Query T0537 ZP_02066290.1, Bacteroides ovatus, 381 residues
Match_columns 381
No_of_seqs 211 out of 469
Neff 7.2
Searched_HMMs 15564
Date Fri May 21 18:08:21 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0537.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0537.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tywa_ b.80.1.6 (A:) P22 tail 31.5 13 0.00081 13.9 6.1 34 122-156 311-346 (554)
2 d1v54f_ g.41.5.3 (F:) Cytochro 27.2 9 0.00058 14.7 0.6 23 57-79 36-58 (98)
3 d1pe9a_ b.80.1.1 (A:) Pectate 19.5 22 0.0014 12.5 7.1 40 60-102 28-68 (361)
4 d1bhea_ b.80.1.3 (A:) Polygala 17.7 24 0.0015 12.3 1.9 10 118-127 117-126 (376)
5 d1ou8a_ b.136.1.1 (A:) Stringe 13.0 32 0.0021 11.5 2.4 30 63-97 2-31 (106)
6 d1idpa_ d.17.4.1 (A:) Scytalon 10.6 31 0.002 11.6 0.1 17 364-381 131-147 (147)
7 d2j7ja3 g.37.1.1 (A:58-85) Tra 8.2 44 0.0028 10.8 0.1 11 6-16 13-23 (28)
8 d1pcla_ b.80.1.1 (A:) Pectate 6.2 60 0.0039 10.0 10.2 38 60-102 22-61 (355)
9 d1yfna1 b.136.1.1 (A:4-111) St 6.0 63 0.004 9.9 2.4 32 63-99 4-35 (108)
10 d1vdda_ e.49.1.1 (A:) Recombin 6.0 64 0.0041 9.8 3.7 68 20-99 45-113 (199)
No 1
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]}
Probab=31.51 E-value=13 Score=13.86 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=15.0
Q ss_pred CCCEEEEEEEECCCCCCEEEEEE--CCEEEEEEEEEE
Q ss_conf 79838970274787753045887--156999588610
Q T0537 122 GDSHVIKNFKCSAGDYPSFFGVL--CGDCRNVGFVNA 156 (381)
Q Consensus 122 GnGhtIsnL~i~~~~~~GLFG~i--~g~ikNl~i~n~ 156 (381)
=++|.|.||-+..+--+|| |.- ++.+.|+++++.
T Consensus 311 p~nhlidn~lv~~slgvgl-gmdg~g~yvsnitv~dc 346 (554)
T d1tywa_ 311 PLNHLIDNLLVRGALGVGF-GMDGKGMYVSNITVEDC 346 (554)
T ss_dssp CCCCEEEEEEEECCSSCSE-EEEEESCEEEEEEEESC
T ss_pred CHHHHHHHHEEECCCCEEE-EECCCCCEEEEEEEECC
T ss_conf 5023233310113532012-01377734730074015
No 2
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.19 E-value=9 Score=14.70 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.3
Q ss_pred ECCCCCCCCCCEEECCHHHHHHH
Q ss_conf 01557887888687487999999
Q T0537 57 FEKGNGTDSKPYMIMNATQIRNM 79 (381)
Q Consensus 57 f~~G~GT~~~PY~I~t~~~L~~l 79 (381)
+..+.||+++|.+|.+..+-+.+
T Consensus 36 ~~~~~GTke~P~lVpS~~~~RiV 58 (98)
T d1v54f_ 36 PKATSGTKEDPNLVPSITNKRIV 58 (98)
T ss_dssp CCCCCCCSSSCEEEECSSSEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCEEE
T ss_conf 75899877698680477986488
No 3
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}
Probab=19.53 E-value=22 Score=12.53 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=28.1
Q ss_pred CCCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC
Q ss_conf 57887888687487999999876632-78469996056234677
Q T0537 60 GNGTDSKPYMIMNATQIRNMRSVLKS-GMKVYFQLGADIDMAGI 102 (381)
Q Consensus 60 G~GT~~~PY~I~t~~~L~~l~~~~~~-~~~~~f~L~~DIdlsg~ 102 (381)
..|....||.+++..||+ +++.. ..-+.+++.--|++++.
T Consensus 28 ~gg~~g~v~~Vt~l~dL~---~al~~~~~p~iI~v~G~I~~~~~ 68 (361)
T d1pe9a_ 28 AAATSDNIYIVTNISEFT---SALSAGAEAKIIQIKGTIDISGG 68 (361)
T ss_dssp TTCCGGGEEEECSHHHHH---HHHTTTTSCEEEEECSEEETTTT
T ss_pred CCCCCCEEEEECCHHHHH---HHHHCCCCEEEEEEEEEEECCCC
T ss_conf 888487799969999999---98747997089998549978887
No 4
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}
Probab=17.71 E-value=24 Score=12.28 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=6.8
Q ss_pred EEECCCCEEE
Q ss_conf 8840798389
Q T0537 118 IDFDGDSHVI 127 (381)
Q Consensus 118 GtFDGnGhtI 127 (381)
|++||+|...
T Consensus 117 G~IDG~G~~~ 126 (376)
T d1bhea_ 117 GTIDGQGGVK 126 (376)
T ss_dssp SEEECCTTSC
T ss_pred CEEECCCCEE
T ss_conf 6881334416
No 5
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]} SCOP: d1ou9b_ d1ou9c_ d1oula_ d1ou9a_ d1twba_ d1oulb_ d1yfna1 d1yfnb1
Probab=12.96 E-value=32 Score=11.54 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=16.7
Q ss_pred CCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 87888687487999999876632784699960562
Q T0537 63 TDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADI 97 (381)
Q Consensus 63 T~~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DI 97 (381)
|...||+|+-..| |+. .++..-|-...+..
