Query T0536 sensory box sensor histidine kinase, Vibrio cholerae, 152 residues
Match_columns 152
No_of_seqs 135 out of 6694
Neff 9.8
Searched_HMMs 15564
Date Fri May 21 18:06:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0536.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0536.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ew0a_ d.110.3.2 (A:) Histidi 99.7 3.3E-17 2.1E-21 120.8 9.9 127 9-145 3-130 (130)
2 d1n9la_ d.110.3.6 (A:) Putativ 99.6 5.5E-15 3.5E-19 107.4 10.5 104 31-146 2-109 (109)
3 d1bywa_ d.110.3.6 (A:) Erg pot 99.5 1.1E-14 7.4E-19 105.5 8.9 102 34-147 3-110 (110)
4 d1jnua_ d.110.3.6 (A:) Photore 99.5 1.7E-13 1.1E-17 98.4 9.5 99 34-144 2-104 (104)
5 d1v9ya_ d.110.3.2 (A:) Direct 99.5 3.4E-13 2.2E-17 96.7 10.8 111 23-143 2-113 (113)
6 d1p97a_ d.110.3.7 (A:) Hypoxia 99.5 1.1E-13 6.8E-18 99.7 8.0 107 31-149 3-113 (114)
7 d1xj3a1 d.110.3.2 (A:154-259) 99.4 4.9E-13 3.1E-17 95.7 9.8 105 33-147 1-106 (106)
8 d1nwza_ d.110.3.1 (A:) Photoac 99.3 9.7E-13 6.3E-17 93.9 5.2 108 21-144 16-125 (125)
9 d1nwza_ d.110.3.1 (A:) Photoac 99.3 1.7E-12 1.1E-16 92.4 4.9 114 15-144 9-125 (125)
10 d1mzua_ d.110.3.1 (A:) PYP dom 99.1 1.5E-11 9.5E-16 86.8 4.5 96 23-130 4-101 (110)
11 d1ll8a_ d.110.3.5 (A:) N-termi 99.0 1.6E-10 1E-14 80.5 5.1 109 27-145 3-113 (114)
12 d1oj5a_ d.110.3.8 (A:) PAS dom 98.5 1.7E-07 1.1E-11 62.5 7.4 97 34-142 4-104 (109)
13 d2oola2 d.110.3.9 (A:26-139) S 96.6 0.0014 8.7E-08 39.0 4.7 46 34-79 19-66 (114)
14 d1p0za_ d.110.6.1 (A:) Sensor 95.6 0.069 4.4E-06 28.7 9.2 93 18-147 35-128 (131)
15 d2o9ca2 d.110.3.9 (A:4-130) Ba 94.6 0.028 1.8E-06 31.1 4.9 44 32-75 34-79 (127)
16 d2veaa3 d.110.3.9 (A:4-130) Ph 91.9 0.044 2.8E-06 29.9 2.3 43 32-74 25-69 (127)
17 d1p0za_ d.110.6.1 (A:) Sensor 89.5 0.65 4.1E-05 22.9 9.4 92 19-147 36-128 (131)
18 d2p7ja2 d.110.6.2 (A:9-180) GG 85.4 1.1 7.3E-05 21.4 11.0 113 17-147 53-168 (172)
19 d3c2wa3 d.110.3.9 (A:5-117) Ba 82.1 0.95 6.1E-05 21.9 4.2 39 34-73 24-62 (113)
20 d3by8a1 d.110.6.1 (A:46-178) F 75.6 2.5 0.00016 19.4 6.1 28 122-149 102-129 (133)
21 d1smpi_ b.61.2.1 (I:) Metallop 46.9 7.2 0.00046 16.6 2.7 19 32-50 62-81 (100)
No 1
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.71 E-value=3.3e-17 Score=120.76 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC-HHHHHHHHHHHHH
Q ss_conf 999999999999999999986159428999789868976031466665531110134278874241-7898888999986
Q T0536 9 NLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPES-ADYLKRKIDTALV 87 (152)
Q Consensus 9 ~l~~~~~~l~~s~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~-~~~~~~~~~~~~~ 87 (152)
.|.+.+++|++++.+|+++++++|+||+++|.+|+|++||+++++++||++++++|+++.+++|.. .......++..+.
