Query         T0535 FGD5, Homo sapiens, 294 residues
Match_columns 294
No_of_seqs    122 out of 2258
Neff          9.9 
Searched_HMMs 22458
Date          Fri May 21 18:05:14 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0535.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0535.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ky9_A Proto-oncogene VAV; cal 100.0       0       0  337.9  29.1  283    2-294   196-505 (587)
  2 2vrw_B P95VAV, VAV1, proto-onc 100.0       0       0  331.0  33.7  282    2-294    24-333 (406)
  3 2pz1_A RHO guanine nucleotide  100.0       0       0  324.3  33.7  288    2-294   117-438 (466)
  4 2dfk_A Collybistin II; DH doma 100.0       0       0  317.9  34.1  288    2-294    40-361 (402)
  5 3ksy_A SOS-1, SON of sevenless 100.0       0       0  325.2  25.8  285    4-293   201-543 (1049)
  6 2z0q_A XPLN, RHO guanine nucle 100.0       0       0  320.6  27.6  286    2-294    18-344 (346)
  7 1xcg_A PDZ-rhogef, RHO guanine 100.0       0       0  301.2  33.6  288    2-294    20-364 (368)
  8 1txd_A RHO guanine nucleotide  100.0       0       0  298.8  32.3  287    2-294    23-367 (385)
  9 1dbh_A Protein (human SOS 1);  100.0       0       0  298.7  27.1  287    2-293     2-346 (354)
 10 1foe_A T-lymphoma invasion and 100.0 8.4E-45       0  290.4  31.4  287    2-294    10-364 (377)
 11 3jzy_A Intersectin 2; C2 domai 100.0       0       0  324.6   0.0  289    1-294    25-360 (510)
 12 2rgn_B RHOA/RAC/CDC42 exchange 100.0 2.8E-45       0  293.8  24.9  283    2-294    11-316 (354)
 13 1kz7_A Guanine nucleotide exch 100.0 1.3E-44       0  289.2  24.2  285    2-294    10-323 (353)
 14 1nty_A Triple functional domai 100.0 1.6E-41 1.4E-45  270.3  29.6  279    2-294     8-306 (311)
 15 3gf9_A Intersectin 2; structur 100.0 1.4E-35 6.4E-40  234.0  20.1  183    2-189    97-290 (295)
 16 1by1_A Protein (PIX); RHO-GTPa 100.0 1.1E-34 4.7E-39  228.7  14.7  180    1-188    11-198 (209)
 17 1zc3_B Exocyst complex protein  99.4 2.8E-12 1.2E-16   91.6   9.5   90  205-294     1-105 (113)
 18 1v61_A RAC/CDC42 guanine nucle  99.1 1.9E-10 8.3E-15   80.5   8.4   89  206-294    22-124 (132)
 19 1fho_A UNC-89; pleckstrin homo  99.1 4.4E-11   2E-15   84.3   5.2   91  203-294     2-110 (119)
 20 2q13_A DCC-interacting protein  98.0  0.0006 2.7E-08   40.7  20.5   81  212-294   278-373 (385)
 21 2dhk_A TBC1 domain family memb  97.6 0.00011 4.7E-09   45.3   6.7   71  224-294    25-102 (119)
 22 2cof_A Protein KIAA1914; PH do  97.6 0.00026 1.2E-08   42.9   7.9   81  214-294    10-99  (107)
 23 1dyn_A Dynamin; signal transdu  97.6 0.00046 2.1E-08   41.4   9.0   82  211-294    11-115 (125)
 24 1w1g_A HPDK1, 3-phosphoinositi  97.5 0.00075 3.3E-08   40.1   9.4   96  194-293    35-136 (151)
 25 2i5f_A Pleckstrin; PH domain,   97.5 0.00023   1E-08   43.2   6.6   85  210-294     5-107 (109)
 26 1btk_A Bruton'S tyrosine kinas  97.5 0.00085 3.8E-08   39.8   9.3   33  262-294    97-130 (169)
 27 2dkp_A Pleckstrin homology dom  97.4 0.00053 2.4E-08   41.0   7.9   85  208-294    17-117 (128)
 28 1wg7_A Dedicator of cytokinesi  97.4 0.00067   3E-08   40.4   8.2   87  207-294    13-122 (150)
 29 2coc_A FYVE, rhogef and PH dom  97.4 0.00028 1.2E-08   42.7   6.0   81  213-294     9-104 (112)
 30 2yry_A Pleckstrin homology dom  97.4 0.00056 2.5E-08   40.9   7.5   86  207-294    17-118 (122)
 31 2d9y_A Pleckstrin homology dom  97.4 0.00089   4E-08   39.6   8.4   83  211-294    10-107 (117)
 32 3feh_A Centaurin-alpha-1; stru  97.3 0.00086 3.8E-08   39.7   7.7   83  210-294   267-370 (386)
 33 1upq_A PEPP1; PH domain, phosp  97.3  0.0007 3.1E-08   40.3   6.9   86  207-294     6-107 (123)
 34 1u5f_A SRC-associated adaptor   97.3  0.0011 4.7E-08   39.2   7.8   83  210-294    15-117 (148)
 35 2da0_A 130-kDa phosphatidylino  97.2 0.00066   3E-08   40.4   6.7   68  224-294    26-99  (114)
 36 1eaz_A Tandem PH domain contai  97.2 0.00065 2.9E-08   40.5   6.5   85  208-294    10-109 (125)
 37 2cod_A Centaurin-delta 1; ARF   97.2  0.0008 3.6E-08   39.9   6.8   84  209-294     5-97  (115)
 38 1wgq_A FYVE, rhogef and PH dom  97.2  0.0013 5.8E-08   38.6   7.9   82  212-294     8-101 (109)
 39 1u5e_A SRC-associated adaptor   97.2 0.00081 3.6E-08   39.9   6.5   83  210-294   104-206 (211)
 40 1v89_A Hypothetical protein KI  97.2  0.0013 5.7E-08   38.7   7.4   81  212-294     8-110 (118)
 41 2dtc_A RAL guanine nucleotide   97.1  0.0027 1.2E-07   36.7   8.9   72  223-294    22-110 (126)
 42 2dn6_A KIAA0640 protein; PH do  97.1  0.0019 8.3E-08   37.7   8.0   82  211-294     7-101 (115)
 43 1pls_A Pleckstrin homology dom  97.1  0.0014 6.1E-08   38.5   7.3   81  212-294     5-99  (113)
 44 3cxb_B Pleckstrin homology dom  97.1  0.0015 6.9E-08   38.2   7.5   74  220-294    15-99  (112)
 45 3a8p_A T-lymphoma invasion and  97.1  0.0017 7.4E-08   38.0   7.5   73  222-294    36-122 (263)
 46 1v5p_A Pleckstrin homology dom  97.1   0.002 8.9E-08   37.5   7.9   71  223-294    30-118 (126)
 47 1x1g_A Pleckstrin 2; PH domain  97.1 0.00074 3.3E-08   40.1   5.4   89  206-294    12-122 (129)
 48 2d9v_A Pleckstrin homology dom  97.1  0.0024 1.1E-07   37.0   8.0   85  210-294     6-112 (130)
 49 1u5d_A SKAP55, SRC kinase-asso  97.1  0.0011 4.7E-08   39.2   6.2   69  224-294    22-103 (108)
 50 1x1f_A Signal-transducing adap  97.0  0.0018 7.9E-08   37.8   7.0   81  212-294    18-111 (149)
 51 2j59_M RHO-GTPase activating p  97.0  0.0028 1.2E-07   36.6   7.8   72  223-294    27-109 (168)
 52 1fao_A Dual adaptor of phospho  97.0  0.0025 1.1E-07   36.9   7.5   80  213-294    19-110 (126)
 53 2r09_A Cytohesin-3; autoinhibi  96.9  0.0019 8.3E-08   37.7   6.5   80  213-294   214-326 (347)
 54 2ys3_A UNC-112-related protein  96.9  0.0011 4.8E-08   39.1   5.1   72  223-294    26-110 (137)
 55 2d9x_A Oxysterol binding prote  96.9  0.0013   6E-08   38.6   5.3   83  212-294     8-102 (120)
 56 1v5u_A SBF1, SET binding facto  96.9  0.0056 2.5E-07   34.8   8.5   83  211-294     7-109 (117)
 57 2dhi_A Evectin-2, pleckstrin h  96.8  0.0032 1.4E-07   36.2   7.0   85  210-294     6-112 (120)
 58 1x05_A Pleckstrin; PH domain,   96.8   0.002 9.1E-08   37.4   6.0   85  210-294    16-118 (129)
 59 2w2x_D 1-phosphatidylinositol-  96.8  0.0026 1.2E-07   36.8   6.4   82  213-294    13-117 (124)
 60 2d9w_A Docking protein 2; PH d  96.8  0.0034 1.5E-07   36.1   6.9   83  212-294    12-119 (127)
 61 2kcj_A Pleckstrin homology dom  96.8  0.0012 5.5E-08   38.8   4.6   82  213-294     8-99  (108)
 62 1v88_A Oxysterol binding prote  96.8  0.0031 1.4E-07   36.3   6.6   81  212-294     8-122 (130)
 63 2p0d_A RHO GTPase-activating p  96.7  0.0045   2E-07   35.3   7.2   36  259-294    85-122 (129)
 64 1wi1_A Calcium-dependent activ  96.7  0.0058 2.6E-07   34.7   7.4   32  263-294    76-108 (126)
 65 1v5m_A SH2 and PH domain-conta  96.7  0.0019 8.3E-08   37.7   4.8   34  261-294    93-128 (136)
 66 1unq_A RAC-alpha serine/threon  96.6  0.0063 2.8E-07   34.4   7.4   84  210-294     6-108 (125)
 67 2coa_A Protein kinase C, D2 ty  96.6  0.0037 1.6E-07   35.9   5.9   82  211-294     7-117 (125)
 68 1btn_A Beta-spectrin; signal t  96.6   0.016 6.9E-07   32.1   9.0   73  222-294    20-106 (106)
 69 1qqg_A IRS-1, insulin receptor  96.4    0.01 4.5E-07   33.2   7.4   35  260-294    75-110 (264)
 70 1wjm_A Beta-spectrin III; PH d  96.4  0.0061 2.7E-07   34.5   5.9   72  223-294    30-115 (123)
 71 3a8n_A TIAM-1, T-lymphoma inva  96.3   0.003 1.3E-07   36.4   4.1   73  222-294    36-122 (279)
 72 2rov_A RHO-associated protein   96.3  0.0042 1.9E-07   35.5   4.6   34  261-294    73-113 (117)
 73 1fgy_A GRP1; PH domain, signal  96.2   0.018   8E-07   31.7   7.5   25  270-294    94-118 (127)
 74 2d9z_A Protein kinase C, NU ty  96.0   0.015 6.5E-07   32.2   6.5   82  211-294     7-121 (129)
 75 2rlo_A Centaurin-gamma 1; spli  95.4   0.018   8E-07   31.7   4.8   33  262-294    88-122 (128)
 76 1dro_A Beta-spectrin; cytoskel  94.9   0.027 1.2E-06   30.6   4.6   73  222-294    29-117 (122)
 77 2adz_A Alpha-1-syntrophin; pro  87.2    0.86 3.8E-05   21.4   5.0   35  259-293   137-174 (178)
 78 1mai_A Phospholipase C delta-1  83.5     1.5 6.9E-05   19.8   6.5   32  261-292    83-117 (131)
 79 3hie_A Protein PSL1, exocyst c  60.9     5.7 0.00025   16.4   8.2   55  239-293    86-145 (171)
 80 2fjl_A 1-phosphatidylinositol-  54.6     7.2 0.00032   15.7   4.0   32  263-294   111-146 (150)
 81 3f1i_H Hepatocyte growth facto  38.0      13 0.00059   14.1   5.7   53   16-71      3-56  (98)
 82 3a58_A Exocyst complex compone  24.0      23   0.001   12.7   8.0   53  241-293   158-215 (320)

No 1  
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckstrin homology domain, C1 domain, acetylation; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=100.00  E-value=0  Score=337.91  Aligned_cols=283  Identities=16%  Similarity=0.225  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             068999999999999999768999-9999998731024566789889988712888999998999999998862478750
Q T0535             2 SRALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ   80 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~   80 (294)
                      .||.+||+||++||++||+.|.++ ..|+.||..       +++++++..||+||++|+.+|+.|+.+|+++...|.. .
T Consensus       196 ~kR~~vi~Ell~TE~~YV~~L~~l~~~y~~pL~~-------~l~~~~i~~IF~ni~eI~~~h~~fL~~Le~~~~~~~~-~  267 (587)
T 3ky9_A          196 DKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPGA-A  267 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT-------TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf             9999999999999999999999999999999871-------0999999999748999999999999999998769862-6


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             18999999875557-88998600789999999985009999999998------627802567788876447789999986
Q T0535            81 KVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREF------EQSTAKHRLLRVVQRLFQYQVLLTDYL  153 (294)
Q Consensus        81 ~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~------~~~~l~~~L~~PiQRl~kY~lLl~~ll  153 (294)
                      .+|++|+.+.++|. |..||.|++.+...+.++.+.++.|..++.++      .+++|.++|++|+||++||+|||++|+
T Consensus       268 ~ig~~Fl~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRl~rY~LLL~eLl  347 (587)
T 3ky9_A          268 NLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV  347 (587)
T ss_dssp             SHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29999999888889999999819999999999987468899999999658325787889999888877889999999999


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCC----CCCCEE
Q ss_conf             427898836799999999999999999888876-678999999862044210002144543346431234----542002
Q T0535           154 NNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLKVTG----KNRRPR  228 (294)
Q Consensus       154 k~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~~~l~~~~r~~i~~g~~~~~~----~~~~~~  228 (294)
                      |+|| +|||+..|+.|++.++.++..+|+.++. ++..++.+++..+.+++..+...++++++|.+.+..    +...++
T Consensus       348 K~Tp-d~~D~~~L~~Al~~ik~v~~~iNe~~r~~E~~~~l~~l~~~i~~~~~~l~~~grll~~G~~~v~~~~~~~~~~r~  426 (587)
T 3ky9_A          348 KHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDRY  426 (587)
T ss_dssp             HTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCCSCGGGGCCEEEEEEEEEECSSCCSCEEEE
T ss_pred             HHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEE
T ss_conf             6099-753689999999999999999999998778999999999863366443256871799811367631689843689


Q ss_pred             EEEECCEEEEEEEECCCEEEEEEEEEECCC-----------CCCCCCEEEEEEC---CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             565155379998614872787556641225-----------5667601788708---38999818989999999999719
Q T0535           229 HLFLNDVLLYTYPQKDGKYRLKNTLAVSRP-----------VEKVPYALKIETS---ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       229 ~fLf~D~li~~k~~~~~~~~~~~~i~l~~~-----------~~~~~~~f~i~~~---~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +|||+|+||+|+++ ++.|.++..+++...           ....++.|.+...   ++|+|+|.|.++|+.|+++|++|
T Consensus       427 ~fLF~d~Ll~~K~k-~~~~~~k~~i~L~~~~v~~~~~~~~d~~~~~~~f~i~~~~~~~sf~l~a~s~eek~~W~~~i~~a  505 (587)
T 3ky9_A          427 AFLLDKALLICKRR-GDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMA  505 (587)
T ss_dssp             EEEETTEEEEEEEE-TTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEC-CCCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             99508889999853-88530013888363478866766666766670599997799948999979999999999999999


No 2  
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=100.00  E-value=0  Score=331.02  Aligned_cols=282  Identities=17%  Similarity=0.266  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             0689999999999999997689999-999998731024566789889988712888999998999999998862478750
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNL-DFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ   80 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~-~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~   80 (294)
                      +||.+||+||++||++||+.|.++. .|+.|+.       .++++++++.||+|+++|+.+|+.|+.+|+++..+|. ..
T Consensus        24 ~kR~~vi~Eli~TE~~Yv~~L~~l~~~f~~~l~-------~~~~~~~~~~iF~ni~~i~~~h~~~l~~L~~~~~~~~-~~   95 (406)
T 2vrw_B           24 DKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQ-------RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGPG-AT   95 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT-------TTSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSGG-GT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf             999999999999999999999999999999998-------5199999999974899999999999999999870896-13


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             18999999875557-889986007899999999850099999999986------27802567788876447789999986
Q T0535            81 KVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQVLLTDYL  153 (294)
Q Consensus        81 ~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~lLl~~ll  153 (294)
                      .+|++|+.+.++|. |..||.++..+...+.++.+.++.|..++++++      +++|.++|++|+||++||+|||++|+
T Consensus        96 ~i~~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~PvQRl~rY~LLL~~ll  175 (406)
T 2vrw_B           96 TLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV  175 (406)
T ss_dssp             THHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29999999988889999999805999999999986268899999998705103788879999998877879999999997


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCH-HCCCCCCCCCCCCCCCC---CCC-CCE
Q ss_conf             427898836799999999999999999888876-678999999862044210-00214454334643123---454-200
Q T0535           154 NNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQGD-LLQPGREFLKEGTLKVT---GKN-RRP  227 (294)
Q Consensus       154 k~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~~~-l~~~~r~~i~~g~~~~~---~~~-~~~  227 (294)
                      |+|| +|||+.+++.|++.++.++..+|+..+. ++..++.+++..+.+.+. +..++| ++.+|.+.+.   +++ ..+
T Consensus       176 k~T~-~~~d~~~l~~a~~~i~~v~~~vne~~~~~e~~~~l~~i~~~i~~~~~~l~~~~r-~~~~g~~~~~~~~~k~~~~r  253 (406)
T 2vrw_B          176 KHTQ-DATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGR-PKIDGELKITSVERRSKTDR  253 (406)
T ss_dssp             HHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCSSCGGGGCS-EEEEEEEEEECSSCCSCEEE
T ss_pred             HCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCEE
T ss_conf             2599-813189999999999999999989999988999999999863267533333566-43223201220257987336


Q ss_pred             EEEEECCEEEEEEEECCCEEEEEEEEEECC-----------CCCCCCCEEEEEE---CCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             256515537999861487278755664122-----------5566760178870---83899981898999999999971
Q T0535           228 RHLFLNDVLLYTYPQKDGKYRLKNTLAVSR-----------PVEKVPYALKIET---SESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       228 ~~fLf~D~li~~k~~~~~~~~~~~~i~l~~-----------~~~~~~~~f~i~~---~~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      ++|||||+||+|+++ ++.|.++..+++..           +....++.|.+..   .++++|+|.|+++|+.|+++|++
T Consensus       254 ~~fLFnD~Ll~~k~~-~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~sf~l~a~s~eek~~W~~~i~~  332 (406)
T 2vrw_B          254 YAFLLDKALLICKRR-GDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEM  332 (406)
T ss_dssp             EEEEESSEEEEEEEE-TTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEC-CCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf             899846879999721-7753000378733268896366666776564699999779980799993899999999999999


Q ss_pred             C
Q ss_conf             9
Q T0535           294 A  294 (294)
Q Consensus       294 A  294 (294)
                      |
T Consensus       333 a  333 (406)
T 2vrw_B          333 A  333 (406)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 3  
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protein; 2.25A {Homo sapiens} PDB: 2dx1_A
Probab=100.00  E-value=0  Score=324.26  Aligned_cols=288  Identities=18%  Similarity=0.299  Sum_probs=241.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf             0689999999999999997689-99999999873102456678988998871288899999899999999886247875-
Q T0535             2 SRALVIAQELLSSEKAYVELQH-LNLDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQ-   79 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~-l~~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~-   79 (294)
                      ++|-.||+||++||++||++|. ++..|+.|+...    .++++.+++..||+|+++|+.+|+.|+..|+.+...+... 
T Consensus       117 ~~R~~vI~ELi~TE~~Yv~~L~~l~~~y~~pl~~~----~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~  192 (466)
T 2pz1_A          117 QMRTNVINEILSTERDYIKHLRDICEGYVRQCRKR----ADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHL  192 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999999999999855878744----57999899999971699999999999999999984279743


