Query T0539 HR4710B, , 81 residues
Match_columns 81
No_of_seqs 127 out of 4952
Neff 7.3
Searched_HMMs 22458
Date Fri May 21 18:04:15 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0539.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0539.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.8 2E-21 8.7E-26 125.8 2.9 69 11-80 5-73 (75)
2 2ep4_A Ring finger protein 24; 99.7 7.4E-19 3.3E-23 112.9 4.1 54 26-79 11-64 (74)
3 2ect_A Ring finger protein 126 99.7 1.1E-18 5E-23 112.0 4.8 55 25-79 10-64 (78)
4 3dpl_R Ring-box protein 1; ubi 99.7 6E-18 2.7E-22 108.4 2.7 50 28-77 35-99 (106)
5 1iym_A EL5; ring-H2 finger, ub 99.7 7.5E-18 3.3E-22 107.9 3.1 52 27-78 2-54 (55)
6 2ea6_A Ring finger protein 4; 99.6 1.7E-16 7.6E-21 101.1 3.0 51 28-78 13-67 (69)
7 1v87_A Deltex protein 2; ring- 99.6 6.2E-16 2.8E-20 98.3 3.0 68 5-78 6-93 (114)
8 2ecm_A Ring finger and CHY zin 99.6 9.6E-16 4.3E-20 97.4 3.9 51 28-78 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.6 5.8E-16 2.6E-20 98.5 2.4 50 29-78 14-75 (81)
10 1chc_A Equine herpes virus-1 r 99.5 1.7E-15 7.7E-20 96.1 4.1 46 30-77 5-50 (68)
11 2ecn_A Ring finger protein 141 99.5 6.1E-16 2.7E-20 98.4 0.6 50 26-79 11-60 (70)
12 1z6u_A NP95-like ring finger p 99.5 9.5E-16 4.2E-20 97.4 1.3 47 29-78 77-124 (150)
13 2ckl_A Polycomb group ring fin 99.5 1.6E-15 7E-20 96.3 1.7 51 26-78 11-61 (108)
14 2ct2_A Tripartite motif protei 99.5 4.2E-15 1.9E-19 94.2 3.3 54 25-78 10-67 (88)
15 2djb_A Polycomb group ring fin 99.5 3.8E-15 1.7E-19 94.4 3.0 52 25-78 10-61 (72)
16 2csy_A Zinc finger protein 183 99.5 4.3E-15 1.9E-19 94.1 2.9 46 30-78 15-60 (81)
17 1e4u_A Transcriptional repress 99.5 3.8E-15 1.7E-19 94.4 2.5 55 24-78 5-61 (78)
18 3l11_A E3 ubiquitin-protein li 99.5 3E-15 1.4E-19 94.9 1.2 47 29-78 14-61 (115)
19 2d8t_A Dactylidin, ring finger 99.5 4.1E-15 1.8E-19 94.2 1.7 48 28-78 13-60 (71)
20 1jm7_A BRCA1, breast cancer ty 99.5 2.2E-15 9.8E-20 95.6 -0.1 52 25-79 16-70 (112)
21 3fl2_A E3 ubiquitin-protein li 99.4 1.1E-14 4.9E-19 92.1 1.3 47 29-78 51-98 (124)
22 2ckl_B Ubiquitin ligase protei 99.4 1.5E-14 6.7E-19 91.4 1.9 50 28-79 52-102 (165)
23 2ysl_A Tripartite motif-contai 99.4 3.1E-14 1.4E-18 89.8 2.5 52 25-79 15-69 (73)
24 2ct0_A Non-SMC element 1 homol 99.4 6.4E-14 2.9E-18 88.2 3.4 53 25-79 10-64 (74)
25 2ecw_A Tripartite motif-contai 99.4 2E-13 8.9E-18 85.8 4.0 52 25-79 14-71 (85)
26 1rmd_A RAG1; V(D)J recombinati 99.4 6E-14 2.7E-18 88.4 1.0 49 27-78 20-69 (116)
27 2yur_A Retinoblastoma-binding 99.4 2.9E-13 1.3E-17 85.0 4.3 53 24-78 9-63 (74)
28 2ecv_A Tripartite motif-contai 99.3 6.5E-13 2.9E-17 83.2 4.5 52 25-79 14-71 (85)
29 2ecy_A TNF receptor-associated 99.3 2.9E-13 1.3E-17 85.0 2.5 51 26-79 11-62 (66)
30 1jm7_B BARD1, BRCA1-associated 99.3 2.3E-13 1E-17 85.5 2.0 48 27-78 19-66 (117)
31 1bor_A Transcription factor PM 99.3 3E-13 1.3E-17 84.9 2.4 47 28-80 4-50 (56)
32 3lrq_A E3 ubiquitin-protein li 99.3 2.2E-13 9.7E-18 85.6 1.4 49 28-78 20-69 (100)
33 2vje_B MDM4 protein; proto-onc 99.3 3.1E-13 1.4E-17 84.8 1.8 48 30-78 7-55 (63)
34 3knv_A TNF receptor-associated 99.3 1.8E-13 7.8E-18 86.1 0.0 72 3-79 6-78 (141)
35 2kre_A Ubiquitin conjugation f 99.3 5.8E-13 2.6E-17 83.5 2.1 50 26-78 25-74 (100)
36 2d8s_A Cellular modulator of i 99.3 1.5E-12 6.5E-17 81.5 3.8 51 27-77 12-68 (80)
37 2egp_A Tripartite motif-contai 99.3 4.8E-13 2.1E-17 83.9 0.6 54 23-79 5-65 (79)
38 2ysj_A Tripartite motif-contai 99.2 2E-12 8.9E-17 80.8 3.3 46 25-73 15-63 (63)
39 2vje_A E3 ubiquitin-protein li 99.2 1.7E-12 7.4E-17 81.2 2.5 50 28-78 6-56 (64)
40 2ecj_A Tripartite motif-contai 99.2 2.4E-12 1E-16 80.4 2.8 45 26-73 11-58 (58)
41 2f42_A STIP1 homology and U-bo 99.2 2.6E-12 1.1E-16 80.3 2.5 50 27-79 103-153 (179)
42 2bay_A PRE-mRNA splicing facto 99.2 2.6E-12 1.2E-16 80.2 1.5 48 29-78 2-49 (61)
43 3hct_A TNF receptor-associated 99.2 4.4E-12 2E-16 79.1 2.1 51 25-78 13-64 (118)
44 2kr4_A Ubiquitin conjugation f 99.2 6.1E-12 2.7E-16 78.4 2.2 50 26-78 10-59 (85)
45 1vyx_A ORF K3, K3RING; zinc-bi 99.1 6E-12 2.7E-16 78.4 1.4 52 27-78 3-58 (60)
46 2ea5_A Cell growth regulator w 99.1 2.8E-11 1.3E-15 75.1 3.6 47 25-78 10-57 (68)
47 1t1h_A Gspef-atpub14, armadill 99.1 3.9E-11 1.7E-15 74.4 2.8 50 26-78 4-54 (78)
48 3hcs_A TNF receptor-associated 99.0 3.4E-11 1.5E-15 74.7 1.4 53 24-79 12-65 (170)
49 3htk_C E3 SUMO-protein ligase 99.0 7.3E-11 3.2E-15 73.0 1.7 47 30-78 181-231 (267)
50 3eb5_A Baculoviral IAP repeat- 98.9 2.6E-11 1.2E-15 75.2 -1.9 44 28-78 22-66 (74)
51 3k1l_B Fancl; UBC, ring, RWD, 98.9 4.1E-10 1.8E-14 69.3 2.7 53 26-78 304-372 (381)
52 2yu4_A E3 SUMO-protein ligase 98.8 7.2E-10 3.2E-14 68.0 1.5 47 27-75 4-56 (94)
53 1wim_A KIAA0161 protein; ring 98.8 1.4E-09 6.3E-14 66.6 1.6 47 29-75 4-58 (94)
54 1wgm_A Ubiquitin conjugation f 98.7 2.3E-09 1E-13 65.5 2.3 51 25-78 17-68 (98)
55 2ecg_A Baculoviral IAP repeat- 98.7 9.8E-10 4.3E-14 67.4 -0.2 43 29-78 24-67 (75)
56 1fbv_A Signal transduction pro 98.5 3.5E-08 1.6E-12 59.6 2.0 45 31-78 333-378 (388)
57 2c2l_A CHIP, carboxy terminus 98.0 2.8E-06 1.2E-10 50.1 3.5 49 26-77 204-253 (281)
58 2ysm_A Myeloid/lymphoid or mix 94.8 0.0081 3.6E-07 32.8 1.6 32 49-80 73-108 (111)
59 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.014 6.2E-07 31.6 1.6 37 29-65 2-38 (101)
60 2yql_A PHD finger protein 21A; 93.7 0.012 5.4E-07 32.0 0.7 49 25-76 4-56 (56)
61 2ko5_A Ring finger protein Z; 93.2 0.013 5.8E-07 31.8 0.1 45 31-80 29-74 (99)