T Consensus 3 ~l~~~e~~l~~~e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1ew0a_ 3 HMLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69999999999999999999719772999908964998788877751699889628752233331026778899999997
Q ss_pred CCCHHEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 0430100010000123101223212565268888899787879997899988998147
Q T0536 88 IESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
.+...... ....+.+ ...+|..+|+.+++.|+.+.++ ..++++++|||
T Consensus 83 ~~~~~~~~---~~~e~~~-----~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rDIT 130 (130)
T d1ew0a_ 83 TGEKRIIG---IDRVVSG-----QRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTT---SCEEEEE-----ECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred HCCCCCCC---CEEEEEE-----ECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECC
T ss_conf 18875444---1015889-----8589979999999999997993--89999999787
No 2
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.59 E-value=5.5e-15 Score=107.41 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEEC
Q ss_conf 594289997---89868976031466665531110134278874-24178988889999860430100010000123101
Q T0536 31 LSFALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFK 106 (152)
Q Consensus 31 ~~~~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (152)
+..++++.| +||+|++||++|++++||++++++|+++..++ |+........+...+..+.. +...+.
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~---------~~~e~~ 72 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEA---------CSVRLL 72 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC---------EEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---------EEEEEE
T ss_conf 66569999598998969999589999888699998587300311355787784223457653985---------031278
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 2232125652688888997878799978999889981479
Q T0536 107 SSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTI 146 (152)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe 146 (152)
. .+.+|..+|..+++.|++|++|++.+++++++|||.
T Consensus 73 ~---~~kdG~~~w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 73 N---YRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp E---ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred E---EECCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 8---706883999998998899999999999999997799
No 3
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=1.1e-14 Score=105.49 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=75.9
Q ss_pred EEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH---CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECC
Q ss_conf 289997---89868976031466665531110134278874---241789888899998604301000100001231012
Q T0536 34 ALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF---PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKS 107 (152)
Q Consensus 34 ~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (152)
.+++.| +|+.|++||++|++++|+++++++|+++.+.+ |+........+...+..+.+ +...+
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~e~-- 71 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEE---------RKVEI-- 71 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCC---------EEEEE--
T ss_pred EEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCCCCCEEEHEECCCCCCCCHHHCCCCC---------CCCEE--
T ss_conf 1999759899998999948999985998889533674311210100000000010000001211---------11100--
Q ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 2321256526888889978787999789998899814799
Q T0536 108 SRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
+..+.++...|+.+++.|++|++|++.+++++++||||+
T Consensus 72 -~~~~~~g~~~w~~~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 72 -AFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp -EEECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred -EEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf -022013220112336778998999999999999978899
No 4
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.46 E-value=1.7e-13 Score=98.41 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=76.3
Q ss_pred EEEEEC---CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCC
Q ss_conf 289997---89868976031466665531110134278874-24178988889999860430100010000123101223
Q T0536 34 ALCIVR---NDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSR 109 (152)
Q Consensus 34 ~i~i~D---~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (152)
.+++.| +||+|+|+|++|++++|+++++++|+++.+++ |+..+.....+......+... ...+ +
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~e~---~ 69 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDV---------TVQV---L 69 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE---------EEEE---E
T ss_pred EEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCEE---------EEEE---E
T ss_conf 599985999989899996899998886989977862100101100167776423565259635---------7689---9
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 21256526888889978787999789998899814
Q T0536 110 PVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 110 ~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
....+++.+|..+++.|++|++|++.|++++++||
T Consensus 70 ~~~~dg~~~~~~~~~~pi~d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 70 NYTKGGRAFWNLFHLQVMRDENGDVQYFIGVQQEM 104 (104)
T ss_dssp EECTTSCEEEEEEEEEEECTTTSSCCEEEEEEEEC
T ss_pred EEECCCCEEEEEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 99605542898878888999999999999999829
No 5
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.46 E-value=3.4e-13 Score=96.68 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=78.9
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECCCCEE
Q ss_conf 99999861594289997898689760314666655311101342788742417-89888899998604301000100001
Q T0536 23 LLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWEQKPH 101 (152)
Q Consensus 23 ~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (152)
.|.++++++++||+++|.+|+|+++|+++++++||++++++|+++..++|... ..................... ..
