Query T0538 NsR143, , 54 residues
Match_columns 54
No_of_seqs 103 out of 193
Neff 4.4
Searched_HMMs 15564
Date Fri May 21 18:06:46 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0538.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0538.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmia1 d.298.1.2 (A:1-88) Hyp 62.6 1.7 0.00011 22.6 1.6 33 2-34 4-36 (88)
2 d1a9xa1 a.92.1.1 (A:403-555) C 35.1 20 0.0013 16.8 5.3 49 3-51 43-93 (153)
3 d1u2ma_ f.48.1.1 (A:) Periplas 24.3 29 0.0019 15.8 2.8 21 20-40 98-118 (143)
4 d1a9xa1 a.92.1.1 (A:403-555) C 20.4 37 0.0024 15.3 4.5 49 3-51 43-93 (153)
5 d1u2ma_ f.48.1.1 (A:) Periplas 20.1 38 0.0024 15.2 2.8 21 20-40 98-118 (143)
6 d1htaa_ a.22.1.2 (A:) Archaeal 19.5 39 0.0025 15.2 4.6 48 4-52 20-68 (68)
7 d1snna_ d.115.1.2 (A:) 3,4-dih 18.6 41 0.0026 15.1 2.5 23 25-47 195-217 (219)
8 d2cpga_ a.43.1.3 (A:) Transcri 18.2 25 0.0016 16.3 1.3 17 23-39 12-28 (43)
9 d1tksa_ d.115.1.2 (A:) 3,4-dih 17.8 39 0.0025 15.2 2.2 25 25-49 176-200 (202)
10 d1k4ia_ d.115.1.2 (A:) 3,4-dih 17.7 43 0.0028 14.9 3.2 27 25-51 185-211 (216)
No 1
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=62.62 E-value=1.7 Score=22.65 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 887688899998608801237899999999987
Q T0538 2 NLRWTSEAKTKLKNIPFFARSQAKARIEQLARQ 34 (54)
Q Consensus 2 ~l~Wt~eA~~~L~kIP~FvR~kvr~~~E~~A~e 34 (54)
.+.+++.|+..|+++|-.++.++...++.++.+
T Consensus 4 ~v~~~~~A~k~l~kL~~~~~~~I~~~l~~L~~~ 36 (88)
T d1wmia1 4 RVKIHKQVVKALQSLPKAHYRRFLEFRDILEYE 36 (88)
T ss_dssp EEEEEHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 999998999999849999999999999999768
No 2
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=35.12 E-value=20 Score=16.80 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 8768889999860880123789999--999998769981388989999987
Q T0538 3 LRWTSEAKTKLKNIPFFARSQAKAR--IEQLARQAEQDIVTPELVEQARLE 51 (54)
Q Consensus 3 l~Wt~eA~~~L~kIP~FvR~kvr~~--~E~~A~e~g~~~IT~ev~~~Ak~~ 51 (54)
.-||-|-..++.+|-.|.=.+++.- +|+.-+..|...++.+.+..||..
T Consensus 43 ~G~sveeI~elTkID~WFL~qi~~Iv~~E~~l~~~~~~~l~~~~l~~aK~~ 93 (153)
T d1a9xa1 43 AGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRK 93 (153)
T ss_dssp TTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 299999998861820099999999999986653147664899999999983
No 3
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=24.31 E-value=29 Score=15.84 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 237899999999987699813
Q T0538 20 ARSQAKARIEQLARQAEQDIV 40 (54)
Q Consensus 20 vR~kvr~~~E~~A~e~g~~~I 40 (54)
+..+++.-++++|.++|++.|
T Consensus 98 i~~~i~~~i~~ia~~~g~~lV 118 (143)
T d1u2ma_ 98 LVTRIQTAVKSVANSQDIDLV 118 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHCCCEEE
T ss_conf 999999999999998798399
No 4
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]} SCOP: d1jdbb1
Probab=20.36 E-value=37 Score=15.27 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 8768889999860880123789999--999998769981388989999987
Q T0538 3 LRWTSEAKTKLKNIPFFARSQAKAR--IEQLARQAEQDIVTPELVEQARLE 51 (54)
Q Consensus 3 l~Wt~eA~~~L~kIP~FvR~kvr~~--~E~~A~e~g~~~IT~ev~~~Ak~~ 51 (54)
.-||.+-..+|.+|-.|.=.+++.- +|+.-+..|.+.++.++|..||..