62 1we9_A PHD finger family prote 93.1 0.021 9.4E-07 30.8 1.1 52 28-79 4-61 (64)
63 1fp0_A KAP-1 corepressor; PHD 93.0 0.038 1.7E-06 29.5 2.2 49 25-76 20-72 (88)
64 1mm2_A MI2-beta; PHD, zinc fin 91.6 0.05 2.2E-06 28.9 1.5 49 27-78 6-58 (61)
65 2e6s_A E3 ubiquitin-protein li 91.3 0.078 3.5E-06 27.9 2.2 46 31-76 27-77 (77)
66 1f62_A Transcription factor WS 91.3 0.034 1.5E-06 29.7 0.3 45 32-76 2-50 (51)
67 1wil_A KIAA1045 protein; ring 90.5 0.073 3.2E-06 28.1 1.4 38 25-63 10-47 (89)
68 3i2d_A E3 SUMO-protein ligase 89.5 0.12 5.4E-06 27.0 1.9 46 30-78 249-299 (371)
69 2ysm_A Myeloid/lymphoid or mix 89.4 0.052 2.3E-06 28.8 -0.1 48 28-75 5-56 (111)
70 1wev_A Riken cDNA 1110020M19; 88.2 0.027 1.2E-06 30.2 -2.2 48 29-76 15-72 (88)
71 2e6r_A Jumonji/ARID domain-con 87.9 0.079 3.5E-06 27.9 0.1 48 28-75 14-65 (92)
72 1xwh_A Autoimmune regulator; P 87.1 0.081 3.6E-06 27.8 -0.2 47 28-77 6-56 (66)
73 1wew_A DNA-binding family prot 86.4 0.088 3.9E-06 27.6 -0.3 47 29-77 15-73 (78)
74 3a1b_A DNA (cytosine-5)-methyl 85.4 0.42 1.9E-05 24.2 2.7 44 29-76 78-134 (159)
75 1wem_A Death associated transc 84.8 0.26 1.1E-05 25.3 1.4 48 29-77 15-71 (76)
76 1g25_A CDK-activating kinase a 83.6 0.2 9E-06 25.8 0.4 49 30-78 3-54 (65)
77 1wep_A PHF8; structural genomi 83.0 0.42 1.9E-05 24.2 1.9 50 29-79 11-66 (79)
78 2k16_A Transcription initiatio 82.9 0.12 5.4E-06 26.9 -0.9 48 31-78 19-70 (75)
79 2ffw_A Midline-1; B-BOX, ring 82.3 1.7 7.7E-05 21.2 4.8 41 23-63 23-63 (78)
80 2ro1_A Transcription intermedi 81.1 0.4 1.8E-05 24.4 1.2 44 31-77 3-50 (189)
81 2ri7_A Nucleosome-remodeling f 81.1 0.09 4E-06 27.6 -2.1 47 29-76 7-59 (174)
82 2puy_A PHD finger protein 21A; 80.4 0.15 6.8E-06 26.5 -1.2 46 29-77 4-53 (60)
83 1weu_A Inhibitor of growth fam 80.4 0.91 4E-05 22.6 2.8 45 31-79 37-88 (91)
84 1rut_X Flinc4, fusion protein 78.6 0.2 8.9E-06 25.9 -1.0 49 31-79 33-81 (188)
85 2g6q_A Inhibitor of growth pro 77.2 0.36 1.6E-05 24.6 -0.1 42 31-76 12-60 (62)
86 2co8_A NEDD9 interacting prote 76.9 1.6 7.3E-05 21.3 3.3 31 29-61 14-44 (82)
87 1wee_A PHD finger family prote 75.1 0.44 2E-05 24.2 -0.1 49 30-79 16-69 (72)
88 2vpb_A Hpygo1, pygopus homolog 74.9 0.73 3.2E-05 23.1 1.0 48 28-75 6-65 (65)
89 2csz_A Synaptotagmin-like prot 71.2 2.1 9.4E-05 20.8 2.6 47 28-76 23-73 (76)
90 1joc_A EEA1, early endosomal a 70.7 1.6 7.1E-05 21.4 1.9 49 29-77 68-123 (125)
91 3c6w_A P28ING5, inhibitor of g 70.7 0.65 2.9E-05 23.3 -0.1 43 30-76 9-58 (59)
92 2ct7_A Ring finger protein 31; 70.0 0.57 2.5E-05 23.6 -0.5 38 30-67 25-65 (86)
93 2yt5_A Metal-response element- 69.1 1.9 8.5E-05 21.0 2.1 47 28-74 4-59 (66)
94 2d8y_A Eplin protein; LIM doma 68.7 2.7 0.00012 20.3 2.7 39 29-77 14-52 (91)
95 2cu8_A Cysteine-rich protein 2 68.4 3.7 0.00017 19.5 3.4 40 29-78 8-47 (76)
96 2jmi_A Protein YNG1, ING1 homo 68.2 0.95 4.2E-05 22.5 0.4 42 31-76 26-75 (90)
97 1y02_A CARP2, FYVE-ring finger 67.7 0.56 2.5E-05 23.6 -0.9 47 28-74 17-64 (120)
98 1wen_A Inhibitor of growth fam 66.7 3.9 0.00017 19.4 3.3 45 31-79 17-68 (71)
99 3kqi_A GRC5, PHD finger protei 65.9 0.9 4E-05 22.6 -0.1 48 29-77 9-62 (75)
100 1x63_A Skeletal muscle LIM-pro 65.9 3.9 0.00017 19.4 3.1 40 30-78 15-54 (82)
101 2pv0_B DNA (cytosine-5)-methyl 65.9 3 0.00013 20.0 2.5 43 30-76 93-148 (386)
102 1dvp_A HRS, hepatocyte growth 65.5 3.5 0.00016 19.6 2.8 37 28-64 159-196 (220)
103 1x4i_A Inhibitor of growth pro 64.3 0.81 3.6E-05 22.9 -0.6 47 27-77 3-56 (70)
104 1z60_A TFIIH basal transcripti 63.7 1.4 6.3E-05 21.6 0.5 45 29-73 14-58 (59)
105 1wfk_A Zinc finger, FYVE domai 63.3 3.8 0.00017 19.5 2.7 49 26-74 5-61 (88)
106 1zbd_B Rabphilin-3A; G protein 62.8 3.6 0.00016 19.6 2.5 49 27-75 52-106 (134)
107 2jrp_A Putative cytoplasmic pr 61.9 0.87 3.9E-05 22.7 -0.8 40 30-77 2-41 (81)
108 2vnf_A ING 4, P29ING4, inhibit 61.0 1.2 5.5E-05 21.9 -0.2 43 30-76 10-59 (60)
109 1vfy_A Phosphatidylinositol-3- 59.0 1.5 6.7E-05 21.5 -0.0 35 31-65 12-47 (73)
110 1z2q_A LM5-1; membrane protein 58.8 4.7 0.00021 19.0 2.5 38 28-65 19-57 (84)
111 2jne_A Hypothetical protein YF 58.7 0.55 2.4E-05 23.7 -2.3 42 28-77 30-71 (101)
112 1x6a_A LIMK-2, LIM domain kina 58.0 4.1 0.00018 19.3 2.0 36 31-77 16-51 (81)
113 2cor_A Pinch protein; LIM doma 57.2 6.5 0.00029 18.3 3.0 38 29-77 14-51 (79)
114 2cs3_A Protein C14ORF4, MY039 55.5 6.1 0.00027 18.5 2.6 37 30-67 15-53 (93)
115 2yw8_A RUN and FYVE domain-con 54.9 5.8 0.00026 18.6 2.4 37 29-65 18-55 (82)
116 2zet_C Melanophilin; complex, 53.4 5.1 0.00023 18.9 1.9 47 28-75 66-116 (153)
117 1weo_A Cellulose synthase, cat 52.8 9.4 0.00042 17.5 3.2 49 29-77 15-68 (93)
118 1x4u_A Zinc finger, FYVE domai 52.7 2.8 0.00012 20.2 0.5 37 29-65 13-50 (84)
119 2jtn_A LIM domain-binding prot 51.8 12 0.00051 17.1 3.8 38 30-77 60-97 (182)
120 1b8t_A Protein (CRP1); LIM dom 49.5 6.9 0.00031 18.2 2.1 39 30-78 115-153 (192)
121 2o35_A Hypothetical protein DU 49.1 3.1 0.00014 19.9 0.3 14 53-66 41-54 (105)
122 3fyb_A Protein of unknown func 48.5 3.2 0.00014 19.8 0.3 14 53-66 40-53 (104)
123 2jm1_A Transcriptional regulat 47.5 10 0.00045 17.4 2.7 44 30-76 62-116 (141)
124 2dj7_A Actin-binding LIM prote 46.8 14 0.00063 16.6 3.3 38 30-77 15-52 (80)
125 1a7i_A QCRP2 (LIM1); LIM domai 46.4 7.3 0.00032 18.1 1.8 27 32-60 9-35 (81)
126 1x62_A C-terminal LIM domain p 44.5 13 0.00057 16.9 2.8 28 30-60 15-42 (79)
127 2cuq_A Four and A half LIM dom 43.5 8.5 0.00038 17.7 1.8 37 31-78 16-52 (80)