T Consensus 2 ~~~~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 78 (113)
T d1v9ya_ 2 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGM---SR 78 (113)
T ss_dssp CHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------------C
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CE
T ss_conf 789998708471899929999999861686652013666537520003321111110000011001243200110---00
Q ss_pred EEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 231012232125652688888997878799978999889981
Q T0536 102 LLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~D 143 (152)
. ......+|..+|+.+++.|+.+.+|. .++++++|
T Consensus 79 --e---~~~~~~dG~~~~v~~~~~~i~~~~~~--~~~~v~rD 113 (113)
T d1v9ya_ 79 --E---LQLEKKDGSKIWTRFALSKVSAEGKV--YYLALVRD 113 (113)
T ss_dssp --E---EEEECTTSCEEEEEEEEEEEEETTEE--EEEEEEEC
T ss_pred --E---EEECCCCCEEEEEEEEEEEEEECCEE--EEEEEEEC
T ss_conf --2---44102454169999999999989908--99999999
No 6
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=1.1e-13 Score=99.68 Aligned_cols=107 Identities=6% Similarity=0.056 Sum_probs=81.7
Q ss_pred CCCEEEE--ECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCCHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECC
Q ss_conf 5942899--9789868976031466665531110134278874-241789888899998604301000100001231012
Q T0536 31 LSFALCI--VRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKS 107 (152)
Q Consensus 31 ~~~~i~i--~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (152)
++...++ .|.||+++++|+++++++|+++++++|+++.+++ |++.+.+......+...+.. ....++
T Consensus 3 ~d~~~fi~r~~~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~-------~~~e~~--- 72 (114)
T d1p97a_ 3 MDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQV-------VSGQYR--- 72 (114)
T ss_dssp CCCEEEEEEECTTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEE-------EEEEEE---
T ss_pred CCCCEEEEEECCCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCE-------EECCEE---
T ss_conf 6767799999799959999879997749971305520000000001243110010000111110-------001100---
Q ss_pred CCCCCCCCEEEEEEEEEEEEECC-CCCEEEEEEEEEEHHHHHH
Q ss_conf 23212565268888899787879-9978999889981479986
Q T0536 108 SRPVSGEEEQMYQNLEVIPIHSE-DGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Pi~d~-~g~v~gv~~~~~DITe~~~ 149 (152)
....+|..+|+.++..|++|+ +|++.+++++.+||||+|+
T Consensus 73 --~~~kdG~~~wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 73 --MLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp --EECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred --EEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf --00004765179999889996899989999999998972423
No 7
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.43 E-value=4.9e-13 Score=95.71 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=76.9
Q ss_pred CEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCCC
Q ss_conf 4289997898689760314666655311101342788742417-898888999986043010001000012310122321
Q T0536 33 FALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPV 111 (152)
Q Consensus 33 ~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (152)
+||+++|.+|+|++||+++++++||++++++|+++..++|... ..........+........... .. ....
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e-----~~~~ 72 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIG---RI-----VTGK 72 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTC---EE-----EEEE
T ss_pred CEEEEECCCCCEEEECHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC---CE-----EEEE
T ss_conf 989999799939977389998764341866189742242212100011222344430232111111---00-----0133
Q ss_pred CCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 256526888889978787999789998899814799
Q T0536 112 SGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 112 ~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
..++..+|+++++.|+.+.++ .+++++++||||-
T Consensus 73 ~~dg~~~~v~~~~~~~~~~~~--~~~~~~~~DITE~ 106 (106)
T d1xj3a1 73 RRDGTTFPMHLSIGEMQSGGE--PYFTGFVRDLTEH 106 (106)
T ss_dssp CTTSCEEEEEEEEEEEEETTE--EEEEEEEEECHHH
T ss_pred ECCCEEEEEEEEEEEEEECCE--EEEEEEEEECCCC
T ss_conf 014369988899999997993--7999999968898
No 8
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.31 E-value=9.7e-13 Score=93.90 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=77.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CCC-HHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 999999986159428999789868976031466665531110134278874-241-789888899998604301000100
Q T0536 21 RLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PES-ADYLKRKIDTALVIESSSFSSWEQ 98 (152)
Q Consensus 21 ~~~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (152)
...+.+++|++|+|++++|.+|+|++||+++++++|+++++++|++++++| |+. .+.+...+..++..+.... .