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             018999999875557-889986007899999999850099999999986------2780256778887644778999998
Q T0535            80 QKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQVLLTDY  152 (294)
Q Consensus        80 ~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~lLl~~l  152 (294)
                      ..||++|+.+.++|. |..||.+++.+...+.++.+ ++.|..++..++      .+++.++|++|+||++||++||++|
T Consensus       193 ~~Ig~~fl~~~~~f~~Y~~Y~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~L~s~L~~PvQRi~kY~lLL~eL  271 (466)
T 2pz1_A          193 SELGACFLEHQADFQIYSEYCNNHPNACVELSRLTK-LSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAEL  271 (466)
T ss_dssp             CCCHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             279999998677779999999807999999999974-0578999999873610145787999867764455679999999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC--CHHCCCCCCCCCCCCCCCCCC----CC
Q ss_conf             6427898836799999999999999999888876-6789999998620442--100021445433464312345----42
Q T0535           153 LNNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQ--GDLLQPGREFLKEGTLKVTGK----NR  225 (294)
Q Consensus       153 lk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~--~~l~~~~r~~i~~g~~~~~~~----~~  225 (294)
                      +++||++|||+..++.|+..++.++..||+.++. ++..++.+++..+.++  ..++..+|.++++|.+.....    +.
T Consensus       272 lk~T~~~h~d~~~l~~Al~~~~~v~~~ine~~r~~e~~~~l~~l~~~i~~~~~~~l~~~~r~li~~g~l~~~~~~~~k~~  351 (466)
T 2pz1_A          272 LKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQ  351 (466)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEEEEEEEEEECTTTCCEE
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf             97448898329999999999999999999999999819999999975125656410035761110142799823678762


Q ss_pred             CEEEEEECCEEEEEEEEC--CCEEEEEEEEEECCCC-------------CCCCCEEEEEE---CCEEEEEECCHHHHHHH
Q ss_conf             002565155379998614--8727875566412255-------------66760178870---83899981898999999
Q T0535           226 RPRHLFLNDVLLYTYPQK--DGKYRLKNTLAVSRPV-------------EKVPYALKIET---SESCLLSASSCAERDEW  287 (294)
Q Consensus       226 ~~~~fLf~D~li~~k~~~--~~~~~~~~~i~l~~~~-------------~~~~~~f~i~~---~~~~~l~a~s~~ek~~W  287 (294)
                      .+.+|||+|+||+|++..  ...+.++..+++....             ...+++|.|..   .+.++|+|.|.++|+.|
T Consensus       352 ~r~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~l~v~~~~d~~~~~~~~~~~~~f~i~~~~~~~~~~l~a~s~eek~~W  431 (466)
T 2pz1_A          352 QRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRW  431 (466)
T ss_dssp             EEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHH
T ss_pred             EEEEEEECCEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHH
T ss_conf             38999833606899711578861799999874760899898987554333355138999789996899998999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999719
Q T0535           288 YGCLSRA  294 (294)
Q Consensus       288 ~~~i~~A  294 (294)
                      +++|++|
T Consensus       432 ~~~i~~~  438 (466)
T 2pz1_A          432 LKAFARE  438 (466)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 4  
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00  E-value=0  Score=317.90  Aligned_cols=288  Identities=18%  Similarity=0.276  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC-C
Q ss_conf             068999999999999999768999-99999987310245667898899887128889999989999999988624787-5
Q T0535             2 SRALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWES-Q   79 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~-~   79 (294)
                      ++|..||+||++||++||++|.++ ..|+.|+...    .++++.++++.||+||++|+++|+.|+..|+.+..+++. .
T Consensus        40 ~~R~~vi~Ell~TE~~Yv~~L~~l~~~f~~~l~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~  115 (402)
T 2dfk_A           40 QMRANVINEIMSTERHYIKHLKDICEGYLKQCRKR----RDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHL  115 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99999999999999999999999999999999866----79999999999984899999999999999999872799605


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             018999999875557-889986007899999999850099999999986------2780256778887644778999998
Q T0535            80 QKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQVLLTDY  152 (294)
Q Consensus        80 ~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~lLl~~l  152 (294)
                      ..||++|+.+.+.|. |..||.+++.+...+.++. +++.|..|++.++      +.++.++|++|+||++||++||++|
T Consensus       116 ~~ig~~f~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~f~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lLL~~l  194 (402)
T 2dfk_A          116 SEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLM-KDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAEL  194 (402)
T ss_dssp             CCCHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             38999999976778898998807720899999985-35688999999873811146885899999999999869999999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC--CHHCCCCCCCCCCCCCCCCC----CCC
Q ss_conf             6427898836799999999999999999888876-6789999998620442--10002144543346431234----542
Q T0535           153 LNNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQ--GDLLQPGREFLKEGTLKVTG----KNR  225 (294)
Q Consensus       153 lk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~--~~l~~~~r~~i~~g~~~~~~----~~~  225 (294)
                      +++||++|||+..+..|++.++.++..+|+..+. +...++.+++..+.+.  ..++.++|.++++|.+....    ++.
T Consensus       195 ~k~t~~~~~d~~~L~~a~~~i~~~~~~in~~~~~~e~~~~l~~l~~~i~~~~~~~l~~~~r~~i~~g~l~~~~~~~~~~~  274 (402)
T 2dfk_A          195 LKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQ  274 (402)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEEEEEEEEEESSTTCCCE
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCC
T ss_conf             71068886249999999999999999999999998855459999975103555420024540000143035413677774


Q ss_pred             CEEEEEECCEEEEEEEEC--CCEEEEEEEEEECCCC-------------CCCCCEEEEEEC---CEEEEEECCHHHHHHH
Q ss_conf             002565155379998614--8727875566412255-------------667601788708---3899981898999999
Q T0535           226 RPRHLFLNDVLLYTYPQK--DGKYRLKNTLAVSRPV-------------EKVPYALKIETS---ESCLLSASSCAERDEW  287 (294)
Q Consensus       226 ~~~~fLf~D~li~~k~~~--~~~~~~~~~i~l~~~~-------------~~~~~~f~i~~~---~~~~l~a~s~~ek~~W  287 (294)
                      .+++|||+|+||+|+++.  .+.+.++..+++....             ...+++|.|...   +.++++|.|.+||+.|
T Consensus       275 ~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~l~a~s~~ek~~W  354 (402)
T 2dfk_A          275 QRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRW  354 (402)
T ss_dssp             EEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHH
T ss_pred             EEEEEEECCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCHHHHHHH
T ss_conf             02566633537889735667763488778755654899930788654454457635998679985999994999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999719
Q T0535           288 YGCLSRA  294 (294)
Q Consensus       288 ~~~i~~A  294 (294)
                      +++|++|
T Consensus       355 ~~~i~~~  361 (402)
T 2dfk_A          355 LRAFREE  361 (402)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 5  
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00  E-value=0  Score=325.21  Aligned_cols=285  Identities=17%  Similarity=0.214  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC---C
Q ss_conf             8999999999999999768999-99999987310245667898899887128889999989999999988624787---5
Q T0535             4 ALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWES---Q   79 (294)
Q Consensus         4 ~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~---~   79 (294)
                      ..-||+||++||++||++|.++ +.|+.|+...    .++++.++++.||+||++|+.+|+.|+..|+++++.|+.   .
T Consensus       201 y~eVV~ELi~TE~~YV~~L~~li~~F~~pL~~~----~~ils~~~i~~IF~NIe~I~~lh~~fL~~Le~~~e~~~~~~~~  276 (1049)
T 3ksy_A          201 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSN----SKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPH  276 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHC----TTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999999999999999999999999999757----7999999999997589999999999999999998562458874


Q ss_pred             CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             01899999987555---788998600789999999985--0099999999------986278025677888764477899
Q T0535            80 QKVADVFLAREQGF---DHHAHILQFDRYLGLLSENCL--HSPRLAAAVR------EFEQSTAKHRLLRVVQRLFQYQVL  148 (294)
Q Consensus        80 ~~i~~~f~~~~~~~---~y~~y~~~~~~~~~~l~~~~~--~~~~f~~~~~------~~~~~~l~~~L~~PiQRl~kY~lL  148 (294)
                      +.+|+||.++.+.+   .|..||.|+..+...+..+.+  +...+..+..      .+.+.+|.+||++||||++||++|
T Consensus       277 ~~IGdiF~~l~~~l~F~vY~~Yc~n~~~a~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~l~L~s~Li~PvQRi~RY~LL  356 (1049)
T 3ksy_A          277 PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFEL  356 (1049)
T ss_dssp             CCCHHHHHHHHHTTTTSHHHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             74999999876663460379999687989999999999731378899999986251013788689874689988889999


Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHCCC--C
Q ss_conf             999864278988367999999999999999998888766-----------------------789999998620442--1
Q T0535           149 LTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQGE-----------------------NLQKLVHIEHSVRGQ--G  203 (294)
Q Consensus       149 l~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~-----------------------~~~~~~~~~~~~~~~--~  203 (294)
                      |++|+++|| +|+|+..+++|+..++++...+|+..+..                       ...++.+++..+.++  .
T Consensus       357 Lk~Llk~Tp-~h~D~~~L~~Al~~ik~l~~~ine~~~~~~~~~r~~e~~~~~~~~~~~~k~~~i~~l~eiq~~i~g~~~~  435 (1049)
T 3ksy_A          357 LKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGK  435 (1049)
T ss_dssp             HHHHHHSCC-CHHHHHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------CCSHHHHHHHTSSSCCSS
T ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999997498-9605899999999999999999999999999988888876530012233367899999999743488766


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECC---------CEEEEEEEEEECC-------CCCCCCCEEE
Q ss_conf             00021445433464312345420025651553799986148---------7278755664122-------5566760178
Q T0535           204 DLLQPGREFLKEGTLKVTGKNRRPRHLFLNDVLLYTYPQKD---------GKYRLKNTLAVSR-------PVEKVPYALK  267 (294)
Q Consensus       204 ~l~~~~r~~i~~g~~~~~~~~~~~~~fLf~D~li~~k~~~~---------~~~~~~~~i~l~~-------~~~~~~~~f~  267 (294)
                      ++..++|.++++|.+...++++.+++|||+|+||+||++..         ..|.+++.+++.+       +.++.+|+|.
T Consensus       436 ~l~~~~r~fi~eG~L~k~~~~keR~~FLFnd~Lli~K~~~~~~~~~~~~~~~y~~K~~i~L~~~~I~d~~D~~~~knaF~  515 (1049)
T 3ksy_A          436 DIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFE  515 (1049)
T ss_dssp             CGGGTCSCCCCEEEEEETTCSSCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEE
T ss_pred             CCCCCCCEEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCEEEE
T ss_conf             54467865899857898068816999831574788623444555456778614787677636767886899766751589


Q ss_pred             EEE--CCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             870--83899981898999999999971
Q T0535           268 IET--SESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       268 i~~--~~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      +.+  +.+++|+|.|.+||+.||++|.+
T Consensus       516 i~~~~~~~~~f~A~S~eEK~~Wms~L~~  543 (1049)
T 3ksy_A          516 IILKDENSVIFSAKSAEEKNNWMAALIS  543 (1049)
T ss_dssp             ECCTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred             EECCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             9648987699982988999999999987


No 6  
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=100.00  E-value=0  Score=320.60  Aligned_cols=286  Identities=17%  Similarity=0.235  Sum_probs=236.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             06899999999999999976899999-99998731024566789889988712888999998999999998862478750
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNLD-FHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ   80 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~~-~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~   80 (294)
                      .||..||+||++||++||++|.++.+ |+.|+...     ++++++++..||+|+++|+.+|+.|+..|+++...|....
T Consensus        18 ~kR~~~i~Eli~tE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h~~~l~~L~~~~~~~~~~~   92 (346)
T 2z0q_A           18 IKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKL-----SIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTE   92 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999999999999999999999999999767-----9999999999986699999999999999999986059932


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             18999999875557-88998600789999999985009999999998------627802567788876447789999986
Q T0535            81 KVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREF------EQSTAKHRLLRVVQRLFQYQVLLTDYL  153 (294)
Q Consensus        81 ~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~------~~~~l~~~L~~PiQRl~kY~lLl~~ll  153 (294)
                      .+|++|..+.++|. |..||.||+.+...+..+. +++.|..+++++      .++++.++|++|+||++||++||++++
T Consensus        93 ~ig~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~l~~~~~~~~~~~~~l~~~L~~PvqRl~rY~llL~~ll  171 (346)
T 2z0q_A           93 HVGPILVGWLPCLSSYDSYCSNQVAAKALLDHKK-QDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREIL  171 (346)
T ss_dssp             CCHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHT-TCHHHHCC-------------CTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4899999874440589999837377899999875-226899999999819533578889999889999998999999997


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC-CCHHCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             427898836799999999999999999888876678-999999862044-210002144543346431234542002565
Q T0535           154 NNLCPDSAEYDNTQGALSLISKVTDRANDSEQGENL-QKLVHIEHSVRG-QGDLLQPGREFLKEGTLKVTGKNRRPRHLF  231 (294)
Q Consensus       154 k~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~r~~i~~g~~~~~~~~~~~~~fL  231 (294)
                      ++||++|||+..+++|++.+++++..||+..+..+. .....+.....+ ...+..++|.++++|.++. +++..+++||
T Consensus       172 k~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~R~li~~G~l~~-~~~~~~~~fL  250 (346)
T 2z0q_A          172 RHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKN-NRGVKLHVFL  250 (346)
T ss_dssp             HTSCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCCCHHHHTCCCEEEEEEEEE-TTSCEEEEEE
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEEC-CCCCEEEEEE
T ss_conf             048999858999999999999999987676689999999999887774132000356512677531651-7982579996


Q ss_pred             ECCEEEEEEEECCC---E-EEEEEEEEECCCC----------------------CCCCCEEEEEE-----CCEEEEEECC
Q ss_conf             15537999861487---2-7875566412255----------------------66760178870-----8389998189
Q T0535           232 LNDVLLYTYPQKDG---K-YRLKNTLAVSRPV----------------------EKVPYALKIET-----SESCLLSASS  280 (294)
Q Consensus       232 f~D~li~~k~~~~~---~-~~~~~~i~l~~~~----------------------~~~~~~f~i~~-----~~~~~l~a~s  280 (294)
                      |+|+||+|+++..+   . +.++..+|+....                      ...+++|.+..     ..+++|+|.|
T Consensus       251 F~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~a~s  330 (346)
T 2z0q_A          251 FQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQAND  330 (346)
T ss_dssp             ESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGGGCEEEEEECSS
T ss_pred             CCCEEEEEEEECCCCCCEEEEEECCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf             38769999970478762158874221456448998777754335310121236766570489999739997799999699


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             89999999999719
Q T0535           281 CAERDEWYGCLSRA  294 (294)
Q Consensus       281 ~~ek~~W~~~i~~A  294 (294)
                      .+||+.|+++|++|
T Consensus       331 ~~ek~~W~~~i~~a  344 (346)
T 2z0q_A          331 TFNKQQWLNCIRQA  344 (346)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999996


No 7  
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
Probab=100.00  E-value=0  Score=301.21  Aligned_cols=288  Identities=19%  Similarity=0.229  Sum_probs=231.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             0689999999999999997689999-999998731024566789889988712888999998999999998862478750
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNL-DFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ   80 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~-~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~   80 (294)
                      .||..||+||++||++||++|.++. .|+.|+...     ++++++++..||+|+++|+.+|+.|+..|++..+.|....
T Consensus        20 ~kRq~vi~Eli~tE~~yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~~~~~   94 (368)
T 1xcg_A           20 IDRQEVINELFVTEASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIK   94 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999999999999999998756-----8999999999961899999999999999999985688765


Q ss_pred             HHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHH
Q ss_conf             18999999875------557-889986007899999999850099999999986------27802567788876447789
Q T0535            81 KVADVFLAREQ------GFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQV  147 (294)
Q Consensus        81 ~i~~~f~~~~~------~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~l  147 (294)
                      .+|++|+.+..      ++. |..||.++..+...+.+..+.++.|..+++.++      ++++.++|++|+||++||++
T Consensus        95 ~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~s~L~~P~QRi~rY~l  174 (368)
T 1xcg_A           95 EISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPL  174 (368)
T ss_dssp             CCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             38999998511666899999999999849989999999840468899999997504001578889999999988877208


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-------------CHHCCCCCCCC
Q ss_conf             999986427898836799999999999999999888876-6789999998620442-------------10002144543
Q T0535           148 LLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQ-------------GDLLQPGREFL  213 (294)
Q Consensus       148 Ll~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~-------------~~l~~~~r~~i  213 (294)
                      ||++++++||++|||+..+..|++.++.++..+|+..+. ++..++.++.......             ......++.++
T Consensus       175 lL~~llk~t~~~~~d~~~l~~a~~~~~~v~~~vn~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  254 (368)
T 1xcg_A          175 LLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMI  254 (368)
T ss_dssp             HHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGGGGCCGGGSCEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHCCCCCCCEEEE
T ss_conf             99999853699955888899899999999999999999999999999999711434300102220022214344650699


Q ss_pred             CCCCCCCC---CCCCCEEEEEECCEEEEEEEECCCE----------------EEEEEEEEEC----CCCCCCCCEEEEEE
Q ss_conf             34643123---4542002565155379998614872----------------7875566412----25566760178870
Q T0535           214 KEGTLKVT---GKNRRPRHLFLNDVLLYTYPQKDGK----------------YRLKNTLAVS----RPVEKVPYALKIET  270 (294)
Q Consensus       214 ~~g~~~~~---~~~~~~~~fLf~D~li~~k~~~~~~----------------~~~~~~i~l~----~~~~~~~~~f~i~~  270 (294)
                      ++|.+...   ++...+++|||+|+|++|+++..+.                +..+..+.+.    .+..+.+++|.+..
T Consensus       255 ~~g~l~~~~~~~~~~~~~~fLf~d~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~  334 (368)
T 1xcg_A          255 HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIIC  334 (368)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSCSSEEEEEE
T ss_pred             EECCEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEECCCCCCCEEEEEE
T ss_conf             95662454137983479999818869999860576652124555544455310005705612135755789998389998


Q ss_pred             ------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             ------838999818989999999999719
Q T0535           271 ------SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 ------~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                            .++++|+|.|.+||+.|+++|.+|
T Consensus       335 ~~~~~~~~~~~l~a~s~~ek~~W~~~i~~a  364 (368)
T 1xcg_A          335 TSKLGPPQIYELVALTSSDKNTWMELLEEA  364 (368)
T ss_dssp             CCSSSTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             527999769999959999999999999999


No 8  
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=100.00  E-value=0  Score=298.77  Aligned_cols=287  Identities=20%  Similarity=0.212  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf             0689999999999999997689999-9999987310245667898899887128889999989999999988624787--
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNL-DFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWES--   78 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~-~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~--   78 (294)
                      .||-.||.||++||++||++|.++. .|+.|+...     ++++++++..||+|+++|+++|+.|+..|+.+...++.  
T Consensus        23 ~kR~~vi~ELi~tE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~~~~~   97 (385)
T 1txd_A           23 IKRQEVINELFYTERAHVRTLKVLDQVFYQRVSRE-----GILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSV   97 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----TCSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999999999999999988756-----9999999999971799999999999999999985557885


Q ss_pred             CCHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
Q ss_conf             5018999999875------55-78899860078999999998500999999999862------78025677888764477
Q T0535            79 QQKVADVFLAREQ------GF-DHHAHILQFDRYLGLLSENCLHSPRLAAAVREFEQ------STAKHRLLRVVQRLFQY  145 (294)
Q Consensus        79 ~~~i~~~f~~~~~------~~-~y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~------~~l~~~L~~PiQRl~kY  145 (294)
                      ...+|++|..++.      ++ .|..||.+++.+...+.++.+.++.|..|++.++.      +++.+||++|+||++||
T Consensus        98 ~~~i~~~~~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~f~~~~~~~~~~~~l~l~~~L~~PvqRi~rY  177 (385)
T 1txd_A           98 IDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKY  177 (385)
T ss_dssp             CCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCCHHHHTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             22399999998655418999988999997178899999999821888889999985132006787899986588888778


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-------------HHCCCCCC
Q ss_conf             89999986427898836799999999999999999888876-67899999986204421-------------00021445
Q T0535           146 QVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQG-------------DLLQPGRE  211 (294)
Q Consensus       146 ~lLl~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~~-------------~l~~~~r~  211 (294)
                      +|||++|+++|+ +|||+..++.|++.++.++..||+..+. ++..++.+++..+.+.+             .+..++|.
T Consensus       178 ~LLL~~llk~t~-~~~d~~~l~~a~~~i~~v~~~ine~~~~~e~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~R~  256 (385)
T 1txd_A          178 PLLLDNIAKYTE-WPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRK  256 (385)
T ss_dssp             HHHHHHHHHTCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC-------CHHHHTCCGGGSC
T ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCE
T ss_conf             999987863599-9746889998799999999999999999999999999999840454320014531443144456651


Q ss_pred             CCCCCCCCCCCC---CCCEEEEEECCEEEEEEEECCC----------------EEEEEEEEEECC-----CCCCCCCEEE
Q ss_conf             433464312345---4200256515537999861487----------------278755664122-----5566760178
Q T0535           212 FLKEGTLKVTGK---NRRPRHLFLNDVLLYTYPQKDG----------------KYRLKNTLAVSR-----PVEKVPYALK  267 (294)
Q Consensus       212 ~i~~g~~~~~~~---~~~~~~fLf~D~li~~k~~~~~----------------~~~~~~~i~l~~-----~~~~~~~~f~  267 (294)
                      ++++|.+...++   ...+++|||+|++++|+++...                ++.++..+++..     ...+.+..|.
T Consensus       257 ll~~G~l~~~~~~~k~~~~~~fLF~d~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~f~  336 (385)
T 1txd_A          257 MIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDNKALFV  336 (385)
T ss_dssp             EEEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-CCEEEE
T ss_pred             EEEECCEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCEECCCCCCCCCCCCCEEECCCEECCCEEEEECCCCCCCEEE
T ss_conf             89953637761689735799995079799999846755210232112466666310058166232367745889885799