128 2jmo_A Parkin; IBR, E3 ligase, 42.0 2.3 0.0001 20.6 -1.3 16 49-64 54-69 (80)
129 1x3h_A Leupaxin; paxillin fami 41.6 8.7 0.00039 17.7 1.6 37 30-77 15-51 (80)
130 1wd2_A Ariadne-1 protein homol 41.1 6.9 0.00031 18.2 1.0 39 30-68 6-49 (60)
131 2dar_A PDZ and LIM domain prot 40.9 12 0.00054 16.9 2.3 36 31-77 26-61 (90)
132 2ehe_A Four and A half LIM dom 39.1 13 0.0006 16.7 2.3 39 30-77 15-53 (82)
133 2cup_A Skeletal muscle LIM-pro 38.9 19 0.00085 16.0 3.2 44 31-78 34-77 (101)
134 2dlo_A Thyroid receptor-intera 38.8 19 0.00085 16.0 3.1 36 31-77 16-51 (81)
135 2d8x_A Protein pinch; LIM doma 38.6 17 0.00074 16.3 2.7 38 30-78 5-42 (70)
136 2d8z_A Four and A half LIM dom 38.5 17 0.00077 16.2 2.7 37 31-78 6-42 (70)
137 2kgg_A Histone demethylase jar 38.4 19 0.00086 16.0 3.3 40 34-73 6-51 (52)
138 3f6q_B LIM and senescent cell 36.7 12 0.00055 16.9 1.8 40 29-77 10-49 (72)
139 2vrw_B P95VAV, VAV1, proto-onc 34.7 22 0.001 15.6 3.6 49 28-80 355-405 (406)
140 1wyh_A SLIM 2, skeletal muscle 33.2 19 0.00087 15.9 2.3 29 31-60 6-34 (72)
141 2gmg_A Hypothetical protein PF 30.7 9.7 0.00043 17.4 0.4 27 49-80 71-98 (105)
142 1l8d_A DNA double-strand break 29.9 8.1 0.00036 17.8 -0.1 11 67-77 47-57 (112)
143 1g47_A Pinch protein; LIM doma 29.5 21 0.00092 15.8 1.9 41 28-77 9-49 (77)
144 1x4k_A Skeletal muscle LIM-pro 28.3 24 0.0011 15.5 2.1 29 31-60 6-34 (72)
145 1wig_A KIAA1808 protein; LIM d 25.6 33 0.0015 14.8 2.7 27 31-60 6-32 (73)
146 1yuz_A Nigerythrin; rubrythrin 25.4 33 0.0015 14.8 2.4 24 46-76 172-195 (202)
147 2cur_A Skeletal muscle LIM-pro 25.4 33 0.0015 14.8 2.6 26 32-60 7-32 (69)
148 1x64_A Alpha-actinin-2 associa 25.0 34 0.0015 14.7 2.5 29 29-60 24-52 (89)
149 1x68_A FHL5 protein; four-and- 24.9 24 0.0011 15.4 1.6 30 31-60 6-36 (76)
150 1x4l_A Skeletal muscle LIM-pro 24.5 25 0.0011 15.4 1.6 30 31-60 6-36 (72)
151 1faq_A RAF-1; transferase, ser 24.1 18 0.0008 16.1 0.8 30 31-62 15-44 (52)
152 2d8v_A Zinc finger FYVE domain 23.5 25 0.0011 15.4 1.5 29 31-63 9-38 (67)
153 3kv5_D JMJC domain-containing 22.6 15 0.00068 16.5 0.2 47 29-75 33-87 (488)
154 2row_A RHO-associated protein 20.8 37 0.0017 14.5 1.9 45 29-76 34-82 (84)
155 3ihp_A Ubiquitin carboxyl-term 20.6 42 0.0019 14.3 3.9 32 32-63 48-80 (854)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2e-21 Score=125.80 Aligned_cols=69 Identities=30% Similarity=0.752 Sum_probs=58.4
Q ss_pred HHHHCCCEEECCCCCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9863792661266666677760421346677897156500344337732168986089988026758888
Q T0539 11 SIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 80 (81)
Q Consensus 11 ~i~~l~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~p 80 (81)
...+|+..++...... +++.+|+|||++|+.++.++.++|+|.||..||.+||+.+++||+||++++|.
T Consensus 5 s~~~lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~v~~~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQ-SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCS-SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCEEECCCCCC-CCCCCCEEECCEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6020882776877778-88999977796700798689704865428488999987194058929938899
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-19 Score=112.92 Aligned_cols=54 Identities=24% Similarity=0.699 Sum_probs=47.9
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 667776042134667789715650034433773216898608998802675888
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 79 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~ 79 (81)
..+++..|+||+++|..++.++.++|+|.||.+||.+||+.+++||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 489999975319676579878985489953099999999839948373912304
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-18 Score=112.03 Aligned_cols=55 Identities=40% Similarity=1.035 Sum_probs=49.0
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6667776042134667789715650034433773216898608998802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~ 79 (81)
....++.+|+||+++|..++.++.++|+|.||..||.+|++.+++||+||++|+.
T Consensus 10 e~~~~~~eC~IC~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred HHCCCCCCCEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 2279989993449575079847971699951579999999809918787898889
No 4
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 1u6g_B 2hye_D* 1ldj_B 1ldk_C
Probab=99.68 E-value=6e-18 Score=108.39 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=42.6
Q ss_pred CCCCCCCEECCCCCCCC---------------EEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 77760421346677897---------------156500344337732168986089988026758
Q T0539 28 GQEMCCPICCSEYVKGE---------------VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
..+.+|+||++.|.... .+..++|+|.||.+||.+||+.+++||+||+++
T Consensus 35 ~~~~~CaIC~~~~~~~~~~c~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~CPlCR~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 88985800386561878323203133567774035414553366199999998789088998746
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.68 E-value=7.5e-18 Score=107.91 Aligned_cols=52 Identities=40% Similarity=0.911 Sum_probs=46.2
Q ss_pred CCCCCCCCEECCCCCCCCEEEECC-CCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 677760421346677897156500-3443377321689860899880267588
Q T0539 27 VGQEMCCPICCSEYVKGEVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
.+++.+|+||+++|..++.++.++ |+|.||..||.+|++++++||+||+.+.