T Consensus 16 ~~~~d~~ld~~p~gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~----~ 91 (125)
T d1nwza_ 16 AKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNT----M 91 (125)
T ss_dssp TTCCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEE----E
T ss_pred HHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHEEEECEEEEECCCCCE----E
T ss_conf 999999985787529999089989998179997624562766399777726956661002000000210477545----8
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 0012310122321256526888889978787999789998899814
Q T0536 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
..+ ..+.++..++++++..|..+ |. .+..+++||
T Consensus 92 ~~~--------~~~~~G~~~~v~v~l~~~~~--g~--~~~v~V~di 125 (125)
T d1nwza_ 92 FEY--------TFDYQMTPTKVKVHMKKALS--GD--SYWVFVKRV 125 (125)
T ss_dssp EEE--------EECTTSCCEEEEEEEEECSS--SS--EEEEEEEEC
T ss_pred EEE--------EECCCCCEEEEEEEEEEECC--CC--EEEEEEEEC
T ss_conf 888--------74037947999999999469--99--899999989
No 9
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} SCOP: d1ot6a_ d1f98a_ d1f9ia_ d2d01a1 d1koua_ d1ugua_ d1gsva_ d1gswa_ d1gsxa_ d1odva_ d1otda_ d1mzub_ d1mzua_
Probab=99.27 E-value=1.7e-12 Score=92.44 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=75.2
Q ss_pred HHHHHHHHHH-HHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHH-HHHCCC-HHHHHHHHHHHHHCCCH
Q ss_conf 9999999999-99986159428999789868976031466665531110134278-874241-78988889999860430
Q T0536 15 NAMAKSRLLL-SELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPES-ADYLKRKIDTALVIESS 91 (152)
Q Consensus 15 ~~l~~s~~~l-~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~-~~~p~~-~~~~~~~~~~~~~~~~~ 91 (152)
+++++.-+.| .+++|++|+||+.+|.+|+|++||+++++++|+++++++|++++ +++|+. .+.+...+..+...+..
T Consensus 9 ~~~~~~l~~l~~~~ld~~p~gii~lD~dGri~~~N~a~~~l~G~~~ee~iGk~~~~~~~P~~~~~~~~~~~~~~~~~G~~ 88 (125)
T d1nwza_ 9 EDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNL 88 (125)
T ss_dssp TTHHHHTTTCCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 88999999999999862781268787998689875589986425825760664124118733568999999999972982
Q ss_pred HEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 10001000012310122321256526888889978787999789998899814
Q T0536 92 SFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDV 144 (152)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DI 144 (152)
... +.+. ...++..+++.++..| +.+|. ++.+++.+|
T Consensus 89 ~~~--------~e~~----~~~~g~~~~V~v~l~~--~~dg~--~~~v~v~~~ 125 (125)
T d1nwza_ 89 NTM--------FEYT----FDYQMTPTKVKVHMKK--ALSGD--SYWVFVKRV 125 (125)
T ss_dssp EEE--------EEEE----ECTTSCCEEEEEEEEE--CSSSS--EEEEEEEEC
T ss_pred EEE--------EEEE----ECCCCCEEEEEEEEEE--CCCCC--EEEEEEEEC
T ss_conf 146--------8788----7369923789999997--38998--479997739
No 10
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.15 E-value=1.5e-11 Score=86.81 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHH-CC-CHHHHHHHHHHHHHCCCHHEEECCCCE
Q ss_conf 9999986159428999789868976031466665531110134278874-24-178988889999860430100010000
Q T0536 23 LLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELF-PE-SADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
Q Consensus 23 ~l~~i~~~~~~~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (152)
.+.+++|++|+||+++|.+|+|++||+++++++|+++++++|+++++++ |+ ..+.+...+......+.....
T Consensus 4 ~~~A~ld~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~------ 77 (110)
T d1mzua_ 4 MGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDAR------ 77 (110)
T ss_dssp --CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEE------
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC------
T ss_conf 77999847893799996999999857789998867999985997899649864668999999999865565741------
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEEECC
Q ss_conf 123101223212565268888899787879
Q T0536 101 HLLPFKSSRPVSGEEEQMYQNLEVIPIHSE 130 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~ 130 (152)
+.+ ..+.++..+.+.++..+..+.
