Query T0536 sensory box sensor histidine kinase, Vibrio cholerae, 152 residues
Match_columns 152
No_of_seqs 135 out of 6694
Neff 9.8
Searched_HMMs 22458
Date Fri May 21 18:04:43 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0536.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0536.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wkq_A NPH1-1, RAS-related C3 99.8 3.3E-19 1.5E-23 133.7 6.9 120 20-151 9-132 (332)
2 3lyx_A Sensory BOX/ggdef domai 99.8 3.8E-18 1.7E-22 127.4 10.6 114 24-149 9-123 (124)
3 2z6d_A Phototropin-2; PAS-fold 99.8 2.9E-18 1.3E-22 128.1 10.0 122 19-152 3-128 (130)
4 2gj3_A Nitrogen fixation regul 99.8 1.1E-17 4.9E-22 124.6 12.3 115 21-147 4-119 (120)
5 1v9y_A Heme PAS sensor protein 99.7 3.8E-18 1.7E-22 127.4 9.4 136 7-152 25-161 (167)
6 3luq_A Sensor protein; PAS, hi 99.7 8.9E-18 4E-22 125.1 10.6 114 20-145 1-114 (114)
7 2v0u_A NPH1-1, LOV2; kinase, t 99.7 1E-18 4.7E-23 130.7 5.2 117 23-151 3-123 (146)
8 2qkp_A Uncharacterized protein 99.7 1.4E-17 6.3E-22 123.9 10.3 119 20-152 17-138 (151)
9 3cax_A Uncharacterized protein 99.7 8.4E-17 3.7E-21 119.3 11.1 115 20-152 237-352 (369)
10 1d06_A Nitrogen fixation regul 99.7 9.9E-17 4.4E-21 118.8 10.9 127 9-145 3-130 (130)
11 3mjq_A Uncharacterized protein 99.7 6.1E-17 2.7E-21 120.1 9.8 114 24-152 1-115 (126)
12 3bwl_A Sensor protein; structu 99.7 5.9E-16 2.6E-20 114.2 12.4 123 8-145 3-126 (126)
13 2pr5_A Blue-light photorecepto 99.7 2.4E-16 1.1E-20 116.6 9.9 114 25-152 2-119 (132)
14 3fc7_A HTR-like protein, senso 99.7 1.6E-16 6.9E-21 117.7 7.1 116 12-145 9-125 (125)
15 3ewk_A Sensor protein; PAS dom 99.6 7E-15 3.1E-19 107.7 13.3 123 15-143 104-227 (227)
16 3f1p_B ARYL hydrocarbon recept 99.6 1.1E-15 4.9E-20 112.6 8.8 117 23-150 2-121 (121)
17 2vv6_A FIXL, sensor protein FI 99.6 2.7E-15 1.2E-19 110.2 9.6 113 30-152 1-114 (119)
18 3eeh_A Putative light and redo 99.6 3.4E-15 1.5E-19 109.6 10.1 120 13-145 2-125 (125)
19 2r78_A Sensor protein; sensory 99.6 1.9E-15 8.6E-20 111.1 8.1 115 13-145 2-117 (117)
20 1n9l_A PHOT-LOV1, putative blu 99.6 1.2E-14 5.4E-19 106.3 10.5 104 31-146 2-109 (109)
21 3mfx_A Sensory BOX/ggdef famil 99.6 1.1E-14 4.7E-19 106.6 8.8 120 19-146 4-124 (129)
22 3fg8_A Uncharacterized protein 99.6 1.8E-15 7.8E-20 111.3 4.5 104 24-147 14-118 (118)
23 1byw_A Protein (human ERG pota 99.5 4.7E-14 2.1E-18 102.7 8.9 103 33-147 2-110 (110)
24 3icy_A Sensor protein; sensory 99.5 1.3E-13 5.8E-18 100.1 11.0 114 20-145 2-118 (118)
25 3a0r_A Sensor protein; four he 99.5 1.7E-15 7.6E-20 111.4 1.3 117 18-152 4-121 (349)
26 2vlg_A Sporulation kinase A; h 99.5 3.3E-14 1.5E-18 103.7 6.1 108 26-148 3-111 (111)
27 3f1p_A Endothelial PAS domain- 99.5 1.5E-13 6.7E-18 99.7 8.5 107 32-150 9-117 (117)
28 3b33_A Sensor protein; structu 99.5 1.5E-13 6.6E-18 99.8 8.2 110 20-144 5-114 (115)
29 3a0s_A Sensor protein; PAS-fol 99.4 9.4E-13 4.2E-17 94.9 9.4 95 31-143 1-96 (96)
30 3h9w_A Diguanylate cyclase wit 99.4 3.9E-12 1.7E-16 91.3 10.5 107 31-149 2-111 (115)
31 2jhe_A Transcription regulator 99.3 1.3E-13 5.7E-18 100.2 1.7 109 17-146 75-187 (190)
32 3ewk_A Sensor protein; PAS dom 99.3 4.3E-12 1.9E-16 91.0 8.8 105 35-151 2-107 (227)
33 3d72_A Vivid PAS protein VVD; 99.3 1.7E-11 7.4E-16 87.5 10.5 100 28-140 32-146 (149)
34 1wa9_A Period circadian protei 99.3 5.5E-13 2.4E-17 96.3 2.7 131 15-152 141-272 (368)
35 3gdi_A Period circadian protei 99.3 1.4E-11 6.3E-16 87.9 9.5 122 20-151 153-275 (309)
36 2w0n_A Sensor protein DCUS; si 99.3 4.9E-13 2.2E-17 96.7 0.5 112 14-145 7-118 (118)
37 1nwz_A PYP, photoactive yellow 99.2 1.1E-11 5.1E-16 88.4 7.1 107 22-144 17-125 (125)
38 1wa9_A Period circadian protei 99.1 2.4E-12 1.1E-16 92.5 -1.1 120 33-152 7-141 (368)
39 1mzu_A PPR; photoactive yellow 99.1 3E-11 1.4E-15 85.9 3.9 116 8-137 7-125 (129)
40 1ll8_A PAS kinase; PAS domain, 99.1 4.2E-11 1.9E-15 85.1 3.6 109 27-145 3-113 (114)
41 3gdi_A Period circadian protei 98.9 2.6E-10 1.2E-14 80.3 2.6 117 25-152 18-140 (309)
42 1oj5_A Steroid receptor coacti 98.5 4.4E-07 2E-11 60.9 7.5 106 30-147 5-115 (132)
43 3clo_A Transcriptional regulat 98.1 4.4E-05 1.9E-09 48.9 11.1 131 14-147 25-166 (258)
44 2ool_A Sensor protein; bacteri 96.9 0.00081 3.6E-08 41.3 4.7 38 36-73 46-84 (337)
45 2vea_A Phytochrome-like protei 96.8 0.00044 2E-08 42.9 2.6 43 32-74 28-72 (520)
46 2o9c_A Bacteriophytochrome; ph 96.7 0.0016 7E-08 39.6 4.9 43 35-77 56-99 (342)
47 3e4o_A C4-dicarboxylate transp 95.3 0.13 5.6E-06 28.1 11.2 100 17-148 97-197 (305)
48 1p0z_A Sensor kinase CITA; tra 92.9 0.42 1.9E-05 25.0 8.6 92 19-147 36-128 (131)
49 3fos_A Sensor protein; sensor 91.7 0.59 2.6E-05 24.1 10.6 95 20-147 53-149 (214)
50 2w1r_A Spovt, stage V sporulat 90.8 0.72 3.2E-05 23.6 9.6 94 20-142 4-97 (123)
51 2w1t_A Spovt, stage V sporulat 85.5 1.6 7.2E-05 21.5 9.8 96 18-142 57-152 (178)
52 3g6o_A Bacteriophytochrome; al 79.0 2.2 9.9E-05 20.6 4.4 44 32-75 25-69 (505)
53 3by8_A Sensor protein DCUS; hi 64.3 6.4 0.00028 17.9 5.4 27 123-149 109-135 (142)
54 3lif_A Putative diguanylate cy 61.1 7.3 0.00032 17.5 11.2 98 20-148 56-155 (254)
55 2p08_A Signal transduction his 51.0 6.5 0.00029 17.8 2.2 59 27-89 7-65 (115)
56 3c38_A Autoinducer 2 sensor ki 35.0 19 0.00085 15.0 6.7 81 30-143 79-160 (270)
57 3ddj_A CBS domain-containing p 29.4 24 0.0011 14.5 6.0 24 123-147 259-282 (296)
58 3keb_A Probable thiol peroxida 24.8 29 0.0013 14.0 2.6 13 35-47 140-152 (224)
No 1
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=3.3e-19 Score=133.70 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEE
Q ss_conf 99999999861594289997---89868976031466665531110134278874-241789888899998604301000
Q T0536 20 SRLLLSELLDQLSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSS 95 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~ 95 (152)
-.-.|.+++|+++.|+++.| +||+|++||++|++++||++++++|+++..++ |+..+.....+...+..+..
T Consensus 9 ~~~~l~~~~e~~~~~~vi~D~~~~dg~Ii~vN~a~~~l~Gy~~~EliG~~~~~l~~~~~~~~~~~~i~~~l~~~~~---- 84 (332)
T 2wkq_A 9 HHGSLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTE---- 84 (332)
T ss_dssp -----CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCE----
T ss_conf 2439999997089759998489998949988389999888399998599877717988899999999999984983----
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHC
Q ss_conf 10000123101223212565268888899787879997899988998147998635
Q T0536 96 WEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~e 151 (152)
+...+.. .+.+|..+|..+++.|++|++|++.|++++++||||+|++|
T Consensus 85 -----~~~e~~~---~~kdG~~~~v~~~~~pi~d~~G~i~~~v~~~~DITe~k~~e 132 (332)
T 2wkq_A 85 -----VTVQLIN---YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 132 (332)
T ss_dssp -----EEEEEEE---ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred -----EEEEEEE---ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHH
T ss_conf -----9999999---97899999999999961889999999999999571478988
No 2
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.76 E-value=3.8e-18 Score=127.35 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=88.5
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHHHCCCHHEEECCCCEEE
Q ss_conf 99998615942899978986897603146666553111013427887424-17898888999986043010001000012
Q T0536 24 LSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHL 102 (152)
Q Consensus 24 l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (152)
+..+||++|++|+++|.+|+|++||++|++++|+++++++|+++.++++. ........+......+.. +.
T Consensus 9 ~~~~fd~~~d~i~~~d~~g~i~~~N~~~~~~~g~~~~e~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 79 (124)
T 3lyx_A 9 RAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGK---------WT 79 (124)
T ss_dssp HHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSC---------EE
T ss_pred HHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHEEECHHHHHHHHHHHHHHHHCCCC---------CE
T ss_conf 999996471150899799979989199999988299999299742255614545677888988750685---------20
Q ss_pred EEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 31012232125652688888997878799978999889981479986
Q T0536 103 LPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
..+ ...+.+|...|+.++++|++|++|++.|++++++||||+|+
T Consensus 80 ~e~---~~~~~~g~~~~~~~~~~pi~d~~g~~~~~i~i~~DITerK~ 123 (124)
T 3lyx_A 80 GEI---RMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEE---EEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred EEE---EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 266---55236996889999987899899999999999999937735
No 3
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.76 E-value=2.9e-18 Score=128.06 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEE
Q ss_conf 999999999861594289997---89868976031466665531110134278874-24178988889999860430100
Q T0536 19 KSRLLLSELLDQLSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFS 94 (152)
Q Consensus 19 ~s~~~l~~i~~~~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 94 (152)
++.+.|++++++++.++++.| +||+|+++|++|++++|+++++++|+++..++ |+........+...+..+..