T Consensus 2 ~dd~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~Wl~~~~~CP~CR~~i~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCCCEEECCEEECCCEEEECCCCCCEECHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 88999986799485579878980898987769999999971991817497858
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=101.13 Aligned_cols=51 Identities=31% Similarity=0.761 Sum_probs=43.5
Q ss_pred CCCCCCCEECCCCC----CCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 77760421346677----8971565003443377321689860899880267588
Q T0539 28 GQEMCCPICCSEYV----KGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~----~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
.+..+|+|||+.|. .+..++.++|||.||..||.+|++.+++||+||++|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~Fc~~Ci~~wl~~~~~CP~CR~~i~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCCHHHHCCCCCCCCEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9996995169766251235777486778982538999999982997988878378
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.57 E-value=6.2e-16 Score=98.31 Aligned_cols=68 Identities=24% Similarity=0.440 Sum_probs=46.6
Q ss_pred CCCCHHHHHHCCCEEECCCCCCCCCCCCCCEECCCCCC---------------CCEEEECCCCCCCCCCCHHHHHHCCC-
Q ss_conf 88796998637926612666666777604213466778---------------97156500344337732168986089-
Q T0539 5 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVK---------------GEVATELPCHHYFHKPCVSIWLQKSG- 68 (81)
Q Consensus 5 PPas~~~i~~l~~~~~~~~~~~~~~~~~C~ICl~~~~~---------------~~~~~~l~C~H~Fh~~Ci~~Wl~~~~- 68 (81)
...++++++++.. . .....+.+|+||++++.. ...+..++|||.||..||.+||+.++
T Consensus 6 s~~pe~v~~~~~~-~-----v~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~l~~CgH~FH~~Ci~~Wl~~~~~ 79 (114)
T 1v87_A 6 SGEPEQVIRKYTE-E-----LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK 79 (114)
T ss_dssp SCCHHHHHHHHEE-E-----CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHH-H-----HCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 8985999998616-5-----137971015454531137765334343334466641687899991419999999997587
Q ss_pred ----CCCCCCCCCC
Q ss_conf ----9880267588
Q T0539 69 ----TCPVCRCMFP 78 (81)
Q Consensus 69 ----~CP~CR~~~p 78 (81)
+||+||..+.
T Consensus 80 ~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 80 DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCBCTTTCCBSS
T ss_pred CCCCCCCCCCCCCC
T ss_conf 89841656556005
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=9.6e-16 Score=97.37 Aligned_cols=51 Identities=31% Similarity=0.689 Sum_probs=43.7
Q ss_pred CCCCCCCEECCCCCCC-CEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7776042134667789-71565003443377321689860899880267588
Q T0539 28 GQEMCCPICCSEYVKG-EVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~-~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
.++.+|+||+++|..+ +.++.++|+|.||.+||.+|++.+++||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~p~s 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCCCEEECCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9898796678482149806997898995569999999986994882869898
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.8e-16 Score=98.48 Aligned_cols=50 Identities=28% Similarity=0.732 Sum_probs=41.5
Q ss_pred CCCCCCEECCCCCCC------------CEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 776042134667789------------71565003443377321689860899880267588
Q T0539 29 QEMCCPICCSEYVKG------------EVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~------------~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
++..|+||++.+.+. ..+..++|+|.||..||.+||+.+++||+||+++.
T Consensus 14 ~~d~C~IC~~~~~~~c~~c~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~tCP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCEECCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 89858858800005261332224556646685888980779999999986997882674221
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.55 E-value=1.7e-15 Score=96.09 Aligned_cols=46 Identities=33% Similarity=0.891 Sum_probs=40.9
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
..+|+||++.+.+ ..+.++|||.||..||.+|++.+++||+||+++
T Consensus 5 ~d~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~wl~~~~~CP~CR~~i 50 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCCCCCCCCC--CCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999008939668--828808899186899999998399188778670
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.1e-16 Score=98.37 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=41.8
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 667776042134667789715650034433773216898608998802675888
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 79 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~ 79 (81)
...++..|+||++.+.. ++++|+|.||..||.+|++.+++||+||++|..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~C~H~fc~~Ci~~~l~~~~~CP~CR~~i~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCCEEECCCCCC----EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 48998979543758866----477899971489999999819969985977458
No 12
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.53 E-value=9.5e-16 Score=97.40 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=39.8
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089-9880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p 78 (81)
++..|+||++.|.+. +.++|||.||..||.+|++.+. +||+||+.|-
T Consensus 77 ~~~~C~IC~e~~~~p---v~~~CgH~FC~~CI~~wl~~~~~~CP~CR~~i~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCCC---EECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 778993829504696---788898972178899999828998987369667
No 13
>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A
Probab=99.52 E-value=1.6e-15 Score=96.31 Aligned_cols=51 Identities=25% Similarity=0.718 Sum_probs=44.0
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 66777604213466778971565003443377321689860899880267588
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...++..|+||++.|.+ .+..++|||.||..||.+|++.+++||+||+.+.
T Consensus 11 ~l~~~l~C~IC~~~~~~--pv~~~~CgH~FC~~Ci~~~l~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HHGGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred HCCCCCCCCCCCHHHHC--CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 29999999778956537--8768999974379999999804999999855515
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-15 Score=94.17 Aligned_cols=54 Identities=26% Similarity=0.631 Sum_probs=44.2
Q ss_pred CCCCCCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHHCCC---CCCCCCCCCC
Q ss_conf 666777604213466778971-56500344337732168986089---9880267588
Q T0539 25 GAVGQEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQKSG---TCPVCRCMFP 78 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~~p 78 (81)
+..+++.+|+||++.|+.++. .+.++|||.||..||.+|++.+. +||+||+.+.
T Consensus 10 ~~l~e~l~C~IC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 6631078998177333367744175589997317999999996899869999998610
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.8e-15 Score=94.42 Aligned_cols=52 Identities=25% Similarity=0.555 Sum_probs=44.2
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 666777604213466778971565003443377321689860899880267588
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
....++.+|+||++.|.+ .++.++|+|.||..||.+|+..+++||+||+.+-
T Consensus 10 ~~~~~~~~C~IC~~~~~~--~v~~~~C~H~fc~~Ci~~~l~~~~~CP~Cr~~i~ 61 (72)
T 2djb_A 10 SELTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred HHCCCCCEEEECCCCCCC--CEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 568999991615951109--8397899975762999999985991969296657
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-15 Score=94.14 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=40.7
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7604213466778971565003443377321689860899880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...|+||++.|.+. +.++|||.||..||.+|++.+++||+||+.+-
T Consensus 15 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCCCCCCCE---EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 56474402303581---77566982059999999974992889895652
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.50 E-value=3.8e-15 Score=94.37 Aligned_cols=55 Identities=22% Similarity=0.499 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHHC-CCCCCCCCCCCC
Q ss_conf 6666777604213466778971-565003443377321689860-899880267588
Q T0539 24 HGAVGQEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 78 (81)
Q Consensus 24 ~~~~~~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~~p 78 (81)
.+..++..+|+||+++|+.++. +..++|||.||..|+.+|++. +.+||+||+++.
T Consensus 5 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~~c~~C~~~~~~~~~~~CP~Cr~~~~ 61 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 777788992972681354795027747998873899999986637998838498788
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens}
Probab=99.49 E-value=3e-15 Score=94.87 Aligned_cols=47 Identities=36% Similarity=0.791 Sum_probs=40.3
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089-9880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p 78 (81)
++.+|+||++.|.+. +.++|||.||..||..|+..++ +||+||+++.