Q ss_pred             EEEC----CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             8708----38999818989999999999719
Q T0535           268 IETS----ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       268 i~~~----~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +...    ..|+|+|.|.+||+.|+++|++|
T Consensus       337 i~~~~~~~~~~~l~a~s~~ek~~W~~~I~~~  367 (385)
T 1txd_A          337 ISMSDNGAQIYELVAQTVSEKTVWQDLICRM  367 (385)
T ss_dssp             EEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             9994699718999979999999999999999


No 9  
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00  E-value=0  Score=298.74  Aligned_cols=287  Identities=17%  Similarity=0.231  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             06899999999999999976899999-99998731024566789889988712888999998999999998862478---
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNLD-FHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWE---   77 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~~-~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~---   77 (294)
                      |+++.||+||++||++||++|.++.+ |+.|+...    .+++++++++.||+|+++|+++|+.|+..|+.+...|+   
T Consensus         2 ~~~~~ii~Eli~tE~~Yv~~L~~l~~~y~~pL~~~----~~~l~~~~~~~lF~ni~~i~~~h~~fl~~L~~~~~~~~~~~   77 (354)
T 1dbh_A            2 QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSN----SKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGS   77 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             30999999999999999999999999999999767----79999999999974999999999999999999983625687


Q ss_pred             CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             7501899999987555---7889986007899999999850---0999999-----999862780256778887644778
Q T0535            78 SQQKVADVFLAREQGF---DHHAHILQFDRYLGLLSENCLH---SPRLAAA-----VREFEQSTAKHRLLRVVQRLFQYQ  146 (294)
Q Consensus        78 ~~~~i~~~f~~~~~~~---~y~~y~~~~~~~~~~l~~~~~~---~~~f~~~-----~~~~~~~~l~~~L~~PiQRl~kY~  146 (294)
                      ....+|++|..+.+.+   .|..||.|++.+...+..+.+.   ...+...     ...+.++++.++|++|+||++||+
T Consensus        78 ~~~~i~~~f~~~~~~~~~~~Y~~Y~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~  157 (354)
T 1dbh_A           78 PHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYF  157 (354)
T ss_dssp             SSCCCHHHHHHHHHTTTTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             53559999997616631518999996699999999999985664889999999872632346786899867999998899


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----------------------HHHHHCC--
Q ss_conf             999998642789883679999999999999999988887667-899999----------------------9862044--
Q T0535           147 VLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQGEN-LQKLVH----------------------IEHSVRG--  201 (294)
Q Consensus       147 lLl~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~-~~~~~~----------------------~~~~~~~--  201 (294)
                      |||++|+++|| +|||+..+++|++.++.+...+|+..+..+ ..++.+                      ++..+.+  
T Consensus       158 LLL~~L~k~t~-~~~d~~~l~~al~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (354)
T 1dbh_A          158 ELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWE  236 (354)
T ss_dssp             HHHHHHHHHCS-CHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTEESCC
T ss_pred             HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999971369-97469999999999999999999999989999999999987763123321113999999998622567


Q ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEC---------CCEEEEEEEEEECCC-------CCCCCCE
Q ss_conf             210002144543346431234542002565155379998614---------872787556641225-------5667601
Q T0535           202 QGDLLQPGREFLKEGTLKVTGKNRRPRHLFLNDVLLYTYPQK---------DGKYRLKNTLAVSRP-------VEKVPYA  265 (294)
Q Consensus       202 ~~~l~~~~r~~i~~g~~~~~~~~~~~~~fLf~D~li~~k~~~---------~~~~~~~~~i~l~~~-------~~~~~~~  265 (294)
                      ...+..++|.+++.|.+....++..+++|||+|++++|+++.         ...|.++..+++...       ..+.+++
T Consensus       237 ~~~l~~~~~~l~~~g~l~~~~~~~~~~~fLF~d~lv~~k~~~~~~~~~~~~~~~~~~k~~~~l~~~~v~~~~~~~~~~~~  316 (354)
T 1dbh_A          237 GKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHA  316 (354)
T ss_dssp             SSCGGGTCCCEEEEEEEEETTCSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSE
T ss_pred             CCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCEE
T ss_conf             76335678658995023330256536999618779999614444444567887279986888445088988998767627


Q ss_pred             EEEEEC--CEEEEEECCHHHHHHHHHHHHH
Q ss_conf             788708--3899981898999999999971
Q T0535           266 LKIETS--ESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       266 f~i~~~--~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      |.|...  .+++|+|.|.+||+.|+++|.+
T Consensus       317 f~i~~~~~~~~~l~a~s~~ek~~W~~~L~~  346 (354)
T 1dbh_A          317 FEIILKDENSVIFSAKSAEEKNNWMAALIS  346 (354)
T ss_dssp             EEECCTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             999957998899993999999999999999


No 10 
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00  E-value=8.4e-45  Score=290.38  Aligned_cols=287  Identities=16%  Similarity=0.223  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             06899999999999999976899999-99998731024566789889988712888999998999999998862478750
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNLD-FHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ   80 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~~-~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~   80 (294)
                      .|+..||+||++||++||++|.++.+ |..|+..     .++++++++..||+|+++|+.+|+.|+..|+.+...|....
T Consensus        10 ~k~~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~-----~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~   84 (377)
T 1foe_A           10 DKLRKVICELLETERTYVKDLNCLMERYLKPLQK-----ETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLE   84 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT-----SSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             9999999999999999999999999999999855-----79999999999966799999999999999999885553555


Q ss_pred             -------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHH
Q ss_conf             -------------18999999875557-88998600789999999985009999999998-----627802567788876
Q T0535            81 -------------KVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREF-----EQSTAKHRLLRVVQR  141 (294)
Q Consensus        81 -------------~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~-----~~~~l~~~L~~PiQR  141 (294)
                                   .+|++|..+.+.+. |..||.+|..+...+.++ ++++.|..+++.+     .++++.++|++|+||
T Consensus        85 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~-~~~~~f~~fl~~~~~~~~~~~~l~~~L~~PiQR  163 (377)
T 1foe_A           85 KLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKA-KTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQR  163 (377)
T ss_dssp             GCCSGGGGHHHHHHHHHHHHHHTTGGGGHHHHHHHTTTHHHHHTTT-TTCHHHHHHHHHHCTTCCGGGSHHHHTTHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             5664254222366899999998999889999996438999999998-507689999999632125799888998589988


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHC---CCCHHCCCCCCCCCCC
Q ss_conf             44778999998642789883679999999999999999988887667-89999998-6204---4210002144543346
Q T0535           142 LFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQGEN-LQKLVHIE-HSVR---GQGDLLQPGREFLKEG  216 (294)
Q Consensus       142 l~kY~lLl~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~-~~~~~~~~-~~~~---~~~~l~~~~r~~i~~g  216 (294)
                      ++||++||++++|+||++|||+..++.|++.++.++..||+..+..+ ..++.+.. ....   .......+++.+++.+
T Consensus       164 i~rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~v~~~ine~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  243 (377)
T 1foe_A          164 VLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDLLLHTS  243 (377)
T ss_dssp             HTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSCSSCCCCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC
T ss_conf             85689999999961899985599999999999999999999999999999999999888606777756478886389887


Q ss_pred             CCCC--------CCCCCCEEEEEECCEEEEEEEECC------------------CEEEEEEEEEECCC-------CC-CC
Q ss_conf             4312--------345420025651553799986148------------------72787556641225-------56-67
Q T0535           217 TLKV--------TGKNRRPRHLFLNDVLLYTYPQKD------------------GKYRLKNTLAVSRP-------VE-KV  262 (294)
Q Consensus       217 ~~~~--------~~~~~~~~~fLf~D~li~~k~~~~------------------~~~~~~~~i~l~~~-------~~-~~  262 (294)
                      .+..        .++...+++|||+|++++|+++..                  ..+.++..+++...       .. ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~fLf~d~lll~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~  323 (377)
T 1foe_A          244 VIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEA  323 (377)
T ss_dssp             EEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTS
T ss_pred             EEEEECCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCC
T ss_conf             69993577645688861899999699399999747655331245553211246875278867770213577357865333


Q ss_pred             CCEEEEE---------ECCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             6017887---------0838999818989999999999719
Q T0535           263 PYALKIE---------TSESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       263 ~~~f~i~---------~~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ...+.+.         +...+.++|.|.++|..|+++|.+|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~~ek~~W~~~i~~~  364 (377)
T 1foe_A          324 NAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSI  364 (377)
T ss_dssp             CCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             55321353100136888628999889999999999999999


No 11 
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), SH3 domain, endocytosis; 1.56A {Homo sapiens} PDB: 1ki1_B
Probab=100.00  E-value=0  Score=324.64  Aligned_cols=289  Identities=18%  Similarity=0.198  Sum_probs=235.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             90689999999999999997689999-9999987310245667898899887128889999989999999988624787-
Q T0535             1 QSRALVIAQELLSSEKAYVELQHLNL-DFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWES-   78 (294)
Q Consensus         1 ~~~~~~ii~Eli~tE~~Yv~~l~l~~-~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~-   78 (294)
                      ++||..||+||++||++||++|.++. .|+.|+...     ++++.+++..||+|+++|+++|+.|++.|+.+...+.. 
T Consensus        25 e~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~~l~~L~~~~~~~~~~   99 (510)
T 3jzy_A           25 ERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEK   99 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999999999999999999999988567-----999988999986799999999999999999998556777


Q ss_pred             --CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             --5018999999875557-889986007899999999850099999999986------2780256778887644778999
Q T0535            79 --QQKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQVLL  149 (294)
Q Consensus        79 --~~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~lLl  149 (294)
                        ...+|++|..+.+++. |..||.++..+...+.++.++++.|..+++.++      ++++.++|++|+||++||++||
T Consensus       100 ~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~f~~~~~~~~~~~~~~l~~~L~~PvQRl~rY~lLL  179 (510)
T 3jzy_A          100 MPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLI  179 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             73639999999987778999999983688999999976117989999999851832368778999877777676789999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC----------CHHCCCCCCCCCCCCC
Q ss_conf             9986427898836799999999999999999888876-6789999998620442----------1000214454334643
Q T0535           150 TDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQG-ENLQKLVHIEHSVRGQ----------GDLLQPGREFLKEGTL  218 (294)
Q Consensus       150 ~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~----------~~l~~~~r~~i~~g~~  218 (294)
                      ++|+++||++|||+..+++|++.++.++..||+..+. ++..++.+++..+...          .....++|.++++|.+
T Consensus       180 ~~Llk~t~~~~~d~~~l~~Al~~i~~v~~~ine~~~~~e~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~~~r~li~eG~l  259 (510)
T 3jzy_A          180 RSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLHSGKL  259 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEECCE
T ss_conf             99997188877649999999999999999998999999999999999986044554200035761000367349997617


Q ss_pred             CCCCCCCCEEEEEECCEEEEEEEECCCE-----------------EEEEEEEEECC-------CCCCCCCEEEEEE-CCE
Q ss_conf             1234542002565155379998614872-----------------78755664122-------5566760178870-838
Q T0535           219 KVTGKNRRPRHLFLNDVLLYTYPQKDGK-----------------YRLKNTLAVSR-------PVEKVPYALKIET-SES  273 (294)
Q Consensus       219 ~~~~~~~~~~~fLf~D~li~~k~~~~~~-----------------~~~~~~i~l~~-------~~~~~~~~f~i~~-~~~  273 (294)
                      ...++++.+++|||+|+||+|++++...                 ..++..+++..       +.....++|.+.+ .+.
T Consensus       260 ~~~~~~~~~~~fLF~D~Llitk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~i~~~~~~  339 (510)
T 3jzy_A          260 YKTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRV  339 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EECCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEE
T ss_conf             87589956999970988999986503444566412100136774589735410134257865877666406999158706


Q ss_pred             EEEEECCHHHHHHHHHHHHHC
Q ss_conf             999818989999999999719
Q T0535           274 CLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       274 ~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ++|+|.|.+||+.|+++|++|
T Consensus       340 ~~l~a~s~~ek~~W~~~I~~a  360 (510)
T 3jzy_A          340 YTLRTDNINERTAWVQKIKAA  360 (510)
T ss_dssp             ---------------------
T ss_pred             EEEECCCHHHHHHHHHHHHHH
T ss_conf             999619999999999999999


No 12 
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, signaling complex, protein-protein complex, rhogef; HET: GDP; 3.50A {Homo sapiens}
Probab=100.00  E-value=2.8e-45  Score=293.75  Aligned_cols=283  Identities=20%  Similarity=0.274  Sum_probs=222.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf             0689999999999999997689999-999998731024566789889988712888999998999-99999886247875
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNL-DFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGI-LEELEERLSNWESQ   79 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~-~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~-l~~L~~~~~~~~~~   79 (294)
                      +||++||+||++||++||++|.++. .|+.|+....   .+....+++..||+|+++|+.+|+.| +..++.+..   ..
T Consensus        11 ~kr~~vi~ELi~tE~~Yv~~L~~l~~~y~~~L~~~~---~~~~~~~~~~~iF~ni~~i~~~h~~~ll~~l~~~~~---~~   84 (354)
T 2rgn_B           11 ERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQG---VPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLK---DP   84 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC---CCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHS---CG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC---CH
T ss_conf             999999999999999999999999999999998569---987778899998558999999999999999998542---52


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             018999999875557-8899860078999999998500999999999862780256778887644778999998642789
Q T0535            80 QKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFEQSTAKHRLLRVVQRLFQYQVLLTDYLNNLCP  158 (294)
Q Consensus        80 ~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~l~~~L~~PiQRl~kY~lLl~~llk~t~~  158 (294)
                      ..+|++|..+.++|. |..||.|++.+...+.+.......+.. ...+.+.++.++|++|+||++||++||++|+++||+
T Consensus        85 ~~ig~~f~~~~~~f~~Y~~Y~~n~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~PiqRi~rY~llL~~llk~t~~  163 (354)
T 2rgn_B           85 DWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELR-QQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNR  163 (354)
T ss_dssp             GGHHHHHHHTTTTTHHHHHHHHTSHHHHHHHTTTSHHHHHHHH-HHHCCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8889999999986103308986859999999999988999985-030368996898744888998726899999842899


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCC--CCCCCEEEEEECCEE
Q ss_conf             883679999999999999999988887667899999986204421000214454334643123--454200256515537
Q T0535           159 DSAEYDNTQGALSLISKVTDRANDSEQGENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLKVT--GKNRRPRHLFLNDVL  236 (294)
Q Consensus       159 ~~~d~~~l~~a~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~i~~g~~~~~--~~~~~~~~fLf~D~l  236 (294)
                      +|+|++.+..|.+.+..++..+|+........   +....+...+.+..+++.++.+|.....  +++..+++|||+|+|
T Consensus       164 ~~~d~~~l~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fLF~d~l  240 (354)
T 2rgn_B          164 AGMDTADLEQAVEVMCFVPKRCNDMMTLGRLR---GFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQII  240 (354)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHHHHHHHHGGGCB---SCCSCSTTSCCEEEEEEEEEECC-------CCCCEEEEEEESSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEE
T ss_conf             98145789999999999999999999887889---999887511543357726998244330024787414888606458


Q ss_pred             EEEEEECCC-------EEEEEEEEEECC-----CCCCCCCEEEEEE------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             999861487-------278755664122-----5566760178870------838999818989999999999719
Q T0535           237 LYTYPQKDG-------KYRLKNTLAVSR-----PVEKVPYALKIET------SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       237 i~~k~~~~~-------~~~~~~~i~l~~-----~~~~~~~~f~i~~------~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ++|+++.++       .|.++..++++.     ..++.++.|.+..      .+.++|+|.|.++|..|+.+|++|
T Consensus       241 l~~k~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~f~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~  316 (354)
T 2rgn_B          241 IFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQI  316 (354)
T ss_dssp             EEEEECC--------CCEEEEEEEEGGGEEEEESGGGCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9986245654556776227875888410588876789985599998068999779999769999999999999999


No 13 
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=100.00  E-value=1.3e-44  Score=289.25  Aligned_cols=285  Identities=20%  Similarity=0.242  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC-CCCCCCHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHCCCC
Q ss_conf             06899999999999999976899999-99998731024-56678988998871288899999899-99999988624787
Q T0535             2 SRALVIAQELLSSEKAYVELQHLNLD-FHGAVRALDDD-HEDTLAREELRQGLSELPAIHDLHQG-ILEELEERLSNWES   78 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~~~-~~~~l~~~~~~-~~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~   78 (294)
                      .+|..||+||++||++||++|.++.+ |+.|+...... ..+..+.+++..||+|+++|+.+|+. |++.|+.+...   
T Consensus        10 ~~R~~vi~Eli~TE~~Yv~~L~~l~~~f~~~l~~~~~~~~~~~~~~~~~~~iF~ni~~i~~~h~~~~l~~l~~~~~~---   86 (353)
T 1kz7_A           10 ILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDC---   86 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC---
T ss_conf             99999999999999999999999999999999865423688831077999986489999999999999999986546---


Q ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5018999999875557-88998600789999999985009999999998-627802567788876447789999986427
Q T0535            79 QQKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREF-EQSTAKHRLLRVVQRLFQYQVLLTDYLNNL  156 (294)
Q Consensus        79 ~~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~-~~~~l~~~L~~PiQRl~kY~lLl~~llk~t  156 (294)
                      +..+|++|+++.+.|. |..||.||+.+.+.+.++. +++.|..+.+.. .+.++.++|++|+||++||+|||++|+++|
T Consensus        87 ~~~ig~~f~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~-~~~~~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t  165 (353)
T 1kz7_A           87 PELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCS-DCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYS  165 (353)
T ss_dssp             GGGHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             188999999841689999999857388999999986-0868999986026688979998678867757899999998549


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCC------CCCCC--CCCCCCCEE
Q ss_conf             8988367999999999999999998888766789999998620442100021445433------46431--234542002
Q T0535           157 CPDSAEYDNTQGALSLISKVTDRANDSEQGENLQKLVHIEHSVRGQGDLLQPGREFLK------EGTLK--VTGKNRRPR  228 (294)
Q Consensus       157 ~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~i~------~g~~~--~~~~~~~~~  228 (294)
                      | +|||+..++.|++.++.++..+|+..+..+...   ....+...+.+...+...+.      .+.+.  ..+++..++
T Consensus       166 p-~~~d~~~l~~Al~~i~~~~~~vn~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (353)
T 1kz7_A          166 K-HCEGAEDLQEALSSILGILKAVNDSMHLIAITG---YDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRH  241 (353)
T ss_dssp             T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTEES---CCSCGGGGCCEEEEEEEEEEECCCCC-----CCCSSSCEEEE
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCEEEECCCCCCCCEEHHHHCCCCCEEE
T ss_conf             9-984599999999999999999989999999984---475599870110278526722554442000012126874589


Q ss_pred             EEEECCEEEEEEEECC--------CEEEEEEEEEECC-----CCCCCCCEEEEEE---CCEEEEEECCHHHHHHHHHHHH
Q ss_conf             5651553799986148--------7278755664122-----5566760178870---8389998189899999999997
Q T0535           229 HLFLNDVLLYTYPQKD--------GKYRLKNTLAVSR-----PVEKVPYALKIET---SESCLLSASSCAERDEWYGCLS  292 (294)
Q Consensus       229 ~fLf~D~li~~k~~~~--------~~~~~~~~i~l~~-----~~~~~~~~f~i~~---~~~~~l~a~s~~ek~~W~~~i~  292 (294)
                      +|||+|++|+|+++..        +.|.++..+++..     +.++.++.|.|..   ...|+|+|+|.++|+.|+++|+
T Consensus       242 ~fLF~d~ll~~k~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~f~l~~~~~~~~~~l~a~s~~ek~~W~~~i~  321 (353)
T 1kz7_A          242 LFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIR  321 (353)
T ss_dssp             EEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             99978868999752446654346875425667876853778678999764699988998399999599999999999999