T Consensus 3 r~~~~l~~~~~~~~~~~~i~D~~~~d~~I~~vN~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~l~~~~~--- 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS--- 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC---
T ss_conf 56899999998389969999898997989999879999889298997598667653877888999999999863045---
Q ss_pred ECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 0100001231012232125652688888997878799978999889981479986359
Q T0536 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
+...+. ..+.+|..+|+.+++.|++|++|++.+++++++|||++|++++
T Consensus 80 ------~~~e~~---~~~~dG~~~w~~~~~~pi~d~~g~~~~~i~~~~DITe~ke~~~ 128 (130)
T 2z6d_A 80 ------YCGRLL---NYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp ------EEEEEE---EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred ------CEEEEE---EEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHH
T ss_conf ------206999---9962886699999999999999999999999998838889985
No 4
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.75 E-value=1.1e-17 Score=124.58 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=89.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 999999986159428999789868976031466665531110134278874-2417898888999986043010001000
Q T0536 21 RLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 21 ~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
.++|++++|++|++|+++|.+|+|+++|++|++++|+++++++|+++.+++ |+........+...+..+..
T Consensus 4 ~~~~~~~~e~s~~~i~i~d~~g~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~-------- 75 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKP-------- 75 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHCCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCEECCCCHHHHHHHHHHHCCCCC--------
T ss_conf 999999997124152999699999999689999879695661675400011013536789998763306973--------
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 012310122321256526888889978787999789998899814799
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
+...+.. .+.+|+.+|..+++.|++|++|++.+++++++||||.
T Consensus 76 -~~~e~~~---~~kdG~~~~~~~~~~~i~d~~g~~~~~i~~~~DITel 119 (120)
T 2gj3_A 76 -WSGVLVN---RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp -EEEEEEE---ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred -CEEEEEE---ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf -0612555---8699989999999999999998999999999956677
No 5
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.75 E-value=3.8e-18 Score=127.35 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHH
Q ss_conf 89999999999999999999986159428999789868976031466665531110134278874241-78988889999
Q T0536 7 HENLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTA 85 (152)
Q Consensus 7 ~e~l~~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~ 85 (152)
.+.+...++++.+++..|.++++++++||+++|.+|+|++||+++++++|+++++++|+++.+++|+. .......+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~le~s~dgi~i~d~~g~Ii~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~ 104 (167)
T 1v9y_A 25 AEVIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHN 104 (167)
T ss_dssp ---------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999888999999997387629999598989999779999865788882467743332222332001246777
Q ss_pred HHCCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 8604301000100001231012232125652688888997878799978999889981479986359
Q T0536 86 LVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
...+........ ... .....+|..+|+.+++.|+.+.++ .+++++++|||+++++|+
T Consensus 105 ~~~~~~~~~~~~---~e~-----~~~~kdG~~~~v~isi~~i~~~~~--~~~v~i~~DITe~k~~ee 161 (167)
T 1v9y_A 105 REGGKARVEGMS---REL-----QLEKKDGSKIWTRFALSKVSAEGK--VYYLALVRDASVEMAQKE 161 (167)
T ss_dssp HC-------------CEE-----EEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEC---------
T ss_pred HHHHCCCCCCCC---EEE-----EEEEEECCCCCEEEEEEEEEECCE--EEEEEEEEECHHHHHHHH
T ss_conf 664113345431---699-----999840235320799999996998--999999999879999999
No 6
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.74 E-value=8.9e-18 Score=125.12 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 99999999861594289997898689760314666655311101342788742417898888999986043010001000
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
|+++|+++++++|+||+++|.+|+++++|+++++++|++++++.|+++..+++............+...+....
T Consensus 1 Se~~lr~i~~~~p~~i~~~D~~g~~~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (114)
T 3luq_A 1 SDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRV------ 74 (114)
T ss_dssp CCHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHCTTCCHHHHHHHHHHHTTCCEEE------
T ss_pred CHHHHHHHHHHHCHHHEEECCCCCEEEECHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE------
T ss_conf 97999999971046729997999699994998987245700026876200123310233358999980898400------
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0123101223212565268888899787879997899988998147
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
...+....++..+|+.+++.|++|.+|++.|++++++|||
T Consensus 75 ------~~~~~~~~~g~~~~~~~~~~pi~d~~G~v~g~~~~~~DIT 114 (114)
T 3luq_A 75 ------EEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ------EEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ------EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf ------3422101378329999999999999999999999999859
No 7
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.74 E-value=1e-18 Score=130.70 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=90.2
Q ss_pred HHHHHHHHCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 99999861594289997---89868976031466665531110134278874-241789888899998604301000100
Q T0536 23 LLSELLDQLSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQ 98 (152)
Q Consensus 23 ~l~~i~~~~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (152)
+|.+++|++++|++++| +||+|+++|++|++++||++++++|+++..++ |+........+...+..+.+.
T Consensus 3 ~l~~~~e~~~~~~vi~d~~~~dg~I~~vN~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~l~~~l~~~~~~------ 76 (146)
T 2v0u_A 3 FLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEV------ 76 (146)
T ss_dssp SCCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE------
T ss_pred HHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCC------
T ss_conf 89999981898099995889989799996799998896999981774220203345499999999999819975------
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHC
Q ss_conf 00123101223212565268888899787879997899988998147998635
Q T0536 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~e 151 (152)
...+.. .+.+|..+|+.+++.|++|++|++.+++++++|||++++.+
T Consensus 77 ---~~e~~~---~~kdG~~~~v~~~~~p~~d~~g~~~~~v~v~~DITe~k~~~ 123 (146)
T 2v0u_A 77 ---TVQLIN---YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 123 (146)
T ss_dssp ---EEEEEE---ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred ---EEEEEE---EECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHH
T ss_conf ---279987---84388469999999999979989999999999888999999
No 8
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159}
Probab=99.73 E-value=1.4e-17 Score=123.89 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHH--HHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEEC
Q ss_conf 99999999861594289997898689760314666--655311101342788742417-898888999986043010001
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESR--VIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSW 96 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~--~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (152)
+..+|++|++++|++|+++|.+|+|+++|++++.+ +|....+++|+++.+++|... +.+...++.+.... ....
T Consensus 17 s~e~l~~il~~~P~~i~~~D~~~~i~~~N~~~~~~~~~~~~~~~~iG~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~-- 93 (151)
T 2qkp_A 17 SVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQ-RDKV-- 93 (151)
T ss_dssp CHHHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSSCHHHHHHHHHHHHHHHTTS-BSEE--
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHHHCEECCCHHHHHCCCEEEECCCCCCCCCHHEEECCCCCC-CCEE--
T ss_conf 6999999996398309999699979998323131220247807860751148815533442011021012465-1100--
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 00001231012232125652688888997878799978999889981479986359
Q T0536 97 EQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
.. ....++.+ .|+.+++.|++|.+|++.|++++++|||++|+.|+
T Consensus 94 ---~~------~~~~~~~g--r~i~~~~~pv~d~~G~~~g~i~~~~DITe~k~~e~ 138 (151)
T 2qkp_A 94 ---NM------WFQSERLG--KFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp ---EE------EEEETTTT--EEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGG
T ss_pred ---CC------CCCCCCCC--CEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHH
T ss_conf ---00------00012577--15888633468799989999999998979999999
No 9
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.71 E-value=8.4e-17 Score=119.26 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 99999999861594289997898689760314666655311101342788742417-89888899998604301000100
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWEQ 98 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (152)
+...|++|++++|++|+++|.+|+|+++|++ ..+++. +.+++|+++.+++|... +.+...++.+.. |.....
T Consensus 237 s~~~l~~il~~~p~~i~~vD~~~~i~~~N~a-~~~~~~-~~~~iG~~~~~~~p~~~~~~~~~~~~~~~~-g~~~~~---- 309 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIFTR-TPSVLGRPVQLCHPPKSVYVVNKILKAFKE-GRKKEA---- 309 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSSCC-CGGGTTCBTTTSSCGGGHHHHHHHHHHHHH-TSCSCE----
T ss_pred CHHHHHHHHHCCCCCEEEECCCCEEEEECHH-HHHHCC-CHHHHCCCHHHHCCHHHHHHHHHHHHHHHC-CCCEEE----
T ss_conf 5999999997297878999289939998677-787498-889829842672897679999999999977-995389----
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 001231012232125652688888997878799978999889981479986359
Q T0536 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
.+ ....++. |+.+++.|++|.+|++.|++++++||||+|++|+
T Consensus 310 ---e~------~~~~~g~--~~~~~~~Pv~d~~G~~~G~v~~~~DITe~k~~E~ 352 (369)
T 3cax_A 310 ---TF------WLRLREK--YVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp ---EE------EEEETTE--EEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred ---EE------EEEECCE--EEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHH
T ss_conf ---99------9931998--9999999899989899999999999869999999
No 10
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two- component system; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.70 E-value=9.9e-17 Score=118.84 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHH
Q ss_conf 999999999999999999986159428999789868976031466665531110134278874241-7898888999986
Q T0536 9 NLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALV 87 (152)
Q Consensus 9 ~l~~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~ 87 (152)
+|.+.+++|++++.+|+++++++|+||+++|.+|+|++||+++++++|+++++++|+++.+++|+. .......+...+.
T Consensus 3 ~~~~~~~~l~~~e~~l~~i~~~~~~~ii~~D~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 1d06_A 3 HMLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999707621699989996998879999887969799749975433681217999999999997
Q ss_pred CCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0430100010000123101223212565268888899787879997899988998147
Q T0536 88 IESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
.+........ .... ..+.+|..++..+++.|+.+.++ .+++++++|||
T Consensus 83 ~~~~~~~~~~---~e~~-----~~~~~G~~~~v~~~~s~~~~~~~--~~~~~i~~DIT 130 (130)
T 1d06_A 83 TGEKRIIGID---RVVS-----GQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSC---EEEE-----EECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred CCCCCCCCEE---EEEE-----EECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECC
T ss_conf 1987556516---8999-----99489999999999999998994--89999999787
No 11
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.70 E-value=6.1e-17 Score=120.12 Aligned_cols=114 Identities=10% Similarity=0.124 Sum_probs=89.4
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHHHCCCHHEEECCCCEEE
Q ss_conf 99998615942899978986897603146666553111013427887424-17898888999986043010001000012
Q T0536 24 LSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHL 102 (152)
Q Consensus 24 l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (152)
|++++|++|++|+++|.+|+|+++|+++++++|+++++++|+++.++++. ....+...+..+.......
T Consensus 1 l~~ile~~~d~i~i~d~~g~i~~~N~a~~~~~g~~~~e~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 70 (126)
T 3mjq_A 1 MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKES---------- 70 (126)
T ss_dssp -CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCSE----------
T ss_pred CHHHHHCCCCCEEEECCCCCEEEEEHHHHHCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCE----------
T ss_conf 9689850922459992999599990253302799868801310235402433322013455542257614----------
Q ss_pred EEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 31012232125652688888997878799978999889981479986359
Q T0536 103 LPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
.. ....+.+|..+|+.+++.|+.+.++ .+++++++||||+|++|.
