf 7699977-999999999869986784316799788--7050--2--------4675241125666505677789789768
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 1889746317889999998378966997165289999998357853110013478887
Q T0533 106 KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAE 163 (313)
Q Consensus 106 ~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~ 163 (313)
++|-...... ...++.+..|..+++.+.+...+.+.+.++.-. +++. ....+.
T Consensus 111 ~~v~v~~g~~--~~~~~~~~~~~~~i~~~~~~~~~~~~L~~grvD--~~i~-~~~~~~ 163 (237)
T 3kzg_A 111 KKIGVRKGTP--YARQVLSENRNNQVIFYELIQDMLLGLSNNQVD--ASLM-DYEAAK 163 (237)
T ss_dssp CEEEEETTST--HHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSS--EEEE-EHHHHH
T ss_pred CCEEEECCCH--HHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCC--EEEE-CHHHHH
T ss_conf 8301117976--888888746674266313127789998769940--9994-499999
No 40
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=72.81 E-value=4.4 Score=19.17 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCE----------E---------ECCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 5538880898628999999963899960----------6---------03599899999985499578776033078860
Q T0533 6 AVTYTFLGPQGTFTEAALMQVPGAADAT----------R---------IPCTNVNTALERVRAGEADAAMVPIENSVEGG 66 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~~~~~~~~----------~---------v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~ 66 (313)
++|||. |+|.-.+.+..-+ ...+.. + +.+-.-.|+-..|+.|.+|+||+-
T Consensus 1 Ml~iAl--pKGRl~~~~~~ll-~~~gl~~~~~~~~~r~l~~~~~~~i~v~~~r~~DIp~~V~~G~~DlGI~G-------- 69 (208)
T 1z7m_E 1 MIKIAI--TKGRIQKQVTKLL-ENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEHGIVDIGFVG-------- 69 (208)
T ss_dssp CCCEEE--ETTHHHHHHHHHH-HTTTCCCCCC----CCSEECCTTSCCEEEECHHHHHHHHHTTSCSEEEEE--------
T ss_pred CEEEEE--CCCCCHHHHHHHH-HHCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHCCCCHHHHH--------
T ss_conf 968995--6762389999999-98799865577877278616999869999752887999972357410005--------
Q ss_pred HHHHHHHHHCCCCC-EEEEEEEEEEEEEEEECCCC------CHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 48878977427991-79999997256788754799------731211889746317889999998378966997165289
Q T0533 67 VTATLDAIATGQEL-RIIREALVPITFVLVARPGV------ELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAA 139 (313)
Q Consensus 67 V~~tlD~L~~~~~l-~Iv~E~~l~I~~~L~~~~~~------~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~ 139 (313)
+|.+.+. +. .+..-..+...+|-++.... +...-++|.+-..-+. ++|++++.-+++++......+
T Consensus 70 ----~D~l~E~-~~~~~~~l~~l~~G~c~l~va~p~~~~~~~~~~~~rIATkYpnit--~~ff~~~gi~~~ii~~~GavE 142 (208)
T 1z7m_E 70 ----KDTLDEN-DFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVT--KKYFAQKQEDIEIIKLEGSVE 142 (208)
T ss_dssp ----HHHHHHS-SCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESCHHHH--HHHHHHTTCCEEEEECSSCTT
T ss_pred ----HHHHHCC-CCCCEEEEECCCCCCEEEEECCHHCCCCHHCCCCCEEHHHHHHHH--HHHHHHCCCCCEEEEECCCCC
T ss_conf ----7777406-865517650346781799976410032100213657067789999--999986166642787326555
Q ss_pred HHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEE
Q ss_conf 99999835785311001347888751971564034677787158999
Q T0533 140 SAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFIL 186 (313)
Q Consensus 140 Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~i 186 (313)
.|-..- -.....=+.++-..-+..||++++. |-+ -.+|++.
T Consensus 143 ~ap~~G--~AD~IvDivsTG~TLraN~L~~i~~-i~~---ssa~Li~ 183 (208)
T 1z7m_E 143 LGPVVG--LADAIVDIVETGNTLSANGLEVIEK-ISD---ISTRMIV 183 (208)
T ss_dssp HHHHTT--SCSEEEEEESSSHHHHTTTCEEEEE-EEE---CCEEEEE
T ss_pred CCCCCC--CCCEEEEECCCHHHHHHCCCEECCE-EEE---EEEEEEE
T ss_conf 677857--2648386504689999878998513-473---2778999
No 41
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum}
Probab=72.26 E-value=4.5 Score=19.08 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=65.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEE
Q ss_conf 88974631788999999837896699716528999999835785311001347888751971564034677787158999
Q T0533 107 RISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFIL 186 (313)
Q Consensus 107 ~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~i 186 (313)
.+...|.-++.--.-|+++.-+++.+..++.... ... ..+.-+..-.+++........+++.. +..++.
T Consensus 22 ~l~~~~g~~a~iF~~la~~~InVdmI~qs~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~- 90 (178)
T 2dtj_A 22 GISDKPGEAAKVFRALADAEINIDMVLQNVSSVE--------DGT-TDITFTCPRSDGRRAMEILKKLQVQG-NWTNVL- 90 (178)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTT--------TCE-EEEEEEEEHHHHHHHHHHHHTTTTTT-TCSEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCC--------CCE-EEEECCCCHHHHHHHHHHHCCCCCCC-CCCCEE-
T ss_conf 5899860899999999984436223103332112--------311-25530440456666676520111334-432168-
Q ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 71576467878885278999853787117999999999738955676412588898456999998658883889999999
Q T0533 187 VSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAG 266 (313)
Q Consensus 187 i~~~~~~~~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~e 266 (313)
+.+ +..|.+++=.--...||.+.++++.++++|||+..|-+ + .-.-.|.|+ +...++|++.
T Consensus 91 ~~~--------~~a~VsvVG~gm~~~~Gvaakif~aL~~~~Ini~~ist--S---e~~IS~vV~------~~d~~~Av~a 151 (178)
T 2dtj_A 91 YDD--------QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--S---EIRISVLIR------EDDLDAAARA 151 (178)
T ss_dssp EES--------CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--E---TTEEEEEEE------GGGHHHHHHH
T ss_pred EEC--------CCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEC--C---CCEEEEEEE------HHHHHHHHHH
T ss_conf 715--------61268765046456788520899999978998898754--7---777999996------8999999999
Q ss_pred HHHH
Q ss_conf 9875
Q T0533 267 LHRI 270 (313)
Q Consensus 267 L~~~ 270 (313)
|.+.
T Consensus 152 Lh~~ 155 (178)
T 2dtj_A 152 LHEQ 155 (178)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 42
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae}
Probab=71.79 E-value=4.6 Score=19.02 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred EECCCCC---HH-HHH--HHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 8089862---89-999--99963899960603599899999985499578776033078860488789774279917999
Q T0533 11 FLGPQGT---FT-EAA--LMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIR 84 (313)
Q Consensus 11 yLGP~GS---fS-~~A--A~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~ 84 (313)
|+++.|. |. +.+ ..+..| -..++++. ++...+.++++|++|..+-++ ..+-+.- + .+...
T Consensus 25 ~~~~~g~~~G~~~dl~~~ia~~lg-~~v~~~~~-~~~~~~~~l~~g~~D~~~~~~--------~~~~~r~-~--~~~fs- 90 (246)
T 3g41_A 25 YVDAQGEVVGFDIDLAKAISEKLG-KQLEVREF-AFDALILNLKKHRIDAILAGM--------SITPSRQ-K--EIALL- 90 (246)
T ss_dssp EECTTSCEESHHHHHHHHHHHHHT-CEEEEEEC-CGGGHHHHHHTTSSSEECSCC--------BCCHHHH-T--TSEEE-
T ss_pred EECCCCCEEEHHHHHHHHHHHHHC-CCEEEEEC-CHHHHHHHHHCCCCCEEEEEC--------CCCHHHC-C--CCCCC-
T ss_conf 998999788839999999999969-95799965-999999987535788899705--------4787763-5--43433-
Q ss_pred EEEEEEEEEEEECC--CC---CHHHC--EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 99972567887547--99---73121--188974631788999999837896699716528999999835785
Q T0533 85 EALVPITFVLVARP--GV---ELSDI--KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 85 E~~l~I~~~L~~~~--~~---~l~~I--~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
..+......++.++ +. .+++. ++|-. .....++ .|+.+ .|++.++...+...+.+.+..+.-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Vgv-~~gs~~~-~~l~~-~~~~~i~~~~~~~~~~~~L~~GriD 160 (246)
T 3g41_A 91 PYYGDEVQELMVVSKRSLETPVLPLTQYSSVAV-QTGTYQE-HYLLS-QPGICVRSFDSTLEVIMEVRYGKSP 160 (246)
T ss_dssp EEECCCBCEEEEEEETTCCSCSCCGGGSSCEEE-ETTSHHH-HHHHT-STTCCEEEESCHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCEECCCCCCCCCHHHHCCCCEEEE-ECCCHHH-HHHHH-HCCCCEEEEECHHHHHHHHHCCCEE
T ss_conf 001246642000112323120277748987999-5486799-99997-2698189985026666665259567
No 43
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=69.04 E-value=5.3 Score=18.64 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC--CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC---C
Q ss_conf 76553888089862899999996389--996060359989999998549957877603307886048878977427---9
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPGA--ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATG---Q 78 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~~--~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~---~ 78 (313)
.+.+||+|.|+.+..-+ .+...+.. -+++++.+.+..+..+|+.+|++|.+... ..+.++...+. .
T Consensus 38 ~k~i~iG~~~~~~~~~~-~v~~~~kk~Gi~Ve~~~F~d~~~~n~AL~~G~ID~n~~q--------~~p~l~~~~k~~~~~ 108 (295)
T 1p99_A 38 DKKVTIGVASNDTKAWE-KVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQ--------HFAFLDQYKKAHKGT 108 (295)
T ss_dssp --CEEEEESSSCCHHHH-HHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEE--------EHHHHHHHHHHCTTC
T ss_pred CCEEEEEECCCCHHHHH-HHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEECC--------CHHHHHHHHHHCCCC
T ss_conf 96399996798589999-999999974987999983782678999875997757427--------899999999777995
Q ss_pred CCEEEEEEEEEEEEEEEECCCCCHHHC
Q ss_conf 917999999725678875479973121
Q T0533 79 ELRIIREALVPITFVLVARPGVELSDI 105 (313)
Q Consensus 79 ~l~Iv~E~~l~I~~~L~~~~~~~l~~I 105 (313)
.+.+++..... ...+.+....++.++
T Consensus 109 ~l~~v~~~~~~-~~~~~s~k~ksl~dl 134 (295)
T 1p99_A 109 KISALSTTVLA-PLGIYSDKIKDVKKV 134 (295)
T ss_dssp CEEEEEEEEEC-CCEEECSSCSCGGGC
T ss_pred EEEEECCCCCC-CEEEECCCCCCHHHC
T ss_conf 49994134435-336652565642013
No 44
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=68.02 E-value=5.6 Score=18.51 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCH---HHC-
Q ss_conf 9960603599899999985499578776033078860488789774279917999999725678875479973---121-
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVEL---SDI- 105 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~~l---~~I- 105 (313)
-..++++. ++..++..+++|++|..+-++-. ++.-+..+..+ .-++.....++++.+..+ +++
T Consensus 80 ~~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~------t~eR~~~~~fs------~py~~~~~~~~~~~~~~i~~~~~l~ 146 (272)
T 2pvu_A 80 LDYELKNI-GWDPLFASLQSKEVDMGISGITI------TDERKQSYDFS------DPYFEATQVILVKQGSPVKNALDLK 146 (272)
T ss_dssp CCEEEEEC-CHHHHHHHHHHTSSSEECSSCBC------CHHHHTTEEEC------SCCEEECEEEEEETTCCCCSGGGGT
T ss_pred CCEEEEEC-CHHHHHHHHHCCCCCEEEECCCC------CHHHHHHCCCC------CCCCCCCEEEEEECCCCCCCHHHHC
T ss_conf 96599977-99999999976998778421546------88885422467------7710553689974487557777856
Q ss_pred -EEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCC
Q ss_conf -1889746317889999998378-9669971652899999983578
Q T0533 106 -KRISTHGHAWAQCRLWVDEHLP-NADYVPGSSTAASAMGLLEDDA 149 (313)
Q Consensus 106 -~~V~SHPqal~QC~~fL~~~~p-~~~~v~~~STa~Aa~~v~~~~~ 149 (313)
++|.... .- ....++++..+ +..++...++..+.+.+..+.-
T Consensus 147 g~~v~v~~-g~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~Grv 190 (272)
T 2pvu_A 147 GKTIGVQN-AT-TGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGV 190 (272)
T ss_dssp TSCEEEET-TS-HHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSC
T ss_pred CCEECCCC-CC-HHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC
T ss_conf 87550467-87-0999999874338744204207999999976980
No 45
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=64.93 E-value=6.4 Score=18.13 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCCHHHHHHHH--HCC----CCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 655388808986289999999--638----99960603599899999985499578776033078860488789774279
Q T0533 5 SAVTYTFLGPQGTFTEAALMQ--VPG----AADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQ 78 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~--~~~----~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~ 78 (313)
..+||+|+. ++..-.-|.. +|. .-+++++.+.+-.++++++.+|++|+|... ....+-......
