Query T0536 sensory box sensor histidine kinase, Vibrio cholerae, 152 residues
Match_columns 152
No_of_seqs 135 out of 6694
Neff 9.8
Searched_HMMs 11830
Date Fri May 21 18:06:32 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0536.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0536.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08448 PAS_4: PAS fold; Int 99.7 7.4E-17 6.3E-21 117.9 8.8 109 28-149 1-110 (110)
2 PF00989 PAS: PAS fold; Inter 99.6 7.5E-15 6.3E-19 105.9 11.6 112 22-144 1-113 (113)
3 PF08447 PAS_3: PAS fold; Int 98.4 7.4E-07 6.3E-11 57.9 9.3 85 44-141 1-91 (91)
4 PF08670 MEKHLA: MEKHLA domain 97.5 0.0012 9.8E-08 38.7 11.6 112 20-144 30-145 (148)
5 PF07310 PAS_5: PAS domain; I 95.2 0.047 4E-06 29.0 7.9 102 25-141 31-136 (137)
6 PF08348 PAS_6: YheO-like PAS 91.7 0.14 1.2E-05 26.2 5.3 39 111-151 75-113 (118)
7 PF08446 PAS_2: PAS fold; Int 90.3 0.12 9.8E-06 26.7 3.7 45 35-79 18-65 (108)
8 PF05228 CHASE4: CHASE4 domain 81.0 1.3 0.00011 20.4 6.4 29 122-150 115-145 (161)
9 PF09884 DUF2111: Uncharacteri 63.0 3.5 0.0003 17.7 4.0 24 121-145 60-83 (84)
10 PF12282 H_kinase_N: Signal tr 54.0 5.1 0.00043 16.8 8.6 106 21-149 26-132 (150)
11 PF06785 UPF0242: Uncharacteri 42.5 7.7 0.00065 15.7 5.0 52 19-71 284-336 (401)
12 PF09695 YtfJ_HI0045: Bacteria 38.2 8.7 0.00073 15.4 2.6 17 123-139 140-156 (174)
13 PF06239 ECSIT: Evolutionarily 25.6 7.8 0.00066 15.7 0.6 65 7-73 33-99 (228)
No 1
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3fc7_A 3fg8_F 2r78_D 3bwl_D.
Probab=99.67 E-value=7.4e-17 Score=117.92 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=91.7
Q ss_pred HHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC-CHHHHHHHHHHHHHCCCHHEEECCCCEEEEEEC
Q ss_conf 8615942899978986897603146666553111013427887424-178988889999860430100010000123101
Q T0536 28 LDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHLLPFK 106 (152)
Q Consensus 28 ~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (152)
||++|++++++|.+|+|+++|+++++++|+++++++|+++.+++|. ..+.+...+..++..+.......
T Consensus 1 l~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 70 (110)
T PF08448_consen 1 LDNIPDGIFILDPDGRIIYANRAFEDLFGYSPEELLGKPLWELFPPEDREDFQAALRQALEGGKPVQFEE---------- 70 (110)
T ss_dssp HHHSSSEEEEEETT-BEEEE-HHHHHHHT--HHHHTT-BGGGTSCCHHHHHHHHHHHHHHHT-EEEEEEE----------
T ss_pred CCCCCHHHEEECCCCEEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEE----------
T ss_conf 9998715289989895997769999885929899859944784771000236889999864698089999----------
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 2232125652688888997878799978999889981479986
Q T0536 107 SSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
.....+...|+.+++.|++|.+|++.|++++++||||+|+
T Consensus 71 ---~~~~~g~~~~~~~~~~p~~d~~g~~~~~i~~~~DiTe~kr 110 (110)
T PF08448_consen 71 ---EIHRDGEERWFEVTLSPVRDEDGEVQGVIVIARDITERKR 110 (110)
T ss_dssp ---EESS---EEEEEEEEEEC-CTTTTTCEEEEEEEEETT---
T ss_pred ---EEECCCCCEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf ---9952787199999999968799989799999997874319
No 2
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1ll8_A 1wa9_B 3gec_A 1v9z_B 1s67_U 1vb6_A 1s66_L 1v9y_B 3b33_A 2w0n_A ....
