Query T0538 NsR143, , 54 residues
Match_columns 54
No_of_seqs 103 out of 193
Neff 4.4
Searched_HMMs 22458
Date Fri May 21 18:04:31 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0538.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0538.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kru_A Light-independent proto 99.9 5E-23 2.2E-27 147.5 5.4 52 2-53 3-54 (63)
2 3aek_B Light-independent proto 99.9 9.9E-24 4.4E-28 151.3 0.0 53 2-54 473-525 (525)
3 3bpq_B Uncharacterized protein 84.3 0.63 2.8E-05 25.9 3.2 36 1-36 1-36 (88)
4 1wmi_A RELE, hypothetical prot 76.1 0.75 3.3E-05 25.5 1.3 34 2-35 4-37 (90)
5 2khe_A Toxin RELE, toxin-like 72.1 2 9E-05 23.1 2.7 33 3-35 5-37 (89)
6 3kha_A Toxin RELE; toxin-antit 68.6 3 0.00013 22.2 3.0 33 2-34 4-36 (95)
7 3g5o_B Uncharacterized protein 67.5 2.4 0.00011 22.7 2.3 34 2-35 19-52 (102)
8 1id3_B Histone H4; nucleosome 34.5 29 0.0013 16.7 4.3 49 5-54 46-95 (102)
9 1u2m_A Histone-like protein HL 27.7 34 0.0015 16.4 2.8 22 19-40 97-118 (143)
10 1snn_A DHBP synthase, 3,4-dihy 18.4 50 0.0022 15.5 2.1 26 25-50 196-221 (227)
No 1
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=99.87 E-value=5e-23 Score=147.49 Aligned_cols=52 Identities=31% Similarity=0.667 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 8876888999986088012378999999999876998138898999998756
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~g~~~IT~ev~~~Ak~~fG 53 (54)
.|+||+||+++|++||||||+|||+|||+||+++|+++||+++|++||++||
T Consensus 3 el~Wt~EA~~~LkkIP~FVR~kvr~~~E~~Are~G~~~IT~evl~~AK~~~G 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHC
T ss_conf 7877999999988198877999999999999984999776999999999837
No 2
>3aek_B Light-independent protochlorophyllide reductase subunit B; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=99.86 E-value=9.9e-24 Score=151.33 Aligned_cols=53 Identities=32% Similarity=0.559 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 88768889999860880123789999999998769981388989999987569
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFGQ 54 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~g~~~IT~ev~~~Ak~~fG~ 54 (54)
++.|++||+++|+|||||||+|||||||+||+|+|+++||+|++|+||++|+|
T Consensus 473 ~~~w~~~a~~~l~k~p~fvr~k~~~~te~~a~~~g~~~it~~~~~~ak~~~~~ 525 (525)
T 3aek_B 473 EIRWMPEAERELRKIPFFVRGKAKRNTELYAAHKGVCDITVETLYEAKAHYAR 525 (525)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCC
T ss_conf 77778899998700996200276677899999759984539999998875568
No 3
>3bpq_B Uncharacterized protein MJ1103; protein toxin-antitoxin complex; 2.20A {Methanococcus jannaschii}
Probab=84.32 E-value=0.63 Score=25.90 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 988768889999860880123789999999998769
Q T0538 1 MNLRWTSEAKTKLKNIPFFARSQAKARIEQLARQAE 36 (54)
Q Consensus 1 l~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~g 36 (54)
|.+.|++.|+..|+++|..++.++...+|.++..-.