T Consensus 3 ~~lrigy~~--~~~~~~va~~~g~f~~~g~~~~V~~~~f~~g~~~~~al~sG~iD~a~~~--------~~~~~~~~~~G~ 72 (308)
T 2x26_A 3 EALRIGYQK--GSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTG--------DIPPIFAQAAGA 72 (308)
T ss_dssp SEEEEEECT--TCHHHHHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEEC--------SHHHHHHHHTTC
T ss_pred CEEEEEECC--CCHHHHHHHHCCHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEC--------HHHHHHHHHCCC
T ss_conf 639998578--8618999986198877189981799978976999999985996889967--------399999998799
Q ss_pred CCEEEEEEEEEE-EEEEEECCCC---CHHHC--EEEEECCCH--HHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHC
Q ss_conf 917999999725-6788754799---73121--188974631--7889999998378---96699716528999999835
Q T0533 79 ELRIIREALVPI-TFVLVARPGV---ELSDI--KRISTHGHA--WAQCRLWVDEHLP---NADYVPGSSTAASAMGLLED 147 (313)
Q Consensus 79 ~l~Iv~E~~l~I-~~~L~~~~~~---~l~~I--~~V~SHPqa--l~QC~~fL~~~~p---~~~~v~~~STa~Aa~~v~~~ 147 (313)
++++++-....- ...++.+++. +++|+ |+|...+-. ..-...+|+++.. +++.+... .+.....+..+
T Consensus 73 ~~~~i~~~~~~~~~~~v~~~~~s~i~s~~DLkGK~Ia~~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~~-~~~~~~al~~G 151 (308)
T 2x26_A 73 DLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLT-PADARAAFQQG 151 (308)
T ss_dssp CEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECC-HHHHHHHHHTT
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECC-CHHHHHHHHCC
T ss_conf 97999997057734899981888889989957982104488458999999999828983242554268-16678887341
Q ss_pred CC
Q ss_conf 78
Q T0533 148 DA 149 (313)
Q Consensus 148 ~~ 149 (313)
.-
T Consensus 152 ~v 153 (308)
T 2x26_A 152 NV 153 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 47
No 46
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=61.87 E-value=7.3 Score=17.77 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=61.5
Q ss_pred HHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHH-HHHCCCCCEEEEEEEEEEEEEEEECCC---
Q ss_conf 9963899960603599899999985499578776033078860488789-774279917999999725678875479---
Q T0533 24 MQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLD-AIATGQELRIIREALVPITFVLVARPG--- 99 (313)
Q Consensus 24 ~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD-~L~~~~~l~Iv~E~~l~I~~~L~~~~~--- 99 (313)
.+..| -..+++++ ++.+++.++.+|++|..+-++. ..+.-+ .+.-..+. +.....++.+.+
T Consensus 58 ~~~lg-~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~------~~~~r~~~~~~s~p~-------~~~~~~~~~~~~~~~ 122 (271)
T 2iee_A 58 AKRLG-LKVEFKEM-GIDGMLTAVNSGQVDAAANDID------VTKDREEKFAFSTPY-------KYSYGTAIVRKDDLS 122 (271)
T ss_dssp HHHTT-CEEEEEEC-CSTTHHHHHHHTSSSEECSSCB------CCHHHHTTEEECCCS-------EEEEEEEEECTTTGG
T ss_pred HHHHC-CCCCCCCC-CHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHCCCCCC-------CCCCCCEEECCCCCC
T ss_conf 99829-97313117-9999999997699766754303------677886641256763-------113651111035776
Q ss_pred --CCHHHCE--EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf --9731211--88974631788999999837896699716528999999835785
Q T0533 100 --VELSDIK--RISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 100 --~~l~~I~--~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
.++++++ +|..-.- .. ..+++.++.|...+....+..++.+.+..+...
T Consensus 123 ~i~~~~dl~g~~I~v~~g-~~-~~~~l~~~~~~~~i~~~~s~~~~~~~L~~GrvD 175 (271)
T 2iee_A 123 GIKTLKDLKGKKAAGAAT-TV-YMEVARKYGAKEVIYDNATNEQYLKDVANGRTD 175 (271)
T ss_dssp GCSSGGGGTTCEEESCTT-SH-HHHHHHHTTCEEEECSSCCHHHHHHHHHHTSSC
T ss_pred CCCCHHHHCCCCCEECCC-CH-HHHHHHHHCCCCEEEECCHHHHHHHHHHCCCEE
T ss_conf 779878837862020357-28-999999727775587302078899999779643
No 47
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2, protein structure initiative; 2.31A {Porphyromonas gingivalis}
Probab=56.84 E-value=8.9 Score=17.23 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEE
Q ss_conf 871179999999997389556
Q T0533 211 DHPGALMEILDQFASRGVNLS 231 (313)
Q Consensus 211 d~pGaL~~vL~~F~~~gINLt 231 (313)
+.||.+.++++.+...+|.|.
T Consensus 100 ~~~gi~~~i~~~L~~i~v~~i 120 (157)
T 3mah_A 100 DNVGFEARIINALKGVPVRMI 120 (157)
T ss_dssp --CCHHHHHHHTTTTSCCSEE
T ss_pred CCCCHHHHHHHHHCCCCEEEE
T ss_conf 688648799999658983999
No 48
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=56.58 E-value=9 Score=17.20 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=63.4
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCC---CCHHHC-
Q ss_conf 9960603599899999985499578776033078860488789774279917999999725678875479---973121-
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPG---VELSDI- 105 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~---~~l~~I- 105 (313)
...++++. +....+.++.+|.+|.++-..-.+. +....+.-.......... ..++.... ..++++
T Consensus 54 ~~~~~~~~-~~~~~~~~~~~g~~d~~~~~~~~t~-----~~~~~~~~s~p~~~~~~~-----~~~~~~~~~~~~~~~~~~ 122 (239)
T 3kbr_A 54 AKLVVVPT-SWPNLMRDFADDRFDIAMSGISINL-----ERQRQAYFSIPYLRDGKT-----PITLCSEEARFQTLEQID 122 (239)
T ss_dssp CEEEEEEC-CTTTHHHHHHTTCCSEECSSCBCCH-----HHHTTCEECSCSEEECEE-----EEEEGGGGGGGSSHHHHS
T ss_pred CCCCEEEC-CHHHHHHHHHCCCCCCCCCCCCCCH-----HHHHHCCCCCEEEECCCE-----EEEEECCCCCCCCHHHHH
T ss_conf 75641454-6788524431122120024456887-----772110144214641523-----565203567643012331
Q ss_pred ---EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf ---188974631788999999837896699716528999999835785311001347888
Q T0533 106 ---KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAA 162 (313)
Q Consensus 106 ---~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa 162 (313)
.+|........ ..|++++.|+++++.+.|+..+.+++.++.-. +++. ....+
T Consensus 123 ~~~~~i~v~~g~~~--~~~~~~~~~~~~i~~~~~~~~~l~~l~~GrvD--~~i~-~~~~~ 177 (239)
T 3kbr_A 123 QPGVTAIVNPGGTN--EKFARANLKKARILVHPDNVTIFQQIVDGKAD--LMMT-DAIEA 177 (239)
T ss_dssp STTCEEEECTTSHH--HHHHHHHCSSSEEEECCCTTTHHHHHHTTSCS--EEEE-EHHHH
T ss_pred CCCCCEEECCCCCC--CCHHHHCCCCCEEEEHHHHHHHHHHHHHCCCC--CCCC-CHHHH
T ss_conf 26863132244322--20111003330122012488999998620410--1026-58999
No 49
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=55.13 E-value=9.5 Score=17.05 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=73.3
Q ss_pred EEECCCC---CHHHHHHHHH---CCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 8808986---2899999996---389996060359989999998549957877603307886048878977427991799
Q T0533 10 TFLGPQG---TFTEAALMQV---PGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRII 83 (313)
Q Consensus 10 ayLGP~G---SfS~~AA~~~---~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv 83 (313)
.|+.+.| -|.-.-+... .|-. ...+...++..++.++++|++|..+-.+ .+.+.....+..
T Consensus 26 ~~~~~~G~~~G~~~dl~~~ia~~lg~~-~~~~~~~~~~~~~~~l~~G~~D~~~~~~------~~~~~r~~~~~f------ 92 (257)
T 2q88_A 26 TAVGADGKVSGAAPDVAREIFKRLGVA-DVVASISEYGAMIPGLQAGRHDAITAGL------FMKPERCAAVAY------ 92 (257)
T ss_dssp CEECTTCCEESHHHHHHHHHHHHTTCC-EEEEEECCGGGHHHHHHTTSCSEECSCC------BCCHHHHTTSEE------
T ss_pred EEECCCCCEEEHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHCCCCCEEEEEC------CCCHHHCCEEEE------
T ss_conf 589999988778999999999993997-7998469999999999769988786541------478767103674------
Q ss_pred EEEEEEEEEEEEECCCC-----CHHHCE----EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 99997256788754799-----731211----88974631788999999837896699716528999999835785
Q T0533 84 REALVPITFVLVARPGV-----ELSDIK----RISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 84 ~E~~l~I~~~L~~~~~~-----~l~~I~----~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
..-++.....++.+.+. .++++. .....+....+-..+++.+.|..+++.+.+...+.+++..+.-.
T Consensus 93 s~p~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvD 168 (257)
T 2q88_A 93 SQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRID 168 (257)
T ss_dssp CSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCS
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE
T ss_conf 3322346616899636422345523165546853443168689999998188776057620168888999859757
No 50
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=54.19 E-value=9.8 Score=16.96 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=63.5
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC----CHHHC
Q ss_conf 99606035998999999854995787760330788604887897742799179999997256788754799----73121
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV----ELSDI 105 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~----~l~~I 105 (313)
-..++++. ++.+++..+.+|++|..+-++..+- --+..+..+ .-++.....++++++. +++++
T Consensus 41 ~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~------~r~~~~~~s------~p~~~~~~~~~~~~~~~~i~~~~dl 107 (226)
T 1wdn_A 41 LDYELKPM-DFSGIIPALQTKNVDLALAGITITD------ERKKAIDFS------DGYYKSGLLVMVKANNNDVKSVKDL 107 (226)
T ss_dssp CCEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCH------HHHTTSEEC------SCCEEEEEEEEEETTCCSCSSSTTT
T ss_pred CCEEEEEC-CHHHHHHHHHHCCCCCCCCCCCHHH------HHHCEEEEC------CCEEEEEEEEEEECCCCCCCCHHHH
T ss_conf 96699415-7899876553022111235653010------221458724------5469973699998888998997996
Q ss_pred --EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf --18897463178899999983789669971652899999983578
Q T0533 106 --KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDA 149 (313)
Q Consensus 106 --~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~ 149 (313)
++|.... .. ....|++++.+..+.+...+...+...+..+..
T Consensus 108 ~g~~i~v~~-g~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr~ 151 (226)
T 1wdn_A 108 DGKVVAVKS-GT-GSVDYAKANIKTKDLRQFPNIDNAYMELGTNRA 151 (226)
T ss_dssp TTCEEEEET-TS-HHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSC
T ss_pred CCCEEEEEE-CC-CCCCCCCCCCCCCCCEEECCHHHHHHHHCCEEE
T ss_conf 899999995-53-353100123344551365788898652035167
No 51
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=52.84 E-value=10 Score=16.82 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 8628999999963899960603599899999985499578776033
Q T0533 15 QGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIE 60 (313)
Q Consensus 15 ~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiE 60 (313)
.||||..|-..+.. -+++...+..+|+ .+|+-=++
T Consensus 18 ~gs~s~AA~~L~it--------qsavS~~i~~LE~---~lg~~Lf~ 52 (306)
T 3fzv_A 18 CGSVAEASRKLYIA--------QPSISTAVKGLEE---SFGVQLFI 52 (306)
T ss_dssp SSSHHHHHHHHTCC--------C-CHHHHHHHHHH---HC-CCCC-
T ss_pred CCCHHHHHHHHCCC--------HHHHHHHHHHHHH---HHCCEEEE
T ss_conf 09999999998978--------8899999999999---84997999
No 52
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=50.75 E-value=11 Score=16.62 Aligned_cols=87 Identities=8% Similarity=-0.089 Sum_probs=53.1
Q ss_pred CEEEEECCCC-CHHHHHH-HHHCCCC--CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEE
Q ss_conf 5388808986-2899999-9963899--9606035998999999854995787760330788604887897742799179
Q T0533 7 VTYTFLGPQG-TFTEAAL-MQVPGAA--DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRI 82 (313)
Q Consensus 7 ~~iayLGP~G-SfS~~AA-~~~~~~~--~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~I 82 (313)
.+|+|.--.. +-=..|. +.||... +++++...+-.++++++..|++|+|+.- .. ..+-......+++|
T Consensus 20 ~~i~~~~~p~~~pl~vA~~~G~f~~~Gl~V~~~~~~~~~~~~~a~~~G~~d~~~~~-------~~-~~~~~~~~g~~~~i 91 (365)
T 2de3_A 20 DTLTYSNSPVPNALLTASESGFLDAAGIELDVLSGQQGTVHFTYDQPAYTRFGGEI-------PP-LLSEGLRAPGRTRL 91 (365)
T ss_dssp CEEEEEECSSCCHHHHHHHTTHHHHTTCEEEECBGGGTTHHHHCCSTTEEEEECSH-------HH-HHHHHTTCTTSEEE
T ss_pred EEEEEECCCCCHHHHHHHHCCHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEECCC-------HH-HHHHHHCCCCCEEE
T ss_conf 79997579860899999986918884982899967882799999976997888033-------89-99998459998699
Q ss_pred EEEEEEEEEEEEEECCCCC
Q ss_conf 9999972567887547997
Q T0533 83 IREALVPITFVLVARPGVE 101 (313)
Q Consensus 83 v~E~~l~I~~~L~~~~~~~ 101 (313)
++-....-.+.++++++..
T Consensus 92 i~~~~~~~~~~l~v~~~s~ 110 (365)
T 2de3_A 92 LGITPLLGRQGFFVRDDSP 110 (365)
T ss_dssp EEEEEECCSEEEEEETTCS
T ss_pred EEEEECCCCEEEEEECCCC
T ss_conf 9987427852899868878
No 53
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=50.60 E-value=11 Score=16.60 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCCCC-CCEEEEECCCCCHHH
Q ss_conf 97776-553888089862899
Q T0533 1 SNAMS-AVTYTFLGPQGTFTE 20 (313)
Q Consensus 1 ~~~m~-~~~iayLGP~GSfS~ 20 (313)
||+|+ ++||+..| -|.+..