Probab=99.59 E-value=7.5e-15 Score=105.88 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHHCCCHHEEECCCCE
Q ss_conf 99999986159428999789868976031466665531110134278874241-78988889999860430100010000
Q T0536 22 LLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
Q Consensus 22 ~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (152)
++|+++++++|+|++++|.+|+|++||+++++++|+++++++|+++.++++.. .......+...+..+.....
T Consensus 1 e~~~~ii~~~~~~i~v~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (113)
T PF00989_consen 1 ERFRAIIESSPDGIFVVDADGRILYVNSAAEELFGYSPEELIGKSIFDLFHPDDREEFRDQLSQLLQQGESSES------ 74 (113)
T ss_dssp HHHHHHHHTTSSEEEEEETTSBEEEETHHHHHHCTS-HHHHTTSBGGGGCSTTTHHHHHHHHHHHHHHTC-BEE------
T ss_pred CHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEE------
T ss_conf 97899977384429999595989999889999879595884799699945852366799999999983898346------
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 12310122321256526888889978787999789998899814
Q T0536 101 HLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
+...+. ..++..+|+.++..|+++.+|++.|++++++||
T Consensus 75 ~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 75 FEVRFN-----LRDGSIIWIEVSASPIRDEDGEIIGIIGIFRDI 113 (113)
T ss_dssp EEEEEE-----ESTSCEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEE-----ECCCCEEEEEEEEEEEEECCCCEEEEEEEEECC
T ss_conf 899999-----449969999999999991999999999999919
No 3
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL , FAD in the redox potential sensor NifL , and a 4-hydroxycinnamyl chromophore in photoactive yellow protein . Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses . ; PDB: 3h9w_A 3eeh_A 2vlg_C 1g28_C 1jnu_D 1n9n_A 1n9l_A 1n9o_A 2a24_A 3f1o_A ....
Probab=98.42 E-value=7.4e-07 Score=57.86 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=62.8
Q ss_pred EEEEECCHHHHHHHHHHHHCCCC----HHHHH-CCCHHHHHHHHHHH-HHCCCHHEEECCCCEEEEEECCCCCCCCCCEE
Q ss_conf 89760314666655311101342----78874-24178988889999-86043010001000012310122321256526
Q T0536 44 IVKVNEYFESRVIFDGETMQGKN----ILELF-PESADYLKRKIDTA-LVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQ 117 (152)
Q Consensus 44 i~~~N~~~~~~~g~~~~~i~G~~----~~~~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (152)
|++||+.+++++|++++++ |.+ +.+++ |++...+...+..+ ...+. ++... .+..+.+|..
T Consensus 1 ~~~~s~~~~~i~Gy~~~e~-~~~~~~~~~~~ihpeD~~~~~~~~~~~~~~~~~---------~~~~e---~r~~~~~G~~ 67 (91)
T PF08447_consen 1 IVYVSDAFYEILGYSPEEL-GKSSPDTWFDLIHPEDRERVRQAIERASLRNGE---------PFSFE---YRIRTKDGSY 67 (91)
T ss_dssp EEEE-THHHHHHT--HHHH-TCB-HHHGGGGBGHHHHHHHHHHHHHHHHHCTT---------CEEEE---EEEEGTTSTE
T ss_pred CEEEEHHHHHHHCCCHHHH-CCCCHHHHHHEECCCCHHHHHHHHHHHHCCCCC---------CEEEE---EEEECCCCCE
T ss_conf 9998079999879998998-467777897627912499999998754303455---------23599---9999799989
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 888889978787999789998899
Q T0536 118 MYQNLEVIPIHSEDGTIEHVCLCV 141 (152)
Q Consensus 118 ~~~~~~~~Pi~d~~g~v~gv~~~~ 141 (152)
+|+..+..|++|++|++.++++++
T Consensus 68 ~wv~~~~~~~~d~~g~~~~~~G~~ 91 (91)
T PF08447_consen 68 RWVHSRGRPIRDENGKPVRLVGVN 91 (91)
T ss_dssp EEEEEEEEEEETTTTCEEEEEEEE
T ss_pred EEEEEEEEEEECCCCCEEEEEEEC
T ss_conf 999999999999999999999989
No 4
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=97.48 E-value=0.0012 Score=38.68 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHCCCEEEEEC--CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 99999999861594289997--89868976031466665531110134278874241-7898888999986043010001
Q T0536 20 SRLLLSELLDQLSFALCIVR--NDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALVIESSSFSSW 96 (152)
Q Consensus 20 s~~~l~~i~~~~~~~i~i~D--~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (152)
++..++.+.+ .|.+|+..+ .+=+++|.|+++.++++++-+++.|.|..-.+++. .......+..+...|-...