T Consensus 71 ~e---~~~~~~~G~~~~v~~~~~~i~~~~~--~~~~~i~~DITerK~Ae~ 115 (126)
T 3mjq_A 71 LP---LSLEKKEGTSIPAKARIWQGKWHNE--PCLFAIIKDLSKEERASS 115 (126)
T ss_dssp EE---EEEECTTSCEEEEEEEEEEEESSSS--EEEEEEEEECC-------
T ss_pred EE---EEEECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECCHHHHHHH
T ss_conf 89---9999579989999999999998996--699999998889999866
No 12
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protein, PSI-2, protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.68 E-value=5.9e-16 Score=114.17 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHH
Q ss_conf 999999999999999999998615942899978986897603146666553111013427887424-1789888899998
Q T0536 8 ENLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTAL 86 (152)
Q Consensus 8 e~l~~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~ 86 (152)
.++...+++|++++.+|+++++++|+||+++|.+|+|+++|+++++++|+++++++|+++.++++. ....+...+....
T Consensus 3 serk~~e~~L~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~~~g~~~eel~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (126)
T 3bwl_A 3 AERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQLSGFS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89999999999999999999971973299990999899984576888698899983598989168348999999999998
Q ss_pred HCCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 60430100010000123101223212565268888899787879997899988998147
Q T0536 87 VIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
.. ....+...+ .+.+|..+|+.+++.|+.. +|+ ..++++++|||
T Consensus 83 ~~--------~~~~~e~~~-----~~kdG~~~~~~~~~~~~~~-~~~-~~~~~v~~DIT 126 (126)
T 3bwl_A 83 VD--------ERRKFEGLY-----ERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp TT--------CEEEEEEEE-----ECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred HC--------CCEEEEEEE-----EECCCCEEEEEEEEEEEEE-CCE-EEEEEEEEECC
T ss_conf 19--------966999999-----9659959999999999985-992-99999999879
No 13
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, signaling protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.67 E-value=2.4e-16 Score=116.56 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=85.2
Q ss_pred HHHHHHCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHHHCCCHHEEECCCCE
Q ss_conf 999861594289997---8986897603146666553111013427887424-178988889999860430100010000
Q T0536 25 SELLDQLSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
Q Consensus 25 ~~i~~~~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (152)
.+++|++|.||+++| .||+|+++|++|++++|+++++++|+++..+++. ........+...+..+..
T Consensus 2 ~~l~d~~~~~i~v~d~~~~dg~I~~~N~a~~~~~G~s~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~--------- 72 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEP--------- 72 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC---------
T ss_pred CHHHHCCCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCC---------
T ss_conf 06885788419999898897989999689999989199998054100044410149999999999852884---------
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 1231012232125652688888997878799978999889981479986359
Q T0536 101 HLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
+...+. ....+|..+|+.+++.|+.+.+| .+++++++||||++++|+
T Consensus 73 ~~~e~~---~~~~dG~~~~~~~~~~~i~~~~~--~~~i~~~~DITe~k~~e~ 119 (132)
T 2pr5_A 73 VTVQIQ---NYKKDGTMFWNELNIDPMEIEDK--TYFVGIQNDITKQKEYEK 119 (132)
T ss_dssp EEEEEE---EECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECHHHHHHHH
T ss_pred EEEEEE---EECCCCCEEEEEEEEEEEECCCC--CEEEEEEEECCHHHHHHH
T ss_conf 035655---47479979999988888990991--299889997659999999
No 14
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 43049, structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.65 E-value=1.6e-16 Score=117.65 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHC-CCHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999861594289997898689760314666655311101342788742-417898888999986043
Q T0536 12 FQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFP-ESADYLKRKIDTALVIES 90 (152)
Q Consensus 12 ~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p-~~~~~~~~~~~~~~~~~~ 90 (152)
....++++++++|+++++++|++|+++|++|+|+++|+++++++|+++++++|+++.+++| +....+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (125)
T 3fc7_A 9 ENVVSQERTRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGT 88 (125)
T ss_dssp -----------------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999764112323354306999862000022232222222122222221112456778887653144
Q ss_pred HHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0100010000123101223212565268888899787879997899988998147
Q T0536 91 SSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
+... .. .....|++.++.|+ +.+|++.|++++++|||
T Consensus 89 ~~~~---------~~--------~~~~r~~~~~~~pv-~~~~~~~~~~~v~~DIT 125 (125)
T 3fc7_A 89 ATRS---------ED--------AVGGRHYHNQYIPV-DSHRKSDTFQLVSRDIT 125 (125)
T ss_dssp CEEE---------EE--------EETTEEEEEEEEES-STTTTTTEEEEEEEECC
T ss_pred CCCC---------EE--------EECCCCCCEEEEEE-EECCCEEEEEEEEEECC
T ss_conf 4310---------11--------10011453089999-90898999999999793
No 15
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.63 E-value=7e-15 Score=107.74 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHE
Q ss_conf 999999999999986159428999789868976031466665531110134278874-2417898888999986043010
Q T0536 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSF 93 (152)
Q Consensus 15 ~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~ 93 (152)
.++..+..+++.+++++|.+|+++|++|+|++||+++++++|+++++++|+++.+++ |+........+...+..+...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (227)
T 3ewk_A 104 KEAEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPW- 182 (227)
T ss_dssp THHHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCE-
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE-
T ss_conf 9999998767999986410269984897599998688764499979962146542114542101345667765226746-
Q ss_pred EECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 00100001231012232125652688888997878799978999889981
Q T0536 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~D 143 (152)
..+. ... ........+|..+|+.+++.|++|++|++.|++++++|
T Consensus 183 -~~e~---~~~-~k~~~~~~dG~~~wv~~~~~pi~~~~g~~~~~~~i~~D 227 (227)
T 3ewk_A 183 -SGRL---LNR-RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp -ECCE---EEE-EECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred -EEEE---EEE-EECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf -9999---999-84374567982999999999999899999999999989
No 16
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B
Probab=99.62 E-value=1.1e-15 Score=112.58 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCEEEE-ECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCE
Q ss_conf 999998615942899-9789868976031466665531110134278874-24178988889999860430100010000
Q T0536 23 LLSELLDQLSFALCI-VRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
Q Consensus 23 ~l~~i~~~~~~~i~i-~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (152)
+|+++....|+.+++ .|.||+|+++|+++++++|+++++++|+++++++ |+..+.+...+...+..+.... .
T Consensus 2 ~f~~l~~~~p~~fi~r~d~dG~i~~vn~~~~~i~Gy~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------~ 75 (121)
T 3f1p_B 2 EFKGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVL------S 75 (121)
T ss_dssp ------CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCE------E
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCEE------E
T ss_conf 4311220599509999989999999998999887969999865345664000001022221000101234304------5
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEECC-CCCEEEEEEEEEEHHHHHHH
Q ss_conf 123101223212565268888899787879-99789998899814799863
Q T0536 101 HLLPFKSSRPVSGEEEQMYQNLEVIPIHSE-DGTIEHVCLCVYDVTIQASQ 150 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~-~g~v~gv~~~~~DITe~~~~ 150 (152)
.. .+....+|..+|+.++..|++|+ +|++.+++++.+||||+|++
T Consensus 76 --~e---~~~~~kdG~~~w~~~~~~~i~d~~~g~~~~ii~v~~DIt~rkq~ 121 (121)
T 3f1p_B 76 --VM---FRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE 121 (121)
T ss_dssp --EE---EEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC---
T ss_pred --EE---EEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCC
T ss_conf --89---97476999599999999999938999699999999999530268
No 17
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.61 E-value=2.7e-15 Score=110.25 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=85.6
Q ss_pred HCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCC
Q ss_conf 159428999789868976031466665531110134278874241-7898888999986043010001000012310122
Q T0536 30 QLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSS 108 (152)
Q Consensus 30 ~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (152)
++|+||+++|.+|+|++||+++++++|+++++++|+++.+++|.. .......+......+....... ....
T Consensus 1 t~pd~i~~~d~~g~I~~~N~~~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----- 72 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGI---GRIV----- 72 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTT---CEEE-----
T ss_pred CCCEEEEEECCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---EEEE-----
T ss_conf 97729999989992998719999986578999725664445663103567899999996486643564---0699-----
Q ss_pred CCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 32125652688888997878799978999889981479986359
Q T0536 109 RPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 109 ~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
.....+|..++..+++.|+.+.++ .+++++++||||++++|+
T Consensus 73 ~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~i~DITe~k~~e~ 114 (119)
T 2vv6_A 73 TGKRRDGTTFPMHLSIGEMQSGGE--PYFTGFVRDLTEHQQTQA 114 (119)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC-------
T ss_pred EEEECCCCEEEEEEEECCEECCCC--EEEEEEEEECHHHHHHHH
T ss_conf 986125513223567532033996--499999998189999999
No 18
>3eeh_A Putative light and redox sensing histidine kinase; structural genomics, PSI, MCSG, protein structure initiative; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.61 E-value=3.4e-15 Score=109.60 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCEEEEECCHHHHHHHHHHHHCCCC--HHHHH-CCCHHHHHHHHHHHHHC
Q ss_conf 99999999999999986159428999789-8689760314666655311101342--78874-24178988889999860
Q T0536 13 QSNAMAKSRLLLSELLDQLSFALCIVRND-YVIVKVNEYFESRVIFDGETMQGKN--ILELF-PESADYLKRKIDTALVI 88 (152)
Q Consensus 13 ~~~~l~~s~~~l~~i~~~~~~~i~i~D~d-~~i~~~N~~~~~~~g~~~~~i~G~~--~~~~~-p~~~~~~~~~~~~~~~~ 88 (152)
+.++|++|+++|+++++++|++|+++|.+ ++++++|+++++++|++++++.+.+ +.+.+ |++...+...+..+...
T Consensus 2 ae~~l~~se~r~~~i~e~~~~~i~~~d~~~~~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~ihpdd~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCC
T ss_conf 79999999999999986498449999998995999783886512345321111101442058752032035442220343
Q ss_pred CCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 430100010000123101223212565268888899787879997899988998147
Q T0536 89 ESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
+ ++.+.++. ...+|..+|+.+...|++|++|++.+++++++|||
T Consensus 82 ~----------~~~~e~r~---~~~~G~~~wv~~~~~~i~d~~g~~~~~~g~~~DIT 125 (125)
T 3eeh_A 82 E----------SADVECRV---NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp C----------CEEEEEEE---CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred C----------EEEEEEEE---ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 2----------04677887---86998789999999999999989999999999809
No 19
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.60 E-value=1.9e-15 Score=111.08 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHC-CCHHHHHHHHHHHHHCCCH
Q ss_conf 999999999999999861594289997898689760314666655311101342788742-4178988889999860430
Q T0536 13 QSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFP-ESADYLKRKIDTALVIESS 91 (152)
Q Consensus 13 ~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 91 (152)
++++|..++.+|+++++++|+||+++|.+|+|+++|+++++++|+++++++|+++.++++ +........++.+...+.
