Query T0534 ZP_02066800.1, Bacteroides ovatus, 384 residues
Match_columns 384
No_of_seqs 198 out of 295
Neff 5.6
Searched_HMMs 11830
Date Fri May 21 18:07:05 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0534.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0534.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09375 Peptidase_M75: Imelys 99.9 1.7E-26 1.4E-30 206.8 11.0 163 44-229 120-283 (285)
2 PF09375 Peptidase_M75: Imelys 99.9 3E-25 2.6E-29 197.7 17.0 118 261-383 1-119 (285)
3 PF12262 Lipase_bact_N: Bacter 65.1 1.7 0.00015 19.7 2.6 25 2-29 1-25 (268)
4 PF06013 WXG100: Proteins of 1 46.3 6.2 0.00052 15.7 5.9 72 32-113 4-75 (86)
5 PF08656 DASH_Dad3: DASH compl 45.1 6.4 0.00054 15.6 4.7 42 260-301 7-50 (78)
6 PF05842 Euplotes_phero: Euplo 42.7 4.5 0.00038 16.7 1.7 22 2-23 1-22 (153)
7 PF01322 Cytochrom_C_2: Cytoch 38.3 8.1 0.00068 14.9 5.5 100 186-304 9-113 (122)
8 PF10807 DUF2541: Protein of u 32.3 10 0.00084 14.2 2.1 25 2-27 1-25 (134)
9 PF08139 LPAM_1: Prokaryotic m 31.5 6.6 0.00056 15.5 1.1 20 1-25 7-26 (26)
10 PF03791 KNOX2: KNOX2 domain ; 28.7 11 0.00096 13.8 5.5 42 179-229 7-48 (52)
11 PF10671 TcpQ: Toxin co-regula 28.5 7.2 0.00061 15.2 0.9 20 2-26 1-20 (169)
12 PF00604 Flu_PB2: Influenza RN 28.4 12 0.00097 13.8 2.4 58 8-71 394-451 (759)
13 PF04222 DUF416: Protein of un 25.6 13 0.0011 13.4 5.0 40 211-257 59-98 (111)
14 PF04129 Vps52: Vps52 / Sac2 f 21.8 15 0.0013 12.9 7.5 48 144-198 155-202 (511)
15 PF07022 Phage_CI_repr: Bacter 20.9 11 0.00096 13.8 0.7 13 369-381 54-66 (66)
16 PF09432 THP2: Tho complex sub 20.5 16 0.0014 12.8 9.1 29 147-180 96-124 (132)
17 PF02438 Adeno_100: Late 100kD 20.2 15 0.0013 12.9 1.2 37 220-265 334-370 (583)
No 1
>PF09375 Peptidase_M75: Imelysin
Probab=99.93 E-value=1.7e-26 Score=206.77 Aligned_cols=163 Identities=29% Similarity=0.495 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 68899999999999999999998710123455046899852367655456789999999999999987520344211203
Q T0534 44 ASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANEVGTAKIGDPYNL 123 (384)
Q Consensus 44 ~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~El~~eKig~pl~~ 123 (384)
.+++++||+++++.|+.++++|.++|.+. ..+|++.|++ |+.+++.+|++||+++.+||+++|||.|++
T Consensus 120 ~~~~~~yl~ava~~L~~~~~~L~~~W~~~---~~~~~~~~~~-------~~~~a~~~l~~~~~~~~~~v~~~ki~~pl~- 188 (285)
T PF09375_consen 120 ADFRCAYLKAVAEDLAADAQELEDAWQAS---DGNYAAAFLA-------SPQEALNELLNGLIELLEEVADEKIGKPLG- 188 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 02457899999999999999999999885---1227888642-------531239999999999999999877512235-
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56543311113311200143499999989999998616776544400089999841878899999999999999987201
Q T0534 124 YKAGNTEEALYAVESWYSWHSRDDYTNNIYSIRNAYYGSLDGNINANSLSTVIAGANSSLDTKIKNAIQKAAKAIQDIPQ 203 (384)
Q Consensus 124 ~~~~~~~~~~~~vES~yS~nS~~d~~~Ni~gI~NvY~G~y~g~~~g~Sl~dlV~~~d~~L~~~i~~~i~~a~~ai~aI~~ 203 (384)
..+|..+|||||+||+.|+..|+.|++++|+|+ |.||.++|.+.++.|+.+|+.+|+.+.+++++|+.