Q ss_pred             HC
Q ss_conf             19
Q T0535           293 RA  294 (294)
Q Consensus       293 ~A  294 (294)
                      +|
T Consensus       322 ~~  323 (353)
T 1kz7_A          322 KV  323 (353)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 14 
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releasing factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B
Probab=100.00  E-value=1.6e-41  Score=270.28  Aligned_cols=279  Identities=22%  Similarity=0.283  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHCCCCC
Q ss_conf             068999999999999999768999-999999873102456678988998871288899999899-999999886247875
Q T0535             2 SRALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQG-ILEELEERLSNWESQ   79 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~   79 (294)
                      .||.+||+||++||++||++|.++ ..|+.|+........+.+.. +...||+|+++|+.+|+. |+..++..   +...
T Consensus         8 ~kR~~vi~El~~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~-~~~~lF~ni~~i~~~h~~~ll~~le~~---~~~~   83 (311)
T 1nty_A            8 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVN-KELIIFGNMQEIYEFHNNIFLKELEKY---EQLP   83 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTT-CHHHHHTTHHHHHHHHHHTHHHHHHHT---TTCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHCCHHHHHHHHHHHHHHHHHHH---HCCH
T ss_conf             999999999999999999999999999999998614248710000-598874279999999999889999975---4271


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             018999999875557-889986007899999999850099999999-986278025677888764477899999864278
Q T0535            80 QKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVR-EFEQSTAKHRLLRVVQRLFQYQVLLTDYLNNLC  157 (294)
Q Consensus        80 ~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~-~~~~~~l~~~L~~PiQRl~kY~lLl~~llk~t~  157 (294)
                      .++|++|..+.+.|. |..||.+++.+...+.+..+  ..+..+.. ...+.++.++|++|+||++||++||++++++||
T Consensus        84 ~~ig~~f~~~~~~f~~Y~~Y~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~~~L~~~L~~P~qRl~rY~lLL~~llk~t~  161 (311)
T 1nty_A           84 EDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAG--SYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCE  161 (311)
T ss_dssp             GGTHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHTT--THHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             899999997333545699988476999999999899--999999962056767889984689999989999999872598


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHC-CCCCCCCCCCCCCCCCCCCCEEEEEECCEE
Q ss_conf             9883679999999999999999988887667899999986204421000-214454334643123454200256515537
Q T0535           158 PDSAEYDNTQGALSLISKVTDRANDSEQGENLQKLVHIEHSVRGQGDLL-QPGREFLKEGTLKVTGKNRRPRHLFLNDVL  236 (294)
Q Consensus       158 ~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~l~-~~~r~~i~~g~~~~~~~~~~~~~fLf~D~l  236 (294)
                      ++|||   ++.|++.+..+...+|+..+..+....   .......+.++ ..++.+...|.  ..+++..+++|||+|+|
T Consensus       162 ~~~~d---l~~a~~~~~~v~~~vn~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~fLF~d~l  233 (311)
T 1nty_A          162 EGKGE---IKDGLEVMLSVPKRANDAMHLSMLEGF---DENIESQGELILQESFQVWDPKT--LIRKGRERHLFLFEMSL  233 (311)
T ss_dssp             TTCTT---HHHHHHHHHHHHHHHHHHHHHTTEESC---CSCSGGGCCEEEEEEEEEECSSS--SSCCEEEEEEEEESSEE
T ss_pred             CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCEEEECCEEEECCCC--CCCCCCEEEEEEECCEE
T ss_conf             75699---999999999999999999988866401---34555313125655637862642--22432134677464737


Q ss_pred             EEEEEECCC----EEEEEEEEEECC-----CCCCCCCEEEEE------ECCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             999861487----278755664122-----556676017887------0838999818989999999999719
Q T0535           237 LYTYPQKDG----KYRLKNTLAVSR-----PVEKVPYALKIE------TSESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       237 i~~k~~~~~----~~~~~~~i~l~~-----~~~~~~~~f~i~------~~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      |+|++.+.+    .|.++..+++.+     ..++.+..|.+.      ...+++|+|+|.+||+.|+++|++|
T Consensus       234 l~~k~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~  306 (311)
T 1nty_A          234 VFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREV  306 (311)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCEEEEEEEEECCCEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9998635567885179966877565388985789973289998327999859999839999999999999999


No 15 
>3gf9_A Intersectin 2; structural genomics consortium, guanine nucleotide exchange factor, SGC, SH3 domain, endocytosis; 2.50A {Homo sapiens}
Probab=100.00  E-value=1.4e-35  Score=233.97  Aligned_cols=183  Identities=15%  Similarity=0.145  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf             068999999999999999768999-99999987310245667898899887128889999989999999988624787--
Q T0535             2 SRALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWES--   78 (294)
Q Consensus         2 ~~~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~--   78 (294)
                      ++|..|++||++||++||++|.++ ..|+.|+...     ++++++++..||+|+++|+.+|+.|+..|+.+...+..  
T Consensus        97 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~  171 (295)
T 3gf9_A           97 RKRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKM  171 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----SSSCHHHHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999989999999999999999999866-----8999899999828999999999999999999985566556


Q ss_pred             -CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             -5018999999875557-889986007899999999850099999999986------27802567788876447789999
Q T0535            79 -QQKVADVFLAREQGFD-HHAHILQFDRYLGLLSENCLHSPRLAAAVREFE------QSTAKHRLLRVVQRLFQYQVLLT  150 (294)
Q Consensus        79 -~~~i~~~f~~~~~~~~-y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~------~~~l~~~L~~PiQRl~kY~lLl~  150 (294)
                       ...||++|+.+.+++. |..||.+++.+...+.+..++++.|..+++.+.      +++|.++|++|+||++||++||+
T Consensus       172 ~~~~Ig~~f~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~L~~~L~~PvQRi~rY~llL~  251 (295)
T 3gf9_A          172 PVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIR  251 (295)
T ss_dssp             -CCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSTTTTTCCHHHHTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             33089999999988757899998714889999999870179999999999809223686879998089989989999999


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             986427898836799999999999999999888876678
Q T0535           151 DYLNNLCPDSAEYDNTQGALSLISKVTDRANDSEQGENL  189 (294)
Q Consensus       151 ~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~~  189 (294)
                      +|+|+||++|||+..++.|++.++.++..||+.++..+.
T Consensus       252 ~llk~T~~~h~d~~~l~~al~~~~~i~~~iNe~~r~~En  290 (295)
T 3gf9_A          252 SILENTPESHADHSSLKLALERAEELCSQVNEGVREKEN  290 (295)
T ss_dssp             HHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999858999843999999999999999999999999998


No 16 
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=100.00  E-value=1.1e-34  Score=228.67  Aligned_cols=180  Identities=16%  Similarity=0.207  Sum_probs=156.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9068999999999999999768999-999999873102456678988998871288899999899999999886247875
Q T0535             1 QSRALVIAQELLSSEKAYVELQHLN-LDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQ   79 (294)
Q Consensus         1 ~~~~~~ii~Eli~tE~~Yv~~l~l~-~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~   79 (294)
                      ++++-.||+||++||++||++|..+ ..|+.|+...     +.++++++..||+|+++|+.+|+.|+..|+.+...|...
T Consensus        11 ~~~~~~ii~ELi~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~lF~ni~~i~~~h~~fl~~L~~~~~~~~~~   85 (209)
T 1by1_A           11 KSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTS-----EKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQ   85 (209)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----SSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             899999999999999999999999999999998647-----899999999998359999998999999999988589507


Q ss_pred             CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             018999999875557--88998600789999999985009999999998-----62780256778887644778999998
Q T0535            80 QKVADVFLAREQGFD--HHAHILQFDRYLGLLSENCLHSPRLAAAVREF-----EQSTAKHRLLRVVQRLFQYQVLLTDY  152 (294)
Q Consensus        80 ~~i~~~f~~~~~~~~--y~~y~~~~~~~~~~l~~~~~~~~~f~~~~~~~-----~~~~l~~~L~~PiQRl~kY~lLl~~l  152 (294)
                      .++|++|+.+.+.|.  |..||.+++.+...+.+..   +.|..|++.+     .+.++.++|++|+||++||++||++|
T Consensus        86 ~~ig~~fl~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~---~~~~~f~~~~~~~~~~~~~L~~~Li~PvQRl~rY~lLL~~l  162 (209)
T 1by1_A           86 QRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHS---EELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKEL  162 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTHHHHTTTTCCCSSTTTHHHHHTTSTTTGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             589999999888885789999975899999999953---68999999763344667788998644888996799999999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             642789883679999999999999999988887667
Q T0535           153 LNNLCPDSAEYDNTQGALSLISKVTDRANDSEQGEN  188 (294)
Q Consensus       153 lk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~~  188 (294)
                      +++||++|+|+..|..|++.++.++..||+.++..+
T Consensus       163 lk~t~~~~~d~~~L~~a~~~~~~~~~~iNe~~r~~E  198 (209)
T 1by1_A          163 ERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKE  198 (209)
T ss_dssp             HHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             974899980499999999999999999999999999


No 17 
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=99.37  E-value=2.8e-12  Score=91.63  Aligned_cols=90  Identities=23%  Similarity=0.357  Sum_probs=69.8

Q ss_pred             HCCCCCCCCCCCCCCCC-C---CC-CCEEEEEECCEEEEEEEECC--CEEEEEEEEEECCC-------CCCCCCEEEEEE
Q ss_conf             00214454334643123-4---54-20025651553799986148--72787556641225-------566760178870
Q T0535           205 LLQPGREFLKEGTLKVT-G---KN-RRPRHLFLNDVLLYTYPQKD--GKYRLKNTLAVSRP-------VEKVPYALKIET  270 (294)
Q Consensus       205 l~~~~r~~i~~g~~~~~-~---~~-~~~~~fLf~D~li~~k~~~~--~~~~~~~~i~l~~~-------~~~~~~~f~i~~  270 (294)
                      +..|||.++++|.+... .   +. ..+++|||||+|++|++...  ++|.++..+++...       .+...++|.+.+
T Consensus         1 l~~pgR~Li~eG~l~~~~~~~~k~~~~~~~fLFnD~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~~~~~f~i~~   80 (113)
T 1zc3_B            1 LETPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLM   80 (113)
T ss_dssp             ----CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEE
T ss_pred             CCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCEEEEECC
T ss_conf             98999799994179998567798642699997458589999716667447521352243100122034445102479647


Q ss_pred             -CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             -838999818989999999999719
Q T0535           271 -SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 -~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                       .++++++|.|.+||..|+++|++|
T Consensus        81 ~~~~~~~~a~s~~ek~~Wi~~i~~a  105 (113)
T 1zc3_B           81 FPESRIFQAENAKIKREWLEVLEET  105 (113)
T ss_dssp             TTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             9808999979999999999999999


No 18 
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.12  E-value=1.9e-10  Score=80.48  Aligned_cols=89  Identities=11%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCCCCCCCCCCCCCC----CCCCCEEEEEECCEEEEEEEEC-CCEEEEEEEEEECCC-------CCCCCCEEEEEE--C
Q ss_conf             0214454334643123----4542002565155379998614-872787556641225-------566760178870--8
Q T0535           206 LQPGREFLKEGTLKVT----GKNRRPRHLFLNDVLLYTYPQK-DGKYRLKNTLAVSRP-------VEKVPYALKIET--S  271 (294)
Q Consensus       206 ~~~~r~~i~~g~~~~~----~~~~~~~~fLf~D~li~~k~~~-~~~~~~~~~i~l~~~-------~~~~~~~f~i~~--~  271 (294)
                      +...+.++++|.+.+.    .+.+.+++|||+|+|++||+.. .+.|.++..+++...       .+..+++|.|.+  .
T Consensus        22 l~~~G~li~~g~~~~~~~~~~k~k~R~lfLF~~~Ll~~K~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~  101 (132)
T 1v61_A           22 IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTV  101 (132)
T ss_dssp             STTTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSS
T ss_pred             HHHCCCEEEEEEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECHHHCEECCCCCCCCCCCEEEEECCCC
T ss_conf             56568889998899996478871379999958989999973688835882110100010002335657664067751788


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             38999818989999999999719
Q T0535           272 ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 ~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +.++++|.|++||++|+++|+++
T Consensus       102 ~~~~l~a~s~eek~~W~~~L~~~  124 (132)
T 1v61_A          102 ERIVVHCNNNQDFQEWMEQLNRL  124 (132)
T ss_dssp             CEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHH
T ss_conf             57999929999999999999999


No 19 
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=99.12  E-value=4.4e-11  Score=84.28  Aligned_cols=91  Identities=12%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             CHHCCCCCCCCCCCCCCCC---CCCCCEEEEEECCEEEEEEEECC---CEEEEEEEEEECCC----CCCCCCEEEEEECC
Q ss_conf             1000214454334643123---45420025651553799986148---72787556641225----56676017887083
Q T0535           203 GDLLQPGREFLKEGTLKVT---GKNRRPRHLFLNDVLLYTYPQKD---GKYRLKNTLAVSRP----VEKVPYALKIETSE  272 (294)
Q Consensus       203 ~~l~~~~r~~i~~g~~~~~---~~~~~~~~fLf~D~li~~k~~~~---~~~~~~~~i~l~~~----~~~~~~~f~i~~~~  272 (294)
                      +++...|+ ++.+|...+.   ++.+.+++|||+|+||+|+++..   ..|.+++.|++.+.    .+++++.|.+.+.+
T Consensus         2 g~i~~~G~-ll~~~~~~v~~~~~k~k~R~vFLF~~~Ll~~K~~~~~~~~~y~~K~~i~l~~~~v~d~~~d~~~F~l~~~~   80 (119)
T 1fho_A            2 GDTGKLGR-IIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTDEDTIVLQPQE   80 (119)
T ss_dssp             CSCCCCCC-SSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTTCCEEEEECCS
T ss_pred             CCHHHCCC-EEEEEEEEEEECCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCEEEEEECC
T ss_conf             77465977-39972599994799861789999678799998516899965999479987967979779998489999689


Q ss_pred             --------EEEEEECCHHHHHHHHHHHHHC
Q ss_conf             --------8999818989999999999719
Q T0535           273 --------SCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       273 --------~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                              .+.++|.|+++|+.|+++|.+|
T Consensus        81 ~~~~~~~i~~~l~a~s~~~K~~W~~~I~e~  110 (119)
T 1fho_A           81 PGLPSFRIKPKDFETSEYVRKAWLRDIAEE  110 (119)
T ss_dssp             TTCCCBCCCCCSSSSCSHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             997515898772059868999999999999


No 20 
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transport; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.00  E-value=0.0006  Score=40.69  Aligned_cols=81  Identities=19%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             CCCCCCCCCC------CCCCCEEEEEECCEEEEEEEECCCEEEEEEEEEEC------CCCCCCCCEEEEEEC---CEEEE
Q ss_conf             4334643123------45420025651553799986148727875566412------255667601788708---38999
Q T0535           212 FLKEGTLKVT------GKNRRPRHLFLNDVLLYTYPQKDGKYRLKNTLAVS------RPVEKVPYALKIETS---ESCLL  276 (294)
Q Consensus       212 ~i~~g~~~~~------~~~~~~~~fLf~D~li~~k~~~~~~~~~~~~i~l~------~~~~~~~~~f~i~~~---~~~~l  276 (294)
                      ..++|.+...      .+.+.+++|++.+-.++...+.+..  -...|.|.      .+..+-++||.|.+.   .+++|
T Consensus       278 ~~~~G~L~~~~~~~~~~~~w~rr~~~~~~~~l~~~~~~~~~--~~~~i~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l  355 (385)
T 2q13_A          278 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA--GGLAMDIDNCSVMAVDCEDRRYCFQITSFDGKKSSIL  355 (385)
T ss_dssp             SCCEEEEEEC--------CCEEEEEEEETTEEEEECSSCSS--CEEEEECTTCEEEEECCTTCSSEEEEECTTSCBCCCE
T ss_pred             CEEEEEEEEECCCCCCCCCCCEEEEEEECCEEEEECCCCCC--CCEEEECCEEEEEECCCCCCCCEEEEEECCCCCEEEE
T ss_conf             50431555125789987665127999989999996279878--8638987815998678888881389997499834999


Q ss_pred             EECCHHHHHHHHHHHHHC
Q ss_conf             818989999999999719
Q T0535           277 SASSCAERDEWYGCLSRA  294 (294)
Q Consensus       277 ~a~s~~ek~~W~~~i~~A  294 (294)
                      +|.|.+|++.|+.+|+.|
T Consensus       356 qA~s~~~~~~Wi~~l~~~  373 (385)
T 2q13_A          356 QAESKKDHEEWICTINNI  373 (385)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHH
T ss_conf             739999999999999999


No 21 
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65  E-value=0.00011  Score=45.28  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             CCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC-----CCCCCCCEEEEEE-CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             420025651-5537999861487278755664122-----5566760178870-838999818989999999999719
Q T0535           224 NRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR-----PVEKVPYALKIET-SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       224 ~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~-----~~~~~~~~f~i~~-~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +.+.++|.+ ++.+.+...+..........|+|..     ..++.+++|.|.. .+.+.|.|.|.++++.|+++|++|
T Consensus        25 ~WkkRwfvL~~~~l~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~W~~ai~~~  102 (119)
T 2dhk_A           25 GWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMK  102 (119)
T ss_dssp             CCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECTTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCEEEEEECCCHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             703789999799557998276111012342355550368613433313431579849999829999999999999999


No 22 
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.58  E-value=0.00026  Score=42.89  Aligned_cols=81  Identities=22%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             CCCCCCC-CCCCCCEEEEEECCEEEEEEEECCCEEEEEEEEEECC------CCCCCCCEEEEEEC--CEEEEEECCHHHH
Q ss_conf             3464312-3454200256515537999861487278755664122------55667601788708--3899981898999
Q T0535           214 KEGTLKV-TGKNRRPRHLFLNDVLLYTYPQKDGKYRLKNTLAVSR------PVEKVPYALKIETS--ESCLLSASSCAER  284 (294)
Q Consensus       214 ~~g~~~~-~~~~~~~~~fLf~D~li~~k~~~~~~~~~~~~i~l~~------~~~~~~~~f~i~~~--~~~~l~a~s~~ek  284 (294)
                      .+|-+.+ ..+..+.|+|.+.+-.+..-+.....-..+..|.|..      ...+.+++|.|.+.  +.+.|+|.|.+|+
T Consensus        10 ~~gyL~k~~~~~WkkRwfvL~~~~L~yyk~~~~~~~p~~~I~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~l~A~s~~e~   89 (107)
T 2cof_A           10 TSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEM   89 (107)
T ss_dssp             TCCEEEEEETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTEEEEEEECSSHHHH
T ss_pred             EEEEEECCCCCCCCCEEEEEECCEEEEECCCCHHHHHCCCEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCHHHH
T ss_conf             43553004799913189999799981755510001210301216864346633466506887626982479854999999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999719
Q T0535           285 DEWYGCLSRA  294 (294)
Q Consensus       285 ~~W~~~i~~A  294 (294)
                      +.|+.+|.+|
T Consensus        90 ~~Wi~aL~~~   99 (107)
T 2cof_A           90 GHWLGLLLSE   99 (107)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 23 
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 2ys1_A
Probab=97.56  E-value=0.00046  Score=41.38  Aligned_cols=82  Identities=16%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCC-----CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEEC--------CCCCCCCCEEEEEEC-----
Q ss_conf             543346431234-----5420025651-553799986148727875566412--------255667601788708-----
Q T0535           211 EFLKEGTLKVTG-----KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVS--------RPVEKVPYALKIETS-----  271 (294)
Q Consensus       211 ~~i~~g~~~~~~-----~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~--------~~~~~~~~~f~i~~~-----  271 (294)
                      ..+++|.+...+     +..+.++|.+ ++.|.+.+....  ..-++.+++.        ......+++|.+.+.     
T Consensus        11 ~V~k~GwL~k~~~~~~~~~WkkRwfVL~~~~L~yyk~~~~--~~~~~~i~l~~~~~~~~~~~~~~~~~~F~l~~~~~~~~   88 (125)
T 1dyn_A           11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEE--KEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNV   88 (125)
T ss_dssp             CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTC--SCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCS
T ss_pred             EEEEEEEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCC
T ss_conf             0899822499789876677346699998999989888665--56445401346300011245445544212028776313


Q ss_pred             ----CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             ----38999818989999999999719
Q T0535           272 ----ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 ----~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                          +.+.|+|.|.+|++.|+.+|.+|
T Consensus        89 ~~~~r~~~l~a~s~~e~~~W~~al~~A  115 (125)
T 1dyn_A           89 YKDYRQLELACETQEEVDSWKASFLRA  115 (125)
T ss_dssp             STTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             467506999809999999999999986