T Consensus 78 --~~~----~l~~~G~~~~v~v~~~~~~~~ 101 (110)
T d1mzua_ 78 --FDF----VFDFQMAPVRVQIRMQNAGVP 101 (110)
T ss_dssp --EEE----EEECSSCEEEEEEEEEECSST
T ss_pred --EEE----EEECCCCEEEEEEEEEEECCC
T ss_conf --379----993079638999999993479
No 11
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.01 E-value=1.6e-10 Score=80.54 Aligned_cols=109 Identities=11% Similarity=0.128 Sum_probs=75.6
Q ss_pred HHHHCCCEEEEECC-CCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH-HHHHHHHHHHHHCCCHHEEECCCCEEEEE
Q ss_conf 98615942899978-98689760314666655311101342788742417-89888899998604301000100001231
Q T0536 27 LLDQLSFALCIVRN-DYVIVKVNEYFESRVIFDGETMQGKNILELFPESA-DYLKRKIDTALVIESSSFSSWEQKPHLLP 104 (152)
Q Consensus 27 i~~~~~~~i~i~D~-d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (152)
+-+.+..+|+++|. +|+|+++|+++++++||++++++|+++.+++|... ......++..+..+.... ...
T Consensus 3 ~~~~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 74 (114)
T d1ll8a_ 3 MDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAA--------VVF 74 (114)
T ss_dssp SSTTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSS--------CCC
T ss_pred CCHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC--------CEE
T ss_conf 501009689999999999999778999754689789839972214281049999999999985677731--------003
Q ss_pred ECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHH
Q ss_conf 01223212565268888899787879997899988998147
Q T0536 105 FKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVT 145 (152)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DIT 145 (152)
.......+.+|..+++.+++.++..++ +. .++++++||+
T Consensus 75 ~~e~~~~~~~G~~~pvevs~~~i~~~~-~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 75 GTVVDIISRSGEKIPVSVWMKRMRQER-RL-CCVVVLEPVE 113 (114)
T ss_dssp SSSEEECCTTCCCEEEECCEECCBSSS-SB-EEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEECC-EE-EEEEEEEECC
T ss_conf 678888804991999999999999999-67-9999999775
No 12
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.52 E-value=1.7e-07 Score=62.46 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=68.7
Q ss_pred EEEEECCCCCEEEEECCHHHHHHHHH-HHHCCCCHHHHH-CCCHH--HHHHHHHHHHHCCCHHEEECCCCEEEEEECCCC
Q ss_conf 28999789868976031466665531-110134278874-24178--988889999860430100010000123101223
Q T0536 34 ALCIVRNDYVIVKVNEYFESRVIFDG-ETMQGKNILELF-PESAD--YLKRKIDTALVIESSSFSSWEQKPHLLPFKSSR 109 (152)
Q Consensus 34 ~i~i~D~d~~i~~~N~~~~~~~g~~~-~~i~G~~~~~~~-p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (152)
-+.-.|.+|+++++|+++..++|+.+ ++++|+++++++ |++.+ ......+.+...+.... . .+|
T Consensus 4 F~trh~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~-------~-----~yR 71 (109)
T d1oj5a_ 4 FMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASS-------P-----SYR 71 (109)
T ss_dssp EEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEEC-------C-----CEE
T ss_pred EEEEECCCCEEEEECHHHHHHHHCCCHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCCCH-------H-----HHH
T ss_conf 8999879962999987896675337878985975988498013327776678998873022230-------5-----564
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 212565268888899787879997899988998
Q T0536 110 PVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVY 142 (152)
Q Consensus 110 ~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~ 142 (152)
-...+|.++|+..+..+++|+.|....+++..+
T Consensus 72 ~~~kdG~~vWv~t~~~~~~~~~~~~~~~Ii~~h 104 (109)
T d1oj5a_ 72 FILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIH 104 (109)
T ss_dssp EECTTSCEEEEEEEEEEECC----CCCEEEEEE
T ss_pred HHHCCCCEEEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf 402368389999999999999999635899999
No 13
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=96.63 E-value=0.0014 Score=38.99 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=36.8
Q ss_pred EEEEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHC-CCHHHHH
Q ss_conf 289997-898689760314666655311101342788742-4178988
Q T0536 34 ALCIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFP-ESADYLK 79 (152)
Q Consensus 34 ~i~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p-~~~~~~~ 79 (152)
.++++| .+|+|+++......++|+++++++|+++.++++ +....+.