T Consensus 2 ~~e~L~~~e~~fr~i~e~~~~~i~i~d~~g~i~~~N~~~~~~~g~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (117)
T 2r78_A 2 GTENLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP- 80 (117)
T ss_dssp CCCSHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-
T ss_conf 6899999999999999816745099969998999939999987959789412673214540013657899999983998-
Q ss_pred HEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 100010000123101223212565268888899787879997899988998147
Q T0536 92 SFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
+...+ +....+|..+|+.++..|+.| |+ ++++++|||
T Consensus 81 ---------~~~e~---~~~~~dG~~~~~~~~~~~i~d--~~---~~~~~~DIT 117 (117)
T 2r78_A 81 ---------LREER---TVWTRNGDQLTVELSAHLLPD--GK---ILGIARDVS 117 (117)
T ss_dssp ---------EEEEE---EEECTTSCEEEEEEEEEECTT--SC---EEEEEEC--
T ss_pred ---------CEEEE---EEECCCCCEEEEEEEEEEEEC--CE---EEEEEEECC
T ss_conf ---------37899---999799999999999999889--98---999999794
No 20
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.58 E-value=1.2e-14 Score=106.30 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEEC
Q ss_conf 594289997---89868976031466665531110134278874-24178988889999860430100010000123101
Q T0536 31 LSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFK 106 (152)
Q Consensus 31 ~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (152)
+..++++.| +||+|+++|++|++++|+++++++|+++..++ |+........+...+..+... ...+.
T Consensus 2 ~~~~~vi~Da~~pDg~Ii~vN~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---------~~e~~ 72 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEAC---------SVRLL 72 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCE---------EEEEE
T ss_pred CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCCEE---------EEEEE
T ss_conf 776299994889989699996899998893999980852321246557999999998864059629---------99999
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 2232125652688888997878799978999889981479
Q T0536 107 SSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTI 146 (152)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe 146 (152)
..+.+|+.+|..+++.|++|++|++.+++++++|||.
T Consensus 73 ---~~~kdG~~~w~~~~~~pi~d~~G~~~~~v~~~~DITa 109 (109)
T 1n9l_A 73 ---NYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp ---EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred ---EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf ---9917998999999986899999999999999997699
No 21
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.56 E-value=1.1e-14 Score=106.63 Aligned_cols=120 Identities=9% Similarity=0.111 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECC
Q ss_conf 999999999861594289997898689760314666655311101342788742417-8988889999860430100010
Q T0536 19 KSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 19 ~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
.+.++|+.+++++++||+++|.+|+|++||+++++++|+++++++|+++.+++|+.. ......+......+........
T Consensus 4 ~s~~~~~~il~~~~d~i~~~D~~G~I~~~N~aa~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 4 SSLETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999997235215999599989999979995655997998599099980716577789999999985032203546
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 0001231012232125652688888997878799978999889981479
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTI 146 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe 146 (152)
..+. .....+.+|..++++++++|+.+.++ .++++++||-.
T Consensus 84 ~~~~-----Ev~~~~~dG~~~~velsis~~~~~~~---~~v~v~rDI~~ 124 (129)
T 3mfx_A 84 HPAQ-----ETTLICASGKAKDVELSISYIPGHEP---MFVMVMHDLEH 124 (129)
T ss_dssp EEEE-----EEEEECTTSCEEEEEEEEEEECSSSC---EEEEEEEEC--
T ss_pred CCEE-----EEEEECCCCCEEEEEEEEEEEECCCC---EEEEEEEECCC
T ss_conf 6504-----79999789979999999999989996---99999998975
No 22
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.55 E-value=1.8e-15 Score=111.33 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=80.8
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHHCCCHHEEECCCCEEE
Q ss_conf 999986159428999789868976031466665531110134278874241-7898888999986043010001000012
Q T0536 24 LSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALVIESSSFSSWEQKPHL 102 (152)
Q Consensus 24 l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (152)
++++++++++|++++|.+|+|+++|+++++++|+++++++|++++++||+. ...+...+..++..+.+...
T Consensus 14 ~e~~~~~~~~Gi~~vD~dgri~~~N~a~~~llG~~~eeliGk~~~e~~p~~~~~~~~~~~~~~~~~g~~~~~-------- 85 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQT-------- 85 (118)
T ss_dssp CCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEE--------
T ss_pred HHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHCCCCHHHHCCHHHCCCHHHHHHHHHHCCCEEEE--------
T ss_conf 999997089899999799829989899898857899998599699948453311056789999853984999--------
Q ss_pred EEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 310122321256526888889978787999789998899814799
Q T0536 103 LPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
.+.. ..+.+ .|+.+++.|..+ |++++++|||+|
T Consensus 86 -e~~~---~~~~~--~w~~v~~~p~~d------Gi~v~~rDIT~q 118 (118)
T 3fg8_A 86 -RVDS---LYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp -EEEC---SSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred -EEEE---ECCCC--EEEEEEEEECCC------EEEEEEEECCCC
T ss_conf -9999---88899--899999998799------999999982799
No 23
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.51 E-value=4.7e-14 Score=102.75 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=75.9
Q ss_pred CEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-C--CCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEEC
Q ss_conf 4289997---89868976031466665531110134278874-2--4178988889999860430100010000123101
Q T0536 33 FALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-P--ESADYLKRKIDTALVIESSSFSSWEQKPHLLPFK 106 (152)
Q Consensus 33 ~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (152)
..+++.| +|+.|+++|++|++++|+++++++|+++...+ + +........+...+..+.+. ...+.
T Consensus 2 ~~~~i~~a~~~d~~I~~vN~a~~~~~G~~~~ei~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~e~~ 72 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEER---------KVEIA 72 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCE---------EEEEE
T ss_pred CEEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCC---------EEEEE
T ss_conf 609997588998949999889999889697896699804521001023167788888877523642---------02689
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 22321256526888889978787999789998899814799
Q T0536 107 SSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
..+.+|+.+|+.+++.|++|++|++.+++++++||||+
T Consensus 73 ---~~~kdg~~~w~~~~~~pv~d~~G~i~~~i~~~~DITeR 110 (110)
T 1byw_A 73 ---FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp ---EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred ---EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf ---99579969999999999999998999999999976899
No 24
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.51 E-value=1.3e-13 Score=100.12 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEE--EECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 999999998615942899978986897--6031466665531110134278874-2417898888999986043010001
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVK--VNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSW 96 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~--~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 96 (152)
++++|++++|++|++|+.+|.+|.+++ +|.++..++|++..+..++++.+++ |+..+.+...+..+...+.+..
T Consensus 2 ~~e~~r~l~d~~p~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~--- 78 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT--- 78 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE---
T ss_pred CHHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHCCCCCCHHHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCC---
T ss_conf 88999999854940189998889889996576874632849588658988995698899898852002332234431---
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0000123101223212565268888899787879997899988998147
Q T0536 97 EQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
..+ +..+.++..+|+.++..|++|++|++.|+++++.|||
T Consensus 79 ----~e~-----~~~~~~g~~~wv~~~~~~~~d~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 ----LVY-----RIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp ----EEE-----EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ----CCE-----EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf ----201-----5782599799999999999999979999999999779
No 25
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.51 E-value=1.7e-15 Score=111.40 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 99999999998615942899978986897603146666553111013427887424178988889999860430100010
Q T0536 18 AKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 18 ~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
++.|.+++++++++|+||+++|.+|+|++||+++++++|+++++++|+++.++++... +....+.++..+....
T Consensus 4 e~~R~~~e~il~~~~~gi~v~d~~g~i~~~N~aa~~llg~~~~e~~g~~~~~l~~~~~--~~~~~~~~~~~~~~~~---- 77 (349)
T 3a0r_A 4 EHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE--IGSVAESVFENKEPVF---- 77 (349)
T ss_dssp -----CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTH--HHHHHHHHHHHCCCCE----
T ss_pred HHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHCCCHHH--HHHHHHHHHHCCCEEE----
T ss_conf 9998899999986426748998959002706999999782989985998789489788--9999999982598399----
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCC-EEEEEEEEEEHHHHHHHCC
Q ss_conf 000123101223212565268888899787879997-8999889981479986359
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGT-IEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~-v~gv~~~~~DITe~~~~eq 152 (152)
..+. ..++ .++.+++.|+.+.+|. +.|++++++|||+++++|+
T Consensus 78 -----~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~g~v~~~~DIT~~~~~e~ 121 (349)
T 3a0r_A 78 -----LNFY-----KFGE--RYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEE 121 (349)
T ss_dssp -----EECC-----CBTT--BCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTT
T ss_pred -----EEEE-----CCCC--EEEEEEEEEEECCCCCEEEEEEEEEEEHHHHHHHHH
T ss_conf -----9997-----0881--899999999982898778899999984559999999
No 26
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.48 E-value=3.3e-14 Score=103.68 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=87.0
Q ss_pred HHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEE
Q ss_conf 9986159428999789868976031466665531110134278874-241789888899998604301000100001231
Q T0536 26 ELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLP 104 (152)
Q Consensus 26 ~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (152)
-++++++++++++|.+|+|+++|+++++++||++++++|+++.+++ |++..... ..+...... .+..+
T Consensus 3 ~~l~~~~D~i~~~d~~G~i~~vN~~~~~i~Gy~~~el~g~~~~~~~hped~~~~~----~~~~~~~~~------~~~~~- 71 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVE----SYFYNEHHL------MPCTF- 71 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHH----HHHHCSCCS------SCEEE-
T ss_pred EEEEECCCEEEEECCCCEEEEECHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH----HHHHHHCCC------EEEEE-
T ss_conf 7668367379999899849999989999878998896554431159888999999----999850486------06445-
Q ss_pred ECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 01223212565268888899787879997899988998147998
Q T0536 105 FKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQA 148 (152)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~ 148 (152)
+..+.+|..+|+.+++.|+.+..|.....+++..||||+|
T Consensus 72 ----r~~~kdG~~~Wve~~~~~i~~~~g~~~r~i~~~~di~e~k 111 (111)
T 2vlg_A 72 ----RFIKKDHTIVWVEAAVEIVTTRAERTEREIILKMKVLEEE 111 (111)
T ss_dssp ----EEECTTSCEEEEEEEEEEC-------CCCEEEEEEEC---
T ss_pred ----EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf ----6895899999999999999879979407999998803279
No 27
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Probab=99.47 E-value=1.5e-13 Score=99.72 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=81.6
Q ss_pred CCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCC
Q ss_conf 9428999789868976031466665531110134278874-241789888899998604301000100001231012232
Q T0536 32 SFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRP 110 (152)
Q Consensus 32 ~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (152)
+..+...+.||+++++|+++++++|+++++++|+++++++ |+....+...+..+...+... ... .+.
T Consensus 9 ~~fi~~~~~dg~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~e---~~~ 76 (117)
T 3f1p_A 9 KTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVV---------SGQ---YRM 76 (117)
T ss_dssp GEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEE---------CCC---EEE
T ss_pred CCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCEEEEECHHHCCHHHHHHHHCCCCCCCE---------ECC---EEE
T ss_conf 82899999999899999899998596967911630016727135111233332111112210---------011---001
Q ss_pred CCCCCEEEEEEEEEEEEECCC-CCEEEEEEEEEEHHHHHHH
Q ss_conf 125652688888997878799-9789998899814799863
Q T0536 111 VSGEEEQMYQNLEVIPIHSED-GTIEHVCLCVYDVTIQASQ 150 (152)
Q Consensus 111 ~~~~~~~~~~~~~~~Pi~d~~-g~v~gv~~~~~DITe~~~~ 150 (152)
...+|..+|+.++..|++|++ |++.+++++.+||||+++.