T Consensus 1 ~~~M~~kikigiiG-~G~~g~ 20 (352)
T 3kux_A 1 SNAMADKIKVGLLG-YGYASK 20 (352)
T ss_dssp CCTTTCCEEEEEEC-CSHHHH
T ss_pred CCCCCCCCEEEEEC-CCHHHH
T ss_conf 97421144499997-969999
No 54
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=50.37 E-value=11 Score=16.58 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 7117999999999738955676412588898456999998658883889999999987518367866423
Q T0533 212 HPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYA 281 (313)
Q Consensus 212 ~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp 281 (313)
+|--+.++.+.+.+.|+-+|++.+---..+.|...+|+-++ |+.++..++.++..|. .|.-=.+|
T Consensus 14 r~~~~~~v~~aL~~~g~~~T~~~~~G~g~q~G~t~~~~gv~----~e~v~~v~~~I~~~~k-~r~e~v~~ 78 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIE----EERVPEVLEIIKKASH-TREEFMTP 78 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEE----GGGHHHHHHHHHHHHC-CEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEEECCEEEEEEEEE----HHHHHHHHHHHHHHHC-CCEEEECC
T ss_conf 88887899999998898499999682426633389996662----5567789999997314-43499617
No 55
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, cytoplasm, histidine, magnesium; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=48.80 E-value=12 Score=16.42 Aligned_cols=244 Identities=16% Similarity=0.135 Sum_probs=129.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC-------------------CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 7765538880898628999999963899-------------------960603599899999985499578776033078
Q T0533 3 AMSAVTYTFLGPQGTFTEAALMQVPGAA-------------------DATRIPCTNVNTALERVRAGEADAAMVPIENSV 63 (313)
Q Consensus 3 ~m~~~~iayLGP~GSfS~~AA~~~~~~~-------------------~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~ 63 (313)
||.++|||.. -+|.-++.+.. +|... +.+++ +-.-.|+-..|+.|.+|.||+-
T Consensus 1 ~~p~lriAiP-~KGrL~e~t~~-ll~~aG~~~~~~~~R~l~~~~~~~~i~~~-~~R~~DIp~~V~~G~~DlGI~G----- 72 (289)
T 2vd3_A 1 AVPKIRIAVP-SKGRISEPAIR-LLENAGVGLKDTVNRKLFSKTQHPQIEVM-FSRAADIPEFVADGAADLGITG----- 72 (289)
T ss_dssp CCCCEEEEEE-SSSTTHHHHHH-HHHHTTCCEESCCTTCSEEEESSTTEEEE-EECTTTHHHHHHHTSSSEEEEE-----
T ss_pred CCCCEEEEEC-CCCCCHHHHHH-HHHHCCCCCCCCCCCCEEEECCCCCEEEE-EECHHHHHHHHHHCCCCEEEEE-----
T ss_conf 9986899978-88857899999-99987998877999543701489987999-9888999999986047535550-----
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEEEEE---EEEEEECCCC---CHHH---CEEEEECCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 860488789774279917999999725---6788754799---7312---118897463178899999983789669971
Q T0533 64 EGGVTATLDAIATGQELRIIREALVPI---TFVLVARPGV---ELSD---IKRISTHGHAWAQCRLWVDEHLPNADYVPG 134 (313)
Q Consensus 64 ~G~V~~tlD~L~~~~~l~Iv~E~~l~I---~~~L~~~~~~---~l~~---I~~V~SHPqal~QC~~fL~~~~p~~~~v~~ 134 (313)
+|.|.+. +-.+.--..|.. ++++.+-.+. ++++ -++|.+-..-+. ++|++++.-+++++..
T Consensus 73 -------~D~l~E~-~~~v~~~~~LgfG~crL~vAvP~~~~~~~~~dl~~g~rIATkYp~it--~~~~~~~gi~~~iv~l 142 (289)
T 2vd3_A 73 -------YDLIVER-GSDVEILEDLKYGRASLVLAAPEDSTIRGPEDIPRGAVIATEFPGIT--ENYLREHGIDAEVVEL 142 (289)
T ss_dssp -------HHHHHHH-TCCCEEEEECSCSCEEEEEEEETTSSCCSGGGCCTTCEEEESCHHHH--HHHHHHTTCCCEEEEC
T ss_pred -------HHHHHHC-CCCEEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCEEEECHHHHH--HHHHHHCCCEEEEEEE
T ss_conf -------8777637-26748985056066689999437544379868234748974126688--9999757602799980
Q ss_pred CCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCC--------------CCCCC
Q ss_conf 6528999999835785311001347888751971564034677787158999715764678--------------78885
Q T0533 135 SSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPE--------------RTGAD 200 (313)
Q Consensus 135 ~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~--------------~~~~~ 200 (313)
+-..++|-.. +-....+=+.++-..-+..||+++.. | -+..++++ ..+...... -....
T Consensus 143 ~GavE~aP~~--G~AD~IvDivsTG~TLr~NgL~~i~~-i---l~s~a~Li-~n~~~~~~k~~~i~~l~~ri~gvl~a~~ 215 (289)
T 2vd3_A 143 TGSTEIAPFI--GVADLITDLSSTGTTLRMNHLRVIDT-I---LESSVKLI-ANRESYATKSGIIEELRTGIRGVIDAEG 215 (289)
T ss_dssp SSCGGGTTTT--TSCSEEEEEESSTHHHHHTTEEEEEE-E---EEECEEEE-ECHHHHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCC--CCCCEEEEEECCHHHHHHCCCCCCCH-H---HHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4744368788--97668898845708899779974411-5---76536887-2705544311679999999999986523
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 278999853787117999999999738955676412588898--456999998658883889999999987518367866
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL--GHYFFSIDADGHATDSRVADALAGLHRISPATRFLG 278 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~--~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLG 278 (313)
+..+.+..+.+. |-++...+ --++| |+-... .+-.+=|.. -.+...+.+.+++|+..+. +-.-
T Consensus 216 ~~~i~~n~p~~~---l~~v~~~l-------Pg~~~-PTvs~~~~~~~~~aV~~--vv~~~~~~~~i~~Lk~~GA--~~Il 280 (289)
T 2vd3_A 216 KRLVMLNIDRKN---LDRVRALM-------PGMTG-PTVSEVLSDNGVVAVHA--VVDEKEVFNLINRLKAVGA--RDIL 280 (289)
T ss_dssp EEEEEEEEEGGG---HHHHHHHC-------CCSSS-CEEEECCSSSCEEEEEE--EEETTTHHHHHHHHHTTTC--EEEE
T ss_pred EEEEEEECCHHH---HHHHHHHC-------CCCCC-CCCCCCCCCCCEEEEEE--EECHHHHHHHHHHHHHCCC--CEEE
T ss_conf 899998376766---99999857-------78889-95164358899799999--9759999999999998499--8589
Q ss_pred EECCCCCC
Q ss_conf 42346787
Q T0533 279 SYARADKQ 286 (313)
Q Consensus 279 sYp~~~~~ 286 (313)
.+|-....
T Consensus 281 v~~Iek~~ 288 (289)
T 2vd3_A 281 VVPIERII 288 (289)
T ss_dssp EEECSCCC
T ss_pred EECCEECC
T ss_conf 96450027
No 56
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Probab=48.22 E-value=12 Score=16.37 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 99999999875183678664234
Q T0533 260 VADALAGLHRISPATRFLGSYAR 282 (313)
Q Consensus 260 v~~al~eL~~~~~~vkvLGsYp~ 282 (313)
-++.++.|+++...+-||-.|.+
T Consensus 160 e~~l~~~l~~~~~Dlivlagym~ 182 (292)
T 3lou_A 160 EAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999999754981999801267
No 57
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=46.27 E-value=13 Score=16.18 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCEEEEECCCCCHHHHHHHHH-------CCCCCCEE--ECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH-
Q ss_conf 553888089862899999996-------38999606--03599899999985499578776033078860488789774-
Q T0533 6 AVTYTFLGPQGTFTEAALMQV-------PGAADATR--IPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIA- 75 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~-------~~~~~~~~--v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~- 75 (313)
+++|-.--++|.=++..|+.+ .|. .+.. +|=..=.-....+.+...|-..+=+-|+. ..+. ..|.
T Consensus 18 ~I~iiVp~~~GGg~D~~aR~~a~~l~k~~g~-~v~v~N~pGagG~~a~~~~~~~~~Dg~tl~~~~~~-~~~~---~~~~~ 92 (312)
T 2f5x_A 18 PVNMVVPFAAGGPTDNVARSLAESMRPTLGE-TVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAG-FSTA---PSLYK 92 (312)
T ss_dssp CEEEEESSCTTSHHHHHHHHHHHHHHHHHSS-CEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETH-HHHG---GGTCS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECC-CCCC---CHHCC
T ss_conf 9899980189868999999999999998689-87999689823599999999569999815775144-3335---10014
Q ss_pred -----CCCCCEEEEEEEEEEEEEEEECCCCC---HHHC---------EEEEECCC----HHHHHHHHHHHHCCCCEEEEC
Q ss_conf -----27991799999972567887547997---3121---------18897463----178899999983789669971
Q T0533 76 -----TGQELRIIREALVPITFVLVARPGVE---LSDI---------KRISTHGH----AWAQCRLWVDEHLPNADYVPG 134 (313)
Q Consensus 76 -----~~~~l~Iv~E~~l~I~~~L~~~~~~~---l~~I---------~~V~SHPq----al~QC~~fL~~~~p~~~~v~~ 134 (313)
...++..++-+. ...+.++++++.. ++++ +..+++.- ..-.-..+.+.....++.+++
T Consensus 93 ~~~~~~~~df~~v~~~~-~~~~~~~v~~~s~~~t~~~li~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~v~y 171 (312)
T 2f5x_A 93 NPGYEPYTSFEPIGLVV-DVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPY 171 (312)
T ss_dssp CCSSCTTTSEEEEEEEE-EEEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEEC
T ss_pred CCCCCHHHHHHHHHCEE-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 68888488764420100-26501202788721337899998752776514650689948889999999953996440466
Q ss_pred CCHHHHHHHHHHCCCCC
Q ss_conf 65289999998357853
Q T0533 135 SSTAASAMGLLEDDAPY 151 (313)
Q Consensus 135 ~STa~Aa~~v~~~~~~~ 151 (313)
.+++++...+..+....
T Consensus 172 ~G~~~~~~allgG~vd~ 188 (312)
T 2f5x_A 172 KGTAPAMNDLLGKQVDL 188 (312)
T ss_dssp SSHHHHHHHHHTTSSCE
T ss_pred CCCHHHHHHHHCCCCCE
T ss_conf 88188999996687540
No 58
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=45.64 E-value=7.8 Score=17.59 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=26.3
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 97776553888089862899999996389996060
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQVPGAADATRI 35 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v 35 (313)
||+|+++=|++=||.||=--..|..+...-+..++
T Consensus 1 ~~~m~~~iI~I~g~~GsGKsTva~~La~~lg~~~i 35 (201)
T 3fdi_A 1 SNAMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp -----CCEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 99777458996489988879999999999399388
No 59
>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2cey_A 2cex_A
Probab=45.48 E-value=13 Score=16.10 Aligned_cols=220 Identities=10% Similarity=0.085 Sum_probs=113.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCC--------CCCCEEECCC---CHHHHHHHHHCCCCCEEEEEEEECC---------
Q ss_conf 7655388808986289999999638--------9996060359---9899999985499578776033078---------
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPG--------AADATRIPCT---NVNTALERVRAGEADAAMVPIENSV--------- 63 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~--------~~~~~~v~~~---s~~~vf~aV~~g~~d~gVvPiENS~--------- 63 (313)
-..+|++..-|+|++.++++..|.. .-.+++.|-. .-.+++++|.+|.+|.+++..-...
T Consensus 2 e~~lk~~~~~~~~~~~~~~~e~fa~~v~e~T~G~v~i~v~~~g~L~~~~e~~~~v~~G~iD~~~~~~~~~~~~~p~~~~~ 81 (310)
T 3b50_A 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVF 81 (310)
T ss_dssp CEEEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGG
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHHH
T ss_conf 57999965679998577999999999998769919999967988688799999998798679988667663346216676
Q ss_pred -----CCC-------------HHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCHHHCE--EEEECCCHHHHHHHHHH
Q ss_conf -----860-------------4887897742799179999997256788754799731211--88974631788999999
Q T0533 64 -----EGG-------------VTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIK--RISTHGHAWAQCRLWVD 123 (313)
Q Consensus 64 -----~G~-------------V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~~l~~I~--~V~SHPqal~QC~~fL~ 123 (313)
-++ ..+.++-+.+..++++.+-...+..+....+|=.+++|.+ +|.+.+-+. -..+++
T Consensus 82 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~L~~~~~g~~~~~~~~pi~s~~DlkGlkiR~~~~~~--~~~~~~ 159 (310)
T 3b50_A 82 ALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAAT--NLAYAK 159 (310)
T ss_dssp GSTTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCHH--HHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCCHHHHCCCEEEECCCHH--HHHHHH
T ss_conf 287568999999999984867899999988758979998406776550479999996897699899659689--999999
Q ss_pred HHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 83789669971652899999983578531100134788875197156403467778715899971576467878885278
Q T0533 124 EHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTT 203 (313)
Q Consensus 124 ~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~~~~~kts 203 (313)
.- ++..++...+ +-..-+ +.+.-+.+ . .+......+++.-+.+.+.+.....+-+.++-.+.....-+..++..