T Consensus 14 ed~~C~IC~~~~~~p---v~lpCgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHHHHTTTTTSBCTTTCCBCH
T ss_pred CCCCCCCCCCCCCCC---EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 979996888210881---780599627899999999988092989888685
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.1e-15 Score=94.23 Aligned_cols=48 Identities=31% Similarity=0.564 Sum_probs=42.0
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 777604213466778971565003443377321689860899880267588
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
....+|+||++.+.+ .+.++|||.||..||.+|++.+++||+||+.|+
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~i~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCEECCCCCC---EEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 979879716901298---088089995679999999980896889495589
No 20
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=2.2e-15 Score=95.58 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=42.4
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC---CCCCCCCCCCC
Q ss_conf 66677760421346677897156500344337732168986089---98802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG---TCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~~p~ 79 (81)
....+...|+||++.|.+. +.++|||.||..||.+|+..+. +||+||+.+.+
T Consensus 16 ~~l~~~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HHCCCCCCCCCCCCHHCCE---EECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 9633276997438131895---888889810699999999948899989699883876
No 21
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.44 E-value=1.1e-14 Score=92.10 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=39.9
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089-9880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p 78 (81)
++.+|+||++.|.+. +.++|||.||..||.+|++.++ +||+||+++-
T Consensus 51 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~l~~~~~~CP~CR~~i~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCCCHHHHCC---CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 218984859076657---647889852388999999848898968799477
No 22
>2ckl_B Ubiquitin ligase protein RING2; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_B
Probab=99.44 E-value=1.5e-14 Score=91.39 Aligned_cols=50 Identities=30% Similarity=0.651 Sum_probs=41.2
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCC
Q ss_conf 7776042134667789715650034433773216898608-998802675888
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 79 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p~ 79 (81)
.++..|+||++.|.+ .+...+|||.||..||.+|++.+ .+||+||+.+..
T Consensus 52 ~~~~~C~IC~~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCCCCCHHHC--CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 412899148843116--375799998414023899998199989898897866
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-14 Score=89.84 Aligned_cols=52 Identities=27% Similarity=0.648 Sum_probs=42.5
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC---CCCCCCCCCCC
Q ss_conf 66677760421346677897156500344337732168986089---98802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG---TCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~~p~ 79 (81)
+..+++..|+||++.+.+ .+.++|||.||..||.+|++.++ +||+||+.+.+
T Consensus 15 ~~l~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHCCCCCCCCCCCCCCCC---EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 756006898675821089---1881799836799999999977998889798998965
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.4e-14 Score=88.25 Aligned_cols=53 Identities=28% Similarity=0.617 Sum_probs=42.7
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC--CCCCCCCCCCCC
Q ss_conf 6667776042134667789715650034433773216898608--998802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~~p~ 79 (81)
...++..+|+||++.+..+ +..++|+|.||..||.+|++.+ .+||+||+++|-
T Consensus 10 ~~~d~~~~C~IC~~~~~~~--~~~~~C~h~fh~~Cl~~w~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCCCCCCEECCCCCCCC--CEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6688799990287507788--787999980585899999997689849888780746
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2e-13 Score=85.80 Aligned_cols=52 Identities=29% Similarity=0.781 Sum_probs=42.3
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC------CCCCCCCCCCC
Q ss_conf 66677760421346677897156500344337732168986089------98802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG------TCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~------~CP~CR~~~p~ 79 (81)
+...++..|+||++.|.+. +.++|||.||..||.+|++.+. +||+||+.+..
T Consensus 14 ~~l~~~l~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHCCCCCCCCCCCCHHCCC---EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7560239986978330691---687899716399999999975167899769895997871
No 26
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.37 E-value=6e-14 Score=88.42 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=40.8
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCC
Q ss_conf 67776042134667789715650034433773216898608-99880267588
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFP 78 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p 78 (81)
..++.+|+||++.|.+. +.++|||.||..||.+|++.+ .+||+||+.+.
T Consensus 20 ~~~~l~CpIC~~~~~~p---v~~~CgH~FC~~Ci~~~l~~~~~~CP~CR~~~~ 69 (116)
T 1rmd_A 20 FVKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEEEECCCCCCCC---CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 28798910169010385---537979807199999999988196988898388
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-13 Score=85.02 Aligned_cols=53 Identities=23% Similarity=0.446 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC--CCCCCCCCCCC
Q ss_conf 66667776042134667789715650034433773216898608--99880267588
Q T0539 24 HGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFP 78 (81)
Q Consensus 24 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~~p 78 (81)
.....++..|+||++.|.+ .++...|+|.||..||.+|+..+ .+||+||+++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~--p~~~~~CgH~fc~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTD--AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTT--CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCCCCCCCCHHHCC--CEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 7889988999654916409--718188998788999999999669973929898276
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.5e-13 Score=83.24 Aligned_cols=52 Identities=37% Similarity=0.804 Sum_probs=42.0
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC------CCCCCCCCCCCC
Q ss_conf 6667776042134667789715650034433773216898608------998802675888
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS------GTCPVCRCMFPP 79 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~------~~CP~CR~~~p~ 79 (81)
....++..|+||++.|.+. +.++|||.||..||.+|++.+ .+||+||+.+..
T Consensus 14 ~~~~e~l~CpIC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HCCCCCCCCCCCCCCCCCC---EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 0486259991828504784---780798727299999999973046899969696997861
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-13 Score=85.03 Aligned_cols=51 Identities=22% Similarity=0.498 Sum_probs=42.1
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCCC
Q ss_conf 6677760421346677897156500344337732168986089-98802675888
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP 79 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p~ 79 (81)
..+++..|+||++.+.+. +.++|||.||..||.+|++.++ +||+||+.+-.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~i~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCCCCCCCHHCCC---EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 788779998989131596---8888898689999999999880968585899972
No 30
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=2.3e-13 Score=85.47 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=39.1
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 6777604213466778971565003443377321689860899880267588
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
.++...|+||++.|.+ .+..++|||.||..||.+|+.. +||+||+.+.
T Consensus 19 l~~~L~C~IC~~~~~~--pv~l~~CgH~FC~~Ci~~~~~~--~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCS
T ss_pred CCCCCCCCCCCCCCCC--CEEECCCCCHHHHHHHHHHHHC--CCCCCCCCCC
T ss_conf 8557998889830049--7276899987689999999965--4988889177
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=3e-13 Score=84.91 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=39.3
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 77760421346677897156500344337732168986089988026758888
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 80 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~p 80 (81)
.+...|+||++.|.+. +.++|||.||..||++| +.+||+||++++++
T Consensus 4 ~~~l~C~IC~~~~~~~---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred CCCCCCCCCCCCCCCC---EEECCCCHHHHHHHHCC---CCCCCCCCCCCCCC
T ss_conf 6788995259412896---89038788889998569---89797989957889
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=2.2e-13 Score=85.61 Aligned_cols=49 Identities=22% Similarity=0.585 Sum_probs=39.3
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCC
Q ss_conf 7776042134667789715650034433773216898608-99880267588
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p 78 (81)
.+..+|+||++.+.+ .+....|||.||..||.+|+..+ ++||+||+.+.
T Consensus 20 ~~~~~C~IC~~~~~~--~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCCC--EEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 777999764755899--56869999870887769999749897988589798
No 33
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.31 E-value=3.1e-13 Score=84.81 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=40.3
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCC-CCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 76042134667789715650034433-77321689860899880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...|+||++++.++ .+..+||||.| |..|+..|++.+++||+||+++-
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~CR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCC-EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99694689698499-99964989974369888999864996965594786
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.30 E-value=1.8e-13 Score=86.08 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCCC
Q ss_conf 878879699863792661266666677760421346677897156500344337732168986089-98802675888
Q T0539 3 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP 79 (81)
Q Consensus 3 ~~PPas~~~i~~l~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p~ 79 (81)
..||++.+..+ +.+..+......++...|+||++.+.+ . +.++|||.||..||.+|+..++ +||.||.++..
