Query T0537 ZP_02066290.1, Bacteroides ovatus, 381 residues
Match_columns 381
No_of_seqs 211 out of 469
Neff 7.2
Searched_HMMs 22458
Date Fri May 21 18:05:49 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0537.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0537.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vji_A Tailspike protein; vira 62.8 4.5 0.0002 17.3 3.0 14 147-160 208-221 (600)
2 1pcl_A Pectate lyase E; lyase 52.7 8.3 0.00037 15.8 8.6 36 65-103 25-62 (355)
3 1pe9_A Pectate lyase A; parall 50.2 9.1 0.00041 15.6 4.4 41 58-101 26-67 (361)
4 3b4n_A Endo-pectate lyase; pec 45.2 11 0.00049 15.1 3.9 38 115-153 126-166 (344)
5 2v5i_A Salmonella typhimurium 41.2 13 0.00056 14.8 6.6 34 122-156 319-354 (559)
6 2o04_A Pectate lyase, PL; hexa 39.0 14 0.00061 14.6 4.3 53 55-107 20-72 (399)
7 2odx_A Cytochrome C oxidase po 36.3 4.9 0.00022 17.1 -0.4 42 55-96 10-54 (80)
8 1v54_F VI, cytochrome C oxidas 27.1 13 0.00058 14.7 0.6 23 58-80 37-59 (98)
9 2qy1_A Pectate lyase II; GAG l 22.0 27 0.0012 12.8 10.4 93 63-160 13-106 (330)
10 1qcx_A Pectin lyase B; beta-he 18.3 33 0.0015 12.4 6.7 35 65-102 20-54 (359)
No 1
>2vji_A Tailspike protein; viral protein, viral adhesion protein, endo-N- acetylglucosaminidase, right-handed parallel beta-helix, hydrolase; 1.38A {Bacteriophage HK620} PDB: 2vjj_A*
Probab=62.76 E-value=4.5 Score=17.34 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=7.0
Q ss_pred EEEEEEEEEEEEEE
Q ss_conf 69995886107983
Q T0537 147 DCRNVGFVNASVSS 160 (381)
Q Consensus 147 ~ikNl~i~n~~i~g 160 (381)
..+|+.|+++.+..
T Consensus 208 ~ckNV~I~nc~fIN 221 (600)
T 2vji_A 208 YGSNCYVRKCRFIN 221 (600)
T ss_dssp BEESCEEESCEEEC
T ss_pred CCCCEEEEEEEEEC
T ss_conf 67865997448974
No 2
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1
Probab=52.68 E-value=8.3 Score=15.83 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=24.8
Q ss_pred CCCEEECCHHHHHHHHHHHHC-C-CCEEEEECCCCCCCCCC
Q ss_conf 888687487999999876632-7-84699960562346777
Q T0537 65 SKPYMIMNATQIRNMRSVLKS-G-MKVYFQLGADIDMAGID 103 (381)
Q Consensus 65 ~~PY~I~t~~~L~~l~~~~~~-~-~~~~f~L~~DIdlsg~~ 103 (381)
...|.+++..||+. ++.. + .-+.|++..-|||....
T Consensus 25 g~v~~Vttl~dL~~---al~~~~~~~~Vi~v~G~I~~~~~~ 62 (355)
T 1pcl_A 25 AKAVEVKNISDFKK---ALNGTDSSAKIIKVTGPIDISGGK 62 (355)
T ss_pred CEEEEECCHHHHHH---HHHCCCCCEEEEEEEEEEECCCCC
T ss_conf 53998189999999---975669941899980799678763
No 3
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A
Probab=50.17 E-value=9.1 Score=15.60 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=29.2
Q ss_pred CCCCCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEECCCCCCCC
Q ss_conf 1557887888687487999999876632-7846999605623467
Q T0537 58 EKGNGTDSKPYMIMNATQIRNMRSVLKS-GMKVYFQLGADIDMAG 101 (381)
Q Consensus 58 ~~G~GT~~~PY~I~t~~~L~~l~~~~~~-~~~~~f~L~~DIdlsg 101 (381)
-++.|+...+|.+++.+||+. ++.. ..-+.+++..-|||..
