Query T0534 ZP_02066800.1, Bacteroides ovatus, 384 residues
Match_columns 384
No_of_seqs 198 out of 295
Neff 5.6
Searched_HMMs 22458
Date Fri May 21 18:06:12 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0534.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0534.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3da4_A Colicin-M; phosphatase, 53.1 3.8 0.00017 19.2 1.3 19 365-383 128-146 (279)
2 2vs0_A Virulence factor ESXA; 52.1 9.6 0.00043 16.3 6.9 79 32-122 6-84 (97)
3 3fav_A ESAT-6-like protein ESX 45.5 12 0.00054 15.6 5.0 79 32-122 7-85 (101)
4 3fav_B ESAT-6, 6 kDa early sec 41.9 14 0.00061 15.3 6.9 71 32-112 5-75 (94)
5 1cpq_A Cytochrome C'; electron 31.5 19 0.00087 14.1 6.4 103 185-303 11-116 (129)
6 1e85_A Cytochrome C'; electron 28.8 21 0.00096 13.8 6.3 97 187-303 15-114 (127)
7 3m2t_A Probable dehydrogenase; 28.0 16 0.0007 14.8 1.1 57 247-303 58-117 (359)
8 3f7c_A Protein of unknown func 27.0 23 0.001 13.6 5.7 37 194-232 72-109 (200)
9 1bbh_A Cytochrome C'; electron 25.5 25 0.0011 13.4 6.6 107 185-304 13-120 (131)
10 3evy_A Putative type I restric 23.1 27 0.0012 13.1 4.4 25 274-298 185-209 (239)
11 1lc0_A Biliverdin reductase A; 22.6 20 0.0009 14.0 0.8 56 249-304 57-115 (294)
12 3h6p_C ESAT-6-like protein ESX 22.3 28 0.0012 13.0 5.2 71 32-112 6-76 (96)
No 1
>3da4_A Colicin-M; phosphatase, antibiotic, antimicrobial, bacteriocin, plasmid, TONB box; 1.70A {Escherichia coli} PDB: 3da3_A
Probab=53.06 E-value=3.8 Score=19.21 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHCCCCCCC
Q ss_conf 4425777776204887566
Q T0534 365 RGFHTLEFLLYKNGEPRKV 383 (384)
Q Consensus 365 qGfhAiEyLLf~dG~~r~~ 383 (384)
.=|+|+-+-|||+|.+|++
T Consensus 128 TPf~A~aHyLfGNG~~RSv 146 (279)
T 3da4_A 128 TPIVALAHYLWGNGAERSV 146 (279)
T ss_dssp HHHHHHHHHHHSTTCCEEE
T ss_pred CHHHHHHHHHHCCCCEEEE
T ss_conf 7399999887469961046
No 2
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=52.13 E-value=9.6 Score=16.34 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45323566620168899999999999999999998710123455046899852367655456789999999999999987
Q T0534 32 VDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANE 111 (384)
Q Consensus 32 ~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~E 111 (384)
++|.-+.-+..+..+...-+......|...+..|...|.- .+..+|.+.|.. ....+.+|.+.+..++..
T Consensus 6 V~pe~l~~~A~~~~~~~~~i~~~~~~L~~~v~~L~~~W~G--~a~~af~~~~~~--------~~~~~~~~~~~L~~~~~~ 75 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEG--QAFSRFEEQFQQ--------LSPKVEKFAQLLEEIKQQ 75 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 1699999999999999999999999999999998855675--768999999999--------999999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 52034421120
Q T0534 112 VGTAKIGDPYN 122 (384)
Q Consensus 112 l~~eKig~pl~ 122 (384)
|.. +...|.
T Consensus 76 L~~--~a~~~~ 84 (97)
T 2vs0_A 76 LNS--TADAVQ 84 (97)
T ss_dssp HHH--HHHHHH
T ss_pred HHH--HHHHHH
T ss_conf 999--999999
No 3
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} PDB: 1wa8_A
Probab=45.54 E-value=12 Score=15.65 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45323566620168899999999999999999998710123455046899852367655456789999999999999987
Q T0534 32 VDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANE 111 (384)
Q Consensus 32 ~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~E 111 (384)
+||.-+.-+...-++-.+-|......|...+..|...|.-. +..+|.+.+.. ......+|...+-.|+..