T Consensus 30 ~~~~~~~L~~-~p~ail~h~~~~dPvf~yaN~aaL~m~E~tw~~l~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~--- 105 (148)
T PF08670_consen 30 SEELAKALWH-APFAILCHSTKADPVFIYANQAALDMWETTWDELQDLPSRKTAEEPERKERQSLLDQVMQQGYACL--- 105 (148)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCCCEEEECCHHHHHHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCC---
T ss_conf 6899999971-997799847888976876108999997188999846977651693508999988999998185007---
Q ss_pred CCCEEEEEECCCCCCCCCCEE-EEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 000012310122321256526-888889978787999789998899814
Q T0536 97 EQKPHLLPFKSSRPVSGEEEQ-MYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
+... .++..|.. .+-+.++-.+.|++|...|...++.+=
T Consensus 106 --------y~GI-Riss~Grrf~ie~A~~W~v~d~~g~~~gqAa~F~nW 145 (148)
T PF08670_consen 106 --------YSGI-RISSMGRRFSIEQAVAWKVLDEDGNYHGQAAMFSNW 145 (148)
T ss_pred --------CCEE-EECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEE
T ss_conf --------8857-882899768980269987885788889999996115
No 5
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=95.19 E-value=0.047 Score=29.00 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=66.3
Q ss_pred HHHHHHCCCEEEE-ECC--CCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCE
Q ss_conf 9998615942899-978--9868976031466665531110134278874-24178988889999860430100010000
Q T0536 25 SELLDQLSFALCI-VRN--DYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
Q Consensus 25 ~~i~~~~~~~i~i-~D~--d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (152)
..|-.-+|..+++ .+. +.++..+-....+.+|. ++.|+++.+++ |+....+...+..+.....+.......
T Consensus 31 ~~i~~lLp~i~ile~~~~~~~r~RLaGt~i~~~~G~---d~tG~~~~~l~~~~~~~~~~~~~~~v~~~~~p~~~~~~~-- 105 (137)
T PF07310_consen 31 AEIPRLLPHIFILEVEDPGRFRYRLAGTRIVELFGR---DLTGRRLDELFAPEDRERVFRALRAVVDEPCPVRARGRA-- 105 (137)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEECHHHHHHHCC---CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEE--
T ss_conf 899987196299998289957999966899998199---888989778418166999999999998189529999787--
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 12310122321256526888889978787999789998899
Q T0536 101 HLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCV 141 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~ 141 (152)
....+..+.+....-|+.+.+|.+..+++++
T Consensus 106 ----------~~~~~~~~~~e~l~LPL~~~~g~v~~ilG~l 136 (137)
T PF07310_consen 106 ----------RTEDGRYLRFERLLLPLRDDDGEVDRILGAL 136 (137)
T ss_pred ----------ECCCCCEEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf ----------2489983355689723588999806797723
No 6
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=91.73 E-value=0.14 Score=26.16 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHC
Q ss_conf 12565268888899787879997899988998147998635
Q T0536 111 VSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
Q Consensus 111 ~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~~e 151 (152)
.+.+|+.+- .+..+++|++|++.|.+|+=.|+|.-..++
T Consensus 75 ~~~dGr~lk--SsT~~ird~~g~~iG~LCIN~D~s~~~~~~ 113 (118)
T PF08348_consen 75 RTKDGRTLK--SSTIFIRDENGKPIGALCINFDISALEQAQ 113 (118)
T ss_pred ECCCCCEEE--EEEEEEECCCCCEEEEEEEEECCHHHHHHH
T ss_conf 789998989--999999999999999999975767899999
No 7
>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs . The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0007600 sensory perception, 0018298 protein-chromophore linkage, 0045449 regulation of transcription; PDB: 1ztu_A 2o9b_A 2o9c_A 2ool_A 2vea_A 3c2w_F.