T Consensus 189 ------~~~p~~~e~~~S~~sl~~~~anl~g~~~~~~g~------~~~l~~~l~~~~~~l~~~i~~~~~~~~~~l~~l~~ 256 (285)
T PF09375_consen 189 ------APDPEGEESWYSGNSLADIKANLEGLQNLYLGG------GSGLDDLLAAQDPELADQIRAQFDAARAALAALPD 256 (285)
T ss_pred ------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ------898213377715470999999999999999875------76499999816988999999999999999987125
Q ss_pred CHHHCCCCHHHHHHHHH-HHHHHHHHH
Q ss_conf 26624485468999999-999999988
Q T0534 204 PFRNHIPSNETVAAMDA-CAELESILK 229 (384)
Q Consensus 204 Pf~~~i~~~~~~~a~~a-~~~l~~~l~ 229 (384)
||+++|.+++.+..+.+ |.+|+..+.
T Consensus 257 p~~~~~~~~~~~~~~~~~~~~L~~~~~ 283 (285)
T PF09375_consen 257 PLDQALADDEARALLAAAINALSELLA 283 (285)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 386662688899999999999999985
No 2
>PF09375 Peptidase_M75: Imelysin
Probab=99.93 E-value=3e-25 Score=197.72 Aligned_cols=118 Identities=32% Similarity=0.640 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 25779999999999999999987289987899999999999998987544551663300200222016786246887764
Q T0534 261 VVPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREPWEKSEAFLFGPVDEMGLDPNMDSWPLDQNAIVQILN 340 (384)
Q Consensus 261 I~P~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~~W~qsE~f~FGPa~~~~~~~~InsWPld~~~I~~~l~ 340 (384)
|+|+|+++++++.+|.+++++||++|++++|++||.+|+.||.+|+++|+|+|||+.+ ++++|++||++++.|++.+.
T Consensus 1 i~p~y~~~~~~~~~L~~a~~~~~~~p~~~~L~~ar~aw~~a~~~w~~~e~~~~GP~~~--~~~~i~~wP~~~~~id~~i~ 78 (285)
T PF09375_consen 1 ILPAYADLADAAQALETAAQAFCAAPNAANLAAARAAWLQARLAWERIEAFRFGPADD--RDPRIDFWPDNFGDIDRQID 78 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CHHHHHCCCCCCCHHHHHHH
T ss_conf 9457999999999999999999869896679999999999999999978888253210--04677607887025789987
Q ss_pred HHHCCHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCC-CCCCC
Q ss_conf 41000000132211333100000244257777762048-87566
Q T0534 341 SQSWSDLEWSEGDDEAAVESAQNVRGFHTLEFLLYKNG-EPRKV 383 (384)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~s~~~qGfhAiEyLLf~dG-~~r~~ 383 (384)
.. ..+.....++.+.+.++..+||||||||||+++ .+|++
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~Gf~AlEylLf~~~~~~~~~ 119 (285)
T PF09375_consen 79 AR---DEDSDDLTPENLADLSVAFQGFHALEYLLFGDDAGARKA 119 (285)
T ss_pred HC---CCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 43---256554797885035744578999999980888765653
No 3
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=65.14 E-value=1.7 Score=19.68 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5206889999999874101124678776
Q T0534 2 MKTKFFYVAALILGLAFTTTSCSSDDDN 29 (384)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~d~~ 29 (384)
|||+|.+++-+ - .+.+++|+.++..
T Consensus 1 Mkk~~l~~~ia-s--al~LaGCg~ds~~ 25 (268)
T PF12262_consen 1 MKKKLLSLAIA-S--ALGLAGCGGDSES 25 (268)
T ss_pred CCHHHHHHHHH-H--HHHCCCCCCCCCC
T ss_conf 94358999999-9--9751114799767
No 4
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 This family consists of several short bacterial proteins of unknown function.; PDB: 3h6p_D 1wa8_B 2vrz_B 2vs0_A 2gts_A.
Probab=46.25 E-value=6.2 Score=15.72 Aligned_cols=72 Identities=13% Similarity=0.267 Sum_probs=48.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45323566620168899999999999999999998710123455046899852367655456789999999999999987
Q T0534 32 VDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNSSYKGGESYASLFKAHSGSPYASALSCVEEIVDKCAEIANE 111 (384)
Q Consensus 32 ~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~~~~~~~~y~~~~~~~~~s~y~s~~~ai~~ii~Gm~~i~~E 111 (384)
+||.-+.-....-.+..+=|......|...+..|...|.- .++.+|.+.+.. ....+.++.+.+..+...
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G--~a~~af~~~~~~--------~~~~~~~~~~~L~~~~~~ 73 (86)
T PF06013_consen 4 VDPEELRAAAGRLQDAAEDLESILQQLESALQALQSSWKG--AAADAFQEAQTQ--------WQQAAQKLNEALQEIAEA 73 (86)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S--HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 4599999999999999999999999999999988735886--689999999999--------999999999999999999
Q ss_pred HH
Q ss_conf 52
Q T0534 112 VG 113 (384)
Q Consensus 112 l~ 113 (384)
|.