T Consensus 160 ~l--Ga~pv~i~~~-evy~aL-q~G~vDg~-~-~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~~~w~~L~~~~q~~ 233 (310)
T 3b50_A 160 YV--GASPTPMAFS-EVYLAL-QTNAVDGQ-E-NPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDLQKV 233 (310)
T ss_dssp HT--TCEEEECCGG-GHHHHH-HTTSSSEE-E-EEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEHHHHTTSCHHHHHH
T ss_pred HC--CCEEEECCHH-HHHHHH-HCCCCCEE-E-CCHHHHHHHHCEEECCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHH
T ss_conf 86--9864665788-899999-76975438-6-27888865202132332213775245330477789975199999999
Q ss_pred EEEEEC-------CCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 999853-------7871179999999997389556
Q T0533 204 VVVPLP-------EDHPGALMEILDQFASRGVNLS 231 (313)
Q Consensus 204 i~~~~~-------~d~pGaL~~vL~~F~~~gINLt 231 (313)
|.-... ..-...-.+.+..+.++|+.++
T Consensus 234 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~ 268 (310)
T 3b50_A 234 VKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKIT 268 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 99999999999999999988999999997879988
No 60
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} SCOP: d.58.18.13
Probab=44.77 E-value=14 Score=16.03 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHCCCCEEEEECC--CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 99738955676412--588898456999998658883889999999987518367866
Q T0533 223 FASRGVNLSRIESR--PTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLG 278 (313)
Q Consensus 223 F~~~gINLtkIeSR--P~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLG 278 (313)
.+..||...-|.-. .+.+.+.- .+++++.| ++..+++|++.|++..-.+.+||
T Consensus 44 ~~~~~i~vnIl~g~I~~i~~~~~G-~l~l~l~G--~~~~~~~ai~~L~~~~v~vEvl~ 98 (100)
T 2qsw_A 44 VQEYQVEVSIIQGNIQQTKQGAVG-SLYIQLLG--EEQNILAAIEGLRKLRVETEVIG 98 (100)
T ss_dssp HHHHTCEEEEEEEEEEEETTEEEE-EEEEEEES--CHHHHHHHHHHHHHTTCEEEESS
T ss_pred HHHHCCCEEEEEEEEEECCCCCEE-EEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 998599389999861772894179-99999968--99999999999998698799906
No 61
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=43.45 E-value=14 Score=15.90 Aligned_cols=231 Identities=17% Similarity=0.135 Sum_probs=126.5
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH--CC---------------CCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 97776553888089862899999996--38---------------99960603599899999985499578776033078
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQV--PG---------------AADATRIPCTNVNTALERVRAGEADAAMVPIENSV 63 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~--~~---------------~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~ 63 (313)
|..|- +|||.. -+|.-.+.+..-+ .| ..+.+.+ +-.-.|+-..|+.|.+|+||+-
T Consensus 17 s~~mm-LriAiP-~KGrL~e~t~~lL~~aGl~~~~~~r~l~~~~~~~~i~v~-~~R~~DIp~yV~~G~~DlGItG----- 88 (304)
T 1nh8_A 17 SSGMM-LRVAVP-NKGALSEPATEILAEAGYRRRTDSKDLTVIDPVNNVEFF-FLRPKDIAIYVGSGELDFGITG----- 88 (304)
T ss_dssp ----C-EEEEEE-SSSTTHHHHHHHHHHTTCCCCCSTTCSEEEETTTTEEEE-EECGGGHHHHHHHSSCSEEEEE-----
T ss_pred CCCCE-EEEEEC-CCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEE-EECHHHHHHHHHCCCCCEEECH-----
T ss_conf 56875-999937-888478999999998799755788407842599986999-9887999999976998640131-----
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEEEEEEEE---EEECCCCC--HHH--CEEEEECCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 860488789774279917999999725678---87547997--312--11889746317889999998378966997165
Q T0533 64 EGGVTATLDAIATGQELRIIREALVPITFV---LVARPGVE--LSD--IKRISTHGHAWAQCRLWVDEHLPNADYVPGSS 136 (313)
Q Consensus 64 ~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~---L~~~~~~~--l~~--I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~S 136 (313)
+|.|.+. +..+..-..|....| +.+-.+.+ ..+ -++|.+-..-+. ++|++++.-+++++....
T Consensus 89 -------~D~l~E~-~~~v~~~~dLgfG~crL~vAvP~~~~~~~~dl~~~rIATkYp~lt--k~yf~~~gi~~~iv~~~G 158 (304)
T 1nh8_A 89 -------RDLVCDS-GAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLV--RKDLATKGIEATVIRLDG 158 (304)
T ss_dssp -------HHHHHHH-TCCEEEEEECSCCCEEEEEEEETTSCCCGGGGTTCEEEESCHHHH--HHHHHHHTCCCEEEECSS
T ss_pred -------HHHHHCC-CCCCCCEECCCCCCEEEEEEEECCCCCCHHHHCCCEEEECCCHHH--HHHHHHCCCEEEEEECCC
T ss_conf -------7777527-744350141486750389997368887836626989998171477--777987698389997589
Q ss_pred HHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCC-CCC---------------CCCC
Q ss_conf 289999998357853110013478887519715640346777871589997157646-787---------------8885
Q T0533 137 TAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGAL-PER---------------TGAD 200 (313)
Q Consensus 137 Ta~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~-~~~---------------~~~~ 200 (313)
..++|-.+ +-....+=+.++=..-+..||+++..=+. ..+++++ .+.... +.. ....
T Consensus 159 avE~aP~~--GlAD~IvDivsTG~TLraNgLk~i~~il~----ss~~lii-~~~~~~~~~k~~~i~~l~~ri~gvl~A~~ 231 (304)
T 1nh8_A 159 AVEISVQL--GVADAIADVVGSGRTLSQHDLVAFGEPLC----DSEAVLI-ERAGTDGQDQTEARDQLVARVQGVVFGQQ 231 (304)
T ss_dssp CCTHHHHT--TSCSEEEEEESSSHHHHHTTEEEEEEEEE----EECEEEE-EEC--------CHHHHHHHHHHHHHHHTT
T ss_pred CCEEECCC--CCEEEEEEEECCHHHHHHCCCEECCCCHH----HHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81662267--81407888737778999879988751587----7299877-27345572179999999999999997531
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCC----CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 27899985378711799999999973895567641258----8898456999998658883889999999987518
Q T0533 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPT----GQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
Q Consensus 201 ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~----~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~ 272 (313)
+..+.+-.|.+. |-++.... -| ++| |+ ....| +=|. .-.....+.+.+++|++.+.
T Consensus 232 ~~~i~~Nvp~~~---l~~v~~~l--Pg-----l~~-PTVs~L~~~~~---vAV~--~vv~e~~~~~~i~~Lk~~GA 291 (304)
T 1nh8_A 232 YLMLDYDCPRSA---LKKATAIT--PG-----LES-PTIAPLADPDW---VAIR--ALVPRRDVNGIMDELAAIGA 291 (304)
T ss_dssp EEEEEEEEEGGG---HHHHHHHC--CC-----SSS-CEEEECSSTTE---EEEE--EEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEEECCHHH---HHHHHHHC--CC-----CCC-CEEEECCCCCE---EEEE--EEECHHHHHHHHHHHHHCCC
T ss_conf 778884177767---99999768--67-----789-83420378996---9999--99758999999999998599
No 62
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=42.92 E-value=15 Score=15.85 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCC---HHHC--
Q ss_conf 96060359989999998549957877603307886048878977427991799999972567887547997---3121--
Q T0533 31 DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVE---LSDI-- 105 (313)
Q Consensus 31 ~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~~---l~~I-- 105 (313)
.+++++. ++...+.++++|++|..+-+ ...|-+.. .. ......++.....++++.+.. ++++
T Consensus 64 ~i~~~~~-~~~~~~~~l~~g~~Di~~~~--------~~~t~~R~---~~-~~fs~p~~~~~~~l~~~k~~~i~~~~dL~g 130 (287)
T 2vha_A 64 QVKLIPI-TSQNRIPLLQNGTFDFECGS--------TTNNVERQ---KQ-AAFSDTIFVVGTRLLTKKGGDIKDFADLKG 130 (287)
T ss_dssp EEEEEEC-CTTTHHHHHHTTSCSEECSS--------CBCCHHHH---TT-CEEEEEEEEEEEEEEEETTSSCCSGGGGTT
T ss_pred EEEEEEC-CHHHHHHHHHCCCCCEEECC--------CCCCHHHH---HH-CCCCCCEEECCCEEEECCCCCCCCHHHCCC
T ss_conf 7999987-99999999976995453033--------66887887---42-255776231363233116887666555088
Q ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 188974--631788999999837896699716528999999835785
Q T0533 106 KRISTH--GHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 106 ~~V~SH--Pqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
++|..- -....+-+.++....++++++.+.++.++.+.+..+...
T Consensus 131 ~~vgv~~gs~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~L~~GrvD 177 (287)
T 2vha_A 131 KAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAV 177 (287)
T ss_dssp CEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCE
T ss_conf 62134268779999999888747896234230278999999869940
No 63
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.82 E-value=7.8 Score=17.57 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHH
Q ss_conf 765538880898628999999963899960603599899999985
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVR 48 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~ 48 (313)
|+++.|...||+||=--.-|..+...-+... -+..+++....
T Consensus 1 mkp~~I~i~G~pGSGKsT~a~~La~~~g~~~---is~gd~lr~~~ 42 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYTH---LSAGELLRDER 42 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHCCEE---EEHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---ECHHHHHHCCC
T ss_conf 9970999989999998999999999869957---60899876000
No 64
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, hydrolase, inner membrane, membrane; 2.10A {Escherichia coli K12} SCOP: d.58.18.13
Probab=42.71 E-value=15 Score=15.83 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 79999999997389556764125--888984569999986588838899999999875183678664
Q T0533 215 ALMEILDQFASRGVNLSRIESRP--TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGS 279 (313)
Q Consensus 215 aL~~vL~~F~~~gINLtkIeSRP--~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGs 279 (313)
.+.++ .++.|++..-|.+.- +++++.- .+++++.| +++.+++|++-|++..-.+.+||=
T Consensus 37 vis~l---~~~~~v~vnIL~g~i~~i~~~~~G-~Liv~l~G--~~~~~~~ai~~L~~~~v~vEvlgy 97 (106)
T 3dhx_A 37 LLSET---ARRFNVNNNIISAQMDYAGGVKFG-IMLTEMHG--TQQDTQAAIAWLQEHHVKVEVLGY 97 (106)
T ss_dssp HHHHH---HHHSCCEEEEEEEEEEEETTEEEE-EEEEEEES--CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHH---HHHHCCCEEEEEEEEEEECCEEEE-EEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999---998799779999863780884289-99999718--989999999999985985999214
No 65
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes}
Probab=41.92 E-value=15 Score=15.75 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=59.7
Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEEEEEEEEEEECCCC-----CHHH
Q ss_conf 9606035998999999854995787760330788604887897742-799179999997256788754799-----7312
Q T0533 31 DATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIAT-GQELRIIREALVPITFVLVARPGV-----ELSD 104 (313)
Q Consensus 31 ~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~-~~~l~Iv~E~~l~I~~~L~~~~~~-----~l~~ 104 (313)
..++++. ++...+..+..+.+|..+-++-.+ +.-+..+. ....... ...++++.+. +..+
T Consensus 45 ~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~------~~r~~~~~~s~p~~~~-------~~~~~v~~~~~~~~~~~~~ 110 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTIS------QERNLRVNFVEPYIVV-------GQSLLVKKGLEKGVKSYKD 110 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCC------HHHHTTSEECSCSEEE-------CEEEEEETTTTTTCCSGGG
T ss_pred CEEEEEC-CHHHHHHHHHCCCCCEEEECCEEE------CHHHHHCCCCCCCCCC-------CCEEEEECCCCCCCCCHHH
T ss_conf 6599622-606666665303555573022110------0034431356885336-------7403676476434677677
Q ss_pred C----EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 1----188974631788999999837896699716528999999835785311001347888
Q T0533 105 I----KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAA 162 (313)
Q Consensus 105 I----~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa 162 (313)
. ..+....-.. -..|++...|+..++...|..++.+.+.++.-. +++ .+...+
T Consensus 111 ~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~L~~g~vD--~~i-~~~~~~ 167 (245)
T 3k4u_A 111 LDKPELTLVTKFGVS--AEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKAD--MFI-FDLPFN 167 (245)
T ss_dssp GCCSSCEEEEETTSH--HHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSE--EEE-EEHHHH
T ss_pred HHCCCCCCCCCCCHH--HHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCE--EEC-CCCHHH
T ss_conf 504454323464112--325666524543200132232778998669832--323-310456
No 66
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=41.49 E-value=15 Score=15.71 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCC
Q ss_conf 97776553888089862899999996389996060359989999998549
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAG 50 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g 50 (313)
|++|+ .||+.+|- |......+..+....+.+..-+..=.+-.+.+...