T Consensus 26 GG~gg~~g~v~~Vt~l~dL~~---al~~~~~~~Vi~v~G~I~~~~ 67 (361)
T 1pe9_A 26 GGAAATSDNIYIVTNISEFTS---ALSAGAEAKIIQIKGTIDISG 67 (361)
T ss_dssp TTTTCCGGGEEEECSHHHHHH---HHTTTTSCEEEEECSEEETTT
T ss_pred CCCCCCCCEEEEECCHHHHHH---HHHCCCCCEEEEEEEEEECCC
T ss_conf 788884764999599999999---985799828999846997888
No 4
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A
Probab=45.23 E-value=11 Score=15.14 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=25.1
Q ss_pred CEEE-EECCCCEEEEEEEEC--CCCCCEEEEEECCEEEEEEE
Q ss_conf 7778-840798389702747--87753045887156999588
Q T0537 115 PYEI-DFDGDSHVIKNFKCS--AGDYPSFFGVLCGDCRNVGF 153 (381)
Q Consensus 115 ~F~G-tFDGnGhtIsnL~i~--~~~~~GLFG~i~g~ikNl~i 153 (381)
+..+ +|||.+.++ ++... ++.-.-+|-.-++++||+.|
T Consensus 126 ~v~~~t~dgg~kt~-~~~~~gq~e~q~~vf~legatlkNvii 166 (344)
T 3b4n_A 126 TFENRTVDCGGVTI-GTSCPNDSDKQKPLIILKNATVKNLRI 166 (344)
T ss_dssp EEESSEEECTTCEE-CCCCCTTCSCCCCSEEEESCEEEEEEE
T ss_pred EECCCEEECCCEEE-ECCCCCCCCCCCEEEEECCCEEEEEEE
T ss_conf 00265042688288-024678777787079984865887898
No 5
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage}
Probab=41.15 E-value=13 Score=14.77 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=15.4
Q ss_pred CCCEEEEEEEECCCCCCEEEEEE--CCEEEEEEEEEE
Q ss_conf 79838970274787753045887--156999588610
Q T0537 122 GDSHVIKNFKCSAGDYPSFFGVL--CGDCRNVGFVNA 156 (381)
Q Consensus 122 GnGhtIsnL~i~~~~~~GLFG~i--~g~ikNl~i~n~ 156 (381)
=++|.|.||-...+--+|| |.- ++.+.|+++++.
T Consensus 319 P~NHliDnllv~~sLGVGl-GMDG~G~YVSNitvqDC 354 (559)
T 2v5i_A 319 PNNHLVDNILVMNSLGVGL-GMDGSGGYVSNVTVQDC 354 (559)
T ss_dssp CCCCEEEEEEEESCSSEEE-EEEEESCEEEEEEEESC
T ss_pred CCHHHHHHHEEECCCCEEE-EECCCCCEEEEEEEHHC
T ss_conf 6102233321223420244-02377744741372225
No 6
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*
Probab=39.02 E-value=14 Score=14.57 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=34.0
Q ss_pred CEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 40015578878886874879999998766327846999605623467776304
Q T0537 55 GLFEKGNGTDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADIDMAGIDDWQS 107 (381)
Q Consensus 55 ~lf~~G~GT~~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DIdlsg~~~W~p 107 (381)
+.=.++.++++++|.++|.+||+..-.......-+...+...||+.+.....+
T Consensus 20 gtTGG~~a~~~~v~tv~t~~el~~aL~~~~~~~p~iI~v~gtid~~~~~~~~~ 72 (399)
T 2o04_A 20 GTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKP 72 (399)
T ss_dssp CCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCB
T ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCC
T ss_conf 97768876777368728999999998851699766999905780256766412
No 7
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=36.29 E-value=4.9 Score=17.15 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=26.2
Q ss_pred CEECCCCCCCCCCEEECCHHHHHHHHHH---HHCCCCEEEEECCC
Q ss_conf 4001557887888687487999999876---63278469996056
Q T0537 55 GLFEKGNGTDSKPYMIMNATQIRNMRSV---LKSGMKVYFQLGAD 96 (381)
Q Consensus 55 ~lf~~G~GT~~~PY~I~t~~~L~~l~~~---~~~~~~~~f~L~~D 96 (381)
-|.+...||+++|.+|.+..+-+.+.=. ..+..-.+|.|..+
T Consensus 10 pl~~s~~GT~e~P~lVpS~~~~RiVGC~g~~~dsh~v~W~~l~~g 54 (80)
T 2odx_A 10 PLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAGSHTIMWLKPTVN 54 (80)
T ss_dssp ---------CCSCSEECCSSSSCCEEESSSTTCCSCCEEECCCTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCEEEEEEECCC
T ss_conf 554588986549958026899769867156788636689996279
No 8
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F*
Probab=27.14 E-value=13 Score=14.69 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=17.0
Q ss_pred CCCCCCCCCCEEECCHHHHHHHH
Q ss_conf 15578878886874879999998
Q T0537 58 EKGNGTDSKPYMIMNATQIRNMR 80 (381)
Q Consensus 58 ~~G~GT~~~PY~I~t~~~L~~l~ 80 (381)
..+.||+++|.+|.+..+-+.+.