No 24 
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=97.51  E-value=0.00075  Score=40.10  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             HHHHHHCCCCHHCCCCCCCCCCCCCCCC-CCCCCEEEEEEC-CEEEEEEEECCCEEEEEEEEEECCCC---CCCCCEEEE
Q ss_conf             9986204421000214454334643123-454200256515-53799986148727875566412255---667601788
Q T0535           194 HIEHSVRGQGDLLQPGREFLKEGTLKVT-GKNRRPRHLFLN-DVLLYTYPQKDGKYRLKNTLAVSRPV---EKVPYALKI  268 (294)
Q Consensus       194 ~~~~~~~~~~~l~~~~r~~i~~g~~~~~-~~~~~~~~fLf~-D~li~~k~~~~~~~~~~~~i~l~~~~---~~~~~~f~i  268 (294)
                      ..+.....+.. ..+++..+++|.+... +...+.|+|++. +-+++.+...+  -..++.|+++...   ...+++|.|
T Consensus        35 ~~q~~~~~~~~-~~~~~~IlK~G~L~Krgg~~wKkRwFvLt~~~llYY~d~~~--~~~KG~I~Ls~~~~ve~~~~~~F~I  111 (151)
T 1w1g_A           35 EKQAGGNPWHQ-FVENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVN--KVLKGEIPWSQELRPEAKNFKTFFV  111 (151)
T ss_dssp             HHHHHHCTTGG-GTTTCCEEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTT--TEEEEEECCCTTCEEEESSSSEEEE
T ss_pred             HHHHCCCCCCC-CCCCCCEEEEEEEEECCCCEEEEEEEEEECCCEEEEEECCC--CCCCCCEEEEECCCCCCCCCCEEEE
T ss_conf             87753685534-46787389999998146770106899995894899980664--5404733521011323578725999


Q ss_pred             EEC-CEEEEEECCHHHHHHHHHHHHH
Q ss_conf             708-3899981898999999999971
Q T0535           269 ETS-ESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       269 ~~~-~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      .+. .+|.|.+ +..++++|+++|++
T Consensus       112 ~tp~RtY~l~d-s~~e~~~Wv~aI~~  136 (151)
T 1w1g_A          112 HTPNRTYYLMD-PSGNAHKWCRKIQE  136 (151)
T ss_dssp             EETTEEEEEEC-TTSCHHHHHHHHHH
T ss_pred             ECCCEEEEEEC-CHHHHHHHHHHHHH
T ss_conf             71884899977-84779999999999


No 25 
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=97.48  E-value=0.00023  Score=43.17  Aligned_cols=85  Identities=22%  Similarity=0.303  Sum_probs=49.1

Q ss_pred             CCCCCCCCCCCCC---CCCCEEEE-EECCEEEEEEEECCCEEEEEEEEEECC------------CCCCCCCEEEEEEC--
Q ss_conf             4543346431234---54200256-515537999861487278755664122------------55667601788708--
Q T0535           210 REFLKEGTLKVTG---KNRRPRHL-FLNDVLLYTYPQKDGKYRLKNTLAVSR------------PVEKVPYALKIETS--  271 (294)
Q Consensus       210 r~~i~~g~~~~~~---~~~~~~~f-Lf~D~li~~k~~~~~~~~~~~~i~l~~------------~~~~~~~~f~i~~~--  271 (294)
                      +..+++|.+...+   ++.+.++| |.++.+.+..........-++.+++..            .....+++|.|.+.  
T Consensus         5 ~~iikeG~L~K~~~~~k~Wk~r~~vL~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~   84 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   84 (109)
T ss_dssp             CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTC
T ss_pred             CCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf             85999999998879999807899999878016999836665565665024673799951223445567772599995898


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             38999818989999999999719
Q T0535           272 ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 ~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ..+.|+|.|.+|+..|+++|+.|
T Consensus        85 ~~~~~~a~s~~e~~~Wi~ai~~a  107 (109)
T 2i5f_A           85 VHYFLQAATPKERTEWIKAIQMA  107 (109)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH
T ss_conf             39999859999999999999997


No 26 
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=97.47  E-value=0.00085  Score=39.76  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=27.8

Q ss_pred             CCCEEEEEE-CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             760178870-838999818989999999999719
Q T0535           262 VPYALKIET-SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       262 ~~~~f~i~~-~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      .+++|.|.. ...++|+|.|.+|++.|+++|.+|
T Consensus        97 ~~~~F~i~~~~r~~~L~Aes~ee~~~WI~aL~~~  130 (169)
T 1btk_A           97 FPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNV  130 (169)
T ss_dssp             CCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             7721899959907999849999999999999999


No 27 
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=97.43  E-value=0.00053  Score=41.01  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCCCCCC----CCCCEEEEEEC-CEEEEEEEECCCEEEEEEEEEECC---------CCCCCCCEEEEEEC--
Q ss_conf             144543346431234----54200256515-537999861487278755664122---------55667601788708--
Q T0535           208 PGREFLKEGTLKVTG----KNRRPRHLFLN-DVLLYTYPQKDGKYRLKNTLAVSR---------PVEKVPYALKIETS--  271 (294)
Q Consensus       208 ~~r~~i~~g~~~~~~----~~~~~~~fLf~-D~li~~k~~~~~~~~~~~~i~l~~---------~~~~~~~~f~i~~~--  271 (294)
                      +....+++|.+...+    +..+.++|.+. +.|.+.+... . ...++.|++..         +...-+++|.|...  
T Consensus        17 ~~~~~~k~G~L~K~~~~~~k~WkkR~fvL~~~~L~y~~~~~-~-~~~~~~i~l~~~~v~~~~~~~~~~~~~~F~i~~~~~   94 (128)
T 2dkp_A           17 PNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK-E-EGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNM   94 (128)
T ss_dssp             TTSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT-C-CSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSS
T ss_pred             CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCC-C-CCCCCEECCCCEEEEEECCCCCCCCCCEEEEECCCC
T ss_conf             89976789999993899999837899999899998870456-6-666505744310156622201346775588645998


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             38999818989999999999719
Q T0535           272 ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 ~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +.++|+|.|.+|+++|+.+|.+|
T Consensus        95 ~~~~l~a~s~~e~~~Wi~ai~~a  117 (128)
T 2dkp_A           95 RTYYFCTDTGKEMELWMKAMLDA  117 (128)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCHHHHHHHHHHHHHH
T ss_conf             49999959999999999999999


No 28 
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.41  E-value=0.00067  Score=40.40  Aligned_cols=87  Identities=21%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             CCCCCCCCCCCCCCC---------CCCCCEEEEEECC------EEEEEEEECCCEEEEEEEEEEC------CCCCCCCCE
Q ss_conf             214454334643123---------4542002565155------3799986148727875566412------255667601
Q T0535           207 QPGREFLKEGTLKVT---------GKNRRPRHLFLND------VLLYTYPQKDGKYRLKNTLAVS------RPVEKVPYA  265 (294)
Q Consensus       207 ~~~r~~i~~g~~~~~---------~~~~~~~~fLf~D------~li~~k~~~~~~~~~~~~i~l~------~~~~~~~~~  265 (294)
                      ......+++|.+...         .++.+.|+|.+.+      .|++.+..... -..+..+.+.      .....-+++
T Consensus        13 ~~~~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~-~~~~g~i~l~~~~~~~~~~~~~~~~   91 (150)
T 1wg7_A           13 SQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS-KEPKGSIFLDSCMGVVQNNKVRRFA   91 (150)
T ss_dssp             BCSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS-SCCSEEECTTTCCEECCCCSSCTTE
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCC-CCCEEEEECCCCEEEECCCCCCCEE
T ss_conf             778988689888974677776645465338999997476776057899602456-5531553024531552376656446


Q ss_pred             EEEEEC--CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             788708--38999818989999999999719
Q T0535           266 LKIETS--ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       266 f~i~~~--~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      |.|...  ..|+|+|.|.+|++.|+++|++|
T Consensus        92 f~i~~~~~r~~~l~A~s~~e~~~Wv~ai~~a  122 (150)
T 1wg7_A           92 FELKMQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             9997068808999939989999999999999


No 29 
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.39  E-value=0.00028  Score=42.71  Aligned_cols=81  Identities=22%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCC--CCCEEEEEECC---EEEEEEEECCCEEEEEEEEEECC---------CCCCCCCEEEEEE-CCEEEEE
Q ss_conf             33464312345--42002565155---37999861487278755664122---------5566760178870-8389998
Q T0535           213 LKEGTLKVTGK--NRRPRHLFLND---VLLYTYPQKDGKYRLKNTLAVSR---------PVEKVPYALKIET-SESCLLS  277 (294)
Q Consensus       213 i~~g~~~~~~~--~~~~~~fLf~D---~li~~k~~~~~~~~~~~~i~l~~---------~~~~~~~~f~i~~-~~~~~l~  277 (294)
                      +..|.+.+..+  +.+.++|.+.+   .+++...... .......|+|..         +..+.+++|.|.+ ...+.|+
T Consensus         9 ~~~G~L~~~~~~k~W~krwfvL~~~~~~~l~~~~~~~-~~~~~~~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~~~~l~   87 (112)
T 2coc_A            9 LLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQ-DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLS   87 (112)
T ss_dssp             SSEEEEEEESSSSCEEEEEEECCTTCTTCEEEECCTT-CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             8888658347999842889999689845999715565-656533335664257502343444661689998399599997


Q ss_pred             ECCHHHHHHHHHHHHHC
Q ss_conf             18989999999999719
Q T0535           278 ASSCAERDEWYGCLSRA  294 (294)
Q Consensus       278 a~s~~ek~~W~~~i~~A  294 (294)
                      |.|.+|++.|+++|++|
T Consensus        88 A~s~~e~~~Wv~aL~~a  104 (112)
T 2coc_A           88 ASSAELQQQWLETLSTA  104 (112)
T ss_dssp             ESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             79999999999999999


No 30 
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38  E-value=0.00056  Score=40.86  Aligned_cols=86  Identities=21%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCCCCCCC----CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC---------CCCCCCCEEEEEEC-
Q ss_conf             2144543346431234----5420025651-5537999861487278755664122---------55667601788708-
Q T0535           207 QPGREFLKEGTLKVTG----KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR---------PVEKVPYALKIETS-  271 (294)
Q Consensus       207 ~~~r~~i~~g~~~~~~----~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~---------~~~~~~~~f~i~~~-  271 (294)
                      .++...+++|.+...+    ++.+.++|.+ ++.|.+.+... . -.....+++..         .....+++|.+... 
T Consensus        17 ~~~~~~~k~G~L~K~~~~~~~~Wkkr~~vL~~~~L~~y~~~~-~-~~~~~~i~l~~~~~~~~~~~~~~~~~~~f~i~~~~   94 (122)
T 2yry_A           17 NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK-E-ESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG   94 (122)
T ss_dssp             CTTCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT-C-CSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSS
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEECCC-C-CCCCCEEECCCCEEEEEECCCCCCCCCEEEEECCC
T ss_conf             989981699999994899999837899999899998872356-5-56310588777489997030155775379998489


Q ss_pred             -CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             -38999818989999999999719
Q T0535           272 -ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 -~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                       ..++|+|.|.++++.|+.+|.+|
T Consensus        95 ~~~~~~~a~s~~e~~~Wi~ai~~A  118 (122)
T 2yry_A           95 VRTYFFSAESPEEQEAWIQAMGEA  118 (122)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             849999939999999999999999


No 31 
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36  E-value=0.00089  Score=39.64  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCCC----CCCCEEEEEECCEEEEEEEECCCEEEEEEEEEECC---------CCCCCCCEEEEEE--CCEEE
Q ss_conf             543346431234----54200256515537999861487278755664122---------5566760178870--83899
Q T0535           211 EFLKEGTLKVTG----KNRRPRHLFLNDVLLYTYPQKDGKYRLKNTLAVSR---------PVEKVPYALKIET--SESCL  275 (294)
Q Consensus       211 ~~i~~g~~~~~~----~~~~~~~fLf~D~li~~k~~~~~~~~~~~~i~l~~---------~~~~~~~~f~i~~--~~~~~  275 (294)
                      ..+++|.+...+    +..+.++|.+.|-.|+.-+...+ -.....+++..         .....+++|.|..  ...++
T Consensus        10 ~v~~~G~L~K~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~   88 (117)
T 2d9y_A           10 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE-ESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF   88 (117)
T ss_dssp             CCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTC-CSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEE
T ss_pred             CEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCC-CCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEE
T ss_conf             811899999958999998658899996999999506445-7621489814346899704224476538999738981999


Q ss_pred             EEECCHHHHHHHHHHHHHC
Q ss_conf             9818989999999999719
Q T0535           276 LSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       276 l~a~s~~ek~~W~~~i~~A  294 (294)
                      |+|.|.++++.|+.+|++|
T Consensus        89 ~~a~s~~~~~~Wi~ai~~a  107 (117)
T 2d9y_A           89 FSAESPEEQEAWIQAMGEA  107 (117)
T ss_dssp             EECSSHHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHHHHHH
T ss_conf             9919999999999999998


No 32 
>3feh_A Centaurin-alpha-1; structural genomics consortium, GAP, GTPase activation, SGC, cytoplasm, metal-binding, nucleus, phosphoprotein, polymorphism; 1.90A {Homo sapiens} PDB: 3fm8_C
Probab=97.30  E-value=0.00086  Score=39.74  Aligned_cols=83  Identities=23%  Similarity=0.424  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCCC----CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEEC---------------CCCCCCCCEEEEE
Q ss_conf             4543346431234----5420025651-553799986148727875566412---------------2556676017887
Q T0535           210 REFLKEGTLKVTG----KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVS---------------RPVEKVPYALKIE  269 (294)
Q Consensus       210 r~~i~~g~~~~~~----~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~---------------~~~~~~~~~f~i~  269 (294)
                      +..+++|.+...+    ++.+.++|.+ .+.|.+.+...+.  ..++.|++.               ....+.+++|.|.
T Consensus       267 ~~~~k~G~L~K~g~~~~~~WkkRwfvL~~~~L~yyk~~~d~--~p~g~I~L~~~~~~~~~~~~~~~~~~~~~~~~~F~l~  344 (386)
T 3feh_A          267 RNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDA--FARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIV  344 (386)
T ss_dssp             CCCSEEEEEEECC------CEEEEEEEETTEEEEESSTTCS--BCCEEEECCCGGGTCEEEESCCSSCCSCCCSEEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCC--CCCEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf             57764226999899989985268999979999998179987--6432798877504678303455555567897479998


Q ss_pred             E-CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             0-838999818989999999999719
Q T0535           270 T-SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       270 ~-~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      + .+.+.|+|.|.+|+..|+.+|++|
T Consensus       345 t~~r~~~f~Aes~ee~~~Wi~aL~~A  370 (386)
T 3feh_A          345 TPDRKFLFACETESDQREWVAAFQKA  370 (386)
T ss_dssp             CSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ECCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             09958999849999999999999999


No 33 
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=97.27  E-value=0.0007  Score=40.29  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=50.5

Q ss_pred             CCCCCCCCCCCCCCCC----CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEEC---------CCCCCCCCEEEEEE--
Q ss_conf             2144543346431234----5420025651-553799986148727875566412---------25566760178870--
Q T0535           207 QPGREFLKEGTLKVTG----KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVS---------RPVEKVPYALKIET--  270 (294)
Q Consensus       207 ~~~r~~i~~g~~~~~~----~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~---------~~~~~~~~~f~i~~--  270 (294)
                      .++...+++|.+...+    ++.+.++|.+ ++.|.+.+.....+  .+..+.+.         ....+.+++|.+..  
T Consensus         6 ~~~~~~~~eG~L~k~~~~~~k~W~kryfvL~~~~L~~~~~~~~~~--~~~~i~l~~~~v~~~~~~~~~~~~~~f~~~~~~   83 (123)
T 1upq_A            6 DPNLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREES--VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPG   83 (123)
T ss_dssp             CTTSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCS--CCEEEEGGGCEEEECCSSCTTSSSSEEEEECTT
T ss_pred             CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCEEEEECCCCCCC--CCCEECCCCEEEEEECCCCCCCCCEEEEEECCC
T ss_conf             999970799999993899999806899999799998862555323--333051553389862267666762579974389


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             838999818989999999999719
Q T0535           271 SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 ~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ...+.|+|.|.+|++.|+.+|++|
T Consensus        84 ~~~~~l~a~s~~e~~~Wi~ai~~a  107 (123)
T 1upq_A           84 MRTYVLAADTLEDLRGWLRALGRA  107 (123)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             829999809999999999999999


No 34 
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by vector-derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=97.26  E-value=0.0011  Score=39.17  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CCCCCCCCCCCCC-------CCCCEEEE-EECCEEEEEEEECCCEEEEEEEEEECC----------CCCCCCCEEEEEEC
Q ss_conf             4543346431234-------54200256-515537999861487278755664122----------55667601788708
Q T0535           210 REFLKEGTLKVTG-------KNRRPRHL-FLNDVLLYTYPQKDGKYRLKNTLAVSR----------PVEKVPYALKIETS  271 (294)
Q Consensus       210 r~~i~~g~~~~~~-------~~~~~~~f-Lf~D~li~~k~~~~~~~~~~~~i~l~~----------~~~~~~~~f~i~~~  271 (294)
                      ...+++|.+...+       ++.+.++| |.++.|.+.+......  .++.+.|..          .....+++|.|...
T Consensus        15 ~~~~k~G~L~k~~~~~~~~~k~WkkrwfvL~~~~L~yy~~~~~~~--~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~   92 (148)
T 1u5f_A           15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ--QKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAP   92 (148)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS--CSEEEECTTCEEEECTTSCSSTTGGGEEEEECT
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCC--CCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC
T ss_conf             986589889988899997767846899999479687986665566--665410023589986202224665431389859


Q ss_pred             --CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             --38999818989999999999719
Q T0535           272 --ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 --~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                        ..+.|+|.|.+|++.|+.+|+.|
T Consensus        93 ~~~~~~~~a~s~~e~~~W~~ai~~~  117 (148)
T 1u5f_A           93 DKRIYQFTAASPKDAEEWVQQLKFI  117 (148)
T ss_dssp             TSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9719999469999999999999999


No 35 
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25  E-value=0.00066  Score=40.42  Aligned_cols=68  Identities=10%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             CCCEEEEEECC-EEEEEEEECCCEEEEEEEEEEC----CCCCCCCCEEEEEE-CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             42002565155-3799986148727875566412----25566760178870-838999818989999999999719
Q T0535           224 NRRPRHLFLND-VLLYTYPQKDGKYRLKNTLAVS----RPVEKVPYALKIET-SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       224 ~~~~~~fLf~D-~li~~k~~~~~~~~~~~~i~l~----~~~~~~~~~f~i~~-~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ..+.++|.+.+ .|.+.+ .....-.  ..+.+.    ....+.+++|.|.+ .+.++|+|.|.+|++.|+.+|++|
T Consensus        26 ~WkkR~fvL~~~~L~yy~-~~~~~~~--~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~f~a~s~~e~~~Wi~ai~~a   99 (114)
T 2da0_A           26 VWQRRKCSVKNGILTISH-ATSNRQP--AKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNS   99 (114)
T ss_dssp             CEEEEEEEEETTEEEECC-SSCCSCC--EEEETTTSEEEECSSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCEEEEEE-CCCCCCC--CCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             945889999487746864-2455663--2000000234223443103450379935999979999999999999999


No 36 
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=97.24  E-value=0.00065  Score=40.49  Aligned_cols=85  Identities=20%  Similarity=0.241  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECCC----------CCCCCCEEEEEE-CC
Q ss_conf             144543346431234---5420025651-55379998614872787556641225----------566760178870-83
Q T0535           208 PGREFLKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSRP----------VEKVPYALKIET-SE  272 (294)
Q Consensus       208 ~~r~~i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~~----------~~~~~~~f~i~~-~~  272 (294)
                      +....+++|.+...+   +....++|.+ .+.|.+.+...+  ....+.|++...          .....++|.|.+ .+
T Consensus        10 ~~~~v~k~G~L~K~~~~~k~Wkkr~~vL~~~~L~yy~~~~~--~~~~~~i~l~~~~~v~~~~~~~~~~~~~~f~i~~~~~   87 (125)
T 1eaz_A           10 QDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELE--KEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSR   87 (125)
T ss_dssp             --CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTC--SSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSC
T ss_pred             CCCCEEEEEEEEEECCCCCCEEEEEEEEECCEEEEEECCCC--CCCCEEEECCEEEEEEECCCCCCCCCCEEEEEECCCE
T ss_conf             99968899999996899998089999998999999953577--7761489611058998535444556752899851997


Q ss_pred             EEEEEECCHHHHHHHHHHHHHC
Q ss_conf             8999818989999999999719
Q T0535           273 SCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       273 ~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      .++|+|.|.+++..|+.+|++|
T Consensus        88 ~~~~~a~s~~e~~~W~~~i~~a  109 (125)
T 1eaz_A           88 TFYVQADSPEEMHSWIKAVSGA  109 (125)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHH
T ss_conf             9999949999999999999999