T Consensus 1 ~~~m~-~kI~ViGa-G~vG~~ia~~L~~~~~~~v~~~dr~~~~~~~~~~~ 48 (118)
T 3ic5_A 1 SNAMR-WNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM 48 (118)
T ss_dssp -CTTC-EEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT
T ss_pred CCCCC-CCEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCC
T ss_conf 99765-49899866-99999999999858998778750668887641022
No 67
>1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=41.07 E-value=4.4 Score=19.19 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=44.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 7899985378711799999999973895567641258889845699999865888388999999998751836786642
Q T0533 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSY 280 (313)
Q Consensus 202 tsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsY 280 (313)
+.+.+.. .|+||+|.++.+.+..+++|+..+.+.+...+ .+.+.+-+++ .......+.|++.+ ++|.+.|
T Consensus 139 ~~~~~~~-~~~~~~l~~i~~~i~~~~~~i~s~~~~~~~~~--~~~v~i~v~~----~~~~~i~~~le~~g--~~v~~i~ 208 (213)
T 1vr9_A 139 IRFSVLL-EDKPGELRKVVDALALSNINILSVITTRSGDG--KREVLIKVDA----VDEGTLIKLFESLG--IKIESIE 208 (213)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHCCCEEEEEEEEECCCC--EEEEEEEECC----CCHHHHHHHHHHCC--CEEEEEE
T ss_conf 2467752-79998899999999985991889998845898--6999999867----89999999999879--8899998
No 68
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=40.76 E-value=16 Score=15.64 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCEEEE-ECCCCCHHHHHHHHHCCC--CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH--HCCCCC
Q ss_conf 553888-089862899999996389--996060359989999998549957877603307886048878977--427991
Q T0533 6 AVTYTF-LGPQGTFTEAALMQVPGA--ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAI--ATGQEL 80 (313)
Q Consensus 6 ~~~iay-LGP~GSfS~~AA~~~~~~--~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L--~~~~~l 80 (313)
.+||+. .||.+-.=++++...+.. -+.+++.+.+..+.-.|+.+|++|....- ..+.|+.. .+..+|
T Consensus 2 ~i~vg~~~~p~~~~~~~~~~~~~k~~Gi~vevv~f~D~~~pn~Al~~G~iDan~fQ--------h~~yL~~~nk~~g~~L 73 (245)
T 3ir1_A 2 EIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQ--------HKPYLDDFKKEHNLDI 73 (245)
T ss_dssp EEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEE--------CHHHHHHHHHHHTCCE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCEEECC--------CHHHHHHHHHHCCCCE
T ss_conf 59998268987999999988999964976999984686437699866996656414--------7999999999769976
Q ss_pred EEEEEEEEEEEEEEEECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHHCCCCCCEECCC
Q ss_conf 7999999725678875479973121188974631788999999837896699716528---9999998357853110013
Q T0533 81 RIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTA---ASAMGLLEDDAPYEAAICA 157 (313)
Q Consensus 81 ~Iv~E~~l~I~~~L~~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa---~Aa~~v~~~~~~~~aaa~~ 157 (313)
..++.+++. -+.|.++.-.+++++. .++++....+.+ +|...+.+.+. .-+
T Consensus 74 ~~v~~~~~~-p~glYS~k~ksl~dlp--------------------~Ga~IaIpnD~sN~~RaL~lL~~~Gl----I~l- 127 (245)
T 3ir1_A 74 TEVFQVPTA-PLGLYPGKLKSLEEVK--------------------DGSTVSAPNDPSNFARVLVMLDELGW----IKL- 127 (245)
T ss_dssp EEEEECCBC-CCEEEESSCCCGGGCC--------------------TTCEEEEECSHHHHHHHHHHHHHTTS----SEE-
T ss_pred EEEEEEEEC-CCEECCCCCCCHHHCC--------------------CCCEEEEECCCCHHHHHHHHHHHCCE----EEE-
T ss_conf 998667656-8400167858887825--------------------89989985485358889998875885----896-
Q ss_pred HHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 47888751971564034677787158999715764678788852789998537871179999999997389556764125
Q T0533 158 PLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRP 237 (313)
Q Consensus 158 ~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP 237 (313)
.. ... .+.....+|.+.+.|. .|.-+.... .+ +.-.| ....+. +. ......|++.+.+.-+.
T Consensus 128 k~-~~~--~~~~t~~dI~~npk~l-~~~ev~~aq-l~-~al~d-vD~avi---~~--------~~a~~agl~~~~~l~~e 189 (245)
T 3ir1_A 128 KD-GIN--PLTASKADIAENLKNI-KIVELEAAQ-LP-RSRAD-VDFAVV---NG--------NYAISSGMKLTEALFQE 189 (245)
T ss_dssp CT-TCC--GGGCCGGGEEECTTCC-EEEEECGGG-SG-GGGGT-SSEEEE---CH--------HHHHHTTCCGGGCSEEC
T ss_pred CC-CCC--CCCCCHHHHHCCCCCC-EEEECCHHH-HH-HHCCC-CCEEEE---CC--------CHHHHCCCCCCCCCCCC
T ss_conf 68-887--5546654541556450-689768888-65-53067-148997---47--------45977699942220207
Q ss_pred CCCCCCCEE-EEEEEECCCCCHHHHHHHHHH
Q ss_conf 888984569-999986588838899999999
Q T0533 238 TGQYLGHYF-FSIDADGHATDSRVADALAGL 267 (313)
Q Consensus 238 ~~~~~~~Y~-F~id~eg~~~d~~v~~al~eL 267 (313)
- ..+ |. .++==+.+.+++.++...+-+
T Consensus 190 ~-~~~--y~ni~vvr~~~~d~~~ik~l~ea~ 217 (245)
T 3ir1_A 190 P-SFA--YVNWSAVKTADKDSQWLKDVTEAY 217 (245)
T ss_dssp C-CCT--TCCEEEEEGGGTTCHHHHHHHHHT
T ss_pred C-CCC--EEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8-886--489999816456989999999997
No 69
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102}
Probab=39.58 E-value=16 Score=15.53 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=62.1
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEEEEEEEEEEECCCCCHHHC--E
Q ss_conf 996060359989999998549957877603307886048878977427-9917999999725678875479973121--1
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATG-QELRIIREALVPITFVLVARPGVELSDI--K 106 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~-~~l~Iv~E~~l~I~~~L~~~~~~~l~~I--~ 106 (313)
-..++++..++..+++++.+|++|..+-++.. ++.-...+.. ......+...+.....--...-.++.++ +
T Consensus 40 ~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~------~~er~~~~~~s~p~~~~~~~~v~~~~~~~~~~i~~~~dl~~~ 113 (228)
T 2pyy_A 40 IESKLIEYSSVPELISAIKDNKVNLGIAAISI------TAEREQNFDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGK 113 (228)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCSEECSSCBC------CHHHHHHSEECSCSEEEEEEEEEEC-----CCCCSGGGCTTC
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCC------CHHHHHHCCCCCCEECCCCEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 97499967999999999985997602221445------888873235576701367247874056776553554664895
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 88974631788999999837896699716528999999835785
Q T0533 107 RISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 107 ~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
+|....-. ....+++++ .++++.+.|...+.+.+..+...
T Consensus 114 ~v~~~~g~--~~~~~l~~~--~~~~~~~~~~~~~~~~l~~gr~D 153 (228)
T 2pyy_A 114 VVATTAGS--TAATYLREH--HISVLEVPKIEEAYKALQTKKAD 153 (228)
T ss_dssp EEEEETTS--HHHHHHHHT--TCEEEEESSHHHHHHHHHTTSSS
T ss_pred EEEEECCC--HHHHHHHHH--HCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 58997684--477788764--01233442178887788759667
No 70
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=39.29 E-value=17 Score=15.50 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCC-----CCCC
Q ss_conf 78966997165289999998357853110013478887519715640346777871589997157646787-----8885
Q T0533 126 LPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER-----TGAD 200 (313)
Q Consensus 126 ~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~-----~~~~ 200 (313)
.|+++.++.-|-.+|.+...-+..- .-+.+..-+..|+.++.-+|.-|...--|+. .++.....+ +..+
T Consensus 243 v~~a~~i~~lsy~ea~ela~~Ga~v---lhp~~~~~~~~~~ipi~v~nt~~p~~~gT~I---~~~~~~~~~~vk~i~~~~ 316 (473)
T 3c1m_A 243 VPTARRIPKLSYIEAMELAYFGAKV---LHPRTIEPAMEKGIPILVKNTFEPESEGTLI---TNDMEMSDSIVKAISTIK 316 (473)
T ss_dssp CTTCCBCSEEEHHHHHHHHHTTCTT---SCGGGHHHHHHHTCCEEEEETTSTTSCCEEE---ESCCCCCTTSCCEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCC---CCHHHHHHHHHCCCCEEEEECCCCCCCCEEE---ECCCCCCCCCEEEEEECC
T ss_conf 7776545413699999998558755---5878899999649818997168999996389---568536788258998153
Q ss_pred E-EEEEEEE--CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2-7899985--37871179999999997389556764125888984569999986588838899999999875
Q T0533 201 K-TTVVVPL--PEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
Q Consensus 201 k-tsi~~~~--~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~ 270 (313)
. +.+-+.. ..+.+|.+.+++..|++++||...|..-+. +..+.+.+.- ...+++++.|++.
T Consensus 317 ~v~~i~i~~~~~~~~~g~~a~If~~l~~~~inV~~i~~~~s-----~~sI~~~v~~----~d~~~~~~~L~~~ 380 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS-----ETNISLVVSE----EDVDKALKALKRE 380 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT-----TCCEEEEEEG----GGHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC-----CCCCCCCCCH----HHHHHHHHHHHHH
T ss_conf 26677732566666544899998888734855999983488-----7741102678----8899999999999
No 71
>1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=39.23 E-value=17 Score=15.49 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=59.3
Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCC-----CHHH
Q ss_conf 99606035998999999854995787760330788604887897742799179999997256788754799-----7312
Q T0533 30 ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGV-----ELSD 104 (313)
Q Consensus 30 ~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~-----~l~~ 104 (313)
-+.++++..++.+.+.++++|++|..+-++ ..|.+.... ..+ ..-.-++.....++.++.. ++++
T Consensus 44 ~~~e~v~~~~~~~~~~~l~~g~~Dl~~~~~--------~~t~~r~~~-~~~-~fs~Py~~~~~~~~~~~~~~~~~~~~~d 113 (233)
T 1ii5_A 44 WNSEYVRQNSISAGITAVAEGELDILIGPI--------SVTPERAAI-EGI-TFTQPYFSSGIGLLIPGTATPLFRSVGD 113 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHTTSCSEEEEEE--------ECCHHHHTS-TTE-EECCCCEEEEEEEEEEGGGTTTCSSGGG
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCEEECCC--------CCCHHHHHH-CCC-CCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 977999469989999999769978884156--------135778741-174-3037743356317999620455553102
Q ss_pred C---EEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 1---188974631788999999837896699716528999999835785
Q T0533 105 I---KRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 105 I---~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
+ +.-..+-.. +..|+. .|+.+.+.+.|...+.+.+..+.-.
T Consensus 114 l~~~~igv~~g~~---~~~~~~--~~~~~~~~~~~~~~~~~~L~~g~vD 157 (233)
T 1ii5_A 114 LKNKEVAVVRDTT---AVDWAN--FYQADVRETNNLTAAITLLQKKQVE 157 (233)
T ss_dssp GTTCEEEEETTSH---HHHHHH--HTTCEEEEESSHHHHHHHHHTTSCS
T ss_pred CCCCEEEEECCCH---HHHHHH--CCCCCEEEECCHHHHHHHHHCCCCC
T ss_conf 5898699955846---999862--0286225632368999997477886
No 72
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=38.96 E-value=17 Score=15.46 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=88.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCC------CCCC--EEECCC---CHHHHHHHHHCCCCCEEEEEEEECCC----------
Q ss_conf 55388808986289999999638------9996--060359---98999999854995787760330788----------
Q T0533 6 AVTYTFLGPQGTFTEAALMQVPG------AADA--TRIPCT---NVNTALERVRAGEADAAMVPIENSVE---------- 64 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~~~------~~~~--~~v~~~---s~~~vf~aV~~g~~d~gVvPiENS~~---------- 64 (313)
.+|++-..|+|+...+++..|.. +... +..|.. +-.+++++|.+|.+|.++++.-+...
T Consensus 10 tlr~~~~~p~~~~~~~~~~~fa~~V~e~t~G~i~i~v~~~g~Lg~~~e~~~~v~~G~vd~~~~~~~~~~~~~p~~~~~~l 89 (327)
T 2hpg_A 10 TLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNL 89 (327)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCC
T ss_conf 99997878998989999999999999876990899996698768879999999779954895243022235676240124
Q ss_pred -CCH------------------------HHHHHHHHCCCCCEEEEEEEEEEEEEEEEC-CCCCHHHCE--EEEECCCHHH
Q ss_conf -604------------------------887897742799179999997256788754-799731211--8897463178
Q T0533 65 -GGV------------------------TATLDAIATGQELRIIREALVPITFVLVAR-PGVELSDIK--RISTHGHAWA 116 (313)
Q Consensus 65 -G~V------------------------~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~-~~~~l~~I~--~V~SHPqal~ 116 (313)
+.+ .+.++-+.+..++++.+-....-...+..+ |=.+++|.+ ++.+-+-+.