T Consensus 74 l~ 75 (86)
T PF06013_consen 74 LD 75 (86)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 5
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis . In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro , .
Probab=45.15 E-value=6.4 Score=15.61 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
Q ss_conf 32577999999999999999998--7289987899999999999
Q T0534 260 VVVPTYKSLKEKNDALYNAVIVL--ADNPSNSAFETACDAWITA 301 (384)
Q Consensus 260 vI~P~Y~dl~~~a~aL~~Ai~af--~a~Pt~~~L~aAr~AW~~A 301 (384)
=|+--|+.++.....|...+..+ ...|++.-|+..|.-=...
T Consensus 7 ~VL~eY~~La~~l~~Ls~~l~~L~~~~~p~~~~Ld~LR~LE~K~ 50 (78)
T PF08656_consen 7 EVLDEYQRLADNLNKLSDELKDLTSTNSPSEELLDNLRELERKI 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999998768999998715897699999999999999
No 6
>PF05842 Euplotes_phero: Euplotes octocarinatus mating pheromone protein; InterPro: IPR008612 This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate Euplotes octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells .; GO: 0005186 pheromone activity, 0007154 cell communication, 0005576 extracellular region
Probab=42.66 E-value=4.5 Score=16.68 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5206889999999874101124
Q T0534 2 MKTKFFYVAALILGLAFTTTSC 23 (384)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~ 23 (384)
||--|.+|+-|++-|+|-||+-
T Consensus 1 mkaifiilailmvtqafkmtsk 22 (153)
T PF05842_consen 1 MKAIFIILAILMVTQAFKMTSK 22 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9218999999999999999999
No 7
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR012127 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes . Ambler recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C-terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins . This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein . The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core . The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding .; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0006118 electron transport, 0042597 periplasmic space; PDB: 2ccy_B 1bbh_B 1cgo_A 1cgn_A 1e83_A 1e85_A 1e84_A 1e86_A 1jaf_A 2j8w_B ....
Probab=38.28 E-value=8.1 Score=14.88 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHH---CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 99999999999998720---1266244854689999999999999887534554024677331--134899999886233
Q T0534 186 KIKNAIQKAAKAIQDIP---QPFRNHIPSNETVAAMDACAELESILKNDLKSYIANNSNNINT--DAVLNPVVTQYVDAV 260 (384)
Q Consensus 186 ~i~~~i~~a~~ai~aI~---~Pf~~~i~~~~~~~a~~a~~~l~~~l~~~~~~~~~q~~~~~~~--~~~~~avv~n~aD~v 260 (384)
.+...|......|.+|- .|| +...++++.+.+.+++..+..- .| .|+... -.++++|-++.
T Consensus 9 ~~m~~~~~~~~~l~~m~kg~~~~----da~~~~~~a~~l~~~a~~~~~~-F~-----~gs~~~~~t~A~p~IW~~~---- 74 (122)
T PF01322_consen 9 AAMKEIGANMKPLGAMAKGEKPY----DAAAAKAAAANLAALAKSPPDH-FP-----EGSDKGDGTEAKPAIWEDP---- 74 (122)
T ss_dssp HHHHHHHHHHCCHHHHHGC-TT-----SHHHHHHHHHHHHHHHTSCGGG-G------CCGTTTTS-SBSTHHHHTH----
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHHHHHHHH-CC-----CCCCCCCCCCCCHHHHHCH----
T ss_conf 99999999999999998699989----9999999999999998211653-78-----9998887454469988199----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 25779999999999999999987289987899999999999998
Q T0534 261 VVPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREP 304 (384)
Q Consensus 261 I~P~Y~dl~~~a~aL~~Ai~af~a~Pt~~~L~aAr~AW~~Ar~~ 304 (384)
.+|...+..|..++..+.......++++++.+|......
T Consensus 75 -----~~F~~~~~~~~~aa~~l~~aa~~~D~~~~~~a~~~v~~~ 113 (122)
T PF01322_consen 75 -----EDFKAKAQAFQEAAAALAAAAKSGDLAALKAAFGAVGKS 113 (122)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHH---H
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf -----989999999999999999988717999999999999989
No 8
>PF10807 DUF2541: Protein of unknown function (DUF2541)
Probab=32.25 E-value=10 Score=14.23 Aligned_cols=25 Identities=48% Similarity=0.678 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 52068899999998741011246787
Q T0534 2 MKTKFFYVAALILGLAFTTTSCSSDD 27 (384)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~d 27 (384)
||--|-..++|++||.|+.++. .+|
T Consensus 1 m~s~~tmSa~lll~la~~~~A~-An~ 25 (134)
T PF10807_consen 1 MKSVLTMSAALLLGLALSTTAH-AND 25 (134)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf 9118888999999998744002-375
No 9
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 This family consists of the homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection .
Probab=31.54 E-value=6.6 Score=15.51 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9520688999999987410112467
Q T0534 1 MMKTKFFYVAALILGLAFTTTSCSS 25 (384)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~ 25 (384)
||||-.|.+.|+.. .++|++
T Consensus 7 ~~Kkil~~~~a~~~-----LaGCss 26 (26)
T PF08139_consen 7 MMKKILFLLLALFM-----LAGCSS 26 (26)
T ss_pred HHHHHHHHHHHHHH-----HHHCCC
T ss_conf 89999999999999-----833149
No 10
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization .; GO: 0003677 DNA binding, 0005634 nucleus
Probab=28.70 E-value=11 Score=13.82 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=24.0
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 187889999999999999998720126624485468999999999999988
Q T0534 179 ANSSLDTKIKNAIQKAAKAIQDIPQPFRNHIPSNETVAAMDACAELESILK 229 (384)
Q Consensus 179 ~d~~L~~~i~~~i~~a~~ai~aI~~Pf~~~i~~~~~~~a~~a~~~l~~~l~ 229 (384)
.||+||+=+.+=.+--.+==+....||+ -|+..|.++..-|+
T Consensus 7 ~dpELDqFMeaYc~~L~kykeeL~~p~~---------EA~~f~~~ie~qL~ 48 (52)
T PF03791_consen 7 ADPELDQFMEAYCDMLVKYKEELQRPFR---------EAMMFCNEIEQQLQ 48 (52)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_conf 8831899999999999999999988999---------99999999999999
No 11
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q
Probab=28.54 E-value=7.2 Score=15.24 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5206889999999874101124678
Q T0534 2 MKTKFFYVAALILGLAFTTTSCSSD 26 (384)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~ 26 (384)
|||| |++ +-++++++ +|++-
T Consensus 1 ~kkn-~i~--~~~~i~ls--Gcs~~ 20 (169)
T PF10671_consen 1 MKKN-LIA--ITLAIMLS--GCSSI 20 (169)
T ss_pred CCCC-EEH--HHHHHHHC--CCCCC
T ss_conf 9740-303--77898842--63334
No 12
>PF00604 Flu_PB2: Influenza RNA-dependent RNA polymerase subunit PB2; InterPro: IPR001591 Orthomyxoviridae RNA polymerase with the subunit composition of PB1-PB2-PA is a unique multifunctional enzyme with the activities of both synthesis and cleavage of RNA, and is involved in both transcription and replication of the RNA genome. Transcription is initiated by using capped RNA fragments, which are generated after cleavage of host cell mRNA by the RNA polymerase-associated capped RNA endonuclease . It would appear that two separate sequences, one N-(242-282) and the other C-terminal (538-577) proximal segments of PB2 subunit, constitute the RNA cap-binding site of the Influenza virus RNA polymerase .; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006350 transcription; PDB: 3cw4_A 2vy8_A 2vqz_F 2vy6_A 2vy7_A 2gmo_A 2jdq_E.
Probab=28.36 E-value=12 Score=13.78 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999874101124678776554532356662016889999999999999999999871012
Q T0534 8 YVAALILGLAFTTTSCSSDDDNPTVDPANIDYTPENASSWHNYMRNVAALLKTDATNLYNAWNS 71 (384)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~d~~~~~d~~~~d~t~~N~~rr~~YL~av~~lL~~dl~~l~~~W~~ 71 (384)
..-++++.|-|+.-.|---|-+..+++.+ -+-|+..|+...-.-+..+++.|.++|..
T Consensus 394 ~k~lii~cMvFsqd~~mfk~vrg~inf~n------ragq~l~pmyql~r~fqk~~~~Lf~~wG~ 451 (759)
T PF00604_consen 394 MKDLIIMCMVFSQDTRMFKDVRGEINFAN------RAGQELSPMYQLMRWFQKNSNDLFYQWGY 451 (759)
T ss_dssp HHHHHHHHHHHTT-HHHHTT-------B-------TTS-B--HHHHHHHHHHH--HHHHHH---
T ss_pred HHHHHHHEEEECCCCCEEECCCCCEEEEC------CCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99887553674457744432754246512------65666885999999998789999985494
No 13
>PF04222 DUF416: Protein of unknown function, DUF; InterPro: IPR007338 This is a bacterial family of uncharacterised proteins.; PDB: 3f7c_A 2q9r_A.