T Consensus 43 ~G~sveeI~~lT~IDpwFl~qi~~iv~~e~~l~~~~~~~~~~~~l~~aK~~ 93 (153)
T d1a9xa1 43 AGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRK 93 (153)
T ss_dssp TTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 699999999987673899999999999999998569988898899999876
No 5
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]} SCOP: d1sg2b_ d1sg2a_ d1sg2c_ d1u2mb_
Probab=20.07 E-value=38 Score=15.23 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 237899999999987699813
Q T0538 20 ARSQAKARIEQLARQAEQDIV 40 (54)
Q Consensus 20 vR~kvr~~~E~~A~e~g~~~I 40 (54)
++.++..-+.++|.++|++.|
T Consensus 98 i~~~i~~~i~~ia~~~~~d~V 118 (143)
T d1u2ma_ 98 LVTRIQTAVKSVANSQDIDLV 118 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHCCCCEE
T ss_conf 999999999999987298378
No 6
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=19.54 E-value=39 Score=15.17 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 76888999986088-01237899999999987699813889899999875
Q T0538 4 RWTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (54)
Q Consensus 4 ~Wt~eA~~~L~kIP-~FvR~kvr~~~E~~A~e~g~~~IT~ev~~~Ak~~f 52 (54)
.=+.||...+.+.= .|+..-+ .....+++..|...||.+.+..|=..|
T Consensus 20 ris~ea~~~l~~~~e~fi~~l~-~~a~~~a~~~kRkTi~~~DV~~Alk~~ 68 (68)
T d1htaa_ 20 RVSDDARIALAKVLEEMGEEIA-SEAVKLAKHAGRKTIKAEDIELARKMF 68 (68)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 3219999999999999999999-999999999188807899999999739
No 7
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=18.62 E-value=41 Score=15.05 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999876998138898999
Q T0538 25 KARIEQLARQAEQDIVTPELVEQ 47 (54)
Q Consensus 25 r~~~E~~A~e~g~~~IT~ev~~~ 47 (54)
+.-.++||+++|++.|+.+.+.+
T Consensus 195 ~~~~~~fA~~~~l~~isi~dli~ 217 (219)
T d1snna_ 195 KNETKRYAEKHNLIYLSGEEIIN 217 (219)
T ss_dssp HHHHHHHHHHHTCCEEEHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 89999999984997998999883
No 8
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=18.20 E-value=25 Score=16.26 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 89999999998769981
Q T0538 23 QAKARIEQLARQAEQDI 39 (54)
Q Consensus 23 kvr~~~E~~A~e~g~~~ 39 (54)
-+-.+.|++|+|+|.+.
T Consensus 12 ~~~~~lek~a~e~g~sk 28 (43)
T d2cpga_ 12 SVLENLEKMAREMGLSK 28 (43)
T ss_dssp HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHCCCCH
T ss_conf 89989999999808639
No 9
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=17.76 E-value=39 Score=15.18 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999999987699813889899999
Q T0538 25 KARIEQLARQAEQDIVTPELVEQAR 49 (54)
Q Consensus 25 r~~~E~~A~e~g~~~IT~ev~~~Ak 49 (54)
+.-.++||+++|++.|+.+.+.+-+
T Consensus 176 ~~~~~~fA~~~~l~~isi~dli~yr 200 (202)
T d1tksa_ 176 LDDCIQFGKKHGIKIININQLVEYI 200 (202)
T ss_dssp HHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEHHHHHHHH
T ss_conf 9999999998599799899999998
No 10
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=17.71 E-value=43 Score=14.93 Aligned_cols=27 Identities=15% Similarity=-0.024 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999998769981388989999987
Q T0538 25 KARIEQLARQAEQDIVTPELVEQARLE 51 (54)
Q Consensus 25 r~~~E~~A~e~g~~~IT~ev~~~Ak~~ 51 (54)
+.-.++||+++|++.|+.+.+-+-+.+
T Consensus 185 ~~~l~~fA~~h~l~~i~i~dli~yr~~ 211 (216)
T d1k4ia_ 185 GDECVAFARRWGLKVCTIEDMIAHVEK 211 (216)
T ss_dssp HHHHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEHHHHHHHHHH
T ss_conf 199999999829969889999999986
Done!