T Consensus 7 vd~~~L~~~A~~~~~~~~~l~~~l~~l~~~~~~l~~~W~G~--a~~af~~~~~~--------~~~~~~~~~~~L~~~~~~ 76 (101)
T 3fav_A 7 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGA--AGTAAQAAVVR--------FQEAANKQKQELDEISTN 76 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHH--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 28999999999999999999999999999999988564565--77999999999--------999999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 52034421120
Q T0534 112 VGTAKIGDPYN 122 (384)
Q Consensus 112 l~~eKig~pl~ 122 (384)
|.. .+..|.
T Consensus 77 L~~--~a~~y~ 85 (101)
T 3fav_A 77 IRQ--AGVQYS 85 (101)
T ss_dssp HHH--HHHHHC
T ss_pred HHH--HHHHHH
T ss_conf 999--999999
No 4
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} PDB: 1wa8_B
Probab=41.86 E-value=14 Score=15.26 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45323566620168899999999999999999998710123455046899852367655456789999999999999987
Q T0534 32 VDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANE 111 (384)
Q Consensus 32 ~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~E 111 (384)
.|+..++-.........+=|....+.|...+..|...|.-. ++.+|...+.. ...+..+|...+..|..-
T Consensus 5 ~d~a~~~~~a~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~--A~~af~~~~~~--------w~~~~~~l~~~L~~i~~~ 74 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGS--GSEAYQGVQQK--------WDATATELNNALQNLART 74 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCT--TCHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 05999999999999999999999999999999999886220--78999999999--------999999999999999999
Q ss_pred H
Q ss_conf 5
Q T0534 112 V 112 (384)
Q Consensus 112 l 112 (384)
|
T Consensus 75 l 75 (94)
T 3fav_B 75 I 75 (94)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=31.52 E-value=19 Score=14.14 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998720126624485468999999999999988753455402467733---11348999998862332
Q T0534 185 TKIKNAIQKAAKAIQDIPQPFRNHIPSNETVAAMDACAELESILKNDLKSYIANNSNNIN---TDAVLNPVVTQYVDAVV 261 (384)
Q Consensus 185 ~~i~~~i~~a~~ai~aI~~Pf~~~i~~~~~~~a~~a~~~l~~~l~~~~~~~~~q~~~~~~---~~~~~~avv~n~aD~vI 261 (384)
+.+...|......|.++..|| .....+.+. ..|..++...+.++.-.-+.+.. .-.++.+|=++..
T Consensus 11 q~~mk~~~~~~~~l~~m~k~~----d~~~~~~~a---a~~~~~~~~~~~~~Fp~gs~~~~~~g~t~A~p~IW~~~~---- 79 (129)
T 1cpq_A 11 EAYFKSLGGSMKAMTGVAKAF----DAEAAKVEA---AKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMD---- 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----CHHHHHHHH---HHHHHHTTCCCGGGCCTTCSTTTSTTTCCBCTHHHHSHH----
T ss_pred HHHHHHHHHHHHHHHHHCCCC----CHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHH----
T ss_conf 999999999999999770876----899999999---999999852026428898767777898756778872999----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 577999999999999999998728998789999999999999
Q T0534 262 VPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITARE 303 (384)
Q Consensus 262 ~P~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~ 303 (384)
+|......|..++.+|.+.-...++.+++.+|.....