T Consensus 90 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~~kpi~s~~DlkG~kiR~~g~~~- 168 (327)
T 2hpg_A 90 AYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVTNKPIRKPEDLNGLRIRTPGAPA- 168 (327)
T ss_dssp TTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEESSCCSSGGGGTTCEEECCSSHH-
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCHHHHCCCCEECCCCHH-
T ss_conf 2103655558889999999998649899999999988729842335404760567648888998997698265469737-
Q ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCC-CCEEEEEEEECC
Q ss_conf 89999998378966997165289999998357853110013478887519715640346777-871589997157
Q T0533 117 QCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNP-DAVTRFILVSRP 190 (313)
Q Consensus 117 QC~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~-~N~TRF~ii~~~ 190 (313)
-.++++.. ++..++...+ +-...+..+- -++ +..+......+++.-..+++.+.. ...+-++++.++
T Consensus 169 -~~~~~~~~--Ga~pv~~~~~-Evy~aLq~G~-iDg--~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~~ 236 (327)
T 2hpg_A 169 -WQESIRSL--GAIPVAVNFG-EIYTAVQTRA-VDG--AELTYANVYNGGLYEVLKYMSETGHFLLINFEIVSAD 236 (327)
T ss_dssp -HHHHHHHH--TSEEECCCGG-GHHHHHHTTS-CSE--EEECHHHHHHTTGGGTCCEEEEEEEEEEEEEEEEEHH
T ss_pred -HHHHHHHC--CCEEEECCCC-CHHHHHHCCC-EEE--EEECHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHH
T ss_conf -89999972--9701214763-1677987686-348--9615366653013110346852897542059884599
No 73
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=38.67 E-value=17 Score=15.44 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHH-------CCCCCCEEE--CCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHH-HHH
Q ss_conf 6553888089862899999996-------389996060--359989999998549957877603307886048878-977
Q T0533 5 SAVTYTFLGPQGTFTEAALMQV-------PGAADATRI--PCTNVNTALERVRAGEADAAMVPIENSVEGGVTATL-DAI 74 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~~-------~~~~~~~~v--~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tl-D~L 74 (313)
+++++-.--++|.-++.-|+.+ +|. .+..+ |=.+=.-....+.+...|-..+=+-++. ..+...+ .-+
T Consensus 8 k~I~~iVp~~aGGg~D~~aR~~a~~l~k~lg~-~v~V~N~pG~gG~~a~~~~~~~~~dg~t~~~~~~~-~~~~~~~~~~~ 85 (301)
T 2qpq_A 8 KPLDIIVTFPPGGGTDMLARLIGNYLTESLGQ-TAVVENRPGASGNVGARLVADRAPDGYSLLMVNSS-FAVNPGVFRNL 85 (301)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHHHHHHHGGGS-CEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETH-HHHHHHHCTTC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCC-CEEECCCCCCC
T ss_conf 98899980299868999999999999998799-86999679951399999998568899802420322-06503123888
Q ss_pred -H-CCCCCEEEEEEEEEEEEEEEECCCCC---HHHC---------EEEEECCC----HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf -4-27991799999972567887547997---3121---------18897463----17889999998378966997165
Q T0533 75 -A-TGQELRIIREALVPITFVLVARPGVE---LSDI---------KRISTHGH----AWAQCRLWVDEHLPNADYVPGSS 136 (313)
Q Consensus 75 -~-~~~~l~Iv~E~~l~I~~~L~~~~~~~---l~~I---------~~V~SHPq----al~QC~~fL~~~~p~~~~v~~~S 136 (313)
. ...++..++-+... .+.|+++++.+ ++++ +..+++.- ..-....+.+...-....+++.+
T Consensus 86 ~~~~~~d~~~i~~~~~~-~~~lvv~~ds~~~t~~dli~~ak~~p~~~~~g~~g~g~~~~~~~~~~~~~~g~~~~~vpy~G 164 (301)
T 2qpq_A 86 PFDPKKDFAAVINVAYV-PSVFVVPAGSKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKG 164 (301)
T ss_dssp SSCTTTTEEEEEEEEEE-EEEEEEETTCSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSS
T ss_pred CCCHHHHHHEEEEECCC-CCEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88846520205774367-73688658777330688888755303455341488884889999999854115437873167
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 289999998357853
Q T0533 137 TAASAMGLLEDDAPY 151 (313)
Q Consensus 137 Ta~Aa~~v~~~~~~~ 151 (313)
.+.+...+..+.-..
T Consensus 165 ~~~~~~all~G~vd~ 179 (301)
T 2qpq_A 165 CGPALNDVLGSQIGL 179 (301)
T ss_dssp HHHHHHHHHTTSSSC
T ss_pred CCHHHHHHHCCEEEE
T ss_conf 404555652574567
No 74
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 1.71A {Vibrio parahaemolyticus rimd 2210633} SCOP: d.58.18.13
Probab=38.63 E-value=17 Score=15.43 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHCCCCEEEEECCC--CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 99997389556764125--888984569999986588838899999999875183678664
Q T0533 221 DQFASRGVNLSRIESRP--TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGS 279 (313)
Q Consensus 221 ~~F~~~gINLtkIeSRP--~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGs 279 (313)
+..++.|+...-|...- +++++.-+ +++++.| ++.++++|++-|++..-.+.+||=
T Consensus 42 ~l~~~~~i~vnIL~g~i~~i~~~~~G~-l~l~l~G--~~~~~~~ai~~L~~~~v~vEvlgy 99 (101)
T 2qrr_A 42 QISRKYNIDVSILSSDLDYAGGVKFGM-MVAELFG--NEQDDSAAIEYLRENNVKVEVLGY 99 (101)
T ss_dssp HHHHHSCCEEEEEEEEEEEETTEEEEE-EEEEEES--CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEEEEEECCEEEEE-EEEEEEC--CHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999986997499998527848942899-9999978--999999999999986984999512
No 75
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=38.61 E-value=11 Score=16.68 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHH
Q ss_conf 553888089862899999996389996060359989999998
Q T0533 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERV 47 (313)
Q Consensus 6 ~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV 47 (313)
.|||.++||+||=--.-|......-+.. +-+..+++...
T Consensus 4 ~mrI~i~GpPGsGK~T~a~~La~~~g~~---~is~GdllR~~ 42 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA---HLATGDMLRSQ 42 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE---EEEHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCE---EECHHHHHHHH
T ss_conf 3189998999998799999999986994---67599999999
No 76
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=38.35 E-value=17 Score=15.41 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=64.7
Q ss_pred EECCCCC---HHHHHHHHHCCC--CCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 8089862---899999996389--99606035998999999854995787760330788604887897742799179999
Q T0533 11 FLGPQGT---FTEAALMQVPGA--ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIRE 85 (313)
Q Consensus 11 yLGP~GS---fS~~AA~~~~~~--~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E 85 (313)
|.++.|. |...-+...+.. -..++++. ++..++.+++.|++|.++-++.. .+.-...+..+.
T Consensus 36 ~~~~~g~~~G~~~Dl~~~ia~~lg~~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~------t~~r~~~~~~s~------ 102 (268)
T 3hv1_A 36 YEEKDGSYIGFDIDLANAVFKLYGIDVEWQAI-DWDMKETELKNGTIDLIWNGYSV------TDERKQSADFTE------ 102 (268)
T ss_dssp EECTTSCEECHHHHHHHHHHHTTTCEEEEEEC-CGGGHHHHHHHTSCSEECSSCBC------CHHHHTTCEECC------
T ss_pred EECCCCCEEEHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCCCCCCCCC------CHHHHHHCCCCC------
T ss_conf 89999988870999999999997994799616-78889999976997643434656------754543113466------
Q ss_pred EEEEEEEEEEECCCCC---HHHC--EEEEECCCH--HHHH---HHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 9972567887547997---3121--188974631--7889---99999837896699716528999999835785
Q T0533 86 ALVPITFVLVARPGVE---LSDI--KRISTHGHA--WAQC---RLWVDEHLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 86 ~~l~I~~~L~~~~~~~---l~~I--~~V~SHPqa--l~QC---~~fL~~~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
-++.....|+++.+.. ++++ ++|..-.-. ..+. .++++...+..+++.+.|...+.+++..+...
T Consensus 103 py~~~~~~l~~r~~~~i~~~~dL~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~GrvD 177 (268)
T 3hv1_A 103 PYMVNEQVLVTKKSSGIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRID 177 (268)
T ss_dssp CCEEECEEEEEEGGGCCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCS
T ss_pred CCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEE
T ss_conf 611551699997899999979958987999638619999997676676416774499844689999999759747
No 77
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=38.07 E-value=16 Score=15.62 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 97776553888089862899999996
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQV 26 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~ 26 (313)
||.|++++|+.+| -|+..-.-+..+
T Consensus 1 ~n~MK~i~IaIlG-~G~VG~~ll~il 25 (331)
T 3c8m_A 1 SNAMKTINLSIFG-LGNVGLNLLRII 25 (331)
T ss_dssp ---CEEEEEEEEC-CSHHHHHHHHHH
T ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHH
T ss_conf 9988781289989-888999999999
No 78
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=37.82 E-value=18 Score=15.35 Aligned_cols=230 Identities=11% Similarity=0.112 Sum_probs=122.7
Q ss_pred CCEEEEECCC-CCHHHHHHHHHC--C---------------CCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCH
Q ss_conf 5538880898-628999999963--8---------------999606035998999999854995787760330788604
Q T0533 6 AVTYTFLGPQ-GTFTEAALMQVP--G---------------AADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGV 67 (313)
Q Consensus 6 ~~~iayLGP~-GSfS~~AA~~~~--~---------------~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V 67 (313)
.+|||. |. |.-.+.+..-+- | +.+.+++ +-.-.|+-..|+.|.+|.|++-
T Consensus 6 ~L~iAl--PkkGrL~~~~~~ll~~~G~~~~~~~r~l~~~~~~~~i~~~-~~R~~DIp~yV~~G~~DlGItG--------- 73 (299)
T 1h3d_A 6 RLRIAM--QKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDIL-RVRDDDIPGLVMDGVVDLGIIG--------- 73 (299)
T ss_dssp CEEEEE--ESSSTTHHHHHHHHHHTTCCCCCSSSCSEEECSSSSEEEE-EECGGGHHHHHHTTSSSEEEEE---------
T ss_pred CEEEEE--CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEE-EECHHHHHHHHHCCCCCCCCCH---------
T ss_conf 179995--7998158999999998799778888524622389986999-9888999999975997613123---------
Q ss_pred HHHHHHHHCC--------CCCEEEEEEEEEE---EEEEEECCCCCHH---HC--EEEEECCCHHHHHHHHHHHHCCCCEE
Q ss_conf 8878977427--------9917999999725---6788754799731---21--18897463178899999983789669
Q T0533 68 TATLDAIATG--------QELRIIREALVPI---TFVLVARPGVELS---DI--KRISTHGHAWAQCRLWVDEHLPNADY 131 (313)
Q Consensus 68 ~~tlD~L~~~--------~~l~Iv~E~~l~I---~~~L~~~~~~~l~---~I--~~V~SHPqal~QC~~fL~~~~p~~~~ 131 (313)
+|.|.+. ++-.+..-..|.. ++++.+..+..+. +. ++|.+-..-+. ++|++++.-++++
T Consensus 74 ---~D~l~E~~~d~~~~~~~~~v~~l~~LgfG~crl~vAvP~~~~~~~~~~l~~~RIATkYpnlt--~~ff~~~gi~~~i 148 (299)
T 1h3d_A 74 ---ENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLNGKRIATSYPHLL--KRYLDQKGISFKS 148 (299)
T ss_dssp ---HHHHHHHHHHHHHHTCCCCEEEEEECSCCCEEEEEEEETTSCCCCGGGGTTCEEEESCHHHH--HHHHHHHTCCCEE
T ss_pred ---HHHHHHHCCCHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEHHHHHH--HHHHHHCCCCEEE
T ss_conf ---57887512331111466425775315656568999616766402135505858974226799--9999985993787
Q ss_pred EECCCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCC---------------
Q ss_conf 97165289999998357853110013478887519715640346777871589997157646787---------------
Q T0533 132 VPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER--------------- 196 (313)
Q Consensus 132 v~~~STa~Aa~~v~~~~~~~~aaa~~~~~aa~~ygL~il~~~I~d~~~N~TRF~ii~~~~~~~~~--------------- 196 (313)
+..+...++|-.+--. ...+=+.++-..-+..||++++. |-+ -.+++ |..+....+..
T Consensus 149 i~l~GavE~ap~~G~A--D~IvDivsTG~TLk~NgLk~i~~-Il~---Ssa~L-I~n~~~~~~~~~~~i~~l~~ri~gvl 221 (299)
T 1h3d_A 149 CLLNGSVEVAPRAGLA--DAICDLVSTGATLEANGLREVEV-IYR---SKACL-IQRDGEMEESKQQLIDKLLTRIQGVI 221 (299)
T ss_dssp EECSSCTTHHHHTTSC--SEEEEEESSCHHHHHTTEEEEEE-EEE---ECEEE-EEESSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCE--EEEEEECCCHHHHHHCCCCCCCE-EHH---HHHHH-EECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6354866664778902--06263135678999879902578-656---01716-27874336116999999999999898
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CEEEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 88852789998537871179999999997389556764125888984--56999998658883889999999987518
Q T0533 197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLG--HYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
Q Consensus 197 ~~~~ktsi~~~~~~d~pGaL~~vL~~F~~~gINLtkIeSRP~~~~~~--~Y~F~id~eg~~~d~~v~~al~eL~~~~~ 272 (313)
....+..+++-.|.+ .|-++... |--++| |+-..+. +-.+=|.. -.+...+.+.+++|++.+.
T Consensus 222 ~A~~~~~i~~N~p~~---~l~~v~~~-------lPg~~~-PTVs~l~~~~~~~aV~~--vv~~~~~~~~~~~Lk~~GA 286 (299)
T 1h3d_A 222 QARESKYIMMHAPTE---RLDEVIAL-------LPGAER-PTILPLAGDQQRVAMHM--VSSETLFWETMEKLKALGA 286 (299)
T ss_dssp HHHHCEEEECCCCTT---THHHHHHH-------SCCSSC-CCBCCCC-------BEE--EESSCCCHHHHHHHHHTTC
T ss_pred HHHEEEEEEEECCHH---HHHHHHHH-------CCCCCC-CCCCCCCCCCCEEEEEE--EECHHHHHHHHHHHHHCCC
T ss_conf 461099999979777---69999985-------867778-85056568999899999--9758889999999998699
No 79
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=37.55 E-value=18 Score=15.33 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEE--EEEEEEEEECCCCCHHH
Q ss_conf 3899960603599899999985499578776033078860488789774279917999999--72567887547997312
Q T0533 27 PGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREAL--VPITFVLVARPGVELSD 104 (313)
Q Consensus 27 ~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~--l~I~~~L~~~~~~~l~~ 104 (313)
|.+-+.+++.+..-.+.++++.+|++|++++. ..+.+..........++.-.. +-..+....+...+|..
T Consensus 41 ~~gl~ve~~~~~g~~~~~~aL~~G~~D~a~~~--------~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~i~s~~DLkG 112 (231)
T 2ozz_A 41 FDGIPFYYAHMRGADIRVECLLNGVYDMAVVS--------RLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGESGNV 112 (231)
T ss_dssp TTTSCEEEEECSCHHHHHHHHHTTSCSEEEEE--------HHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETTCGGGC
T ss_pred HCCCCEEEEEECCHHHHHHHHHCCCCCEEEEC--------CHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCHHHCCC
T ss_conf 54994899994484888999985985767407--------2589999865997367740440002465557699688399
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 1188974631788999999837---896699716528999999835785
Q T0533 105 IKRISTHGHAWAQCRLWVDEHL---PNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 105 I~~V~SHPqal~QC~~fL~~~~---p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
++|-..+-...| .+|.+.. -+++.++. +.+.....+..+.-.