Probab=25.62 E-value=13 Score=13.44 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54689999999999999887534554024677331134899999886
Q T0534 211 SNETVAAMDACAELESILKNDLKSYIANNSNNINTDAVLNPVVTQYV 257 (384)
Q Consensus 211 ~~~~~~a~~a~~~l~~~l~~~~~~~~~q~~~~~~~~~~~~avv~n~a 257 (384)
.=-+..|+|||..|+..|..-+-+ ....-..++.+-..-|
T Consensus 59 ~yGvyPA~DAc~AL~~ll~~~l~~-------~~~~a~~iS~lS~~TV 98 (111)
T PF04222_consen 59 SYGVYPALDACVALSELLHAILDG-------DSEHAINISQLSLATV 98 (111)
T ss_dssp ----HHHHHHHHHHHHHHHHHH-T-------TCHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
T ss_conf 430279999999999999998867-------8889999999989999
No 14
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events .
Probab=21.76 E-value=15 Score=12.94 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999899999986167765444000899998418788999999999999999
Q T0534 144 SRDDYTNNIYSIRNAYYGSLDGNINANSLSTVIAGANSSLDTKIKNAIQKAAKAI 198 (384)
Q Consensus 144 S~~d~~~Ni~gI~NvY~G~y~g~~~g~Sl~dlV~~~d~~L~~~i~~~i~~a~~ai 198 (384)
+++.-..|++-||+..+ . =+-+..|+...+|.++.+|+.+--.++.+.
T Consensus 155 ~lr~p~tn~qiiQq~Ll-k------~k~l~~FL~~~~~~la~El~~aYi~TM~~~ 202 (511)
T PF04129_consen 155 ALRSPNTNIQIIQQSLL-K------YKPLYQFLKEHNPELATELRQAYINTMSWY 202 (511)
T ss_pred HHCCCCCCCHHHHHHHH-H------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 97089998089999999-6------599999999739999999999999999999
No 15
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic .; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription; PDB: 2fjr_A 3bd1_B.
Probab=20.85 E-value=11 Score=13.83 Aligned_cols=13 Identities=31% Similarity=0.467 Sum_probs=8.5
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 7777762048875
Q T0534 369 TLEFLLYKNGEPR 381 (384)
Q Consensus 369 AiEyLLf~dG~~r 381 (384)
-+++|++|.|.+|
T Consensus 54 sldWL~~G~G~~~ 66 (66)
T PF07022_consen 54 SLDWLLTGEGPMF 66 (66)
T ss_dssp -HHHHH-------
T ss_pred CHHHHHHCCCCCC
T ss_conf 9999973889999
No 16
>PF09432 THP2: Tho complex subunit THP2
Probab=20.47 E-value=16 Score=12.75 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9999899999986167765444000899998418
Q T0534 147 DYTNNIYSIRNAYYGSLDGNINANSLSTVIAGAN 180 (384)
Q Consensus 147 d~~~Ni~gI~NvY~G~y~g~~~g~Sl~dlV~~~d 180 (384)
.-+.+..+|++.-+|. +..|+..++..++
T Consensus 96 ~Wr~~W~~iE~lmFGD-----~p~Smk~mlq~ie 124 (132)
T PF09432_consen 96 YWRQNWESIEMLMFGD-----SPNSMKKMLQKIE 124 (132)
T ss_pred HHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH
T ss_conf 9999999888878369-----8278999999999
No 17
>PF02438 Adeno_100: Late 100kD protein; InterPro: IPR003381 The late 100 kDa protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus.; GO: 0019060 intracellular transport of viral proteins in host cell
Probab=20.19 E-value=15 Score=12.87 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999988753455402467733113489999988623325779
Q T0534 220 ACAELESILKNDLKSYIANNSNNINTDAVLNPVVTQYVDAVVVPTY 265 (384)
Q Consensus 220 a~~~l~~~l~~~~~~~~~q~~~~~~~~~~~~avv~n~aD~vI~P~Y 265 (384)
.+.+|.+.|.+....+.. ......|.+..+| +|.|.-
T Consensus 334 nl~~l~~~l~~~~~~l~~--------~~~~~~ia~~la~-iifp~~ 370 (583)
T PF02438_consen 334 NLKELRKLLTRNKRALWT--------LFSERTIAKDLAD-IIFPER 370 (583)
T ss_pred HHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHH-HHCCHH
T ss_conf 899999999975466632--------8777799999998-618889
Done!