Probab=90.26 E-value=0.12 Score=26.67 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEEEC-CCCCEEEEECCHHHHHHHH-HHHHCCCCHHHHHCCC-HHHHH
Q ss_conf 89997-8986897603146666553-1110134278874241-78988
Q T0536 35 LCIVR-NDYVIVKVNEYFESRVIFD-GETMQGKNILELFPES-ADYLK 79 (152)
Q Consensus 35 i~i~D-~d~~i~~~N~~~~~~~g~~-~~~i~G~~~~~~~p~~-~~~~~ 79 (152)
++++| .+++|+.+..-..+++|.+ +++++|+++.++|+.. ...+.
T Consensus 18 LLa~d~~~~~I~~~SeN~~~~lg~~~~~~llG~~l~~ll~~~~~~~l~ 65 (108)
T PF08446_consen 18 LLALDPPDLRIIQASENIADLLGIPPPEDLLGRPLSDLLSPESAHRLR 65 (108)
T ss_dssp EEEEETTTTEEEEEETTHHHHHSS--HCCHTT-CHHHHSCCCCHHHHH
T ss_pred EEEEECCCCEEEEECCCHHHHHCCCCHHHHCCCCHHHHHCHHHHHHHH
T ss_conf 999987898899986698998587320645189899985977899999
No 8
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognized by CHASE4 domains are not known at this time .
Probab=81.01 E-value=1.3 Score=20.37 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.1
Q ss_pred EEEEEEECC--CCCEEEEEEEEEEHHHHHHH
Q ss_conf 899787879--99789998899814799863
Q T0536 122 LEVIPIHSE--DGTIEHVCLCVYDVTIQASQ 150 (152)
Q Consensus 122 ~~~~Pi~d~--~g~v~gv~~~~~DITe~~~~ 150 (152)
++..||... .|...|++++++.+++....
T Consensus 115 vaa~pI~~s~~~~~~~g~Lv~~r~ld~~~l~ 145 (161)
T PF05228_consen 115 VAAAPILPSDGSGPPPGYLVFGRYLDPAFLA 145 (161)
T ss_pred EEEEEEECCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 9998657699988877799999985999999
No 9
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111)
Probab=62.96 E-value=3.5 Score=17.75 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 8899787879997899988998147
Q T0536 121 NLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 121 ~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
.+...|+++.+|++.+.++++ |+|
T Consensus 60 pVvVaPI~~~dg~viaAiGIV-Dlt 83 (84)
T PF09884_consen 60 PVVVAPIKDEDGKVIAAIGIV-DLT 83 (84)
T ss_pred EEEEEEEECCCCCEEEEEEEE-ECC
T ss_conf 389986665899699998998-715
No 10
>PF12282 H_kinase_N: Signal transduction histidine kinase
Probab=53.98 E-value=5.1 Score=16.82 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEECCH-HHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCC
Q ss_conf 9999999861594289997898689760314-666655311101342788742417898888999986043010001000
Q T0536 21 RLLLSELLDQLSFALCIVRNDYVIVKVNEYF-ESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQK 99 (152)
Q Consensus 21 ~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~-~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (152)
.-++-+=+..+..-+++-..++.++.+=++- ..-.-.-.++++|+.... + ....+...+.++....