T Consensus 77 ~~~dG~~iwv~~~~~~i~d~~~~~~~~iv~~~~dITe~k~~ 117 (117)
T 3f1p_A 77 LAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp ECTTSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred ECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHCC
T ss_conf 87999799999999999978999399999999999523049
No 28
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.46 E-value=1.5e-13 Score=99.78 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 99999999861594289997898689760314666655311101342788742417898888999986043010001000
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
.+.+++++++++|.||+++|.+|+|+++|+++++++|+++++++|+++.++|++.... ...+..++..+..... +
T Consensus 5 ~~~l~~~il~~~~~~i~~iD~~g~I~~~N~aa~~l~g~s~~el~G~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~----~ 79 (115)
T 3b33_A 5 DTSLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLD-LALLTQPLQSGQSITD----S 79 (115)
T ss_dssp -CCHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEECC-THHHHHHHHHCCCEEE----E
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHCCCCHHH-HHHHHHHHHCCCCEEE----E
T ss_conf 1789999985147659999799999998969997746548877498599985980677-8999999982997178----9
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 012310122321256526888889978787999789998899814
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
. .. ...+|..+++++++.|+.+++|. .+++.++||
T Consensus 80 ~--~~------~~~~G~~~~v~~s~~pi~~~~~~--~ilv~~rdi 114 (115)
T 3b33_A 80 D--VT------FVVDGRPLMLEVTVSPITWQRQL--MLLVEMRKI 114 (115)
T ss_dssp E--EE------EEETTEEEEEEEEEEEEEETTEE--EEEEEEEEC
T ss_pred E--EE------EEECCCEEEEEEEEEEEEECCCE--EEEEEEEEC
T ss_conf 9--99------99799199999999999959977--999999968
No 29
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.41 E-value=9.4e-13 Score=94.94 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCC
Q ss_conf 59428999789868976031466665531110134278874241789888899998604301000100001231012232
Q T0536 31 LSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRP 110 (152)
Q Consensus 31 ~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (152)
++.||+++|.+|+|++||+++++++|+++++++|+++.++++... +...+...+..+.+.. ...
T Consensus 1 m~~gvi~~D~~g~I~~~N~~a~~l~g~~~~e~iG~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~----- 64 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE--IGSVAESVFENKEPVF---------LNF----- 64 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGSTTCHH--HHHHHHHHHHHTCCEE---------EEE-----
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCEEE---------EEE-----
T ss_conf 987999998989899998798987599989976983999501001--3258999984795899---------999-----
Q ss_pred CCCCCEEEEEEEEEEEEECCCCC-EEEEEEEEEE
Q ss_conf 12565268888899787879997-8999889981
Q T0536 111 VSGEEEQMYQNLEVIPIHSEDGT-IEHVCLCVYD 143 (152)
Q Consensus 111 ~~~~~~~~~~~~~~~Pi~d~~g~-v~gv~~~~~D 143 (152)
..+...|+.++++|+++.+|+ +.|++.++.|
T Consensus 65 --~~~~~~~~~v~~~Pi~~~~~~~i~g~v~~~~D 96 (96)
T 3a0s_A 65 --YKFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp --EEETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred --ECCCCEEEEEEEEEEECCCCCEEEEEEEEEEC
T ss_conf --87991999999999891899999999999989
No 30
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.90A {Marinobacter aquaeolei VT8}
Probab=99.37 E-value=3.9e-12 Score=91.25 Aligned_cols=107 Identities=8% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCCEEEEECCC-CCEEEEECCHHHHHHHHHHHHCCCCHH-HHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECC
Q ss_conf 59428999789-868976031466665531110134278-874-241789888899998604301000100001231012
Q T0536 31 LSFALCIVRND-YVIVKVNEYFESRVIFDGETMQGKNIL-ELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKS 107 (152)
Q Consensus 31 ~~~~i~i~D~d-~~i~~~N~~~~~~~g~~~~~i~G~~~~-~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (152)
..++++.+|.+ ++++|+|+++++++|+++++++|.+.+ +++ |+....+...+...+..+.+ +.+.+
T Consensus 2 t~~~~W~~D~~t~~~~yvn~~~~~i~G~~~e~~~~~~~~~~~i~pdd~~~~~~~~~~~~~~~~~---------~~~e~-- 70 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVD---------HEADY-- 70 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCC---------EEEEE--
T ss_pred CCEEEEEEECCCCEEEEECHHHHHHHCCCHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHCCCE---------EEEEE--
T ss_conf 8479999989999899999999998499978828930332012256799999999999855970---------78999--
Q ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 232125652688888997878799978999889981479986
Q T0536 108 SRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
+....+|..+|+.++..|++|++|++.++++++.||||+..
T Consensus 71 -r~~~~dG~~~wv~~~~~~~~d~~g~~~~~~g~~~DITee~~ 111 (115)
T 3h9w_A 71 -RALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHH 111 (115)
T ss_dssp -EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC
T ss_pred -EEEECCCCCHHHEEECEEEECCCCCEEEEEEEEEEECCCCC
T ss_conf -99960565201102010499999899999999998997876
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.30A {Escherichia coli}
Probab=99.35 E-value=1.3e-13 Score=100.16 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 99999999999861594289997898689760314666655311101342788742417898888999986043010001
Q T0536 17 MAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSW 96 (152)
Q Consensus 17 l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 96 (152)
+++++..|+++++++|+||+++|.+|+|++||+++++++|+++++++|+++.+++|+..- . .........
T Consensus 75 ~e~~~~~~~~il~~~~d~i~~~D~~g~i~~~N~aa~~l~g~~~~~~~g~~~~~l~~~~~~--~----~~~~~~~~~---- 144 (190)
T 2jhe_A 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF--L----RWLESEPQD---- 144 (190)
T ss_dssp TTHHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH--H----HHHHTCCCS----
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCHHH--H----HHHHHCCCC----
T ss_conf 799999999999706424399989999999899999987919999963879995896769--9----999707764----
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEEEE----CCCCCEEEEEEEEEEHHH
Q ss_conf 00001231012232125652688888997878----799978999889981479
Q T0536 97 EQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIH----SEDGTIEHVCLCVYDVTI 146 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~----d~~g~v~gv~~~~~DITe 146 (152)
.. ...+..+|..++ +.+.|+. |.+|.+.|++++++|+|.
T Consensus 145 -~~--------~~~v~~~G~~~~--~~~~pi~~~~~~~~~~~~G~Vi~~r~~tr 187 (190)
T 2jhe_A 145 -SH--------NEHVVINGQNFL--MEITPVYLQDENDQHVLTGAVVMLRSTIR 187 (190)
T ss_dssp -CE--------EEEEEETTEEEE--EEEEEETTTTEEEEEEEE-HHHHHHHHTT
T ss_pred -CC--------EEEEEECCEEEE--EEEEEEEEECCCCCCEEEEEEEEEECHHH
T ss_conf -42--------199999997999--99999998646898389999999987888
No 32
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.33 E-value=4.3e-12 Score=90.99 Aligned_cols=105 Identities=11% Similarity=0.102 Sum_probs=77.3
Q ss_pred EEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCCCCC
Q ss_conf 899978986897603146666553111013427887424-1789888899998604301000100001231012232125
Q T0536 35 LCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSG 113 (152)
Q Consensus 35 i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (152)
|++.|.+|+|++||++|++++|+++++++|+++..+++. ....+..........+.... ... .....
T Consensus 2 i~i~D~~G~i~~~N~a~~~~~G~~~eel~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~-----~~~~~ 69 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQ-------GEF-----CNRRK 69 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEE-------EEE-----EEECS
T ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEE-------EEE-----EEEEC
T ss_conf 999959999898338899988929999949988892894134677667777640277245-------899-----99941
Q ss_pred CCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHC
Q ss_conf 65268888899787879997899988998147998635
Q T0536 114 EEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
Q Consensus 114 ~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~e 151 (152)
.+..+++.+++.|+++.+|.+.+++.+..|+|+++..+
T Consensus 70 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~ 107 (227)
T 3ewk_A 70 DGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAE 107 (227)
T ss_dssp SSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHH
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHH
T ss_conf 54348765566556536897633212320236999999
No 33
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=99.30 E-value=1.7e-11 Score=87.47 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-C-----------HHHHHHHHHHHHHCCCHH
Q ss_conf 861594289997---8986897603146666553111013427887424-1-----------789888899998604301
Q T0536 28 LDQLSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-S-----------ADYLKRKIDTALVIESSS 92 (152)
Q Consensus 28 ~~~~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~-----------~~~~~~~~~~~~~~~~~~ 92 (152)
++ .+.+|+++| +|++|++||++|++++||++++++|+++..+++. . .......+...+..+.+
T Consensus 32 ~~-~s~ai~i~D~~~~D~~Ii~vN~af~~~tGys~eEviGr~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~- 109 (149)
T 3d72_A 32 VD-TSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE- 109 (149)
T ss_dssp CC-TTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC-
T ss_pred HH-CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCE-
T ss_conf 20-1531999969999897999868999888929999859862130171021354322222799999999999976985-
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 000100001231012232125652688888997878799978999889
Q T0536 93 FSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLC 140 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~ 140 (152)
+...+ ...+.+|..+|..+++.|++|++|++.+++++
T Consensus 110 --------~~~E~---~~~~kdG~~~wv~~~~~pv~De~G~v~~~vGi 146 (149)
T 3d72_A 110 --------VQVEV---VNFKKNGQRFVNFLTMIPVRDETGEYRYSMGF 146 (149)
T ss_dssp --------EEEEE---EEECTTCCEEEEEEEEEEEECTTSSEEEEEEE
T ss_pred --------EEEEE---EEECCCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf --------99999---87859998999999999999999899999999
No 34
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.30 E-value=5.5e-13 Score=96.35 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHE
Q ss_conf 999999999999986159428999789868976031466665531110134278874-2417898888999986043010
Q T0536 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSF 93 (152)
Q Consensus 15 ~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~ 93 (152)
++|..++..+++++++++++++.+|.++.++++|++++.++|++++++.|..+..++ |++...+..........+....
T Consensus 141 ~~l~~~e~~~r~l~e~~~~~i~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 220 (368)
T 1wa9_A 141 PIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAG 220 (368)
T ss_dssp ECCCSCCSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTSBGGGGBCTTTHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 88775577889998519706999916996885200112113444012022322345542349999999987555313566
Q ss_pred EECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 00100001231012232125652688888997878799978999889981479986359
Q T0536 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
. ..+. ...+....+|.++|+.++..|++|+.|...+++++++|||+++++++
T Consensus 221 ~----~~~~---~e~r~~~k~G~~~wv~~~~~~~~d~~g~~~~~v~~~~dIt~~~~~e~ 272 (368)
T 1wa9_A 221 A----SFCS---KPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCN 272 (368)
T ss_dssp C----CEEC---CCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSC
T ss_pred C----CCCH---HHHEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHH
T ss_conf 6----5421---10100205898899999999999789980789999999141253299
No 35
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.29 E-value=1.4e-11 Score=87.88 Aligned_cols=122 Identities=8% Similarity=-0.020 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 9999999986159428999789868976031466665531110134278874-241789888899998604301000100
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQ 98 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (152)
++..+..+.++.+++++..|.+|.++++|+++++++|++++++.|+++++++ |++...+...+..+...+...+...