T Consensus 6 ~~~~~~~~~~~--~g~~~~~~~~~~~~~~~CpIC~~~l~~--P-v~~~CgH~FC~~Ci~~~l~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 6 VTPPGSLELLQ--PGFSKTLLGTKLEAKYLCSACRNVLRR--P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp ---------CC--CSBCGGGTGGGCCGGGBCTTTCSBCSS--E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCCCCCCCCCC--CCCCHHHHCCCCCCCCCCCCCCCHHHC--C-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89897544458--998723313579998899788925409--1-7998998508999999999888977878754566
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens}
Probab=99.28 E-value=5.8e-13 Score=83.50 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 66777604213466778971565003443377321689860899880267588
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...++..|+||++.|.+. ++++|||.|+..||.+|+..+++||+||+.+-
T Consensus 25 ~~P~~~~CpIc~~~m~dP---V~~~cGhtf~r~cI~~~l~~~~~cP~~r~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CCCCCCCCCCCCCHHCCC---EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 897307986868741285---67899974108999999816887999888887
No 36
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=81.48 Aligned_cols=51 Identities=24% Similarity=0.588 Sum_probs=39.8
Q ss_pred CCCCCCCCEECCCCCCCCEEEEC----CCCCCCCCCCHHHHHHCC--CCCCCCCCCC
Q ss_conf 67776042134667789715650----034433773216898608--9988026758
Q T0539 27 VGQEMCCPICCSEYVKGEVATEL----PCHHYFHKPCVSIWLQKS--GTCPVCRCMF 77 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l----~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~~ 77 (81)
.+++.+|.||+++++.++.++.. .|.|.||..||.+|+..+ .+||+||+++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~pC~C~g~~~~~H~~Cl~~W~~~~~~~~Cp~Cr~~y 68 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 898985669585130898537135458852008697999998027978686889821
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=4.8e-13 Score=83.89 Aligned_cols=54 Identities=28% Similarity=0.719 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-------CCCCCCCCCCCC
Q ss_conf 666667776042134667789715650034433773216898608-------998802675888
Q T0539 23 DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-------GTCPVCRCMFPP 79 (81)
Q Consensus 23 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-------~~CP~CR~~~p~ 79 (81)
..+...++..|+||++.|.+. +.++|||.||..||.+|++.+ ..||+||+.+..
T Consensus 5 ~~~~i~e~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCCCCCCCCCCCCHHHHCC---EECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 766675258991719174485---7478887073999999999742147889869998985772
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2e-12 Score=80.79 Aligned_cols=46 Identities=30% Similarity=0.723 Sum_probs=38.0
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC---CCCCC
Q ss_conf 66677760421346677897156500344337732168986089---98802
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG---TCPVC 73 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~---~CP~C 73 (81)
+...++..|+||++.|.+. +.++|||.||..||.+|++.++ +||+|
T Consensus 15 ~~l~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHCCCCCCCCCCCCHHCCE---EEECCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7562068986849054891---892799875399999999967998999779
No 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.24 E-value=1.7e-12 Score=81.21 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=40.4
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCC-CCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7776042134667789715650034433-77321689860899880267588
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
++...|+||++.+.+. .+..++|||.| |..|+.+|++.+++||+||+++-
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~~CgH~~~C~~C~~~~~~~~~~CP~CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCCCCCCCCCCCCCC-EEEECCCCCEEHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 9899690779658788-99815969914359999998748991910891053
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=80.45 Aligned_cols=45 Identities=29% Similarity=0.756 Sum_probs=36.9
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC---CCCCCC
Q ss_conf 667776042134667789715650034433773216898608---998802
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS---GTCPVC 73 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~---~~CP~C 73 (81)
...++.+|+||++.+.+. +.++|||.||..||.+|++.. .+||+|
T Consensus 11 ~l~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HCCCCCCCCCCCCCCCCC---EEECCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 470169986847311893---890688715799999999968998989839
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.22 E-value=2.6e-12 Score=80.27 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCC
Q ss_conf 67776042134667789715650034433773216898608-998802675888
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 79 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p~ 79 (81)
..++..|+||++.|.+ ++ +++|||+|+..||.+||+.+ .+||+||+.|-+
T Consensus 103 ~P~~f~CpI~~elm~d--Pv-~~~~gh~y~~~~i~~~l~~~~~~cP~~~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMRE--PC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSS--EE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCHHHCCCCCCCCCCC--CC-CCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 9623067263874758--67-189989786999999998784989899696872
No 42
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.19 E-value=2.6e-12 Score=80.21 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 77604213466778971565003443377321689860899880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
....|+||++.+.+ .+....|||+|+++||.+|++++++||+||+.+-
T Consensus 2 s~l~C~Ic~~~~~~--Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPRR--PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCSS--EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred CEEECCCCCCHHHH--HHCCCCCCCEECHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 86580497937874--1111259938538888777503356887588287
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=4.4e-12 Score=79.09 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=41.9
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCC
Q ss_conf 6667776042134667789715650034433773216898608-99880267588
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFP 78 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p 78 (81)
...+++..|+||++.+.+ . +.++|||.||..||.+|++.+ ..||+||+.+.
T Consensus 13 ~~~~~~l~C~IC~~~~~~--P-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 13 PPLESKYECPICLMALRE--A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS--E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCCHHHC--C-EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 899988899797945309--4-995899716238999999808997875666566
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.16 E-value=6.1e-12 Score=78.38 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=43.3
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 66777604213466778971565003443377321689860899880267588
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...++..|+||++.|.+. +.++|||.|+..||.+|++.+++||+||+.+.
T Consensus 10 ~~P~~l~CpI~~~lm~dP---V~~~cGh~f~~~~I~~~~~~~~~cP~t~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCCCCCC---EECCCCCEEEHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 597516885868814598---88699998609999999976998979879888
No 45
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.14 E-value=6e-12 Score=78.43 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=38.9
Q ss_pred CCCCCCCCEECCCCCCCCEE--EECCCCCCCCCCCHHHHHHCC--CCCCCCCCCCC
Q ss_conf 67776042134667789715--650034433773216898608--99880267588
Q T0539 27 VGQEMCCPICCSEYVKGEVA--TELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFP 78 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~--~~l~C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~~p 78 (81)
.++...|.||+++++..... ....|+|.||..||.+|++.+ .+||+||+++-
T Consensus 3 dee~~~C~IC~~~~~~~~~~~c~c~gc~h~~H~~Cl~~W~~~~~~~~Cp~Cr~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCEECCCCCCCCCEEECCCCCCCCEECHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 77899995048716655302113489756786999877658657984877789854
No 46
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=75.06 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=37.7
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCC-CCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 666777604213466778971565003443-377321689860899880267588
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...+++.+|.||++.+.+ ++.+||+|. ||..|+.+| .+||+||+.+-
T Consensus 10 ~~~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~----~~CP~Cr~~i~ 57 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQ 57 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHHC----SSCTTTCCCCC
T ss_pred CCCCCCCCCCCCCCCCCC---EEEECCCCCCHHHHHHHHC----CCCCCCCCCCC
T ss_conf 889994949688843898---8997899724327898552----80879896822
No 47
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.07 E-value=3.9e-11 Score=74.39 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=42.6
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCCC
Q ss_conf 6677760421346677897156500344337732168986089-9880267588
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 78 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~p 78 (81)
...++..|+||++.|.+. ++++|||.|+..||.+|++.++ +||+||..+.
T Consensus 4 eiP~~l~CpIc~~~m~dP---V~~~cGhtfc~~ci~~~~~~~~~~cP~~~~~l~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCHHHCC---EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 889627991708220242---165688561699999999988886898767377
No 48
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.03 E-value=3.4e-11 Score=74.68 Aligned_cols=53 Identities=25% Similarity=0.573 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCC
Q ss_conf 66667776042134667789715650034433773216898608-998802675888
Q T0539 24 HGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 79 (81)
Q Consensus 24 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~~p~ 79 (81)
....+++.+|+||++.+.+ . +.++|||.||..||.+|++.+ ..||+||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~--P-v~~~CgH~fC~~Cl~~~l~~~~~~Cp~c~~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALRE--A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSS--E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCCCCHHHC--C-EECCCCCCEECCHHHHHHHHCCCCCCCCCCEECC
T ss_conf 6789987899898915419--1-8878997530518999998447677778650011
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.99 E-value=7.3e-11 Score=73.01 Aligned_cols=47 Identities=30% Similarity=0.707 Sum_probs=39.7
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC--CCCC--CCCCCC
Q ss_conf 760421346677897156500344337732168986089--9880--267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG--TCPV--CRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~--~CP~--CR~~~p 78 (81)
+..||||++.|.+ +++...|||.|+..||.+|+..++ +||+ ||+.+.