No 37 
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.22  E-value=0.0008  Score=39.93  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCCCCC----CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECCC---CCCCCCEEEEEE-CCEEEEEEC
Q ss_conf             44543346431234----5420025651-55379998614872787556641225---566760178870-838999818
Q T0535           209 GREFLKEGTLKVTG----KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSRP---VEKVPYALKIET-SESCLLSAS  279 (294)
Q Consensus       209 ~r~~i~~g~~~~~~----~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~~---~~~~~~~f~i~~-~~~~~l~a~  279 (294)
                      +...+++|.+...+    +..+.++|.+ ++.|.+.+...  ....+..|+|.+.   .....++|.|.+ ...+.|+|.
T Consensus         5 ~~~~vk~G~L~K~~~~~~k~Wk~R~fvL~~~~L~yy~~~~--~~~~~~~i~L~~~~~~~~~~~~~~~i~~~~~~~~~~a~   82 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK--EMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVE   82 (115)
T ss_dssp             CSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSC--CSSCCCEEETTTEEEEEEETTTEEEEEESSCCEEEECS
T ss_pred             CCCCEEEEEEEEECCCCCCCEEEEEEEEECCEEEEECCCC--CCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEC
T ss_conf             9998899999998999999806799999799695031657--33312465543345652068742577469914999989


Q ss_pred             CHHHHHHHHHHHHHC
Q ss_conf             989999999999719
Q T0535           280 SCAERDEWYGCLSRA  294 (294)
Q Consensus       280 s~~ek~~W~~~i~~A  294 (294)
                      |.+|...|+++|.+|
T Consensus        83 s~~e~~~W~~al~~a   97 (115)
T 2cod_A           83 KEEERNDWISILLNA   97 (115)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 38 
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.21  E-value=0.0013  Score=38.63  Aligned_cols=82  Identities=11%  Similarity=0.206  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCC---CCCCEEEEEECCEEEEEEEECCCEEEEEEEEEE-------CCCCCCCCCEEEEEEC--CEEEEEEC
Q ss_conf             43346431234---542002565155379998614872787556641-------2255667601788708--38999818
Q T0535           212 FLKEGTLKVTG---KNRRPRHLFLNDVLLYTYPQKDGKYRLKNTLAV-------SRPVEKVPYALKIETS--ESCLLSAS  279 (294)
Q Consensus       212 ~i~~g~~~~~~---~~~~~~~fLf~D~li~~k~~~~~~~~~~~~i~l-------~~~~~~~~~~f~i~~~--~~~~l~a~  279 (294)
                      .+++|.+...+   ++.+.++|.+.+-.++..+.... ......+++       ..+..+.+++|.|...  +.+.|+|.
T Consensus         8 ~~~~G~L~kk~~~~~~W~kr~~vL~~~~L~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~   86 (109)
T 1wgq_A            8 STMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASED-VAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKAD   86 (109)
T ss_dssp             CSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTC-SSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECS
T ss_pred             CCEEEEEEEECCCCCCCEEEEEEECCCEEEEECCCCC-CCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCEEEEEECC
T ss_conf             9589999998889998658999986998988737555-565411763015788530467762277898499879999869


Q ss_pred             CHHHHHHHHHHHHHC
Q ss_conf             989999999999719
Q T0535           280 SCAERDEWYGCLSRA  294 (294)
Q Consensus       280 s~~ek~~W~~~i~~A  294 (294)
                      |.+++..|+.+|..|
T Consensus        87 s~~e~~~Wi~al~~a  101 (109)
T 1wgq_A           87 DAHSTQRWIDAFQEG  101 (109)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 39 
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=97.18  E-value=0.00081  Score=39.90  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCCC-------CCCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECCC----------CCCCCCEEEEEEC
Q ss_conf             454334643123-------45420025651-55379998614872787556641225----------5667601788708
Q T0535           210 REFLKEGTLKVT-------GKNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSRP----------VEKVPYALKIETS  271 (294)
Q Consensus       210 r~~i~~g~~~~~-------~~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~~----------~~~~~~~f~i~~~  271 (294)
                      ...+++|.+...       .++.+.++|.+ .+.|.+.+...+.  ..++.|+|...          ...-+++|.|.+.
T Consensus       104 ~~~~k~GyL~K~~~~~~~~~k~Wkkr~fvL~~~~L~yyk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~k~~~F~i~~~  181 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK--QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAP  181 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCS--SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECS
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             77118999998768999766761178999989999984366553--2457412467179853554434689867999917


Q ss_pred             --CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             --38999818989999999999719
Q T0535           272 --ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 --~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                        +.|.|+|.|.++++.|+++|+.+
T Consensus       182 ~~r~~~f~A~s~~e~~~Wi~ai~~v  206 (211)
T 1u5e_A          182 DKRIYQFTAASPKDAEEWVQQLKFI  206 (211)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9808999759999999999999999


No 40 
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.16  E-value=0.0013  Score=38.65  Aligned_cols=81  Identities=32%  Similarity=0.420  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEE---------CCCCCCCCCEEEEEEC-------
Q ss_conf             43346431234---5420025651-55379998614872787556641---------2255667601788708-------
Q T0535           212 FLKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAV---------SRPVEKVPYALKIETS-------  271 (294)
Q Consensus       212 ~i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l---------~~~~~~~~~~f~i~~~-------  271 (294)
                      .+++|.+...+   ++.+.++|.+ ++.|.+.+......  .+..+++         .......+++|.+...       
T Consensus         8 ~~k~G~L~k~~~~~k~WkrR~fvL~~~~L~y~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~   85 (118)
T 1v89_A            8 PIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK--PQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM   85 (118)
T ss_dssp             EEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCS--CSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCS
T ss_pred             CEEEEEEEEECCCCCCCEEEEEEEECCEEEEEECCCCCC--CCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCEEC
T ss_conf             739999999889999836899999899999972435665--414898144679866224555676248996178750113


Q ss_pred             --CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             --38999818989999999999719
Q T0535           272 --ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 --~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                        ..++|+|.|.+|++.|+.+|.+|
T Consensus        86 ~~~~~~l~a~s~ee~~~Wi~aL~~a  110 (118)
T 1v89_A           86 GQDSYVLMASSQAEMEEWVKFLRRV  110 (118)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             8818999829999999999999999


No 41 
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=97.15  E-value=0.0027  Score=36.67  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCCCEEEEEE-CCEEEEEEEECCCEE-------EEEEEEEEC------CCCCCCCCEEEEEE---CCEEEEEECCHHHHH
Q ss_conf             5420025651-553799986148727-------875566412------25566760178870---838999818989999
Q T0535           223 KNRRPRHLFL-NDVLLYTYPQKDGKY-------RLKNTLAVS------RPVEKVPYALKIET---SESCLLSASSCAERD  285 (294)
Q Consensus       223 ~~~~~~~fLf-~D~li~~k~~~~~~~-------~~~~~i~l~------~~~~~~~~~f~i~~---~~~~~l~a~s~~ek~  285 (294)
                      ++.+.++|.+ .+.|.+.+.......       .....++|.      ......+++|.+..   ++.|.|+|.|.+|++
T Consensus        22 ~~WkkrwfvL~~~~L~yy~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~f~i~~~~~~~~~~f~A~s~~e~~  101 (126)
T 2dtc_A           22 SSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAI  101 (126)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCTTSTTEEEEECTTSCSEEEEECSSHHHHH
T ss_pred             CCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEECCCHHHHH
T ss_conf             87518999997999989717521233432101332435971135677114310012177612566629999629979999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999719
Q T0535           286 EWYGCLSRA  294 (294)
Q Consensus       286 ~W~~~i~~A  294 (294)
                      .|+.+|..|
T Consensus       102 ~Wi~ai~~a  110 (126)
T 2dtc_A          102 LWHKHLDDA  110 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 42 
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13  E-value=0.0019  Score=37.68  Aligned_cols=82  Identities=17%  Similarity=0.292  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCCC---CCCCEEEE-EECCEEEEEEEECCCEEEEEEEEEECC--------CCCCCCCEEEEEE-CCEEEEE
Q ss_conf             543346431234---54200256-515537999861487278755664122--------5566760178870-8389998
Q T0535           211 EFLKEGTLKVTG---KNRRPRHL-FLNDVLLYTYPQKDGKYRLKNTLAVSR--------PVEKVPYALKIET-SESCLLS  277 (294)
Q Consensus       211 ~~i~~g~~~~~~---~~~~~~~f-Lf~D~li~~k~~~~~~~~~~~~i~l~~--------~~~~~~~~f~i~~-~~~~~l~  277 (294)
                      ..+++|.+...+   +....++| |.++.|.+.+....  ...+..|+|..        .....++.|.+.. ...+.|+
T Consensus         7 ~v~k~G~L~k~~~~~~~Wkkr~~vL~~~~L~yy~~~~~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~   84 (115)
T 2dn6_A            7 GVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDL--KDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEIS   84 (115)
T ss_dssp             SCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTC--SSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEE
T ss_pred             CCEEEEEEEEECCCCCCCEEEEEEEECCEEEEEECCCC--CCCCEEEECCCCEEECCCCCCCCCCEEEEECCCCEEEEEE
T ss_conf             97799999997789999689999998999999945777--7652599821154202134323674366862799899998


Q ss_pred             ECCHHHHHHHHHHHHHC
Q ss_conf             18989999999999719
Q T0535           278 ASSCAERDEWYGCLSRA  294 (294)
Q Consensus       278 a~s~~ek~~W~~~i~~A  294 (294)
                      |.|.+|++.|+++|+.|
T Consensus        85 a~s~~e~~~W~~ai~~a  101 (115)
T 2dn6_A           85 ASDKKKKQEWIQAIHST  101 (115)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             79999999999999999


No 43 
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.13  E-value=0.0014  Score=38.51  Aligned_cols=81  Identities=22%  Similarity=0.351  Sum_probs=48.5

Q ss_pred             CCCCCCCCCC---CCCCCEEEE-EECCEEEEEEEECCCEEEEEEEEEEC------C--CCCCCCCEEEEEE--CCEEEEE
Q ss_conf             4334643123---454200256-51553799986148727875566412------2--5566760178870--8389998
Q T0535           212 FLKEGTLKVT---GKNRRPRHL-FLNDVLLYTYPQKDGKYRLKNTLAVS------R--PVEKVPYALKIET--SESCLLS  277 (294)
Q Consensus       212 ~i~~g~~~~~---~~~~~~~~f-Lf~D~li~~k~~~~~~~~~~~~i~l~------~--~~~~~~~~f~i~~--~~~~~l~  277 (294)
                      .+++|.+...   .++.+.++| |..+.|.+.+.....  .....|++.      .  .....+++|.|.+  +..+.|+
T Consensus         5 ~~keG~L~K~~~~~~~WkkRwfvL~~~~L~~y~~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~l~   82 (113)
T 1pls_A            5 RIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN--SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ   82 (113)
T ss_dssp             CSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCS--SCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEE
T ss_pred             CEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCC--CCCEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEEE
T ss_conf             66999999947999996678999918957988405777--7635880201069984466677336899993899799998


Q ss_pred             ECCHHHHHHHHHHHHHC
Q ss_conf             18989999999999719
Q T0535           278 ASSCAERDEWYGCLSRA  294 (294)
Q Consensus       278 a~s~~ek~~W~~~i~~A  294 (294)
                      |.|.+|++.|+.+|++|
T Consensus        83 a~s~~e~~~Wi~aI~~a   99 (113)
T 1pls_A           83 AAFLEERDAWVRDINKA   99 (113)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             69999999999999999


No 44 
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=97.12  E-value=0.0015  Score=38.17  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=45.2

Q ss_pred             CCCCCCCEEEEEECCEEEEEEEECCCEEEEEEEEEEC---------CCCCCCCCEEEEEE--CCEEEEEECCHHHHHHHH
Q ss_conf             2345420025651553799986148727875566412---------25566760178870--838999818989999999
Q T0535           220 VTGKNRRPRHLFLNDVLLYTYPQKDGKYRLKNTLAVS---------RPVEKVPYALKIET--SESCLLSASSCAERDEWY  288 (294)
Q Consensus       220 ~~~~~~~~~~fLf~D~li~~k~~~~~~~~~~~~i~l~---------~~~~~~~~~f~i~~--~~~~~l~a~s~~ek~~W~  288 (294)
                      +.++..+.++|.+.+-.|+.-+...+. ..+..+++.         ....+-+++|.+..  ...++|+|.|.++++.|+
T Consensus        15 ~~~~~Wk~r~~vL~~~~L~~y~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~Wi   93 (112)
T 3cxb_B           15 LGKEHWKTCFVVLSNGILYQYPDRTDV-IPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWM   93 (112)
T ss_dssp             SSCCCCEEEEEEEETTEEEEESSSSCC-SCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHH
T ss_pred             CCCCCCEEEEEEEECCEEEEEECCCCC-CCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEECCHHHHHHHH
T ss_conf             877885089999987969899514443-0013114643489985111023554025531345459999919999999999


Q ss_pred             HHHHHC
Q ss_conf             999719
Q T0535           289 GCLSRA  294 (294)
Q Consensus       289 ~~i~~A  294 (294)
                      .+|.+|
T Consensus        94 ~al~~a   99 (112)
T 3cxb_B           94 QHLCQA   99 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 45 
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.10  E-value=0.0017  Score=37.97  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             CCCCCEEEEEECCEEEEEEEECCC-----EEEEEEEEEECC-------CCCCCCCEEEEEE--CCEEEEEECCHHHHHHH
Q ss_conf             454200256515537999861487-----278755664122-------5566760178870--83899981898999999
Q T0535           222 GKNRRPRHLFLNDVLLYTYPQKDG-----KYRLKNTLAVSR-------PVEKVPYALKIET--SESCLLSASSCAERDEW  287 (294)
Q Consensus       222 ~~~~~~~~fLf~D~li~~k~~~~~-----~~~~~~~i~l~~-------~~~~~~~~f~i~~--~~~~~l~a~s~~ek~~W  287 (294)
                      .++.+.++|.+.+..|+..+....     .....+.|.+..       +...-+++|.|.+  +..|+|+|.|.++.+.|
T Consensus        36 ~r~Wk~rw~vL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~kr~~~f~i~~~~~~~~~f~a~s~~e~~~W  115 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENW  115 (263)
T ss_dssp             TCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred             CCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHH
T ss_conf             89873799999799999994766355666568875797366389988655677634878659982999976999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999719
Q T0535           288 YGCLSRA  294 (294)
Q Consensus       288 ~~~i~~A  294 (294)
                      +.+|+.|
T Consensus       116 i~ai~~a  122 (263)
T 3a8p_A          116 VTAIHSA  122 (263)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 46 
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.10  E-value=0.002  Score=37.49  Aligned_cols=71  Identities=20%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             CCCCEEEEEE---CCEEEEEEEECCC----EEEEEEEEEECC----------CCCCCCCEEEEEE-CCEEEEEECCHHHH
Q ss_conf             5420025651---5537999861487----278755664122----------5566760178870-83899981898999
Q T0535           223 KNRRPRHLFL---NDVLLYTYPQKDG----KYRLKNTLAVSR----------PVEKVPYALKIET-SESCLLSASSCAER  284 (294)
Q Consensus       223 ~~~~~~~fLf---~D~li~~k~~~~~----~~~~~~~i~l~~----------~~~~~~~~f~i~~-~~~~~l~a~s~~ek  284 (294)
                      ++.+.|+|.+   .+.|.+.+.....    ... ...+.+..          ......++|.|.+ ...+.|+|.|.+|+
T Consensus        30 k~wkrRwFvL~~~~~~L~Yy~~~~~~~~~g~~~-l~~i~l~~~~~~~~~~~~~~~~~~~~~~i~t~~r~~~l~A~s~~e~  108 (126)
T 1v5p_A           30 GKFLRRYFILDTQANCLLWYMDNPQNLAVGAGA-VGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDL  108 (126)
T ss_dssp             SCEEEEEEEEETTTTEEEEESSCTTTSCTTCCC-SEEEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEECSSHHHH
T ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCHHHH
T ss_conf             981588999975798289974143434222345-6753112332112123200246531578607980599978999999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999719
Q T0535           285 DEWYGCLSRA  294 (294)
Q Consensus       285 ~~W~~~i~~A  294 (294)
                      ..|+++|++|
T Consensus       109 ~~Wi~aL~~a  118 (126)
T 1v5p_A          109 KDWVEALNQA  118 (126)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 47 
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.07  E-value=0.00074  Score=40.14  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCCCCCCCC---CCCCEEEE-EECCEEEEEEEEC-CCEEEEEEEEEECCC---------------CCCCCCE
Q ss_conf             02144543346431234---54200256-5155379998614-872787556641225---------------5667601
Q T0535           206 LQPGREFLKEGTLKVTG---KNRRPRHL-FLNDVLLYTYPQK-DGKYRLKNTLAVSRP---------------VEKVPYA  265 (294)
Q Consensus       206 ~~~~r~~i~~g~~~~~~---~~~~~~~f-Lf~D~li~~k~~~-~~~~~~~~~i~l~~~---------------~~~~~~~  265 (294)
                      ....+..+++|.+...+   ++.+.|+| |.++.+.+..... ...-..+..+.+...               .....++
T Consensus        12 ~~~~~~v~k~G~L~K~~~~~k~Wk~RyfvL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~~~~   91 (129)
T 1x1g_A           12 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNL   91 (129)
T ss_dssp             CTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSC
T ss_pred             CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEE
T ss_conf             34789889999999987899997158999978952899986753423123258668889985123344444344453203


Q ss_pred             EEEEE--CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             78870--838999818989999999999719
Q T0535           266 LKIET--SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       266 f~i~~--~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      |.+..  ...+.|+|.|.+|++.|+++|++|
T Consensus        92 ~~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~  122 (129)
T 1x1g_A           92 FKVITKDDTHYYIQASSKAERAEWIEAIKKL  122 (129)
T ss_dssp             EEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             7887599839999889999999999999998


No 48 
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.06  E-value=0.0024  Score=36.95  Aligned_cols=85  Identities=15%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCCCC---CCCCEEEEEE-CC-EEEEEEEECCCEEEEE-----EEEEEC------C----CCCCCCCEEEEE
Q ss_conf             4543346431234---5420025651-55-3799986148727875-----566412------2----556676017887
Q T0535           210 REFLKEGTLKVTG---KNRRPRHLFL-ND-VLLYTYPQKDGKYRLK-----NTLAVS------R----PVEKVPYALKIE  269 (294)
Q Consensus       210 r~~i~~g~~~~~~---~~~~~~~fLf-~D-~li~~k~~~~~~~~~~-----~~i~l~------~----~~~~~~~~f~i~  269 (294)
                      ...+++|.+...+   ++.+.++|.+ .| .|.+.+........-.     ..+.+.      .    .....+++|.|.
T Consensus         6 ~~vik~G~L~K~~~~~k~WkkR~fvL~~~~~L~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~   85 (130)
T 2d9v_A            6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVN   85 (130)
T ss_dssp             CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEE
T ss_pred             CCCEEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf             99528999999899989962789999899128999571235667566115443887510157665146777776069994


Q ss_pred             EC--CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             08--38999818989999999999719
Q T0535           270 TS--ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       270 ~~--~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ..  ..+.|+|.|.+|++.|+.+|++|
T Consensus        86 ~~~~~~~~l~a~s~~e~~~Wv~al~~a  112 (130)
T 2d9v_A           86 LREGSRLHLCAETRDDAIAWKTALMEA  112 (130)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             478569999889999999999999998


No 49 
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=97.06  E-value=0.0011  Score=39.16  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=42.3

Q ss_pred             CCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC----------CCCCCCCEEEEEEC--CEEEEEECCHHHHHHHHHH
Q ss_conf             420025651-5537999861487278755664122----------55667601788708--3899981898999999999
Q T0535           224 NRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR----------PVEKVPYALKIETS--ESCLLSASSCAERDEWYGC  290 (294)
Q Consensus       224 ~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~----------~~~~~~~~f~i~~~--~~~~l~a~s~~ek~~W~~~  290 (294)
                      +...++|.+ ++.|.+.+....  ..-.+.+++..          ...+.+++|.|.+.  ..+.|+|.|.+|++.|+.+
T Consensus        22 ~Wkkr~fvL~~~~L~yy~~~~~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~Wi~a   99 (108)
T 1u5d_A           22 EWQKRWCVVSRGLFYYYANEKS--KQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQ   99 (108)
T ss_dssp             EEEEEEEEEETTEEEEESSTTC--SSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEEEEECCEEEEEECCCC--CCCCEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHH
T ss_conf             8469999998999999834677--65312487258567530000135677751268869982999991999999999999


Q ss_pred             HHHC
Q ss_conf             9719
Q T0535           291 LSRA  294 (294)
Q Consensus       291 i~~A  294 (294)
                      |++|
T Consensus       100 i~~~  103 (108)
T 1u5d_A          100 ISFL  103 (108)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999