T Consensus 153 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~n~~~~~~lG~~~~e~~~~~~~~~~hpeD~~~~~~~~~~~~~~~~~~~~~~-- 230 (309)
T 3gdi_A 153 SGYEAPRIPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYS-- 230 (309)
T ss_dssp CTTSSSCCCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEE--
T ss_pred CHHHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE--
T ss_conf 144544332047623899717851999762774202457532223332345540119999999999987547873123--
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHC
Q ss_conf 00123101223212565268888899787879997899988998147998635
Q T0536 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~e 151 (152)
..+....+|.++|+.....|++|+.|...+.++.++|+|++++++
T Consensus 231 --------e~r~~~~dG~~~wv~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~e 275 (309)
T 3gdi_A 231 --------PIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNE 275 (309)
T ss_dssp --------EEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSS
T ss_pred --------EEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCHHHH
T ss_conf --------556676999199999999999917999568999999988643217
No 36
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.26 E-value=4.9e-13 Score=96.65 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHE
Q ss_conf 99999999999999861594289997898689760314666655311101342788742417898888999986043010
Q T0536 14 SNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSF 93 (152)
Q Consensus 14 ~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (152)
.+++++..+.++++++++++||+++|.+|+|++||+++++++|++.+. +|+++.+++++... ...+..++..+....
T Consensus 7 ~eei~~~~~~~~~il~~i~dgvi~iD~~g~I~~~N~aa~~i~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 83 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQ-DDEKLSTLSHSWSQ--VVDVSEVLRDGTPRR 83 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTT-TTSSCCCTTCCCSC--THHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHH-HCCCHHHHCCCCHH--HCHHHHHHHCCCEEE
T ss_conf 999999999999999714781899989990999998999886689889-67936775478023--253899985598346
Q ss_pred EECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0010000123101223212565268888899787879997899988998147
Q T0536 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
. ... ..++.. +.++..|+.+ +|++.|++++++|||
T Consensus 84 ~------~~~--------~~~~~~--~~v~~~Pi~~-~~~~~G~V~~~~DIT 118 (118)
T 2w0n_A 84 D------EEI--------TIKDRL--LLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp C------CCE--------ESSSCE--ECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred E------EEE--------EECCEE--EEEEEEEEEE-CCEEEEEEEEEEECC
T ss_conf 6------999--------989999--9999999999-998999999999669
No 37
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.25 E-value=1.1e-11 Score=88.44 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=74.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCC-HHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 99999986159428999789868976031466665531110134278874-241-7898888999986043010001000
Q T0536 22 LLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PES-ADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 22 ~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
.+...++|++|+|++++|.+|+|++||+++++++|+++++++|+++++++ |+. .+.+...+......+.... .
T Consensus 17 ~~~~~~ld~~~~Gii~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~----~- 91 (125)
T 1nwz_A 17 KMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNT----M- 91 (125)
T ss_dssp TCCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEE----E-
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCE----E-
T ss_conf 99999985688269999799999768899998858666876797044404870017999999999997499715----8-
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 012310122321256526888889978787999789998899814
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
..+ ....++..++++++.. +..+|. ++..+++||
T Consensus 92 ---~~~----~~~~~g~~~~V~v~~~--~~~~g~--~~~v~V~~i 125 (125)
T 1nwz_A 92 ---FEY----TFDYQMTPTKVKVHMK--KALSGD--SYWVFVKRV 125 (125)
T ss_dssp ---EEE----EECTTSCCEEEEEEEE--ECSSSS--EEEEEEEEC
T ss_pred ---EEE----EECCCCCEEEEEEEEE--EECCCC--EEEEEEEEC
T ss_conf ---999----9714996899999999--913899--699999989
No 38
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.13 E-value=2.4e-12 Score=92.47 Aligned_cols=120 Identities=10% Similarity=0.062 Sum_probs=76.9
Q ss_pred CEEEE--ECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCC----------CHHEEECCCC
Q ss_conf 42899--9789868976031466665531110134278874-241789888899998604----------3010001000
Q T0536 33 FALCI--VRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIE----------SSSFSSWEQK 99 (152)
Q Consensus 33 ~~i~i--~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 99 (152)
+|+++ .+.||+|+++|+++++++||++++++|+++++++ |++.+.+...+....... ...+......
T Consensus 7 ~~f~~vi~~~dG~I~~vN~~~~~ilGys~eEliG~~~~dlihPeD~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (368)
T 1wa9_A 7 DSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRR 86 (368)
T ss_dssp CCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCTTTHHHHHHHTTSCC------------CCCEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEEECC
T ss_conf 85899999999889999879999879399998699799964997899999986236665301024565660799996222
Q ss_pred E-EE-EEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
Q ss_conf 0-12-31012232125652688888997878799978999889981479986359
Q T0536 100 P-HL-LPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 100 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~eq 152 (152)
. +. .........++.+...+...++.|+++.+|...++.++..|||+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~Dit~~k~~e~ 141 (368)
T 1wa9_A 87 YRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATP 141 (368)
T ss_dssp SCCCSSCCSSSCCCCCCEEEEEEECCBCCCCCCCC------CCSCCCEEEEEEEE
T ss_pred CCCEEECCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 0230573346653446448999999998634456773322244423779999888
No 39
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.11 E-value=3e-11 Score=85.88 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHH-HCCC-HHHHHHHHHH
Q ss_conf 9999999999999-99999998615942899978986897603146666553111013427887-4241-7898888999
Q T0536 8 ENLYFQSNAMAKS-RLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILEL-FPES-ADYLKRKIDT 84 (152)
Q Consensus 8 e~l~~~~~~l~~s-~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~-~p~~-~~~~~~~~~~ 84 (152)
++....+++++.. +..+++++|++|.||+++|.+|+|++||+++++++|+++++++|+++++. +|+. ...+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~a~lda~p~GIi~~D~~GrI~~~N~aa~~l~G~~~eeliGr~~~~~~~P~~~~~~~~~~~~~ 86 (129)
T 1mzu_A 7 DDFGPFTEQIRGTIDGMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMD 86 (129)
T ss_dssp -------------CC---CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCCCCCHHHHHHHHH
T ss_conf 45220789999999889999986599059999899959999789998868398997799377807876667899999999
Q ss_pred HHHCCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
Q ss_conf 98604301000100001231012232125652688888997878799978999
Q T0536 85 ALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHV 137 (152)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv 137 (152)
++..+.... . +.+ .....+..+++.++..+. .+|.-..+
T Consensus 87 ~l~~G~~~~------~--~~~----~~~~~g~~~~V~v~l~~~--p~~~~~~v 125 (129)
T 1mzu_A 87 GVTSGTLDA------R--FDF----VFDFQMAPVRVQIRMQNA--GVPDRYWI 125 (129)
T ss_dssp HHHTSCCEE------E--EEE----EEECSSCEEEEEEEEEEC--SSTTEEEE
T ss_pred HHHCCCCCC------E--EEE----EEECCCCEEEEEEEEEEC--CCCCEEEE
T ss_conf 997599861------5--899----994399669999999982--68997999
No 40
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.08 E-value=4.2e-11 Score=85.06 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHCCCEEEEECC-CCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECCCCEEEEE
Q ss_conf 98615942899978-98689760314666655311101342788742417-89888899998604301000100001231
Q T0536 27 LLDQLSFALCIVRN-DYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWEQKPHLLP 104 (152)
Q Consensus 27 i~~~~~~~i~i~D~-d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (152)
+.+.+..+|+++|. +|+|+++|+++++++||++++++|+++.+++|... ......++.....+...... .
T Consensus 3 ~~~~~n~ai~~~d~~~G~I~~vN~~a~~l~Gys~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 74 (114)
T 1ll8_A 3 MDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVV--------F 74 (114)
T ss_dssp SSTTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCC--------C
T ss_pred CHHHCCEEEEEEECCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE--------E
T ss_conf 40112718999999999999623899998785989992980001138005999999999999658970001--------0
Q ss_pred ECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 01223212565268888899787879997899988998147
Q T0536 105 FKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
-......+.+|..+++.+++.++..+++. .++++++||+
T Consensus 75 ~~e~~~~~kdG~~~pv~l~~~~i~~~~~~--~~v~vi~dv~ 113 (114)
T 1ll8_A 75 GTVVDIISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp SSSEEECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEEEEEECCCCEEEEEEEEEEEEEECCEE--EEEEEEEECC
T ss_conf 25988881599799999999999999947--9999999764
No 41
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.93 E-value=2.6e-10 Score=80.27 Aligned_cols=117 Identities=10% Similarity=0.022 Sum_probs=70.6
Q ss_pred HHHHHHCCCEEEEE-CCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEE
Q ss_conf 99986159428999-789868976031466665531110134278874-2417898888999986043010001000012
Q T0536 25 SELLDQLSFALCIV-RNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHL 102 (152)
Q Consensus 25 ~~i~~~~~~~i~i~-D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (152)
..++++++..++++ |.||+|+++|+++++++||++++++|+++++++ |++...+...+....... .......
T Consensus 18 e~~l~~~~~f~iv~~~~dG~I~~vN~~~~~llGys~eEl~g~~~~~lihp~d~~~~~~~l~~~~~~~------~~~~~~~ 91 (309)
T 3gdi_A 18 EYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPP------WSVCSGL 91 (309)
T ss_dssp C----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCB------CC-----
T ss_pred HHHHHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCC------CCCCCCE
T ss_conf 9999705887999997998799997899998597999985997889389888899999976531477------6533204
Q ss_pred EEECCCCCCCCCCEEEEEEEEEEEEECCC----CCEEEEEEEEEEHHHHHHHCC
Q ss_conf 31012232125652688888997878799----978999889981479986359
Q T0536 103 LPFKSSRPVSGEEEQMYQNLEVIPIHSED----GTIEHVCLCVYDVTIQASQQQ 152 (152)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~----g~v~gv~~~~~DITe~~~~eq 152 (152)
. ... ...+...++.+...+..+.. +.+..+.++..|||+++.+++
T Consensus 92 ~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dit~~~~~e~ 140 (309)
T 3gdi_A 92 D---SFT--QECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAES 140 (309)
T ss_dssp --------------CCCEEEEECCCC----CCCCEEEEEEEEEEECC-------
T ss_pred E---EEE--ECCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCHHHHHH
T ss_conf 4---455--305652378875211444345761789999889987400223445
No 42
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.46 E-value=4.4e-07 Score=60.90 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=69.5
Q ss_pred HCCCEEEEECCCCCEEEEECCHH-HHHHHHHHHHCCCCHHHHH-CCCHHH--HHHHHHHHHHCCCHHEEECCCCEEEEEE
Q ss_conf 15942899978986897603146-6665531110134278874-241789--8888999986043010001000012310
Q T0536 30 QLSFALCIVRNDYVIVKVNEYFE-SRVIFDGETMQGKNILELF-PESADY--LKRKIDTALVIESSSFSSWEQKPHLLPF 105 (152)
Q Consensus 30 ~~~~~i~i~D~d~~i~~~N~~~~-~~~g~~~~~i~G~~~~~~~-p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (152)
.+..-+.-.|.||+|+++|+++. .++||.+++++|+++++++ |++.+. .......+...+... .