T Consensus 113 -k~Vgv~~~s~~~--~~L~~~~~~~~~v~~v~~-~~~~~~~al~~G~vD 157 (231)
T 2ozz_A 113 -KRVGLDSRSADQ--KIMTDVFFGDSDVERVDL-SYHESLQRIVKGDVD 157 (231)
T ss_dssp -CEEEECTTCHHH--HHHHHHHHTTSCCEEEEC-CHHHHHHHHHHTSCC
T ss_pred -CEEEECCCCHHH--HHHHHCCCCCCCEEEEEC-CHHHHHHHHHHCCCC
T ss_conf -999967998799--999984998565699973-889999999854842
No 80
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=37.49 E-value=18 Score=15.32 Aligned_cols=72 Identities=8% Similarity=-0.006 Sum_probs=39.1
Q ss_pred CCEEEEEEEEEEEEEEEECCCCCHHHCE------------EEEECCC---HHHHHHHHH-HHHCCCCEEEECCCHHHHHH
Q ss_conf 9179999997256788754799731211------------8897463---178899999-98378966997165289999
Q T0533 79 ELRIIREALVPITFVLVARPGVELSDIK------------RISTHGH---AWAQCRLWV-DEHLPNADYVPGSSTAASAM 142 (313)
Q Consensus 79 ~l~Iv~E~~l~I~~~L~~~~~~~l~~I~------------~V~SHPq---al~QC~~fL-~~~~p~~~~v~~~STa~Aa~ 142 (313)
++..++-+.- --++++++++......+ ..++... ........| +...-.++.|++.+++.+..
T Consensus 105 df~pv~~~~~-~~~~~~v~~~s~~~t~~eli~~~k~~p~~l~~g~~~~g~~~~~~~~~l~~~~G~~~~~Vpy~G~~~~~~ 183 (314)
T 2dvz_A 105 DFQPVTNFAN-TANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVA 183 (314)
T ss_dssp SEEEEEEEEE-ECEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHH
T ss_pred HHHHEEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 5451134302-651013577875376999999986289744663036544105679999998399669941378632268
Q ss_pred HHHHCCCCC
Q ss_conf 998357853
Q T0533 143 GLLEDDAPY 151 (313)
Q Consensus 143 ~v~~~~~~~ 151 (313)
.+..+.-..
T Consensus 184 all~G~vd~ 192 (314)
T 2dvz_A 184 DAVGGQIEL 192 (314)
T ss_dssp HHHHTSSSE
T ss_pred HHHCCEEEE
T ss_conf 885792789
No 81
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=35.21 E-value=19 Score=15.09 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCCHHHHHH--HHHC--CCCCCE--EECCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH---
Q ss_conf 6553888089862899999--9963--899960--603599899999985499578776033078860488789774---
Q T0533 5 SAVTYTFLGPQGTFTEAAL--MQVP--GAADAT--RIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIA--- 75 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA--~~~~--~~~~~~--~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~--- 75 (313)
..++|+--+|-|+|.-.+. .+.. ...+.+ .++-.--.+-+..+..|++|+|++. -...++...
T Consensus 19 ~~l~i~tg~~gg~~~~~~~~la~~l~~~~~~i~~~~~~t~Gs~~N~~~l~~g~~d~a~~~--------~~~~~~a~~G~~ 90 (314)
T 1us5_A 19 EFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQ--------NDIAYYAYQGCC 90 (314)
T ss_dssp EEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEE--------HHHHHHHHHTCS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEC--------HHHHHHHHCCCC
T ss_conf 138999799987069999999999973589838999717887999999856887099950--------488999863776
Q ss_pred -------CCCCCEEEEEEEEEEEEEEEECCCC---CHHHC--EEEEECCCH---HHHHHHHHHHHCCC---CEEEECCCH
Q ss_conf -------2799179999997256788754799---73121--188974631---78899999983789---669971652
Q T0533 76 -------TGQELRIIREALVPITFVLVARPGV---ELSDI--KRISTHGHA---WAQCRLWVDEHLPN---ADYVPGSST 137 (313)
Q Consensus 76 -------~~~~l~Iv~E~~l~I~~~L~~~~~~---~l~~I--~~V~SHPqa---l~QC~~fL~~~~p~---~~~v~~~ST 137 (313)
...++..+.-++-..-| ++++.+. +++|+ |+|..-+.. ..-++..|+...-. ...+...+.
T Consensus 91 ~~~~~~~~~~~lr~v~~l~~~~~~-~~v~~ds~I~s~~DL~gk~v~~g~~gs~~~~~~~~~l~~~g~~~~d~~~~~~~~~ 169 (314)
T 1us5_A 91 IPAFEGKPVKTIRALAALYPEVVH-VVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSA 169 (314)
T ss_dssp STTTTTCCCTTEEEEEEEEEEEEE-EEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCH
T ss_pred CCCCCCCCCCCCEEEEECCHHHHH-HCCCCCCCCCCHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCH
T ss_conf 520125655250277881615554-2025667754065527856631689860888999999982777555530121465
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 89999998357853
Q T0533 138 AASAMGLLEDDAPY 151 (313)
Q Consensus 138 a~Aa~~v~~~~~~~ 151 (313)
..++..+.++.-..
T Consensus 170 ~~~~~al~~g~iDa 183 (314)
T 1us5_A 170 SQGIQLMQDKRADA 183 (314)
T ss_dssp HHHHHHHHTTSCSE
T ss_pred HHHHHHHCCCCCCE
T ss_conf 67889850897545
No 82
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8}
Probab=35.19 E-value=19 Score=15.09 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCC-----------CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
Q ss_conf 7871179999999997-3895567641258889-----------845699999865888388999999998751836786
Q T0533 210 EDHPGALMEILDQFAS-RGVNLSRIESRPTGQY-----------LGHYFFSIDADGHATDSRVADALAGLHRISPATRFL 277 (313)
Q Consensus 210 ~d~pGaL~~vL~~F~~-~gINLtkIeSRP~~~~-----------~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvL 277 (313)
...|..|.+.|+.++. .++-|..|.+|-++-. .|.-.|+.+-.+...+..+-++|..+...-.|+|+=
T Consensus 399 ~~~~~~l~~~l~~~~~~~~l~L~mIsnrG~kVwP~~~~~t~~~DhwrCRF~~~~~~~~~~~~i~~Ll~~~~~~~~~ik~E 478 (496)
T 2d1c_A 399 NLLPEALGKALEDLAAGTPFRLKMISNRGTQVYPPTGGLTDLVDHYRCRFLYTGEGEAKDPEILDLVSRVASRFRWMHLE 478 (496)
T ss_dssp CSCHHHHHHHHHHHHTTSSEEEEEEEETTEEEESCCSCCCCCCSEEEEEEEECSSSCCCHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99989999999850469980799993298678999998765556658888757988677899999999997599789970
Q ss_pred EEEC
Q ss_conf 6423
Q T0533 278 GSYA 281 (313)
Q Consensus 278 GsYp 281 (313)
.=|-
T Consensus 479 ~Ly~ 482 (496)
T 2d1c_A 479 KLQE 482 (496)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 1153
No 83
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=34.89 E-value=19 Score=15.06 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=51.7
Q ss_pred CHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCHHHC----------EEE
Q ss_conf 9899999985499578776033078860488789774279917999999725678875479973121----------188
Q T0533 39 NVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDI----------KRI 108 (313)
Q Consensus 39 s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E~~l~I~~~L~~~~~~~l~~I----------~~V 108 (313)
++++++.+++.|++|..+=++ ..|-+.- . ....-.-++.....++++.+..+... ..+
T Consensus 105 ~w~~~~~~l~~g~~Di~~~~~--------~~t~eR~---~-~~~Fs~Py~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (292)
T 1pb7_A 105 EWNGMMGELLSGQADMIVAPL--------TINNERA---Q-YIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFI 172 (292)
T ss_dssp EECHHHHHHHHTSCSEECSSC--------BCCHHHH---T-TEEECSCSEEEEEEEEEETTCCCCSTTCHHHHSCBTTBC
T ss_pred CHHHHHHHHHCCCEEEEEECC--------CCCHHHH---H-HCCCCCEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEE
T ss_conf 888999998679767998668--------7998999---4-266651012477689998688656453033068633269
Q ss_pred EECCCHHHHHHHHHHH------HCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 9746317889999998------37896699716528999999835785
Q T0533 109 STHGHAWAQCRLWVDE------HLPNADYVPGSSTAASAMGLLEDDAP 150 (313)
Q Consensus 109 ~SHPqal~QC~~fL~~------~~p~~~~v~~~STa~Aa~~v~~~~~~ 150 (313)
.+-.+. .....++.+ .+++++.+...|..++.+.+..+.-.
T Consensus 173 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d 219 (292)
T 1pb7_A 173 YATVKQ-SSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLH 219 (292)
T ss_dssp EECBTT-SHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCS
T ss_pred EEEECC-HHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEE
T ss_conf 978664-79999998646665306774699828899999998779735
No 84
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=33.81 E-value=13 Score=16.08 Aligned_cols=37 Identities=5% Similarity=0.053 Sum_probs=20.2
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHH
Q ss_conf 5388808986289999999638999606035998999999
Q T0533 7 VTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALER 46 (313)
Q Consensus 7 ~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~a 46 (313)
|+|.++||+||=--.-|......-+.. +-|..+++.+
T Consensus 1 m~I~i~GpPGsGK~T~a~~la~~~g~~---~is~GdllR~ 37 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIP---HISTGDMFRA 37 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCC---EEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCE---EECHHHHHHH
T ss_conf 979998999998799999999987993---7858999999
No 85
>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=33.65 E-value=15 Score=15.82 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCH----HHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCC
Q ss_conf 5538880898628----999999963899960603599899999985499
Q T0533 6 AVTYTFLGPQGTF----TEAALMQVPGAADATRIPCTNVNTALERVRAGE 51 (313)
Q Consensus 6 ~~~iayLGP~GSf----S~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~ 51 (313)
-|+|..+||+||= +..-|.+| +... -+..+.+.+.....
T Consensus 8 ~M~I~i~GpPGSGK~T~a~~La~~~----~~~~---is~GdllR~~~~~~ 50 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF----GIPQ---ISTGDMLRAAVKAG 50 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH----TCCE---ECHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCEE---ECHHHHHHHHHHHC
T ss_conf 5079998999998799999999987----9957---74999999998828
No 86
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=33.01 E-value=15 Score=15.82 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCHH---HHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 7655388808986289---999999638999606035998999999854995787760
Q T0533 4 MSAVTYTFLGPQGTFT---EAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVP 58 (313)
Q Consensus 4 m~~~~iayLGP~GSfS---~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvP 58 (313)
|+ +|||..|. |.+. |..+++.. .+.+++-|+.-.+....... .||+.+
T Consensus 1 M~-lrigiiG~-G~~a~~~~~~~~~~~--~~~el~~~d~~~~~~~~~a~---~~~~~~ 51 (323)
T 1xea_A 1 MS-LKIAMIGL-GDIAQKAYLPVLAQW--PDIELVLCTRNPKVLGTLAT---RYRVSA 51 (323)
T ss_dssp -C-EEEEEECC-CHHHHHTHHHHHTTS--TTEEEEEECSCHHHHHHHHH---HTTCCC
T ss_pred CC-EEEEEECC-CHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHH---HCCCCC
T ss_conf 93-18999958-899999999999829--89689999899999999999---839984
No 87
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=32.27 E-value=15 Score=15.83 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=19.3
Q ss_pred CEEEEECCCCCHH-HHHHHHHCCCCCCEEECCCCHHHHHHH
Q ss_conf 5388808986289-999999638999606035998999999
Q T0533 7 VTYTFLGPQGTFT-EAALMQVPGAADATRIPCTNVNTALER 46 (313)
Q Consensus 7 ~~iayLGP~GSfS-~~AA~~~~~~~~~~~v~~~s~~~vf~a 46 (313)
|+|..+||+||=- -+|. .....-+.. +-|..+.|.+
T Consensus 1 m~I~i~GpPGSGK~T~a~-~La~~~~~~---~is~GdllR~ 37 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAE-QIIEKYEIP---HISTGDMFRA 37 (216)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHCCC---EEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHHCCE---EECHHHHHHH
T ss_conf 979998999998799999-999997997---8869999999
No 88
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=31.48 E-value=15 Score=15.74 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHC
Q ss_conf 7655388808986289999999638999606035998999999854
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA 49 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~ 49 (313)
|+.++||.-||.||=---.|+.....-+..++ +--..+.++.-
T Consensus 1 Mk~i~IaIDGpagSGKsT~ak~LA~~l~~~~l---dTG~lyRa~a~ 43 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASELSMIYV---DTGAMYRALTY 43 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE---CHHHHHHHHHH
T ss_conf 99559998789867889999999999499477---36699999999
No 89
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=31.24 E-value=18 Score=15.34 Aligned_cols=119 Identities=6% Similarity=-0.057 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCCC---HHHHHHHHHCCCCC
Q ss_conf 765538880898628999999963899960603599899999985499578776033078860---48878977427991
Q T0533 4 MSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGG---VTATLDAIATGQEL 80 (313)
Q Consensus 4 m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~---V~~tlD~L~~~~~l 80 (313)
..+|||..+||+||=--.-|......-+. .+-|..+++.+-.....++|-.--+.-..|. ...+..++.+ .
T Consensus 25 ~~~~riiilGpPGSGK~Tqa~~La~~~g~---~hIs~GdlLR~~i~~~s~lg~~i~~~~~~G~lvp~ei~~~ll~~-~-- 98 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGL---QHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS-E-- 98 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC---CCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH-H--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC---EEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--
T ss_conf 03144999899999879999999998798---88748999999884177677999998601136837888989998-8--
Q ss_pred EEEEEEEEEEEEEEEECCCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 79999997256788754799731211889746317889999998378966997165289999998
Q T0533 81 RIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLL 145 (313)
Q Consensus 81 ~Iv~E~~l~I~~~L~~~~~~~l~~I~~V~SHPqal~QC~~fL~~~~p~~~~v~~~STa~Aa~~v~ 145 (313)
+..+. ..--.+-.-|....|...+.+...++.-+.-..+.....+...