T Consensus 80 -----~F~~~~~~~~~aa~~L~~aa~~gD~~~~~~a~~~vg~ 116 (129)
T 1cpq_A 80 -----DFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGG 116 (129)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -----9999999999999999998864899999999999986
No 6
>1e85_A Cytochrome C'; electron transport, heme, 4-helix bundle, nitric oxide; HET: HEC; 1.35A {Achromobacter xylosoxidans} SCOP: a.24.3.2 PDB: 1e83_A* 1e84_A* 1e86_A* 1cgo_A* 1cgn_A*
Probab=28.83 E-value=21 Score=13.83 Aligned_cols=97 Identities=9% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHH---CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998720---1266244854689999999999999887534554024677331134899999886233257
Q T0534 187 IKNAIQKAAKAIQDIP---QPFRNHIPSNETVAAMDACAELESILKNDLKSYIANNSNNINTDAVLNPVVTQYVDAVVVP 263 (384)
Q Consensus 187 i~~~i~~a~~ai~aI~---~Pf~~~i~~~~~~~a~~a~~~l~~~l~~~~~~~~~q~~~~~~~~~~~~avv~n~aD~vI~P 263 (384)
+...|......|.+|- .||. ...++.+.+.+..|+..+. +.-| .|+..+ .++.+|=++..
T Consensus 15 ~mk~~~~~~~~l~~m~kg~~~yd----a~~~~~~a~~l~~~s~~~~-~~F~-----~gs~~~-~Akp~IW~~~~------ 77 (127)
T 1e85_A 15 ALTLMASHFGRMTPVVKGQAPYD----AAQIKANVEVLKTLSALPW-AAFG-----PGTEGG-DARPEIWSDAA------ 77 (127)
T ss_dssp HHHHHHHHHHTTHHHHTTSSCCC----HHHHHHHHHHHHHHHTSSG-GGSC-----TTCCCT-TBCTHHHHTHH------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHCCCH-HHCC-----CCCCCC-CCCHHHHCCHH------
T ss_conf 99999999999999978999889----9999999999999841408-6479-----999988-75889880999------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999998728998789999999999999
Q T0534 264 TYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITARE 303 (384)
Q Consensus 264 ~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~ 303 (384)
+|......|..++..|.+.-....+++++.++.....
T Consensus 78 ---~F~~~~~~~~~aa~~L~~aa~~gD~~~~~~a~~~vg~ 114 (127)
T 1e85_A 78 ---SFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGA 114 (127)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---8999999999999999998865899999999999985
No 7
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=27.96 E-value=16 Score=14.79 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3489999988-623325--77999999999999999998728998789999999999999
Q T0534 247 AVLNPVVTQY-VDAVVV--PTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITARE 303 (384)
Q Consensus 247 ~~~~avv~n~-aD~vI~--P~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~ 303 (384)
..+++++++- +|.|++ |...-+.....+|..-...||..|=..+++.++.-...++.
T Consensus 58 ~~~~ell~~~~~D~V~I~tp~~~H~~~a~~al~~GkhVl~EKPla~~~~ea~~l~~~a~~ 117 (359)
T 3m2t_A 58 DNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp SSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 899999659999989987865662589999974399627976400014688998888876
No 8
>3f7c_A Protein of unknown function (DUF416); YP_958225.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=26.97 E-value=23 Score=13.61 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred HHHHHHHH-HCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999872-0126624485468999999999999988753
Q T0534 194 AAKAIQDI-PQPFRNHIPSNETVAAMDACAELESILKNDL 232 (384)
Q Consensus 194 a~~ai~aI-~~Pf~~~i~~~~~~~a~~a~~~l~~~l~~~~ 232 (384)
-..++..| |.| .....=-+..|+|||..|+.+|..-+
T Consensus 72 qleklE~~iPd~--~dfd~yGvyPA~DAc~AL~~~L~~~l 109 (200)
T 3f7c_A 72 LLSKLETLCPNV--DEYDAYGVYPAFDFCQLLEQALLNRL 109 (200)
T ss_dssp HHHHHHHHCCCG--GGCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH--HHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999998729990--53014056089999999999999987
No 9
>1bbh_A Cytochrome C'; electron transport(heme protein); HET: HEM; 1.80A {Allochromatium vinosum} SCOP: a.24.3.2
Probab=25.46 E-value=25 Score=13.42 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999872012662448546899999999999998875345540246-77331134899999886233257
Q T0534 185 TKIKNAIQKAAKAIQDIPQPFRNHIPSNETVAAMDACAELESILKNDLKSYIANNS-NNINTDAVLNPVVTQYVDAVVVP 263 (384)
Q Consensus 185 ~~i~~~i~~a~~ai~aI~~Pf~~~i~~~~~~~a~~a~~~l~~~l~~~~~~~~~q~~-~~~~~~~~~~avv~n~aD~vI~P 263 (384)
+.+...|...+..|.++-. ...+...+..+.+.+..|+...-...-|.-++.. +.+.++ +..+|=+
T Consensus 13 q~~mk~~~~~~~~l~~m~k---g~~d~~~~~~~a~~l~~~a~~~~~~~Fp~gs~~~~~~~~s~-Ak~~IW~--------- 79 (131)
T 1bbh_A 13 QAGYEFMGWNMGKIKANLE---GEYNAAQVEAAANVIAAIANSGMGALYGPGTDKNVGDVKTR-VKPEFFQ--------- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHTSCGGGGSCGGGGSCBTTBCCC-BCGGGTT---------
T ss_pred HHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCC-CHHHHHH---------
T ss_conf 9999999999999999874---76889999999999999875418863899987677777551-2068887---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999987289987899999999999998
Q T0534 264 TYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREP 304 (384)
Q Consensus 264 ~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~~ 304 (384)
...+|......|..++..|...-...++++++.++......