T Consensus 5 ~~e~F~trh~ldg~i~~vd~~~~~~l~gy~~eelig~s~~~~~Hp~D~~~~~~~~~~~~~~~~~~~~-------t----- 72 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTAS-------S----- 72 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEE-------C-----
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHHHCCCHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCC-------C-----
T ss_conf 6486899997997199998178676608897999499198938845313566777888775168511-------3-----
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH-HHH
Q ss_conf 122321256526888889978787999789998899814-799
Q T0536 106 KSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV-TIQ 147 (152)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI-Te~ 147 (152)
..+|....+|.++|+.....+++|+.+....+++.+++| +|+
T Consensus 73 ~~yR~r~KdG~~vWv~t~~~l~~~~~~~~~~~Ii~~h~i~~e~ 115 (132)
T 1oj5_A 73 PSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDREH 115 (132)
T ss_dssp CCEEEECTTSCEEEEEEEEEEECC----CCCEEEEEEEEECC-
T ss_pred HHHEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCC
T ss_conf 4550365498099999988999827999815999999952574
No 43
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.10 E-value=4.4e-05 Score=48.91 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCEEEEECCHHHHHHHHHHHHCCC-------C-HHHHH-CCCHHHHHHHHH
Q ss_conf 99999999999999861594289997-89868976031466665531110134-------2-78874-241789888899
Q T0536 14 SNAMAKSRLLLSELLDQLSFALCIVR-NDYVIVKVNEYFESRVIFDGETMQGK-------N-ILELF-PESADYLKRKID 83 (152)
Q Consensus 14 ~~~l~~s~~~l~~i~~~~~~~i~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~-------~-~~~~~-p~~~~~~~~~~~ 83 (152)
...++++++.++++.+..|..++++| .+++..++|+.+.+++|+++++.... . +++.+ |++-........
T Consensus 25 ~~~le~~~~~~~~~a~~~~~~~~i~Dl~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihP~D~~~~~~~~~ 104 (258)
T 3clo_A 25 NGIVEQHQQFVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEY 104 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 89999999999999985788789998878889998653999839996662314543044046662589789999999999
Q ss_pred HHHHCCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEC-CCCCEEEEEEEEEEHHHH
Q ss_conf 9986043010001000012310122321256526888889978787-999789998899814799
Q T0536 84 TALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d-~~g~v~gv~~~~~DITe~ 147 (152)
..+..-.. ....+...+... ..++..+.+|.+.|+.-...++.+ ++|.+.-++++ .|++..
T Consensus 105 ~~~~~l~~-~~~~er~~y~~~-~~~R~~~~~G~y~wv~~r~~vl~~~~~g~i~~~l~~-~d~~~~ 166 (258)
T 3clo_A 105 KFFQKTFS-MSPGERLKYRGR-CRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIFCL-YSLSAD 166 (258)
T ss_dssp HHHHHHTT-SCHHHHTTEEEE-EEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEEEE-EEECSC
T ss_pred HHHHHHHH-CCHHHHHEEEEE-EEEEEECCCCCEEEEEEEEEEEECCCCCCEEECCCC-CCCCCC
T ss_conf 99998751-786541113578-999998699999999866778743899880111332-344433
No 44
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9
Probab=96.94 E-value=0.00081 Score=41.28 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 9997-8986897603146666553111013427887424
Q T0536 36 CIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFPE 73 (152)
Q Consensus 36 ~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~ 73 (152)
+++| .+++|+++|...++++|+++++++|+++.++++.
T Consensus 46 l~ld~~d~~I~~vS~N~~~llG~~peellG~~l~~ll~~ 84 (337)
T 2ool_A 46 FVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTA 84 (337)
T ss_dssp EEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred EEEECCCCEEEEECCHHHHHHCCCHHHHCCCCHHHHCCH
T ss_conf 999889997999866199883969899839988897698
No 45
>2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} SCOP: d.110.2.1 d.110.2.4 d.110.3.9
Probab=96.83 E-value=0.00044 Score=42.87 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCEEE-EEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 94289-997-89868976031466665531110134278874241
Q T0536 32 SFALC-IVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFPES 74 (152)
Q Consensus 32 ~~~i~-i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~ 74 (152)
|.|++ ++| .+++|+++|..+++++|+++++++|+++.++|+..
T Consensus 28 p~G~Ll~~d~~~~~I~~vS~n~~~lLG~~~eeLLGr~l~dLl~~~ 72 (520)
T 2vea_A 28 PHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp TTSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHHCCCHHHHCCCCHHHHCCHH
T ss_conf 880799999899989999554998869398998299778978978
No 46
>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} SCOP: d.110.2.1 d.110.3.9 PDB: 2o9b_A* 1ztu_A*
Probab=96.74 E-value=0.0016 Score=39.56 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred EEEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHH
Q ss_conf 89997-89868976031466665531110134278874241789
Q T0536 35 LCIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADY 77 (152)
Q Consensus 35 i~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~ 77 (152)
++++| .+++|+++|..+++++|+++++++|+++.+++|+....
T Consensus 56 Ll~ld~~d~~I~~vS~N~~~iLG~~peelLG~~l~~llpe~~~~ 99 (342)
T 2o9c_A 56 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPA 99 (342)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTTHHH
T ss_pred EEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHHHHH
T ss_conf 99998899949999288998859296998599889988846899
No 47
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=95.35 E-value=0.13 Score=28.11 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEE
Q ss_conf 999999999998615-9428999789868976031466665531110134278874241789888899998604301000
Q T0536 17 MAKSRLLLSELLDQL-SFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSS 95 (152)
Q Consensus 17 l~~s~~~l~~i~~~~-~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (152)
+.+-.++|+.+-+.. -..|+++|.+|+++..+.+. .+...+|.++. .++++.. .+.++...+.
T Consensus 97 ~~~~~~~L~~~~~~~~a~~i~llD~~G~viasSn~~------~~~s~vg~n~s-----~RpYf~~----Al~g~~~~~~- 160 (305)
T 3e4o_A 97 LDRINRKLEALATSAEAAVIYLIDRSGVAVAASNWQ------EPTSFVGNDYA-----FRDYFRL----AVRDGMAEHF- 160 (305)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEEEETTSBEEEETTTT------STTCCTTCBCT-----TSHHHHH----HHHHSEEEEE-
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECCCC------CCCCCCCCCCC-----CCHHHHH----HHCCCCCEEE-
T ss_conf 999999999996230721899998999999966877------87432366633-----3188999----8717860467-
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 10000123101223212565268888899787879997899988998147998
Q T0536 96 WEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQA 148 (152)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~ 148 (152)
. ... ..++..+ +...|+++ +|++.||+++..|+....
T Consensus 161 --------~---~~~--~~~~~~~--~~a~PV~~-~g~viGVvv~~v~l~~le 197 (305)
T 3e4o_A 161 --------A---MGT--VSKRPGL--YISRRVDG-PGGPLGVIVAKLEFDGVE 197 (305)
T ss_dssp --------E---ECT--TTCCEEE--EEEEEEEE-TTEEEEEEEEEECCHHHH
T ss_pred --------E---ECC--CCCCCEE--EEEEECCC-CCCEEEEEEEEECHHHHH
T ss_conf --------6---304--6676238--99752156-771479999997179999
No 48
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=92.89 E-value=0.42 Score=24.99 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCE-EEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 9999999998615942-899978986897603146666553111013427887424178988889999860430100010
Q T0536 19 KSRLLLSELLDQLSFA-LCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 19 ~s~~~l~~i~~~~~~~-i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
.-+.+++.+.+..... |+++|.+|++++-... +-+|.++.+ +... ..... +... .+.
T Consensus 36 ~l~~~~~~~~~~~~~~~i~v~D~~G~vla~~~~----------~~~G~~~~~--~~~~-------~a~~~-g~~~-~~~- 93 (131)
T 1p0z_A 36 RIKALIDPMRSFSDATYITVGDASGQRLYHVNP----------DEIGKSMEG--GDSD-------EALIN-AKSY-VSV- 93 (131)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEETTSBEEECSSG----------GGTTSBCCS--SCCH-------HHHHH-CCCE-EEE-
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCEEEECCH----------HHCCCCCCC--CCHH-------HHHHC-CCCE-EEE-
T ss_conf 999999999997397199998799879980796----------666986778--8428-------89964-9848-999-
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 00012310122321256526888889978787999789998899814799
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
..+.....+ ..+.|+++++|++.|++.+..++++.
T Consensus 94 -------------~~g~~g~~~--~~~~PV~~~~G~viGvv~Vg~~l~~i 128 (131)
T 1p0z_A 94 -------------RKGSLGSSL--RGKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp -------------EEETTEEEE--EEEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred -------------EECCCCEEE--EEEEEEECCCCCEEEEEEEEEEHHHH
T ss_conf -------------964784189--99996797999799999999885771
No 49
>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp}
Probab=91.71 E-value=0.59 Score=24.10 Aligned_cols=95 Identities=6% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCC--EEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 99999999861594--2899978986897603146666553111013427887424178988889999860430100010
Q T0536 20 SRLLLSELLDQLSF--ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 20 s~~~l~~i~~~~~~--~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
-...|+.+.+..|. ++.++|.+|.++..+.... .|.++ ....|+.... .++.....
T Consensus 53 ~~~~L~~~~~~~~~~~~i~i~d~~G~~i~~s~~~~----------~~~~~-----~~r~~~~~~~----~~~~~~is--- 110 (214)
T 3fos_A 53 MQSILEKTFDSEPRFSGLYFLNAKGDVTASTTELK----------TKVNL-----ADRSFFIKAK----ETKKTVIS--- 110 (214)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEETTCBEEEESSCCS----------SCCBC-----TTSHHHHHHH----HHCSCEEC---
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCC----------CCCCH-----HHCHHHHHHH----HCCCCCCC---
T ss_conf 99999999861877008999959997898057667----------88893-----4463677776----33774213---
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 00012310122321256526888889978787999789998899814799
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
.++. . ...+..+. ....|+++.+|++.|+++...|....