T Consensus 37 ~~~~GTke~P~lVpS~~~~RiVG 59 (98)
T 1v54_F 37 KATSGTKEDPNLVPSITNKRIVG 59 (98)
T ss_dssp CCCCCCSSSCEEEECSSSEEEEE
T ss_pred CCCCCCCCCCCEECCCCCCEEEE
T ss_conf 58998766986805779864885
No 9
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A
Probab=22.02 E-value=27 Score=12.84 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCEEEEEEEECCCCCCEEE
Q ss_conf 8788868748799999987663278469996056234677763046888887777884-079838970274787753045
Q T0537 63 TDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADIDMAGIDDWQSLNGSGDFPYEIDF-DGDSHVIKNFKCSAGDYPSFF 141 (381)
Q Consensus 63 T~~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DIdlsg~~~W~pi~g~~~~~F~GtF-DGnGhtIsnL~i~~~~~~GLF 141 (381)
.-..||.+++..||+...++.....-+.|++..-|++.....-.+... ..+....+ .+.+-||.+...+.. -.|++
T Consensus 13 ~gg~vv~Vttl~dl~~al~~~~~~~~~vi~v~G~I~~~~~~~~~~~~~--~~~~~~~i~~~sn~TI~G~~~~~~-~~g~~ 89 (330)
T 2qy1_A 13 GNKVPVNVATFEAMQSAIDSYSGSGGLVLNYTGKFDFGTIKDVCAQWK--LPAKTVQIKNKSDVTIKGANGSAA-NFGIR 89 (330)
T ss_dssp TTSCCEEECSHHHHHHHHHHSCSSSCEEEEECCBCCGGGCCCGGGSTT--SCCCEEEEESCCSEEEEECTTCBB-SSEEE
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCCCEEEEECCEEECCCCCCCCCCCC--CCCCCEEEECCCCCEEECCCCCEE-EEEEE
T ss_conf 996499938999999988535799877999799996065433355543--235504885388637806877555-10379
Q ss_pred EEECCEEEEEEEEEEEEEE
Q ss_conf 8871569995886107983
Q T0537 142 GVLCGDCRNVGFVNASVSS 160 (381)
Q Consensus 142 G~i~g~ikNl~i~n~~i~g 160 (381)
+....+|+.|++..|..
T Consensus 90 --~~~~~~NVIiRnL~~r~ 106 (330)
T 2qy1_A 90 --VVGNAHNVIIQNMTIGL 106 (330)
T ss_dssp --EESSCEEEEEESCEEES
T ss_pred --EEECCCCEEEECCEECC
T ss_conf --88535318986854315
No 10
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2
Probab=18.28 E-value=33 Score=12.36 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 88868748799999987663278469996056234677
Q T0537 65 SKPYMIMNATQIRNMRSVLKSGMKVYFQLGADIDMAGI 102 (381)
Q Consensus 65 ~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DIdlsg~ 102 (381)
..||.+++.+||+ +++.+..-...++...||+.+.
T Consensus 20 g~v~~Vt~~~eL~---~al~~~~PriI~i~gtid~~~~ 54 (359)
T 1qcx_A 20 ASPVYPTTTDELV---SYLGDNEPRVIILDQTFDFTGT 54 (359)
T ss_dssp CCCBCCCSHHHHH---HHHHSSSCEEEEECSEEECTTT
T ss_pred CEEEEECCHHHHH---HHHCCCCCEEEEECCEEECCCC
T ss_conf 7289809999999---9865999749998888830345
Done!