T Consensus 181 ~~~CPi~~~~~~~--Pv~~~~C~h~f~~~~i~~~~~~~~~~~CP~~gC~~~~~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred EEECCCCCHHHHC--CCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 5589170848762--16347799866799999999867999999861258578
No 50
>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain, apoptosis, chromosomal rearrangement, cytoplasm, metal-binding, polymorphism, zinc; 2.00A {Homo sapiens} PDB: 3eb6_A
Probab=98.95 E-value=2.6e-11 Score=75.22 Aligned_cols=44 Identities=30% Similarity=0.743 Sum_probs=35.6
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCC-CCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 77760421346677897156500344-3377321689860899880267588
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHH-YFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H-~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
.++..|+||++++.+ ++.+|||| .||..|+.+| ..||+||+.+-
T Consensus 22 ~~~~~C~IC~~~~~~---~~~~pC~H~~~C~~C~~~~----~~CP~CR~~i~ 66 (74)
T 3eb5_A 22 QEERTCKVCMDKEVS---IVFIPCGHLVVCKDCAPSL----RKCPICRSTIK 66 (74)
T ss_dssp HHHHBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCSSSCCBCC
T ss_pred CCCCCCCCCCCCCCC---EEEECCCCCCHHHHHHHHC----CCCCCCCHHHH
T ss_conf 248978667943888---4994787605389999546----88987194022
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.90 E-value=4.1e-10 Score=69.25 Aligned_cols=53 Identities=25% Similarity=0.670 Sum_probs=39.8
Q ss_pred CCCCCCCCCEECCCCCCCCEE-----EECCCCCCCCCCCHHHHHHC-----------CCCCCCCCCCCC
Q ss_conf 667776042134667789715-----65003443377321689860-----------899880267588
Q T0539 26 AVGQEMCCPICCSEYVKGEVA-----TELPCHHYFHKPCVSIWLQK-----------SGTCPVCRCMFP 78 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~-----~~l~C~H~Fh~~Ci~~Wl~~-----------~~~CP~CR~~~p 78 (81)
..+++.+|.||+....+++.+ -...|+|.||..||.+||.. -+.||+|++.+-
T Consensus 304 ~dd~~~~CgICy~~~L~~~~vPd~~C~n~~C~~~FH~~CL~eWLrsl~~sr~sF~~iFG~CPyC~~~is 372 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred HCCCCCCCCEEHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 123468476112432589987753458643587216789999998377876464214423889997122
No 52
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=7.2e-10 Score=68.03 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=37.4
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC------CCCCCCCC
Q ss_conf 67776042134667789715650034433773216898608------99880267
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS------GTCPVCRC 75 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~------~~CP~CR~ 75 (81)
...+..|+||++.|.+ +++...|||.|+..||..|+..+ ..||+|+.
T Consensus 4 ~~~~l~CpIc~~~~~d--PV~~~~CgH~fc~~ci~~~~~~~~~~~~~~~CP~c~c 56 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK--PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGC 56 (94)
T ss_dssp CSSCCBCTTTCSBCSS--EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTC
T ss_pred CCCCCCCCCCCCHHHC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8977499352967649--7775678647789999999995677799998998886
No 53
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.4e-09 Score=66.57 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=38.5
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC----C----CCCCCCC
Q ss_conf 776042134667789715650034433773216898608----9----9880267
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS----G----TCPVCRC 75 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~----~----~CP~CR~ 75 (81)
...+|+||++++...+....++|+|.||.+|+..|++.+ + +||.|+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~~~~~~i~~~~~~~i~CP~~~C 58 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8893975897460787587689999286602999999998528967557929999
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.74 E-value=2.3e-09 Score=65.54 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=41.8
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCC-CCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 6667776042134667789715650034-43377321689860899880267588
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCH-HYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
....++..|+||++.|.+. ++++|+ |.|++.||.+|+..++.||+||..+.
T Consensus 17 ~~~P~~f~CPI~~~lm~dP---V~~~~~~~tyer~~I~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CCCHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 1890760983703488768---872112017449999999861787776535454
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.8e-10 Score=67.38 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=34.6
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCC-CCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7760421346677897156500344-3377321689860899880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHH-YFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H-~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
++..|+||++.+.+ ++.+|||| .||..|+..| ..||+||+.+-
T Consensus 24 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~I~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCC---EEEECCCCCCCCHHHHCCC----CCCCCCCCEEE
T ss_conf 58968739856888---4996799856062777689----85977393603
No 56
>1fbv_A Signal transduction protein CBL; CBL, ZAP-70, phosphorylation, tyrosine kinase, ubiquitination, protein degradation,, ligase; HET: PTR; 2.90A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 g.44.1.1 PDB: 2k4d_A
Probab=98.47 E-value=3.5e-08 Score=59.60 Aligned_cols=45 Identities=29% Similarity=0.823 Sum_probs=37.2
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHC-CCCCCCCCCCCC
Q ss_conf 604213466778971565003443377321689860-899880267588
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 78 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~~p 78 (81)
.-|-||-|.- ..+++-||||..|..|+..|-.. ..+||+||.++-
T Consensus 333 elCKIC~e~~---Kdv~iePCGHLlC~~CL~~wq~s~~~~CPfCR~eik 378 (388)
T 1fbv_A 333 QLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (388)
T ss_dssp TBCTTTSSSB---CCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCC
T ss_pred HHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 7878753058---874004571078789998874458998986332532
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.01 E-value=2.8e-06 Score=50.14 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCCCCCCCC
Q ss_conf 6677760421346677897156500344337732168986089-988026758
Q T0539 26 AVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMF 77 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~~ 77 (81)
.......|+|+++.+.+. +.++|||+|+..||..|++..+ .||+||+.+
T Consensus 204 ~~~~~~~~~i~~~~~~~P---v~~~~g~tyer~~i~~~l~~~~~~~P~t~~~L 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 001003685202468898---63789872789999999987869999996998
No 58
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.77 E-value=0.0081 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.547 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCHHHHHHCCC----CCCCCCCCCCCC
Q ss_conf 00344337732168986089----988026758888
Q T0539 49 LPCHHYFHKPCVSIWLQKSG----TCPVCRCMFPPP 80 (81)
Q Consensus 49 l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~~p~p 80 (81)
..|...||..|+...+.... .||.|+.-+..|
T Consensus 73 ~~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~c~~~~ 108 (111)
T 2ysm_A 73 DTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGP 108 (111)
T ss_dssp SSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCCC
T ss_conf 899978423558987474889885992788168779
No 59
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.14 E-value=0.014 Score=31.65 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=30.2
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 7760421346677897156500344337732168986
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQ 65 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~ 65 (81)
++..|.||++.+.......-+.|++.||..|+..+-.