T Consensus 19 ~Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~~~i~ 66 (114)
T d2oola2 19 YLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLT 66 (114)
T ss_dssp EEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHH
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 899998899989999488899848892887599889968998999999
No 14
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]} SCOP: d1ojga_
Probab=95.58 E-value=0.069 Score=28.73 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 9999999999861594-289997898689760314666655311101342788742417898888999986043010001
Q T0536 18 AKSRLLLSELLDQLSF-ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSW 96 (152)
Q Consensus 18 ~~s~~~l~~i~~~~~~-~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 96 (152)
..-+.+++.+.+.... -|+++|++|+++.-+... .+|.++.+ .++ ++..+.++... +
T Consensus 35 ~~l~~~l~~~~~~~~~~~i~i~d~~G~via~s~~~----------~iG~~~~~-----~~~----~~~a~~g~~~~--~- 92 (131)
T d1p0za_ 35 ARIKALIDPMRSFSDATYITVGDASGQRLYHVNPD----------EIGKSMEG-----GDS----DEALINAKSYV--S- 92 (131)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEETTSBEEECSSGG----------GTTSBCCS-----SCC----HHHHHHCCCEE--E-
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCC----------CCCCCCCC-----CCH----HHHHHCCCCEE--E-
T ss_conf 68889999999713964899983897589964600----------15887666-----501----56662167458--9-
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 000012310122321256526888889978787999789998899814799
Q T0536 97 EQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
+. .+.+...+ ....|++|++|++.|++.+..++.+.
T Consensus 93 --------~~-----~gt~~~~~--~~~~PV~~~~G~iiGvV~v~~~l~~i 128 (131)
T d1p0za_ 93 --------VR-----KGSLGSSL--RGKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp --------EE-----EETTEEEE--EEEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred --------EE-----ECCCCCEE--EEEEEEECCCCCEEEEEEEEEEECCC
T ss_conf --------98-----43775357--89977784999699999987661121
No 15
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=94.60 E-value=0.028 Score=31.06 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCEE-EEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 9428-9997-898689760314666655311101342788742417
Q T0536 32 SFAL-CIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFPESA 75 (152)
Q Consensus 32 ~~~i-~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~ 75 (152)
|.|+ +++| .+++|+.++.-...++|+++++++|+++.++|++..
T Consensus 34 phG~LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~~~ 79 (127)
T d2o9ca2 34 PHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQW 79 (127)
T ss_dssp TTSEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTTH
T ss_pred CCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHHH
T ss_conf 8848999988999799987898998387968984999899888889
No 16
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=91.91 E-value=0.044 Score=29.89 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=36.0
Q ss_pred CCEE-EEEC-CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9428-9997-89868976031466665531110134278874241
Q T0536 32 SFAL-CIVR-NDYVIVKVNEYFESRVIFDGETMQGKNILELFPES 74 (152)
Q Consensus 32 ~~~i-~i~D-~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~ 74 (152)
|.|+ +++| .+++|+.+..-...++|.++++++|+++.++|+..
T Consensus 25 phG~LLald~~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~ 69 (127)
T d2veaa3 25 PHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 69 (127)
T ss_dssp TTSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC
T ss_pred CCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCHH
T ss_conf 886899998899989998579898848596998399988987989
No 17
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=89.51 E-value=0.65 Score=22.91 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCC-EEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 999999999861594-2899978986897603146666553111013427887424178988889999860430100010
Q T0536 19 KSRLLLSELLDQLSF-ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWE 97 (152)
Q Consensus 19 ~s~~~l~~i~~~~~~-~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (152)
.-+.++.++.+.... -|+++|.+|.+..-... . .+|+++.+ +.. .+.+... .+. .+.
T Consensus 36 ~l~~~~~~l~~~~~~~~i~v~D~~G~v~a~~~~--~--------~iG~~~~~--~~~-------~~a~~~g-~~~-~~~- 93 (131)
T d1p0za_ 36 RIKALIDPMRSFSDATYITVGDASGQRLYHVNP--D--------EIGKSMEG--GDS-------DEALINA-KSY-VSV- 93 (131)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEETTSBEEECSSG--G--------GTTSBCCS--SCC-------HHHHHHC-CCE-EEE-
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCEEECCCH--H--------HCCCCCCC--CCH-------HHHHHCC-CCE-EEE-
T ss_conf 999999999997298289999799878982684--5--------45876555--412-------7899718-868-999-
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 00012310122321256526888889978787999789998899814799
Q T0536 98 QKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
..+.+...+ ....|+++.+|++.|++.+..++.+.