T Consensus 111 -~~~~------~--~~~g~~~i--~~s~pi~~~~G~~~Gvl~~~i~l~~l 149 (214)
T 3fos_A 111 -DSYS------S--RITGQPIF--TICVPVLDSKRNVTDYLVAAIQIDYL 149 (214)
T ss_dssp -CCEE------C--TTTCSEEE--EEEEEEECSSCCEEEEEEEEEEHHHH
T ss_pred -CEEE------E--CCCCCEEE--EEEEEEECCCCCEEEEEEEEEEHHHH
T ss_conf -3033------0--46784589--99986796899789999999649999
No 50
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=90.82 E-value=0.72 Score=23.57 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 99999999861594289997898689760314666655311101342788742417898888999986043010001000
Q T0536 20 SRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
++++-..|.+.+...+.+.|.|.. +.+- |...++..|+++... .+.++..+...+.... +
T Consensus 4 A~~yAe~i~~~~~~aV~ItD~d~i-lA~~-------G~~~~~~~~~~is~~-----------~~~vi~~~~~~~~~~~-~ 63 (123)
T 2w1r_A 4 AKEYADALYDSLGHSVLICDRDVY-IAVS-------GSSKKDYLNKSISEM-----------LERTMDQRSSVLESDA-K 63 (123)
T ss_dssp HHHHHHHHHHHHCSEEEEECSSBE-EEEE-------SSCHHHHBTCBBCHH-----------HHHHHHHCSCEEESSC-E
T ss_pred HHHHHHHHHHHHCCEEEEECCCCE-EEEE-------ECCHHHCCCCCCCHH-----------HHHHHHCCCEEEECCC-C
T ss_conf 899999999987990999748848-9998-------177465099966799-----------9999975999997688-7
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 0123101223212565268888899787879997899988998
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVY 142 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~ 142 (152)
. .+. ....... +....+.||.. +|++.|++.++.
T Consensus 64 ~--~~~-----~~~~~c~-~~~~ii~PI~~-~g~viG~l~l~~ 97 (123)
T 2w1r_A 64 S--VQL-----VNGIDED-MNSYTVGPIVA-NGDPIGAVVIFS 97 (123)
T ss_dssp E--EES-----BTTCEEE-ESEEEEEEEEE-TTEEEEEEEEEE
T ss_pred C--CCC-----CCCCCCC-CCEEEEEEEEE-CCEEEEEEEEEE
T ss_conf 6--678-----7899987-21589998998-998999999998
No 51
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=85.52 E-value=1.6 Score=21.47 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 99999999998615942899978986897603146666553111013427887424178988889999860430100010
Q T0536 18 AKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 18 ~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
..++++.+.+.+++..++++.|.|..+-++.- ..++.+|+++.+. .+.++..+...... .
T Consensus 57 ~~A~eyaeiL~e~tg~~V~ITDrd~ILA~aG~--------g~de~~~k~IS~~-----------le~~i~~rk~~~~~-~ 116 (178)
T 2w1t_A 57 DFAKEYADALYDSLGHSVLICDRDVYIAVSGS--------SKKDYLNKSISEM-----------LERTMDQRSSVLES-D 116 (178)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECSSBEEEEESS--------CHHHHBTCBBCHH-----------HHHHHHTCSCEEES-S
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCEEEEEECC--------CCHHHCCCCCCHH-----------HHHHHHCCCEEEEC-C
T ss_conf 89999999999864980899625349998578--------8088759805699-----------99999849889826-8
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 000123101223212565268888899787879997899988998
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVY 142 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~ 142 (152)
.... + ........ +....+.||.. +|.+.|.+.+..
T Consensus 117 ~~~i--~-----~~~~~~c~-l~s~vI~PI~~-~gdviGav~l~~ 152 (178)
T 2w1t_A 117 AKSV--Q-----LVNGIDED-MNSYTVGPIVA-NGDPIGAVVIFS 152 (178)
T ss_dssp CCCE--E-----SBTTCEEC-CSEEEEEEEEE-TTEEEEEEEEEE
T ss_pred CCCC--C-----CCCCCCCC-EEEEEEEEEEE-CCEEEEEEEEEE
T ss_conf 8642--1-----23689987-00489998999-994678999998
No 52
>3g6o_A Bacteriophytochrome; alpha/beta structure, PAS domain, chromophore, kinase, phosphoprotein, photoreceptor protein, receptor; HET: BLA; 2.85A {Pseudomonas aeruginosa} PDB: 3ibr_A* 3c2w_A*
Probab=78.99 E-value=2.2 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCE-EEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 942-89997898689760314666655311101342788742417
Q T0536 32 SFA-LCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA 75 (152)
Q Consensus 32 ~~~-i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~ 75 (152)
|.| ++++|+++.|+.++.-..+++|++++.+.|.....+.++..
T Consensus 25 phG~Ll~ld~~~~I~~vS~N~~~~lg~~~~~l~~~~~~~~~~~~~ 69 (505)
T 3g6o_A 25 PHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVL 69 (505)
T ss_dssp TTEEEEEECTTCBEEEEETTHHHHSSCCCCTTCBCCHHHHCHHHH
T ss_pred CCEEEEEEECCCCEEEEECCHHHHHCCCCCCCCCCCHHHCCHHHH
T ss_conf 872899990799589992779987389852035648676196899
No 53
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=64.30 E-value=6.4 Score=17.90 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=22.9
Q ss_pred EEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 997878799978999889981479986
Q T0536 123 EVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 123 ~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
.+.|+++.+|++.|++.+..++++...
T Consensus 109 ~~~pi~~~~G~iiGvV~Vg~~l~~v~~ 135 (142)
T 3by8_A 109 VFTPIYDENHKQIGVVAIGLELSRVTQ 135 (142)
T ss_dssp EEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred EEEEEECCCCEEEEEEEEEEEHHHHHH
T ss_conf 995106579959999999988899999
No 54
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=61.08 E-value=7.3 Score=17.54 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCC--CEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 9999999986159--42899978986897603146666553111013427887424178988889999860430100010
Q T0536 20 SRLLLSELLDQLS--FALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 20 s~~~l~~i~~~~~--~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
.+..|..+....| ..+.++|++|+++..+..- ..|-++ ...+++.. .......... .
T Consensus 56 ~~~~l~~~~~~~~~~~~i~l~d~~G~~~~~~~~~----------~~~~~~-----~~r~~~~~----~~~~~~~~~~--~ 114 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQLTYASVKP----------VPALDN-----SDRSYFRY----HRANDDHTLL--I 114 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSBEEEESSSS----------EECCBC-----TTSHHHHH----HHHCCCCCCE--E
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCC----------CCCCCC-----CHHHHHHH----HHHCCCCCEE--E
T ss_conf 9999999985297715999995999988326888----------777883-----24278999----9847998459--8
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 000123101223212565268888899787879997899988998147998
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQA 148 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~ 148 (152)
..++ . .+ ..+.... ....|+++.+|++.|+++...|+....
T Consensus 115 s~~~----~--~~--~~g~~~~--~i~~pi~~~~g~~~Gvl~~~l~l~~l~ 155 (254)
T 3lif_A 115 TGPI----Q--SR--TSGVWVF--VVSRRLETTDGKFFGVVVATIESEYFS 155 (254)
T ss_dssp EEEE----E--CT--TTCCEEE--EEEEEEECTTCCEEEEEEEEECHHHHH
T ss_pred EEEE----E--CC--CCCCCCE--EEEEEECCCCCCEEEEEEEECCHHHHH
T ss_conf 0037----6--26--7895304--689873168886679999846889999
No 55
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl cyclase, transferase; 2.00A {Nostoc punctiforme pcc 73102} PDB: 2p04_A
Probab=50.98 E-value=6.5 Score=17.83 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 986159428999789868976031466665531110134278874241789888899998604
Q T0536 27 LLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIE 89 (152)
Q Consensus 27 i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~ 89 (152)
+.+.-|-. +++|.+++|+.+-....++++ +...|+++.|+|.=.++.....++.+....
T Consensus 7 f~~~FPfH-l~~d~~~~I~~~G~~L~k~~p---~~~~G~~~~d~F~l~rP~i~~tf~~i~~~~ 65 (115)
T 2p08_A 7 LAKAFPFH-FAFSRNREIVQTGEVLERISP---EPLVGKLIEQHFQINRPKILIDFDAISKQP 65 (115)
T ss_dssp HHHHCTTC-EEECTTCBEEEECHHHHHHCS---SCCTTSBGGGTEEEEESSCCSCHHHHHTCT
T ss_pred HHHHCCEE-EEECCCCEEEECCCHHHHHCC---CCCCCCCHHHEEEECCCCCCEEHHHHHHHC
T ss_conf 98449989-999999989982654987785---765799778978834798420899998626
No 56
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=34.98 E-value=19 Score=15.01 Aligned_cols=81 Identities=10% Similarity=0.045 Sum_probs=41.6
Q ss_pred HCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCC
Q ss_conf 15942899978986897603146666553111013427887424178988889999860430100010000123101223
Q T0536 30 QLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSR 109 (152)
Q Consensus 30 ~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (152)
+.|+-+++.|.+|.+..- +-...+|+...++ ......+... ..|. .....
T Consensus 79 ~~lD~~fI~d~~G~v~~d--gn~~~~gi~~~~L----------------~~l~~~v~~s-----~~w~----~i~t~--- 128 (270)
T 3c38_A 79 NAPDLRFISSHDNILWDD--GNASFYGIAQQEL----------------NKLIRRVAIS-----GNWH----LVQTP--- 128 (270)
T ss_dssp GCCSEEEEEETTEEEEEC--SCGGGGTCCHHHH----------------HHHHHHSCSS-----SSCE----EEEEC---
T ss_pred CCCCEEEEEECCCCEEEC--CCCCCCCCCHHHH----------------HHHHCCCCCC-----CEEE----EEECC---
T ss_conf 786689999389988976--8851358776888----------------8641034665-----3179----99626---
Q ss_pred CCCCCCEEEEEEEEEEEEECCC-CCEEEEEEEEEE
Q ss_conf 2125652688888997878799-978999889981
Q T0536 110 PVSGEEEQMYQNLEVIPIHSED-GTIEHVCLCVYD 143 (152)
Q Consensus 110 ~~~~~~~~~~~~~~~~Pi~d~~-g~v~gv~~~~~D 143 (152)
......+.-+...|+.+.+ |++.|.+..+.-
T Consensus 129 ---~~~~~~~~Lv~~~PIid~~sGeVIG~Ly~~~V 160 (270)
T 3c38_A 129 ---SEGKSVHILMRRSSLIEAGTGQVVGYLYVGIV 160 (270)
T ss_dssp ---CSSSCEEEEEEEEEECCCC-CCCCEEEEEEEE
T ss_pred ---CCCCCEEEEEEEECCEECCCCCEEEEEEEEEE
T ss_conf ---77874068999774174898739999999999
No 57
>3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=29.41 E-value=24 Score=14.45 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=17.3
Q ss_pred EEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 9978787999789998899814799
Q T0536 123 EVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 123 ~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
...|+.|++|++.|++ ..+||...
T Consensus 259 ~~l~Vvd~~g~l~Giv-T~~Dil~a 282 (296)
T 3ddj_A 259 GSLLILNKDNTIRGII-TERDLLIA 282 (296)
T ss_dssp SEEEEECTTSCEEEEE-EHHHHHHH
T ss_pred CEEEEECCCCEEEEEE-EHHHHHHH
T ss_conf 8899990799899998-89999999
No 58
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=24.84 E-value=29 Score=13.95 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=5.5
Q ss_pred EEEECCCCCEEEE
Q ss_conf 8999789868976
Q T0536 35 LCIVRNDYVIVKV 47 (152)
Q Consensus 35 i~i~D~d~~i~~~ 47 (152)
++++|++|+|+|+
T Consensus 140 tfVID~~G~V~y~ 152 (224)
T 3keb_A 140 IILADAANVVHYS 152 (224)
T ss_dssp EEEECTTCBEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9999899979999
Done!