No 50 
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.02  E-value=0.0018  Score=37.80  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCCC---CCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC--------CCCCCCCEEEEEE-CCEEEEEE
Q ss_conf             433464312345---420025651-5537999861487278755664122--------5566760178870-83899981
Q T0535           212 FLKEGTLKVTGK---NRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR--------PVEKVPYALKIET-SESCLLSA  278 (294)
Q Consensus       212 ~i~~g~~~~~~~---~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~--------~~~~~~~~f~i~~-~~~~~l~a  278 (294)
                      ..++|.+...+.   +.+.++|.+ .+.|.+.+...+..  .+..++|..        +....++.|.|.. .+.++|+|
T Consensus        18 ~~~~G~L~kk~~~~k~WkkRwfvL~~~~L~yY~~~~~~~--~~~~i~L~~~~~~~~~~~~~~~~~~F~l~t~~~~~~f~A   95 (149)
T 1x1f_A           18 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSII--YVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKT   95 (149)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSS--CSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEEC
T ss_pred             CCEEEEEEEECCCCCCEEEEEEEEECCEEEEEECCCCCC--CCCCCCCCCEEEEECCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf             337999998789999737889999899999985356565--311001334002101010146742565047863799992


Q ss_pred             CCHHHHHHHHHHHHHC
Q ss_conf             8989999999999719
Q T0535           279 SSCAERDEWYGCLSRA  294 (294)
Q Consensus       279 ~s~~ek~~W~~~i~~A  294 (294)
                      .|.+|+..|+.+|..|
T Consensus        96 es~~e~~~Wi~aI~~~  111 (149)
T 1x1f_A           96 ENTESGEEWRGFILTV  111 (149)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9999999999999998


No 51 
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=96.99  E-value=0.0028  Score=36.62  Aligned_cols=72  Identities=19%  Similarity=0.313  Sum_probs=45.8

Q ss_pred             CCCCEEEEEECCEEEEEEEECCCEE---EEEEEEEE-------CCCCCCCCCEEEEEEC-CEEEEEECCHHHHHHHHHHH
Q ss_conf             5420025651553799986148727---87556641-------2255667601788708-38999818989999999999
Q T0535           223 KNRRPRHLFLNDVLLYTYPQKDGKY---RLKNTLAV-------SRPVEKVPYALKIETS-ESCLLSASSCAERDEWYGCL  291 (294)
Q Consensus       223 ~~~~~~~fLf~D~li~~k~~~~~~~---~~~~~i~l-------~~~~~~~~~~f~i~~~-~~~~l~a~s~~ek~~W~~~i  291 (294)
                      +..+.++|.+.+-.|..-+......   .....|.+       .......+++|.|.+. ..++|+|.|.++.+.|+.+|
T Consensus        27 k~Wk~rwfVL~~~~L~yyk~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~l~~~~~~~~l~A~s~~e~~~Wi~aL  106 (168)
T 2j59_M           27 RPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTI  106 (168)
T ss_dssp             -CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCEEEEECCCHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHH
T ss_conf             87189999998999999625133123566530466456899861266776422799769988999769999999999999


Q ss_pred             HHC
Q ss_conf             719
Q T0535           292 SRA  294 (294)
Q Consensus       292 ~~A  294 (294)
                      +.|
T Consensus       107 ~~a  109 (168)
T 2j59_M          107 QES  109 (168)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 52 
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=96.99  E-value=0.0025  Score=36.91  Aligned_cols=80  Identities=23%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CCCCCCCCC---CCCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC-------CCCCCCCEEEEEE-CCEEEEEECC
Q ss_conf             334643123---45420025651-5537999861487278755664122-------5566760178870-8389998189
Q T0535           213 LKEGTLKVT---GKNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR-------PVEKVPYALKIET-SESCLLSASS  280 (294)
Q Consensus       213 i~~g~~~~~---~~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~-------~~~~~~~~f~i~~-~~~~~l~a~s  280 (294)
                      .++|.+...   .+....++|.+ ++.|.+.+....  ...++.++|..       ...+.+++|.|.+ +..++|+|.|
T Consensus        19 ~keG~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~--~~~~g~i~L~~~~~v~~~~~~~~~~~f~i~~~~r~~~~~a~s   96 (126)
T 1fao_A           19 TKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMS--PEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKT   96 (126)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTC--SSCSEEEEGGGCCEEEEECSSSSSSEEEEEETTEEEEEECSS
T ss_pred             CEEEEEEEECCCCCCEEEEEEEEECCEEEEECCCCC--CCCCCCEECCCCEEEEEECCCCCCCEEEEEECCEEEEEECCC
T ss_conf             779999982799998788999998999989755666--664351320361898640245676335761099699999299


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             89999999999719
Q T0535           281 CAERDEWYGCLSRA  294 (294)
Q Consensus       281 ~~ek~~W~~~i~~A  294 (294)
                      .+++..|+.+|+.|
T Consensus        97 ~~e~~~Wi~ai~~~  110 (126)
T 1fao_A           97 GVEADEWIKILRWK  110 (126)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 53 
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckstrin homology domain, coiled coil, guanine-nucleotide releasing factor; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=96.93  E-value=0.0019  Score=37.69  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             CCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECC------CCCCCCCEEEEEE------------
Q ss_conf             3346431234---5420025651-5537999861487278755664122------5566760178870------------
Q T0535           213 LKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSR------PVEKVPYALKIET------------  270 (294)
Q Consensus       213 i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~------~~~~~~~~f~i~~------------  270 (294)
                      .++|.+...+   ++++.|+|.+ ++.|.+.+.....  ..++.++|..      ...+.+++|.+.+            
T Consensus       214 ~~~G~L~K~g~~~k~WKrRwFVL~~~~L~Yyk~~~~~--~p~G~I~L~~~~V~~~~~~~~~~~f~i~~~~~~~~~~~~~~  291 (347)
T 2r09_A          214 DREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK--EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACK  291 (347)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCS--SCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEE
T ss_pred             CCEEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCC--CCCEEEECCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             7558678866888850579999908957897887776--78537766872899805778887079865766654332334


Q ss_pred             -----------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             -----------838999818989999999999719
Q T0535           271 -----------SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 -----------~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                                 ...|.|+|.|.+|++.|+++|+.|
T Consensus       292 ~~~~~~~~~~~~r~y~L~AeS~~e~~~WI~AI~~a  326 (347)
T 2r09_A          292 TEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS  326 (347)
T ss_dssp             ECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             44453132169769999897999999999999999


No 54 
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91  E-value=0.0011  Score=39.15  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCCCEEEEEECCEEEEEEEECCC-EEEEEEEEEEC-------CCCCCCCCEEEEEE-----CCEEEEEECCHHHHHHHHH
Q ss_conf             54200256515537999861487-27875566412-------25566760178870-----8389998189899999999
Q T0535           223 KNRRPRHLFLNDVLLYTYPQKDG-KYRLKNTLAVS-------RPVEKVPYALKIET-----SESCLLSASSCAERDEWYG  289 (294)
Q Consensus       223 ~~~~~~~fLf~D~li~~k~~~~~-~~~~~~~i~l~-------~~~~~~~~~f~i~~-----~~~~~l~a~s~~ek~~W~~  289 (294)
                      ++.+.++|.+.|-.|+.-+.... .-.....+.+.       ....+.+++|.+..     ...+.|+|.|.+|+++|++
T Consensus        26 k~WkkrwfvL~~~~L~yyks~~d~~~~p~~~i~L~~~~v~~~~~~~~~~~~f~l~~~~~~~~~~~~l~aese~e~~~Wi~  105 (137)
T 2ys3_A           26 KGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMA  105 (137)
T ss_dssp             SSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHH
T ss_conf             78447899998999999955654346844788536359975577666663299997437996699999099999999999


Q ss_pred             HHHHC
Q ss_conf             99719
Q T0535           290 CLSRA  294 (294)
Q Consensus       290 ~i~~A  294 (294)
                      +|..|
T Consensus       106 Al~~A  110 (137)
T 2ys3_A          106 GCRLA  110 (137)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99998


No 55 
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87  E-value=0.0013  Score=38.55  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECC--CEEEEEEEEEECCC----CCCCCCEEEEE--ECCEEEEEEC
Q ss_conf             43346431234---5420025651-553799986148--72787556641225----56676017887--0838999818
Q T0535           212 FLKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKD--GKYRLKNTLAVSRP----VEKVPYALKIE--TSESCLLSAS  279 (294)
Q Consensus       212 ~i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~--~~~~~~~~i~l~~~----~~~~~~~f~i~--~~~~~~l~a~  279 (294)
                      -+.+|.+...+   ++.+.|+|.+ +|.+++...+..  ..-..+..+++...    ..+.++.|.+.  +.+.+.|+|.
T Consensus         8 ~~k~G~L~K~~~~~k~WkkR~fvL~~~~~~l~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~   87 (120)
T 2d9x_A            8 ENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRAT   87 (120)
T ss_dssp             CCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEECCS
T ss_pred             CEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC
T ss_conf             80799999856898981488999957986598732544332243034344667997640564057999518809999959


Q ss_pred             CHHHHHHHHHHHHHC
Q ss_conf             989999999999719
Q T0535           280 SCAERDEWYGCLSRA  294 (294)
Q Consensus       280 s~~ek~~W~~~i~~A  294 (294)
                      |.+|++.|+.+|+.|
T Consensus        88 s~~e~~~Wi~al~~a  102 (120)
T 2d9x_A           88 DAKERQHWVSRLQIC  102 (120)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 56 
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.86  E-value=0.0056  Score=34.77  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCC---CCCCEEEEEE--CCEEEEEEEECCCEEEEEEEEEECC--------CC------CCCCCEEEEE-E
Q ss_conf             543346431234---5420025651--5537999861487278755664122--------55------6676017887-0
Q T0535           211 EFLKEGTLKVTG---KNRRPRHLFL--NDVLLYTYPQKDGKYRLKNTLAVSR--------PV------EKVPYALKIE-T  270 (294)
Q Consensus       211 ~~i~~g~~~~~~---~~~~~~~fLf--~D~li~~k~~~~~~~~~~~~i~l~~--------~~------~~~~~~f~i~-~  270 (294)
                      ..+++|.+...+   ++.+.++|.+  ++..++........ ..++.|++..        ..      ....+.|.+. +
T Consensus         7 ~~~~eG~L~K~~~~~k~Wkkr~fvL~~~~~~l~~~~~~~~~-~~~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~   85 (117)
T 1v5u_A            7 GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDT-ECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT   85 (117)
T ss_dssp             SSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCS-SCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES
T ss_pred             CCEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCHH-CCCCEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf             97289999988899999328999993778768874351000-02350552664798404653101113564248997249


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             838999818989999999999719
Q T0535           271 SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 ~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ++.+.|+|.|.+|++.|+++|++|
T Consensus        86 ~~~~~~~a~s~~e~~~Wi~~l~~a  109 (117)
T 1v5u_A           86 RRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             947999829999999999999999


No 57 
>2dhi_A Evectin-2, pleckstrin homology domain-containing family B member 2; PH domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.83  E-value=0.0032  Score=36.23  Aligned_cols=85  Identities=19%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECCCE-----EEE-EEEEEE---C-------CCCCCCCCEEEEE
Q ss_conf             4543346431234---5420025651-55379998614872-----787-556641---2-------2556676017887
Q T0535           210 REFLKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKDGK-----YRL-KNTLAV---S-------RPVEKVPYALKIE  269 (294)
Q Consensus       210 r~~i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~~~-----~~~-~~~i~l---~-------~~~~~~~~~f~i~  269 (294)
                      ...+++|.+...+   +..+.++|.+ .|.+++........     ... ...+.+   .       ....+.+++|.|.
T Consensus         6 ~~~ik~G~L~k~~~~~k~WkkRwfvL~~~~~l~y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~   85 (120)
T 2dhi_A            6 SGFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGHECRDIQPPDGKPRDCLLQIV   85 (120)
T ss_dssp             CCCSCEEEEEEECTTTCSEEEEEEEECTTSCEEEESSTTCCSCCEEECTTTTEEEEECGGGSCSCCCCTTCCSTTEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             99608999999799989963889999499679997784654215504135305898621112022233457877279999


Q ss_pred             EC--CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             08--38999818989999999999719
Q T0535           270 TS--ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       270 ~~--~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +.  ..++|+|.|.+|++.|+++|.+|
T Consensus        86 ~~~~~~~~~~a~s~~e~~~Wi~al~~a  112 (120)
T 2dhi_A           86 CRDGKTISLCAESTDDCLAWKFTLQDS  112 (120)
T ss_dssp             ESSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ECCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             348759999829999999999999998


No 58 
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=96.82  E-value=0.002  Score=37.44  Aligned_cols=85  Identities=22%  Similarity=0.288  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCC---CCCCCEEEEEEC-CEEEEEEEECCCEEEEEEEEEECC------------CCCCCCCEEEEEE--C
Q ss_conf             454334643123---454200256515-537999861487278755664122------------5566760178870--8
Q T0535           210 REFLKEGTLKVT---GKNRRPRHLFLN-DVLLYTYPQKDGKYRLKNTLAVSR------------PVEKVPYALKIET--S  271 (294)
Q Consensus       210 r~~i~~g~~~~~---~~~~~~~~fLf~-D~li~~k~~~~~~~~~~~~i~l~~------------~~~~~~~~f~i~~--~  271 (294)
                      +..+++|.+...   .++.+.++|.+. +.+.+........-..+..|++..            .....+++|.+..  .
T Consensus        16 g~v~k~G~L~K~~~~~k~WkkR~fvL~~~~l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (129)
T 1x05_A           16 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   95 (129)
T ss_dssp             SEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTC
T ss_pred             CCEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             98899989997189999952699999348656888612335552332775114752125642212356773578980798


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             38999818989999999999719
Q T0535           272 ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 ~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ..+.|+|.|.+|++.|+++|..|
T Consensus        96 ~~~~~~a~s~~e~~~W~~~i~~a  118 (129)
T 1x05_A           96 VHYFLQAATPKERTEWIKAIQMA  118 (129)
T ss_dssp             CCCEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHH
T ss_conf             09999879999999999999999


No 59 
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=96.82  E-value=0.0026  Score=36.78  Aligned_cols=82  Identities=11%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             CCCCCCCCC---CCCCCEEEEEECCEEE-EEEEECC-------CEEEEEEEEEEC--------CCCCCCCCEEEEEEC--
Q ss_conf             334643123---4542002565155379-9986148-------727875566412--------255667601788708--
Q T0535           213 LKEGTLKVT---GKNRRPRHLFLNDVLL-YTYPQKD-------GKYRLKNTLAVS--------RPVEKVPYALKIETS--  271 (294)
Q Consensus       213 i~~g~~~~~---~~~~~~~~fLf~D~li-~~k~~~~-------~~~~~~~~i~l~--------~~~~~~~~~f~i~~~--  271 (294)
                      .++|.+...   .+..+.|+|.+.+-.| +.+....       ........+++.        .+....+++|.|.+.  
T Consensus        13 ~k~G~L~kk~~~~k~WkkR~fvL~~~~L~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~F~i~~~~~   92 (124)
T 2w2x_D           13 KQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQQ   92 (124)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC-
T ss_pred             CEEEEEEEECCCCCCEEEEEEEEECCEEEEEECCCCCCCEEECCCCCCEEECCCCCCCCCEEEECCCCCCCEEEEEECCC
T ss_conf             57999997379999868989999999988974136530000002332100001246531100000356541378751367


Q ss_pred             --CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             --38999818989999999999719
Q T0535           272 --ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 --~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                        ..+.|+|.|.+|+.+|+.+|.+|
T Consensus        93 ~~r~~~~~A~s~~e~~~Wi~aI~~a  117 (124)
T 2w2x_D           93 GDPPVEFATDKVEELFEWFQSIREI  117 (124)
T ss_dssp             -CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             7469999869999999999999999


No 60 
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79  E-value=0.0034  Score=36.11  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=44.4

Q ss_pred             CCCCCCCCCC-----CCCCCEEEEEECC-------EEEEEEEECCC--EEEEEEEEEECC-----------CCCCCCCEE
Q ss_conf             4334643123-----4542002565155-------37999861487--278755664122-----------556676017
Q T0535           212 FLKEGTLKVT-----GKNRRPRHLFLND-------VLLYTYPQKDG--KYRLKNTLAVSR-----------PVEKVPYAL  266 (294)
Q Consensus       212 ~i~~g~~~~~-----~~~~~~~~fLf~D-------~li~~k~~~~~--~~~~~~~i~l~~-----------~~~~~~~~f  266 (294)
                      .+++|.+...     .+..+.|+|.+.+       .|-+.+.....  .-..+..|+|..           ......++|
T Consensus        12 ~vk~G~L~K~~~~~~~k~WkkRwfvL~~~~~~~~~~L~yy~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~F   91 (127)
T 2d9w_A           12 AVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAF   91 (127)
T ss_dssp             SSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCEEE
T ss_pred             CEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             05998999725788888767999999277446411567981754345244306789872530122245323577875289


Q ss_pred             EEEECCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             8870838999818989999999999719
Q T0535           267 KIETSESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       267 ~i~~~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      .|.+.+...+.|.+.+|++.|+.+|++|
T Consensus        92 ~i~t~~r~~~~aa~~ee~~~Wi~al~~~  119 (127)
T 2d9w_A           92 FLETKERLYLLAAPAAERGDWVQAICLL  119 (127)
T ss_dssp             EEEESSCEEEEEECHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             9996998999847969999999999998


No 61 
>2kcj_A Pleckstrin homology domain-containing family A member 3; FAPP1, PH domain, cytoplasm, lipid-binding, membrane, membrane protein; NMR {Homo sapiens}
Probab=96.79  E-value=0.0012  Score=38.76  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=46.4

Q ss_pred             CCCCCCCCCC---CCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEEC----CCCCCCCCEEEEEE--CCEEEEEECCHH
Q ss_conf             3346431234---5420025651-553799986148727875566412----25566760178870--838999818989
Q T0535           213 LKEGTLKVTG---KNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVS----RPVEKVPYALKIET--SESCLLSASSCA  282 (294)
Q Consensus       213 i~~g~~~~~~---~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~----~~~~~~~~~f~i~~--~~~~~l~a~s~~  282 (294)
                      ..+|.+...+   ++.+.++|.+ ++.|.+.+............+.+.    ......++.|.+..  .+.+.|+|.|.+
T Consensus         8 ~~eG~L~Kr~~~~k~WkkR~fvL~~~~L~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~r~~~~~a~s~~   87 (108)
T 2kcj_A            8 FMEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAA   87 (108)
T ss_dssp             CEEEEEEEECCTTTCEEEEEEEEETTEEEEESSHHHHHHCCSCEEEGGGSEEECCSCCSSEEEEECTTTCCEEEECSSHH
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCEEECCCEEEEECCCCCCCEEEEECCCEEEEEECCCHH
T ss_conf             67999997828999900189999899999996376564442010312205774001555315999759949999869999


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999719
Q T0535           283 ERDEWYGCLSRA  294 (294)
Q Consensus       283 ek~~W~~~i~~A  294 (294)
                      +++.|+.+|+.|
T Consensus        88 e~~~Wi~ai~~a   99 (108)
T 2kcj_A           88 ERQRWLVALGSS   99 (108)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 62 
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.77  E-value=0.0031  Score=36.29  Aligned_cols=81  Identities=26%  Similarity=0.326  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCC--CCCCEEEEEECC-EEEEEEEECCCEEEEEEEEEEC------CCCCCCCCEEEEEE------------
Q ss_conf             43346431234--542002565155-3799986148727875566412------25566760178870------------
Q T0535           212 FLKEGTLKVTG--KNRRPRHLFLND-VLLYTYPQKDGKYRLKNTLAVS------RPVEKVPYALKIET------------  270 (294)
Q Consensus       212 ~i~~g~~~~~~--~~~~~~~fLf~D-~li~~k~~~~~~~~~~~~i~l~------~~~~~~~~~f~i~~------------  270 (294)
                      .+++|.++..+  ++.+.|+|.+.+ .|.+.+....  -...+.|+|.      .+....+++|.+..            
T Consensus         8 ~~k~GwLkkr~~~k~WkrR~fvL~~~~L~yy~~~~~--~~~~g~i~L~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (130)
T 1v88_A            8 IVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKN--GQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGP   85 (130)
T ss_dssp             CCEEEEEEECCSSSSCEEEEEEEETTEEEEESCSSS--CCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCT
T ss_pred             CEEEEEEEECCCCCCCEEEEEEEECCEEEEECCCCC--CCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             649808997998998138899996999979857886--653452115875999866567885289986887520112566