T Consensus 26 ~wqllADLsfADl~lwv~~~~~~~i~VAq~RP~t~~T~y~~dvVG~~~~~---~----~~p~v~~a~~~g~~~r------ 92 (150)
T PF12282_consen 26 DWQLLADLSFADLFLWVPTRDGDFIVVAQARPSTGPTLYKDDVVGKVAPR---E----NEPAVDRAFETGRISR------ 92 (150)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC---C----CCHHHHHHHHHCCEEE------
T ss_conf 89998776418799998859999999997689999864625623630271---0----0489999998396121------
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 01231012232125652688888997878799978999889981479986
Q T0536 100 PHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
...+....+. .....+.|++.. |++.||+..=.|++.++.
T Consensus 93 -------~~~~~~~~~~--~v~~~~~PVr~~-g~vIaVl~~etnl~~~r~ 132 (150)
T PF12282_consen 93 -------DSKARWQGGV--PVRQEAVPVRND-GRVIAVLIRETNLSEQRT 132 (150)
T ss_pred -------CCCCCCCCCC--EEEEEEEEEEEC-CEEEEEEEEECCCCCCCC
T ss_conf -------5785321782--367999747889-999999999736444556
No 11
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.50 E-value=7.7 Score=15.73 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999999999861594289997-89868976031466665531110134278874
Q T0536 19 KSRLLLSELLDQLSFALCIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELF 71 (152)
Q Consensus 19 ~s~~~l~~i~~~~~~~i~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~ 71 (152)
..+++|.++=+.---.+++.- .+.+.+|+|.-|-.++||..++.+... .|+.
T Consensus 284 ecRqLFDnLreEnlGmlfVya~qsQr~vFAN~lfKtwtGy~~edfl~~~-~diV 336 (401)
T PF06785_consen 284 ECRQLFDNLREENLGMLFVYAPQSQRAVFANSLFKTWTGYGAEDFLSDF-SDIV 336 (401)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHC-HHHH
T ss_conf 9999975554512866999751037899878888887524699987312-2889
No 12
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045)
Probab=38.16 E-value=8.7 Score=15.41 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=10.3
Q ss_pred EEEEEECCCCCEEEEEE
Q ss_conf 99787879997899988
Q T0536 123 EVIPIHSEDGTIEHVCL 139 (152)
Q Consensus 123 ~~~Pi~d~~g~v~gv~~ 139 (152)
+..-+.|.+|.|..+-.
T Consensus 140 SaivVlDK~G~V~f~k~ 156 (174)
T PF09695_consen 140 SAIVVLDKQGKVLFVKE 156 (174)
T ss_pred CEEEEECCCCCEEEEEC
T ss_conf 45999958877999876
No 13
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signaling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signaling pathways between TRAF-6 and MEKK-1 .
Probab=25.60 E-value=7.8 Score=15.70 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHH--HHHHHHHHCCCCHHHHHCC
Q ss_conf 899999999999999999999861594289997898689760314666--6553111013427887424
Q T0536 7 HENLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESR--VIFDGETMQGKNILELFPE 73 (152)
Q Consensus 7 ~e~l~~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~--~g~~~~~i~G~~~~~~~p~ 73 (152)
.+++..+...-.+.+.-|-.+++.-...= ....|.+.+.|.|...| +|+..+-.+-+.+.++||.
T Consensus 33 ~~~~f~~~~~~~r~K~~f~~~ie~F~~rd--~~rRgHVeFI~aAL~~M~Efgve~DL~vYk~LldVFPK 99 (228)
T PF06239_consen 33 HEEIFERAEPQKRTKDSFLEAIEMFKERD--VRRRGHVEFIYAALKKMPEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 68888887653411999999999998357--76667299999999850760885539999999976777
Done!