T Consensus 80 ~~~~F~~~~~~~~~aa~~L~~aa~~~d~~~~~~a~~~vg~t 120 (131)
T 1bbh_A 80 NMEDVGKIAREFVGAANTLAEVAATGEAEAVKTAFGDVGAA 120 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 89989999999999999999988748999999999999877
No 10
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=23.11 E-value=27 Score=13.12 Aligned_cols=25 Identities=8% Similarity=-0.034 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999987289987899999999
Q T0534 274 ALYNAVIVLADNPSNSAFETACDAW 298 (384)
Q Consensus 274 aL~~Ai~af~a~Pt~~~L~aAr~AW 298 (384)
.+....+.|...--+..+...+..|
T Consensus 185 ~i~~~~~~~~~~~~~~~l~~~a~~~ 209 (239)
T 3evy_A 185 DMESDLDKYIATQKAIAIEQVATEE 209 (239)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4999999999999999999999994
No 11
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=22.63 E-value=20 Score=14.04 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999988-623--325779999999999999999987289987899999999999998
Q T0534 249 LNPVVTQY-VDA--VVVPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREP 304 (384)
Q Consensus 249 ~~avv~n~-aD~--vI~P~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~~ 304 (384)
+++++++- +|. |..|+...+...-.+|..-...||..|=..+++.++.-...++..
T Consensus 57 ~~ell~~~~iDaV~I~tp~~~H~~~~~~al~~gkhV~~EKPla~~~~e~~~l~~~a~~~ 115 (294)
T 1lc0_A 57 LEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQK 115 (294)
T ss_dssp HHHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99995499998999928956668999999975997342067638999999999999981
No 12
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein structure initiative; 1.91A {Mycobacterium tuberculosis}
Probab=22.33 E-value=28 Score=13.01 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45323566620168899999999999999999998710123455046899852367655456789999999999999987
Q T0534 32 VDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANE 111 (384)
Q Consensus 32 ~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~E 111 (384)
+||..+.-+.+-..+...=|....+.|...++.|...|.-. +..+|.+.+.. ......+|..-+..|...
T Consensus 6 ~~~~~m~~~a~~~~~~~~~l~~~l~~l~~~~~~l~~~W~G~--A~~af~~~~~~--------w~~~~~~m~~~L~~i~~~ 75 (96)
T 3h6p_C 6 YNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGD--TGITYQGWQTQ--------WNQALEDLVRAYQSMSGT 75 (96)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTGGGCCTT--SSSCHHHHHHH--------HHHHHHHHHHHHHHHHCC
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 67999999999999999999999999999999888656760--79999999999--------999999999999999999
Q ss_pred H
Q ss_conf 5
Q T0534 112 V 112 (384)
Q Consensus 112 l 112 (384)
|
T Consensus 76 l 76 (96)
T 3h6p_C 76 H 76 (96)
T ss_dssp -
T ss_pred H
T ss_conf 9
Done!