T Consensus 1 Mkv~~~~~a~k~L~kL~~~~~~~I~~~i~~l~~~p~ 36 (88)
T 3bpq_B 1 MKVLFAKTFVKDLKHVPGHIRKRIKLIIEECQNSNS 36 (88)
T ss_dssp --CEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 989986799999997999999999999999875989
No 4
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase/hydrolase inhibitor complex; 2.30A {Pyrococcus horikoshii OT3} SCOP: d.298.1.2
Probab=76.10 E-value=0.75 Score=25.48 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8876888999986088012378999999999876
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQA 35 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~ 35 (54)
.+.|++.|+..|+++|-.++.++...++.++.+-
T Consensus 4 ~v~~~~~a~k~l~kl~~~~~~~i~~~i~~l~~~p 37 (90)
T 1wmi_A 4 RVKIHKQVVKALQSLPKAHYRRFLEFRDILEYEP 37 (90)
T ss_dssp EEEEEHHHHHHHTTSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999989999998599999999999999997597
No 5
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=72.07 E-value=2 Score=23.11 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 876888999986088012378999999999876
Q T0538 3 LRWTSEAKTKLKNIPFFARSQAKARIEQLARQA 35 (54)
Q Consensus 3 l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~ 35 (54)
+.||+.|+..|+++|--++.++...++.+...-
T Consensus 5 i~~~~~a~k~l~kL~~~~~~~i~~~i~~l~~~~ 37 (89)
T 2khe_A 5 IEFDPRAEKELEKLDREVARRILRFLRERVATL 37 (89)
T ss_dssp EEECTTHHHHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred EEECHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 999989999998299999999999999987585
No 6
>3kha_A Toxin RELE; toxin-antitoxin systems, translational control, ribosome, repressor, stress response, transcription, transcription regulation; 2.50A {Escherichia coli k-12} PDB: 2kc8_A 2kc9_A
Probab=68.57 E-value=3 Score=22.18 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 887688899998608801237899999999987
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQ 34 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e 34 (54)
.+.||+.|+..|+++|.=++..+...+++++.+
T Consensus 4 ~i~~~~~A~k~l~kL~~~~~~rI~~~i~~L~~n 36 (95)
T 3kha_A 4 FLDFDERALKEWRKLGSTVREQLKKKLVEVLES 36 (95)
T ss_dssp EEEECHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 999998999999968999999999999998769
No 7
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV}
Probab=67.50 E-value=2.4 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8876888999986088012378999999999876
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQA 35 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e~ 35 (54)
.+.|++.|+..|+++|...+.++...+++...++
T Consensus 19 ~I~~s~~A~K~l~kL~~~~~~rI~~~i~~~l~~~ 52 (102)
T 3g5o_B 19 TVRFTTTARRDLHKLPPRILAAVVEFAFGDLSRE 52 (102)
T ss_dssp EEEEEHHHHHHHTTSCHHHHHHHHHHHTTHHHHC
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999789999998699989999999999987619
No 8
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=34.49 E-value=29 Score=16.74 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 6888999986088-0123789999999998769981388989999987569
Q T0538 5 WTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEFGQ 54 (54)
Q Consensus 5 Wt~eA~~~L~kIP-~FvR~kvr~~~E~~A~e~g~~~IT~ev~~~Ak~~fG~ 54 (54)
++++|..+|..+= -|.+. +-+....||.-.+...||.+.+.-|-...|+
T Consensus 46 is~~a~~~l~~~~e~~l~~-i~~da~~~a~hakRkTi~~~Dv~~Alrr~g~ 95 (102)
T 1id3_B 46 ISGLIYEEVRAVLKSFLES-VIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp ECTTHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 1499999999999999999-9999999999549742289999999998697
No 9
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=27.67 E-value=34 Score=16.39 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1237899999999987699813
Q T0538 19 FARSQAKARIEQLARQAEQDIV 40 (54)
Q Consensus 19 FvR~kvr~~~E~~A~e~g~~~I 40 (54)
-+..+++.-+.++|.++|++.|
T Consensus 97 ~i~~~i~~~i~~ia~~~g~~lV 118 (143)
T 1u2m_A 97 KLVTRIQTAVKSVANSQDIDLV 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999999998798499
No 10
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=18.40 E-value=50 Score=15.47 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999876998138898999998
Q T0538 25 KARIEQLARQAEQDIVTPELVEQARL 50 (54)
Q Consensus 25 r~~~E~~A~e~g~~~IT~ev~~~Ak~ 50 (54)
+...++||+++|++.|+.+.+.+-+.
T Consensus 196 ~~~~~~fA~~~~l~~isi~dli~yr~ 221 (227)
T 1snn_A 196 KNETKRYAEKHNLIYLSGEEIINYYL 221 (227)
T ss_dssp HHHHHHHHHHHTCCEEEHHHHHHHC-
T ss_pred HHHHHHHHHHCCCCEEEHHHHHHHHH
T ss_conf 89999999984997898999999999
Done!