T Consensus 2 t~~~pylira~~~--Wi~---Dn~~tPyi~Vda~~ 31 (106)
T d1ou8a_ 2 SPKRPYLLRAYYD--WLV---DNSFTPYLVVDATY 31 (106)
T ss_dssp CCSHHHHHHHHHH--HHH---HTTCCEEEEEETTS
T ss_pred CCCCCHHHHHHHH--HHH---HCCCCCEEEEEECC
T ss_conf 8886346777889--986---08999779998049
No 6
>d1idpa_ d.17.4.1 (A:) Scytalone dehydratase {Fungus (Magnaporthe grisea) [TaxId: 148305]} SCOP: d2stda_ d3stda_ d6stda_
Probab=10.55 E-value=31 Score=11.61 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCEEEECC
Q ss_conf 541213889835664439
Q T0537 364 PNLWKKGTNGYPIFQWSE 381 (381)
Q Consensus 364 ~~vW~~~~~~YP~l~W~~ 381 (381)
..+|++ ++..|-.||+|
T Consensus 131 dG~Wkf-agL~P~VrW~E 147 (147)
T d1idpa_ 131 DGVWKF-AGLKPDIRWGE 147 (147)
T ss_dssp TTEEEE-EEEEEEEEEEC
T ss_pred CCEEEE-EEECCEEEECC
T ss_conf 528998-64052355519
No 7
>d2j7ja3 g.37.1.1 (A:58-85) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=8.22 E-value=44 Score=10.75 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=6.6
Q ss_pred CCHHHHHHHHH
Q ss_conf 00255300122
Q T0537 6 IGRFGMLLMMA 16 (381)
Q Consensus 6 ~~~~~~~~~~~ 16 (381)
+||-|.+||.-
T Consensus 13 vgktwt~y~kh 23 (28)
T d2j7ja3 13 VGKTWTLYLKH 23 (28)
T ss_dssp EESSHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 12049999999
No 8
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}
Probab=6.24 E-value=60 Score=9.95 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCCCCCCEEECCHHHHHHHHHHHHC-C-CCEEEEECCCCCCCCC
Q ss_conf 57887888687487999999876632-7-8469996056234677
Q T0537 60 GNGTDSKPYMIMNATQIRNMRSVLKS-G-MKVYFQLGADIDMAGI 102 (381)
Q Consensus 60 G~GT~~~PY~I~t~~~L~~l~~~~~~-~-~~~~f~L~~DIdlsg~ 102 (381)
|.| ..-|.+++..||+. ++.. + .-..|++..-|||+..
T Consensus 22 G~g--g~v~~Vt~l~dL~~---al~~~~~~~~vi~v~G~I~~~~~ 61 (355)
T d1pcla_ 22 AKA--AKAVEVKNISDFKK---ALNGTDSSAKIIKVTGPIDISGG 61 (355)
T ss_pred CCC--CEEEEECCHHHHHH---HHHCCCCCEEEEEECEEEECCCC
T ss_conf 899--63999289999999---87376994299998739976776
No 9
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=6.05 E-value=63 Score=9.85 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=19.0
Q ss_pred CCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 8788868748799999987663278469996056234
Q T0537 63 TDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADIDM 99 (381)
Q Consensus 63 T~~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DIdl 99 (381)
|...||+|+-.++ |+- .++..-|..+.++.+-
T Consensus 4 ~s~rPYliRA~y~--W~~---Dn~~TPyl~Vda~~~~ 35 (108)
T d1yfna1 4 TPRRPYLLRAFYE--WLL---DNQLTPHLVVDVTLPG 35 (108)
T ss_dssp CCSHHHHHHHHHH--HHH---HTTCCEEEEEETTSTT
T ss_pred CCCCCHHHHHHHH--HHH---HCCCCCEEEEEECCCC
T ss_conf 6785473999999--998---7899877999948999
No 10
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.99 E-value=64 Score=9.82 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 057776877532465666556677765665565454-0015578878886874879999998766327846999605623
Q T0537 20 ISCSDPNPLDSYTRVPFEKTETDDGNGDGDGDGAGG-LFEKGNGTDSKPYMIMNATQIRNMRSVLKSGMKVYFQLGADID 98 (381)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-lf~~G~GT~~~PY~I~t~~~L~~l~~~~~~~~~~~f~L~~DId 98 (381)
.+..+..-.=+.|..|+++++.+.-+.+.+- .++. +. -++++..|+..+- ....+...||.|..-|.
T Consensus 45 ~~l~~~~~~I~~C~~C~~l~e~~~C~iC~d~-~Rd~~~i----------CVVE~~~Dl~~iE-~t~~y~G~YhVL~G~is 112 (199)
T d1vdda_ 45 SALLEAKRDLHVCPICFNITDAEKCDVCADP-SRDQRTI----------CVVEEPGDVIALE-RSGEYRGLYHVLHGVLS 112 (199)
T ss_dssp HHHHHHHHHCEECSSSCCEESSSSCHHHHCS-SSCTTEE----------EEESSHHHHHHTT-TTSSCCSEEEECSSCCB
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCEE----------EEEECHHHHHHHH-HCCCCHHHHHHHCCCCC
T ss_conf 9999999860989887704267774411476-7776469----------9996689989998-52310001554157558
Q ss_pred C
Q ss_conf 4
Q T0537 99 M 99 (381)
Q Consensus 99 l 99 (381)
.
T Consensus 113 p 113 (199)
T d1vdda_ 113 P 113 (199)
T ss_dssp G
T ss_pred C
T ss_conf 4
Done!