T Consensus 94 -------------~~g~~g~~~--~~~~PI~~~~G~viGvV~Vg~~l~~i 128 (131)
T d1p0za_ 94 -------------RKGSLGSSL--RGKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp -------------EEETTEEEE--EEEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred -------------EECCCCCEE--EEEEEEECCCCCEEEEEEEEEEHHHH
T ss_conf -------------961786189--99998897899699999999886883
No 18
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=85.44 E-value=1.1 Score=21.45 Aligned_cols=113 Identities=11% Similarity=0.124 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHCCCE--EEEECCCCCEEE-EECCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHE
Q ss_conf 999999999998615942--899978986897-60314666655311101342788742417898888999986043010
Q T0536 17 MAKSRLLLSELLDQLSFA--LCIVRNDYVIVK-VNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSF 93 (152)
Q Consensus 17 l~~s~~~l~~i~~~~~~~--i~i~D~d~~i~~-~N~~~~~~~g~~~~~i~G~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (152)
+..-+..|..++.+.|.- |.++|.+|+++. +++......-.+....... ..++|+. .........+
T Consensus 53 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~yf~----~a~~~~~~~~ 121 (172)
T d2p7ja2 53 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSLILRDK-------SAREYFK----YAQSLDNEQI 121 (172)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECTTSBEEEEEEEETTTTEEEECCCCCBC-------TTSHHHH----HHHTSCTTCC
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC-------HHHHHHH----HHHHCCCCEE
T ss_conf 8999999999864003340699999999999998457887522675211462-------0009999----9984899809
Q ss_pred EECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHH
Q ss_conf 001000012310122321256526888889978787999789998899814799
Q T0536 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQ 147 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~gv~~~~~DITe~ 147 (152)
.... +...+ ........+..+. ....|+++ +|++.||+++-.|.+-.
T Consensus 122 ~~s~--~~~~~--~~g~~~~~~~p~i--~~a~Pv~~-~g~~~Gvlvi~i~l~~l 168 (172)
T d2p7ja2 122 SAWG--IELER--DKGELVYPLSPSL--RILMPISV-NDVRQGYLVLNVDIEYL 168 (172)
T ss_dssp EEEE--EEECE--ETTEECSSCCEEE--EEEEEEEE-TTEEEEEEEEEEEHHHH
T ss_pred EEEC--CCCCC--CCCCCEECCCEEE--EEEEEECC-CCEEEEEEEEEECHHHH
T ss_conf 9944--50244--4432012177089--99998757-99899999999869999
No 19
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=82.07 E-value=0.95 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=32.2
Q ss_pred EEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 2899978986897603146666553111013427887424
Q T0536 34 ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE 73 (152)
Q Consensus 34 ~i~i~D~d~~i~~~N~~~~~~~g~~~~~i~G~~~~~~~p~ 73 (152)
.++++|++++|+.+..-...++|++++ .+|+.+.+++..
T Consensus 24 ~LLald~~~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~~ 62 (113)
T d3c2wa3 24 ALVTLRADGMVLAASENIQALLGFVAS-PGSYLTQEQVGP 62 (113)
T ss_dssp EEEEECTTSBEEEEETTHHHHTSSCCC-TTCBCCHHHHHH
T ss_pred EEEEECCCCEEEEECCCHHHHHCCCHH-HHCCCHHHHHCH
T ss_conf 999986997099981798988398856-745427877587
No 20
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=75.65 E-value=2.5 Score=19.40 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=23.5
Q ss_pred EEEEEEECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 8997878799978999889981479986
Q T0536 122 LEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
Q Consensus 122 ~~~~Pi~d~~g~v~gv~~~~~DITe~~~ 149 (152)
..+.|+++.+|++.|++++..++++...
T Consensus 102 ~~~~Pv~~~~G~viGvV~Vg~~~~~ie~ 129 (133)
T d3by8a1 102 RVFTPIYDENHKQIGVVAIGLELSRVTQ 129 (133)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEHHHHHH
T ss_conf 9997329789929999999988899898
No 21
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=46.94 E-value=7.2 Score=16.63 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=8.1
Q ss_pred CCEEEEECCCC-CEEEEECC
Q ss_conf 94289997898-68976031
Q T0536 32 SFALCIVRNDY-VIVKVNEY 50 (152)
Q Consensus 32 ~~~i~i~D~d~-~i~~~N~~ 50 (152)
|+||.++|.+| .|.+.|+.
T Consensus 62 PDGiaLt~~~Gs~i~ffsR~ 81 (100)
T d1smpi_ 62 PDGLTLTQADGSAVAFFSRN 81 (100)
T ss_dssp SSEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEEEC
T ss_conf 98377755889868766305
Done!