T Consensus 99 --------------~~~~~---~~~~ildGfPr~~~qa~~l~~~~~~~~vi~l~~~~~~~~~R~~ 146 (246)
T 2bbw_A 99 --------------LENRR---GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLS 146 (246)
T ss_dssp --------------HHTCT---TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHH
T ss_pred --------------HHHCC---CCHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf --------------64110---2201210154321468887641566747872230577776531
No 90
>2opl_A Hypothetical protein; NP_953832.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE P6G; 1.50A {Geobacter sulfurreducens} SCOP: d.227.1.1 PDB: 2opl_B*
Probab=28.78 E-value=25 Score=14.42 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCCEEEEECCC---------------CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
Q ss_conf 99999997389556764125---------------8889845699999865888388999999998751836786
Q T0533 218 EILDQFASRGVNLSRIESRP---------------TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFL 277 (313)
Q Consensus 218 ~vL~~F~~~gINLtkIeSRP---------------~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvL 277 (313)
.+....+.+||.+.+|+-+= .+.+.-+-.+.+++++..+++.++++++...++|.....|
T Consensus 100 ~~~~~A~~~gi~l~~l~v~ve~~~d~~g~~g~~~~~~~~~~~I~~~v~i~s~~~~e~~~~l~~~a~k~CpV~~tL 174 (187)
T 2opl_A 100 SLVAHAAARGIALRGVKSRYEGDIDLRGFLGLSEEVPVGYREIRVFFSIDADLTDGQKEELIRMAQKYSPVYNTV 174 (187)
T ss_dssp HHHHHHHHTTCCCSEEEEEEEEEEETTTTTTCCSSSCSSCSEEEEEEEEESSCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999987998535899999998113222556555553589999999807999999999999987209199995
No 91
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding protein; 2.00A {Sulfolobus tokodaii}
Probab=28.27 E-value=25 Score=14.36 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHC-------------------------CCCEEEEECC-CCCCCCCCEEEEEEEECC
Q ss_conf 378711799999999973-------------------------8955676412-588898456999998658
Q T0533 209 PEDHPGALMEILDQFASR-------------------------GVNLSRIESR-PTGQYLGHYFFSIDADGH 254 (313)
Q Consensus 209 ~~d~pGaL~~vL~~F~~~-------------------------gINLtkIeSR-P~~~~~~~Y~F~id~eg~ 254 (313)
..+.|+.+.+++..|.+- |-++|-..+. -..-+.|+.+||+|++|.
T Consensus 51 nE~dp~v~~Dl~~~l~~lvP~~~~y~h~~~~~n~~aHlks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~d~~ 122 (134)
T 1ve0_A 51 NEAESGLMKDFLNWAKKLVPPDGEFEHNIIDNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGP 122 (134)
T ss_dssp ECCCHHHHHHHHHHHHHHSCTTSCCGGGGTCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCS
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEECCCCCCEEEEEECCCC
T ss_conf 357502787899999765666786422205767777888752398289999899988567667999997799
No 92
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.38 E-value=26 Score=14.26 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=13.6
Q ss_pred CCCCCCEEEEECCCCCHH
Q ss_conf 777655388808986289
Q T0533 2 NAMSAVTYTFLGPQGTFT 19 (313)
Q Consensus 2 ~~m~~~~iayLGP~GSfS 19 (313)
|-...|+|...||+||=-
T Consensus 16 p~~~~m~Ivi~G~pGSGK 33 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGK 33 (201)
T ss_dssp CCCSCCEEEEECCTTSSH
T ss_pred CCCCCCEEEEECCCCCCH
T ss_conf 999974799989999998
No 93
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.36 E-value=23 Score=14.66 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCH----HHHHHHHHCCCCCCEEECCCCHHHHHHH
Q ss_conf 65538880898628----9999999638999606035998999999
Q T0533 5 SAVTYTFLGPQGTF----TEAALMQVPGAADATRIPCTNVNTALER 46 (313)
Q Consensus 5 ~~~~iayLGP~GSf----S~~AA~~~~~~~~~~~v~~~s~~~vf~a 46 (313)
..++|.++||+||= +..-|.+| +.. +-|..+++.+
T Consensus 15 ~~~riii~GpPGSGK~T~a~~La~~~----g~~---hIs~gdllR~ 53 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF----CVC---HLATGDMLRA 53 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH----TCE---EEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCE---EEEHHHHHHH
T ss_conf 86289998999998699999999986----984---7628999999
No 94
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=26.43 E-value=27 Score=14.15 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 97776553888089862899999996
Q T0533 1 SNAMSAVTYTFLGPQGTFTEAALMQV 26 (313)
Q Consensus 1 ~~~m~~~~iayLGP~GSfS~~AA~~~ 26 (313)
||+|+ |||++.|- |.-...-|+.+
T Consensus 1 ~~~m~-mkIg~IGl-G~MG~~la~~L 24 (299)
T 1vpd_A 1 SNAMT-MKVGFIGL-GIMGKPMSKNL 24 (299)
T ss_dssp ------CEEEEECC-STTHHHHHHHH
T ss_pred CCCCC-CEEEEEEE-HHHHHHHHHHH
T ss_conf 99644-51889810-89889999999
No 95
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.60 E-value=19 Score=15.08 Aligned_cols=39 Identities=5% Similarity=-0.007 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHH
Q ss_conf 655388808986289999999638999606035998999999
Q T0533 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALER 46 (313)
Q Consensus 5 ~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~a 46 (313)
++|+|..+||+||==..-|..+...-+. ++-+..+.+.+
T Consensus 4 ~P~~I~i~GppGSGKsT~a~~La~~~~~---~~is~g~llR~ 42 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL---AHISAGDLLRA 42 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC---EECCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC---EEECHHHHHHH
T ss_conf 9808999899999979999999999799---77848999999
No 96
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=25.33 E-value=28 Score=14.03 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=31.6
Q ss_pred CEEEEECCCCC-HHHHHHHHH---CCCCCCEEECCCCHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 53888089862-899999996---38999606035998999999854995787760330
Q T0533 7 VTYTFLGPQGT-FTEAALMQV---PGAADATRIPCTNVNTALERVRAGEADAAMVPIEN 61 (313)
Q Consensus 7 ~~iayLGP~GS-fS~~AA~~~---~~~~~~~~v~~~s~~~vf~aV~~g~~d~gVvPiEN 61 (313)
+|||...--+. +=-.+..+| +++-..+ +...+..++.+.+.+|++|+|+..-..
T Consensus 7 lrIg~~~~~~~~~lp~~l~~f~~~~P~v~l~-i~~~~~~~~~~~l~~~~~D~~i~~~~~ 64 (209)
T 2ql3_A 7 IAVGCYPALGPTILPSMLYAFTAEYPRASVE-FREDTQNRLRTQLEGGELDVAIVYDLD 64 (209)
T ss_dssp EEEEECGGGTTTTHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHTTSCSEEEEESSS
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9999678899999999999999988794899-998882898876617971588530456
No 97
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=24.73 E-value=29 Score=13.98 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC---CCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC
Q ss_conf 99999999738955676412588898---4569999986588838899999999875183678664234678776
Q T0533 217 MEILDQFASRGVNLSRIESRPTGQYL---GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADKQPA 288 (313)
Q Consensus 217 ~~vL~~F~~~gINLtkIeSRP~~~~~---~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp~~~~~p~ 288 (313)
-.++.+.+++||+++...||++.... ++|++-+ ++.....+....-.....+..|+.|....-.|.
T Consensus 67 ~~a~~vl~e~Gid~s~h~sr~lt~~~~~~aDlIi~M------~~~~~~~l~~~~P~~~~Ki~ll~~~~~~~dI~D 135 (167)
T 2fek_A 67 PTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTM------EKRHIERLCEMAPEMRGKVMLFGHWDNECEIPD 135 (167)
T ss_dssp HHHHHHHHHTTCCCTTCCCCBCCHHHHHHSSEEEES------CHHHHHHHHHHCGGGGGGEEEGGGGTTTCCCCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEE------CHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCC
T ss_conf 688999998497754655565848672569999995------889999999758865025886021078988899
No 98
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=24.47 E-value=29 Score=13.93 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=26.2
Q ss_pred CCCCCEEEEECCCCCHH---HHHHHHHCCCCCCEEEC-CCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 77655388808986289---99999963899960603-5998999999854995787760
Q T0533 3 AMSAVTYTFLGPQGTFT---EAALMQVPGAADATRIP-CTNVNTALERVRAGEADAAMVP 58 (313)
Q Consensus 3 ~m~~~~iayLGP~GSfS---~~AA~~~~~~~~~~~v~-~~s~~~vf~aV~~g~~d~gVvP 58 (313)
.|+++|||..|- |... |..+++.. .+++++. |+.-.+-.+++.+ .|+..+
T Consensus 2 ~m~~irigiiG~-G~~~~~~h~~~l~~~--~~~~lvav~d~~~~~~~~~~~---~~~~~~ 55 (359)
T 3m2t_A 2 SLSLIKVGLVGI-GAQMQENLLPSLLQM--QDIRIVAACDSDLERARRVHR---FISDIP 55 (359)
T ss_dssp -CCCEEEEEECC-SHHHHHTHHHHHHTC--TTEEEEEEECSSHHHHGGGGG---TSCSCC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHH---HCCCCC
T ss_conf 842558999947-199999999999839--995899998899999999998---849985
No 99
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, structure, hydrolase; NMR {Methanosarcina mazei GO1}
Probab=24.42 E-value=22 Score=14.66 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=45.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEE-CCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 53888089862899999996389996060-35998999999854995787760330788604887897742799179999
Q T0533 7 VTYTFLGPQGTFTEAALMQVPGAADATRI-PCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIRE 85 (313)
Q Consensus 7 ~~iayLGP~GSfS~~AA~~~~~~~~~~~v-~~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv~E 85 (313)
||||..|.+-|-. -.++.|-.+...+ .-....+.|..+.+.+ |||||=|.+.+...+.+.++.......+.++-+
T Consensus 1 MKIaVIGd~dtv~---GFrLaGi~~v~~~~~~ee~~~~l~~l~~~~-d~gII~ite~~~~~i~~~i~~~~~~~~~P~il~ 76 (101)
T 2ov6_A 1 MELAVIGKSEFVT---GFRLAGISKVYETPDIPATESAVRSVLEDK-SVGILVMHNDDIGNLPEVLRKNLNESVQPTVVA 76 (101)
T ss_dssp CCEEEEECHHHHH---HHHHHTCCEEEECCSTTTHHHHHHHHHHHT-SSSEEEEEHHHHTTCTTTTHHHHHHHCCSCEEE
T ss_pred CEEEEECCHHHHH---HHHHCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9899995889889---999708871236899899999999996189-859999717999875799999985688467998
No 100
>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} SCOP: c.37.1.1
Probab=24.30 E-value=28 Score=14.10 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=21.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHH
Q ss_conf 77655388808986289999999638999606035998999999
Q T0533 3 AMSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALER 46 (313)
Q Consensus 3 ~m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~a 46 (313)
.|..++|...||+||==-.-|..+...-+..++ +..+.+..
T Consensus 1 ~~~~p~Iii~G~pGsGKSTia~~La~~l~~~~i---~~~~~~~~ 41 (173)
T 1rkb_A 1 LMLLPNILLTGTPGVGKTTLGKELASKSGLKYI---NVGDLARE 41 (173)
T ss_dssp CCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEE---EHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE---ECHHHHHH
T ss_conf 977785989889999989999999999799889---64579998
No 101
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=28 Score=14.04 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCCE---EEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCC
Q ss_conf 7999999999738955---6764125888984569999986588838899999999875183678664234678776457
Q T0533 215 ALMEILDQFASRGVNL---SRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADKQPAVVA 291 (313)
Q Consensus 215 aL~~vL~~F~~~gINL---tkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~al~eL~~~~~~vkvLGsYp~~~~~p~~~~ 291 (313)
.=-++-+.|...|--. .++.-++..++.--|- ||+++ +.+..+.||+++........+..+=++...++.+++
T Consensus 21 te~~L~~~F~~fG~i~v~~~~~~~d~~tg~~kG~a-FV~F~---~~e~a~~Ai~~~~~~~g~~~~~~~~~~~~~k~v~vr 96 (114)
T 2dnl_A 21 DEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYA-FLLFQ---EESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIR 96 (114)
T ss_dssp CHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEE-EECCS---SHHHHHHHHHHSEEETTEEEEEECCSSSCSEEEEEE
T ss_pred CHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEE-EEEEC---CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf 78899876751787798787886016678747658-99989---999999999971565674889860550358733876
Q ss_pred C
Q ss_conf 8
Q T0533 292 P 292 (313)
Q Consensus 292 ~ 292 (313)
|
T Consensus 97 P 97 (114)
T 2dnl_A 97 P 97 (114)
T ss_dssp C
T ss_pred C
T ss_conf 5
No 102
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=21.04 E-value=34 Score=13.50 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=27.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHH
Q ss_conf 77765538880898628999999963899960603599899999985
Q T0533 2 NAMSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVR 48 (313)
Q Consensus 2 ~~m~~~~iayLGP~GSfS~~AA~~~~~~~~~~~v~~~s~~~vf~aV~ 48 (313)
|.|+++.||.=||.||=---.|+.....-+..++ +--..+.++.
T Consensus 12 ~km~~~~IaIDGPagSGKSTvak~LAk~Lg~~~l---dTG~lYRa~a 55 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL---DTGAMYRAAT 55 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE---EHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE---CHHHHHHHHH
T ss_conf 4446728998799978889999999999299288---8249999999
Done!