Q ss_pred             -------------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             -------------838999818989999999999719
Q T0535           271 -------------SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       271 -------------~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                                   ...++|+|.|.+|+..|+++|+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~a  122 (130)
T 1v88_A           86 KGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA  122 (130)
T ss_dssp             TSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             5555315886179889999889999999999999999


No 63 
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=96.74  E-value=0.0045  Score=35.33  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             CCCCCCEEEEEE--CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             566760178870--838999818989999999999719
Q T0535           259 VEKVPYALKIET--SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       259 ~~~~~~~f~i~~--~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ....+++|.+.+  ...++|+|.|.+|+..|+++|+.|
T Consensus        85 ~~~~~~~f~~~~~~~~~~~~~a~s~~e~~~Wv~al~~a  122 (129)
T 2p0d_A           85 LSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV  122 (129)
T ss_dssp             SCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             57764289875379829999879999999999999999


No 64 
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.67  E-value=0.0058  Score=34.65  Aligned_cols=32  Identities=13%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             CCEEEEE-ECCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             6017887-0838999818989999999999719
Q T0535           263 PYALKIE-TSESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       263 ~~~f~i~-~~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      .+.|.+. ....+.|+|.|.+|++.|+++|++|
T Consensus        76 ~~~~~i~~~~~~~~f~A~s~~e~~~Wv~al~~a  108 (126)
T 1wi1_A           76 RAFFNAVKEGDTVIFASDDEQDRILWVQAMYRA  108 (126)
T ss_dssp             SSEEEEECSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             035884279859999969999999999999999


No 65 
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.67  E-value=0.0019  Score=37.67  Aligned_cols=34  Identities=6%  Similarity=0.250  Sum_probs=28.7

Q ss_pred             CCCCEEEEEEC--CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             67601788708--38999818989999999999719
Q T0535           261 KVPYALKIETS--ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       261 ~~~~~f~i~~~--~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +-+|+|.|.+.  ..|.|+|.|.+|++.|+.+|+.|
T Consensus        93 ~~~~~F~i~t~~~~~y~~~A~s~~e~~~Wv~ai~~a  128 (136)
T 1v5m_A           93 EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC  128 (136)
T ss_dssp             CCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             776479998589968999859999999999999999


No 66 
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 1p6s_A
Probab=96.64  E-value=0.0063  Score=34.44  Aligned_cols=84  Identities=25%  Similarity=0.373  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCCCC---CCCCEEEEEE-CC-EEEEEEEECCCE----EEEEEEEEEC-----CCCCCCCCEEEEEEC----
Q ss_conf             4543346431234---5420025651-55-379998614872----7875566412-----255667601788708----
Q T0535           210 REFLKEGTLKVTG---KNRRPRHLFL-ND-VLLYTYPQKDGK----YRLKNTLAVS-----RPVEKVPYALKIETS----  271 (294)
Q Consensus       210 r~~i~~g~~~~~~---~~~~~~~fLf-~D-~li~~k~~~~~~----~~~~~~i~l~-----~~~~~~~~~f~i~~~----  271 (294)
                      ...+++|.+...+   ++.+.|+|.+ .| .+++.+......    ..+ ..+.+.     ....+.+++|.|.+.    
T Consensus         6 ~~v~keG~L~K~~~~~k~Wk~RwfvL~~~~~l~~y~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~   84 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPL-NNFSVAQCQLMKTERPRPNTFIIRCLQWTT   84 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCS-EEEECTTCEEEEECSSSTTEEEEEEEETTE
T ss_pred             CCEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             9799999999989999996788999968922899826887764553034-305760221001432477239999547666


Q ss_pred             -CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             -38999818989999999999719
Q T0535           272 -ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       272 -~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                       ..++|+|.|.+|++.|+.+|+.|
T Consensus        85 ~~~~~f~a~s~~e~~~Wv~ai~~~  108 (125)
T 1unq_A           85 VIERTFHVETPEEREEWTTAIQTV  108 (125)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             205999909999999999999999


No 67 
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.60  E-value=0.0037  Score=35.86  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCC---CCCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECCC-------------CCCCCCEEEEEEC-C
Q ss_conf             54334643123---45420025651-55379998614872787556641225-------------5667601788708-3
Q T0535           211 EFLKEGTLKVT---GKNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSRP-------------VEKVPYALKIETS-E  272 (294)
Q Consensus       211 ~~i~~g~~~~~---~~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~~-------------~~~~~~~f~i~~~-~  272 (294)
                      ..+++|.+...   .+..+.|+|.+ .+.|.+.+.....  ..++.|+|...             ..+.+++|.|.+. .
T Consensus         7 ~vik~GwL~K~~~~~k~WkrRwFvL~~~~L~Yyk~~~~~--~~~g~I~L~~~~~V~~~~~~~~~~~~~~~~~F~I~T~~r   84 (125)
T 2coa_A            7 GTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTN--RYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANA   84 (125)
T ss_dssp             SCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCS--SCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSC
T ss_pred             CCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEECCCCCC--CCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             853888459987899871589999972144464367655--546521331000000244434445567723899961892


Q ss_pred             EEEEEE-----------CCHHHHHHHHHHHHHC
Q ss_conf             899981-----------8989999999999719
Q T0535           273 SCLLSA-----------SSCAERDEWYGCLSRA  294 (294)
Q Consensus       273 ~~~l~a-----------~s~~ek~~W~~~i~~A  294 (294)
                      .|.++|           .+.+++..|+++|.+|
T Consensus        85 ~Y~~~~~~~~~~~~~~~~~~~~~~~W~~aI~~A  117 (125)
T 2coa_A           85 TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  117 (125)
T ss_dssp             CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             089865887666554345869999999999998


No 68 
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=96.58  E-value=0.016  Score=32.05  Aligned_cols=73  Identities=18%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             CCCCCEEEEEEC-CEEEEEEEECC----------CEEEEEEE-EEECCCCCCCCCEEEEEE--CCEEEEEECCHHHHHHH
Q ss_conf             454200256515-53799986148----------72787556-641225566760178870--83899981898999999
Q T0535           222 GKNRRPRHLFLN-DVLLYTYPQKD----------GKYRLKNT-LAVSRPVEKVPYALKIET--SESCLLSASSCAERDEW  287 (294)
Q Consensus       222 ~~~~~~~~fLf~-D~li~~k~~~~----------~~~~~~~~-i~l~~~~~~~~~~f~i~~--~~~~~l~a~s~~ek~~W  287 (294)
                      .+..+.++|.+. +.|.+.+...+          +.+.+... +....+....+++|.+..  +..+.|+|.|.+|++.|
T Consensus        20 ~k~W~~r~fvL~~~~L~~y~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W   99 (106)
T 1btn_A           20 SRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTW   99 (106)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred             CCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHH
T ss_conf             89976999999699888996133212466647532597046088851345677648997517982999986999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999719
Q T0535           288 YGCLSRA  294 (294)
Q Consensus       288 ~~~i~~A  294 (294)
                      +.+|+.|
T Consensus       100 ~~ai~~A  106 (106)
T 1btn_A          100 IQAISSA  106 (106)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHC
T ss_conf             9999749


No 69 
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=96.44  E-value=0.01  Score=33.19  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEEC-CEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             667601788708-38999818989999999999719
Q T0535           260 EKVPYALKIETS-ESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       260 ~~~~~~f~i~~~-~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ...+++|.|.+. +.+.|+|.|.+|++.|+.+|++|
T Consensus        75 ~k~~~~f~I~T~~r~~~L~AeSe~e~~~Wv~aL~~~  110 (264)
T 1qqg_A           75 SKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQL  110 (264)
T ss_dssp             SSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             777439999719918999909999999999999999


No 70 
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.37  E-value=0.0061  Score=34.55  Aligned_cols=72  Identities=18%  Similarity=0.186  Sum_probs=42.7

Q ss_pred             CCCCEEEEEEC-CEEEEEEEECC----CEEEEEEEEE-------ECCCCCCCCCEEEEEE--CCEEEEEECCHHHHHHHH
Q ss_conf             54200256515-53799986148----7278755664-------1225566760178870--838999818989999999
Q T0535           223 KNRRPRHLFLN-DVLLYTYPQKD----GKYRLKNTLA-------VSRPVEKVPYALKIET--SESCLLSASSCAERDEWY  288 (294)
Q Consensus       223 ~~~~~~~fLf~-D~li~~k~~~~----~~~~~~~~i~-------l~~~~~~~~~~f~i~~--~~~~~l~a~s~~ek~~W~  288 (294)
                      +..+.++|.+. +.|.+.+....    +.......+.       ......+.+++|.+..  +..++|+|.|.+|++.|+
T Consensus        30 k~WkkrwfvL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~s~~e~~~Wi  109 (123)
T 1wjm_A           30 RSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWL  109 (123)
T ss_dssp             CCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHH
T ss_pred             CCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHH
T ss_conf             88559999998998756606433222244123343323414888676557775389997479829999889999999999


Q ss_pred             HHHHHC
Q ss_conf             999719
Q T0535           289 GCLSRA  294 (294)
Q Consensus       289 ~~i~~A  294 (294)
                      ++|+.|
T Consensus       110 ~al~~a  115 (123)
T 1wjm_A          110 RVVNAA  115 (123)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 71 
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=96.33  E-value=0.003  Score=36.44  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=45.1

Q ss_pred             CCCCCEEEEEECCEEEEEEEECCC-----EEEEEEEEEEC-------CCCCCCCCEEEEEEC--CEEEEEECCHHHHHHH
Q ss_conf             454200256515537999861487-----27875566412-------255667601788708--3899981898999999
Q T0535           222 GKNRRPRHLFLNDVLLYTYPQKDG-----KYRLKNTLAVS-------RPVEKVPYALKIETS--ESCLLSASSCAERDEW  287 (294)
Q Consensus       222 ~~~~~~~~fLf~D~li~~k~~~~~-----~~~~~~~i~l~-------~~~~~~~~~f~i~~~--~~~~l~a~s~~ek~~W  287 (294)
                      .++++.++|.+.+-.|+..+....     .....+.|.+.       .+....+++|.|.+.  ..|+|+|.|.+|+..|
T Consensus        36 ~k~Wk~rwfvL~~~~L~yy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~~~~~~~~~~~f~A~s~~e~~~W  115 (279)
T 3a8n_A           36 RRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENW  115 (279)
T ss_dssp             CCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHH
T ss_pred             CCCCEEEEEEEECCEEEEEECCHHCCCCCCCCCCCEEECCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHH
T ss_conf             88761899999799999995510115666667764797463699988777777536887759984899974999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999719
Q T0535           288 YGCLSRA  294 (294)
Q Consensus       288 ~~~i~~A  294 (294)
                      +.+|..|
T Consensus       116 v~al~~~  122 (279)
T 3a8n_A          116 ITAIHSA  122 (279)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 72 
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=96.26  E-value=0.0042  Score=35.51  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=28.1

Q ss_pred             CCCCEEEEEE-------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             6760178870-------838999818989999999999719
Q T0535           261 KVPYALKIET-------SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       261 ~~~~~f~i~~-------~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +.+++|.+.+       ...++|+|.|.+|++.|+++|.+|
T Consensus        73 ~~~~~f~i~~~~~~~~~~~~~~l~A~s~~e~~~Wv~aL~~~  113 (117)
T 2rov_A           73 EIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK  113 (117)
T ss_dssp             TGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             67734898632321378726999849999999999999998


No 73 
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=96.18  E-value=0.018  Score=31.67  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             ECCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             0838999818989999999999719
Q T0535           270 TSESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       270 ~~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      +...+.++|.|.+|+..|+++|..|
T Consensus        94 ~~~~~~~~a~s~~e~~~Wi~aL~~a  118 (127)
T 1fgy_A           94 NHVVYRISAPSPEEKEEWMKSIKAS  118 (127)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9729999869999999999999999


No 74 
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.04  E-value=0.015  Score=32.22  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCC---CCCCCEEEEEE-CCEEEEEEEECCCEEEEEEEEEECCC-------------CCCCCCEEEEEECC-
Q ss_conf             54334643123---45420025651-55379998614872787556641225-------------56676017887083-
Q T0535           211 EFLKEGTLKVT---GKNRRPRHLFL-NDVLLYTYPQKDGKYRLKNTLAVSRP-------------VEKVPYALKIETSE-  272 (294)
Q Consensus       211 ~~i~~g~~~~~---~~~~~~~~fLf-~D~li~~k~~~~~~~~~~~~i~l~~~-------------~~~~~~~f~i~~~~-  272 (294)
                      ..+++|.+...   .+..+.|+|.+ .+.|.+.+...+.  ..++.|+|...             ....+++|.|.+.+ 
T Consensus         7 ~iik~GwL~K~~~~~~~Wk~RwFvL~~~~L~Yy~~~~~~--~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~t~~r   84 (129)
T 2d9z_A            7 GMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGS--KYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTM   84 (129)
T ss_dssp             TSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCC--SCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSSC
T ss_pred             CCEEEEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCC--CCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCE
T ss_conf             715878479988898760689999963836995345877--735741212013210135655455667645899714760


Q ss_pred             EEEE---------------EECCHHHHHHHHHHHHHC
Q ss_conf             8999---------------818989999999999719
Q T0535           273 SCLL---------------SASSCAERDEWYGCLSRA  294 (294)
Q Consensus       273 ~~~l---------------~a~s~~ek~~W~~~i~~A  294 (294)
                      .|.+               .|.+.++...|+++|.+|
T Consensus        85 ~y~~~~~~~~~~~~~~~~l~a~~~~~~~~W~~AI~~A  121 (129)
T 2d9z_A           85 VYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQA  121 (129)
T ss_dssp             EEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             5898636777667732540248989999999999997


No 75 
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=95.40  E-value=0.018  Score=31.68  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=27.4

Q ss_pred             CCCEEEEEE--CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             760178870--838999818989999999999719
Q T0535           262 VPYALKIET--SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       262 ~~~~f~i~~--~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ..++|.+..  +..+.|+|.|.+|++.|+++|++|
T Consensus        88 ~~~~f~i~~~~~r~~~~~A~s~ee~~~Wi~al~~a  122 (128)
T 2rlo_A           88 ENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQ  122 (128)
T ss_dssp             CCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             67458998489968999939999999999999999


No 76 
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=94.92  E-value=0.027  Score=30.59  Aligned_cols=73  Identities=14%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             CCCCCEEEEEECC-EEEEEEEEC----CCEEEEE--E-------EEEECCCCCCCCCEEEEEE--CCEEEEEECCHHHHH
Q ss_conf             4542002565155-379998614----8727875--5-------6641225566760178870--838999818989999
Q T0535           222 GKNRRPRHLFLND-VLLYTYPQK----DGKYRLK--N-------TLAVSRPVEKVPYALKIET--SESCLLSASSCAERD  285 (294)
Q Consensus       222 ~~~~~~~~fLf~D-~li~~k~~~----~~~~~~~--~-------~i~l~~~~~~~~~~f~i~~--~~~~~l~a~s~~ek~  285 (294)
                      .+....++|.+.+ .|.+.+...    .+...+.  .       .+....+....++.|.+..  +..+.|+|.|.+|+.
T Consensus        29 ~k~W~kry~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~A~s~~d~~  108 (122)
T 1dro_A           29 NRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMS  108 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHHH
T ss_pred             CCCCEEEEEEEECCEEEEECCCCCCCCCCCCEECCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEECCCHHHHH
T ss_conf             89860899999899999982722232268510045214752774698633356666338998699969999879999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999719
Q T0535           286 EWYGCLSRA  294 (294)
Q Consensus       286 ~W~~~i~~A  294 (294)
                      .|+.+|+.|
T Consensus       109 ~Wv~ai~~~  117 (122)
T 1dro_A          109 QWVTSLKAQ  117 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 77 
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=87.18  E-value=0.86  Score=21.39  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEEEC---CEEEEEECCHHHHHHHHHHHHH
Q ss_conf             5667601788708---3899981898999999999971
Q T0535           259 VEKVPYALKIETS---ESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       259 ~~~~~~~f~i~~~---~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      .+..+++|++.+.   .+++|+|.+..+-..|+++|+-
T Consensus       137 ~D~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aIhs  174 (178)
T 2adz_A          137 TDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQA  174 (178)
T ss_dssp             SCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf             99876668997479973579980987999999999987


No 78 
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=83.52  E-value=1.5  Score=19.83  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             CCCCEEEEEE---CCEEEEEECCHHHHHHHHHHHH
Q ss_conf             6760178870---8389998189899999999997
Q T0535           261 KVPYALKIET---SESCLLSASSCAERDEWYGCLS  292 (294)
Q Consensus       261 ~~~~~f~i~~---~~~~~l~a~s~~ek~~W~~~i~  292 (294)
                      ..+++|.|..   ..++-|.|.|.++++.|+..|.
T Consensus        83 ~~~~~Fsiv~~~~~rtLdL~a~~~~~~~~Wv~gL~  117 (131)
T 1mai_A           83 PEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLR  117 (131)
T ss_dssp             CGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             84537999985898379999899999999999999


No 79 
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=60.93  E-value=5.7  Score=16.39  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             EEEECCCEEEEEEEEEECCCC-----CCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             986148727875566412255-----6676017887083899981898999999999971
Q T0535           239 TYPQKDGKYRLKNTLAVSRPV-----EKVPYALKIETSESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       239 ~k~~~~~~~~~~~~i~l~~~~-----~~~~~~f~i~~~~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      ++.+.+|.|.+...++|.+..     ...+..|.+.-++.|..+|.|..||...+..|.+
T Consensus        86 ~k~N~ngtfsiGKTW~L~ELk~Id~~~~~~~gF~Ltl~K~YyW~a~s~kEr~~Fi~sLvK  145 (171)
T 3hie_A           86 ARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLIT  145 (171)
T ss_dssp             EEECTTSCEEEEEEEEGGGCCEEEECSSCTTEEEEESSSEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECCCCCEEECCEECHHHHHHHHCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHH
T ss_conf             331689857735683278825443535899867999587479965877888999999999


No 80 
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=54.64  E-value=7.2  Score=15.74  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=24.1

Q ss_pred             CCEEEEEE----CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             60178870----838999818989999999999719
Q T0535           263 PYALKIET----SESCLLSASSCAERDEWYGCLSRA  294 (294)
Q Consensus       263 ~~~f~i~~----~~~~~l~a~s~~ek~~W~~~i~~A  294 (294)
                      ++.|.|.+    ...+-+.|.|.||-..|+..|..|
T Consensus       111 ~~vf~i~~~~~~~~~levAa~s~Eel~eW~~~Irea  146 (150)
T 2fjl_A          111 LFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREV  146 (150)
T ss_dssp             SCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf             489997579888844676504299999999999999


No 81 
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinase substrate; HGS, ESCRT, ubiquitin, MVB, cytoplasm, endosome, membrane, metal-binding, phosphoprotein; 2.30A {Homo sapiens}
Probab=38.02  E-value=13  Score=14.14  Aligned_cols=53  Identities=9%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999768-9999999998731024566789889988712888999998999999998
Q T0535            16 KAYVELQ-HLNLDFHGAVRALDDDHEDTLAREELRQGLSELPAIHDLHQGILEELEE   71 (294)
Q Consensus        16 ~~Yv~~l-~l~~~~~~~l~~~~~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~   71 (294)
                      +.|++.+ .-++.|...++.-.....++.....+.+||.++...   |..+++-++.
T Consensus         3 e~f~~~l~~qVeifvNRmkSnssRGRsi~nDs~VQtLF~~lt~m---H~qLL~~i~~   56 (98)
T 3f1i_H            3 EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGM---HPQLLELLNQ   56 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf             78999999999999999885000587775447899999999987---8999999999


No 82 
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=24.02  E-value=23  Score=12.68  Aligned_cols=53  Identities=19%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             EECCCEEEEEEEEEECCCC--C---CCCCEEEEEECCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             6148727875566412255--6---676017887083899981898999999999971
Q T0535           241 PQKDGKYRLKNTLAVSRPV--E---KVPYALKIETSESCLLSASSCAERDEWYGCLSR  293 (294)
Q Consensus       241 ~~~~~~~~~~~~i~l~~~~--~---~~~~~f~i~~~~~~~l~a~s~~ek~~W~~~i~~  293 (294)
                      ...++.|.+...|.|.+..  +   .-+..|.+.-.+.|.-+|.+..||...+..|.+
T Consensus       158 eN~nGTFsIGKTW~LdELr~Ie~~~~~~~gF~lTl~K~YyW~a~s~kEr~~Fi~sLvK  215 (320)
T 3a58_A          158 ENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLIT  215 (320)
T ss_dssp             ECGGGCEEEEEEEEGGGCCEEEECSSCTTEEEEESSSEEEEEESSHHHHHHHHHHHHH
T ss_pred             ECCCCCEECCCEEEHHHHHHHHCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHH
T ss_conf             0588876415551089988664335889866999488658846976898999999999


Done!