T Consensus 2 e~l~C~~C~~~~~~~a~~~C~~C~~~~C~~C~~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCCCCEECHHHCCHHHHHHCHHHHH
T ss_conf 9649978899867860378935186330557865522
No 60
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.71 E-value=0.012 Score=31.97 Aligned_cols=49 Identities=27% Similarity=0.633 Sum_probs=33.7
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCC
Q ss_conf 66677760421346677897156500344337732168986089----98802675
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCM 76 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 76 (81)
+....+..|.||.+ .++.+.--.|.-.||..|+..-+.... .||.||.+
T Consensus 4 ~~~~~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 56 (56)
T 2yql_A 4 GSSGHEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56 (56)
T ss_dssp CCCSSCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHCC
T ss_pred CCCCCCCCCCCCCC---CCEEEECCCCCHHHCHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf 88887873647899---894777799793358655699757589979899267793
No 61
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.19 E-value=0.013 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.769 Sum_probs=33.5
Q ss_pred CCCCEECCCCCCCCEEEECCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6042134667789715650034-4337732168986089988026758888
Q T0539 31 MCCPICCSEYVKGEVATELPCH-HYFHKPCVSIWLQKSGTCPVCRCMFPPP 80 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~-H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~p 80 (81)
.-|--|- |.+. .++ .|. |..|..|+...+..++.||+|...+|.-
T Consensus 29 ~nCKsCW--f~~k-~Lv--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 74 (99)
T 2ko5_A 29 QFCKSCW--FENK-GLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSC--SCCS-SEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CCCHHHH--HCCC-CEE--EECCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 3465131--0468-712--23420449999999873046776246758861
No 62
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.12 E-value=0.021 Score=30.75 Aligned_cols=52 Identities=29% Similarity=0.548 Sum_probs=35.1
Q ss_pred CCCCCCCEECCCCCCCCEE-EECCCCCCCCCCCHHHHHHC-----CCCCCCCCCCCCC
Q ss_conf 7776042134667789715-65003443377321689860-----8998802675888
Q T0539 28 GQEMCCPICCSEYVKGEVA-TELPCHHYFHKPCVSIWLQK-----SGTCPVCRCMFPP 79 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~-~~l~C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~~~p~ 79 (81)
.....|.||...+..++.+ .--.|+..||..|+.-.... .-.||.|+..--|
T Consensus 4 ~s~~~C~~C~~~~~~~~~~I~C~~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p 61 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCC
T ss_conf 8959385889987999888678999864985378868788889980899288790868
No 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.95 E-value=0.038 Score=29.49 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=32.7
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCC
Q ss_conf 66677760421346677897156500344337732168986089----98802675
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCM 76 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 76 (81)
...+....|.||.+ .++.+..-.|...||..|+..-+.... .||.|+..
T Consensus 20 ~~dd~~~~C~~C~~---~g~ll~Cd~C~~~~H~~C~~~~~~~~p~~~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCCCCCCCCCC---CCEEEECCCCCHHHHHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf 86999888761699---896888599880240655498857589989899799087
No 64
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 1mm3_A
Probab=91.61 E-value=0.05 Score=28.89 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCCCC
Q ss_conf 677760421346677897156500344337732168986089----9880267588
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCMFP 78 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~~p 78 (81)
...+..|.||.+ .++.+.--.|...||..|+...+.... .||.|+....
T Consensus 6 d~~~d~C~~C~~---~g~li~Cd~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCCCCCCCCC---CCEEEECCCCCHHHCCHHCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 788779978899---79587889989345405459984748998889979838557
No 65
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.27 E-value=0.078 Score=27.91 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=32.5
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC-----CCCCCCCCC
Q ss_conf 6042134667789715650034433773216898608-----998802675
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS-----GTCPVCRCM 76 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 76 (81)
..|.||....+.+..+.--.|...||..|+..-+... =.||.||.+
T Consensus 27 c~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~~~~~~~~~~~~W~C~~C~~e 77 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCC
T ss_conf 588668996899827775998964451307982212999981799188592
No 66
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.26 E-value=0.034 Score=29.71 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCC
Q ss_conf 0421346677897156500344337732168986089----98802675
Q T0539 32 CCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCM 76 (81)
Q Consensus 32 ~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 76 (81)
.|.||...-+.+..+.--.|...||..|+..-+.... .||.||..
T Consensus 2 ~C~vC~~~~~~~~~l~Cd~C~~~~H~~C~~~~~~~~p~~~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf 9968689899998888599995568604599856689988899389080
No 67
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.49 E-value=0.073 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=25.8
Q ss_pred CCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 666777604213466778971565003443377321689
Q T0539 25 GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW 63 (81)
Q Consensus 25 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~W 63 (81)
..+..+..|.|| +-++..+..-.--|+.+||..|+++-
T Consensus 10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCCCCCEECCEEECCHHHHHHHHHH
T ss_conf 588867623656-74334540232133411247889885
No 68
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, cytoplasm, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.47 E-value=0.12 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC---C--CCCCCCCCCC
Q ss_conf 76042134667789715650034433773216898608---9--9880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS---G--TCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~---~--~CP~CR~~~p 78 (81)
.+.|+|-+..+.. .++...|.|..|.+. ..||+.+ + .||+|.+.+.
T Consensus 249 sL~CPls~~ri~~--P~R~~~C~H~qCFD~-~~~l~~~~~~~~W~CPiC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EEECCCCCCCCCC--CCCCCCCCCCCEECH-HHHHHHHHHCCCEECCCCCCCCC
T ss_conf 7548775470005--620354677500479-99999996589719988999778
No 69
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.36 E-value=0.052 Score=28.80 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=34.5
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCC
Q ss_conf 77760421346677897156500344337732168986089----9880267
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRC 75 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 75 (81)
.....|.||.+.-+.++.+.-..|+..||..||..++.... .||-|+.
T Consensus 5 ~~~~~C~~C~~~~~~~~ll~C~~C~~~yH~~Cl~~~~~~~~~~~w~C~~C~~ 56 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCEECCCCCC
T ss_conf 9899667279988846565999998033557738520146789847455766
No 70
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.22 E-value=0.027 Score=30.24 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=30.3
Q ss_pred CCCCCCEECCCCCCC--CEEEECCCCCCCCCCCHHHHHH-----C---CCCCCCCCCC
Q ss_conf 776042134667789--7156500344337732168986-----0---8998802675
Q T0539 29 QEMCCPICCSEYVKG--EVATELPCHHYFHKPCVSIWLQ-----K---SGTCPVCRCM 76 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~--~~~~~l~C~H~Fh~~Ci~~Wl~-----~---~~~CP~CR~~ 76 (81)
....|.||....... ..+..-.|...||..|+...+. . .=.|+.|+.+
T Consensus 15 ~~~~C~vC~~~~~~~~~~lv~Cd~C~~~~H~~Cl~p~~~~~~~~~~~~~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 8499568999767899978889999874871206982212434457873799303460
No 71
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.93 E-value=0.079 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCC
Q ss_conf 77760421346677897156500344337732168986089----9880267
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRC 75 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 75 (81)
.++..|.||...-+.+..+.-..|...||..|+..-+.... .||.|..
T Consensus 14 ~~~~vC~iC~~~~~~~~lv~Cd~C~~~yH~~C~~p~~~~~p~~~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 6487856889968998878828999756402068887878897889901509
No 72
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.07 E-value=0.081 Score=27.82 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=32.0
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCCC
Q ss_conf 77760421346677897156500344337732168986089----988026758
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCMF 77 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~~ 77 (81)
..+..|.||.. .++.+.--.|...||..|+..-+.... .||.|+...
T Consensus 6 ~nde~C~~C~~---~g~lv~Cd~C~~~yH~~Cl~~~~~~~p~~~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRD---GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCCCCC---CCEEEECCCCCHHHCHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf 06672778999---9978789998937785537987575899899995582823
No 73
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.44 E-value=0.088 Score=27.64 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=29.6
Q ss_pred CCCCCCEECCCCCCCCEEEEC---CCCCCCCCCCHHH----HHH-----CCCCCCCCCCCC
Q ss_conf 776042134667789715650---0344337732168----986-----089988026758
Q T0539 29 QEMCCPICCSEYVKGEVATEL---PCHHYFHKPCVSI----WLQ-----KSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l---~C~H~Fh~~Ci~~----Wl~-----~~~~CP~CR~~~ 77 (81)
+...| ||-.....+. ++.. .|..-||..|+-- ... ..-.||.|+.+-
T Consensus 15 ~~~~C-iC~~~~~~~~-mI~Cd~~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEE-ECCCCCCCCC-EEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 96081-6899548888-88877898985866010276632222567899999896885968
No 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3.1; zinc-finger, histone binding, acetylation, chromosomal protein, DNA damage, DNA repair; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=85.36 E-value=0.42 Score=24.24 Aligned_cols=44 Identities=27% Similarity=0.657 Sum_probs=29.2
Q ss_pred CCCCCCEECCCCCCCCEEEEC---CCCCCCCCCCHHHHHH--------C-C-CCCCCCCCC
Q ss_conf 776042134667789715650---0344337732168986--------0-8-998802675
Q T0539 29 QEMCCPICCSEYVKGEVATEL---PCHHYFHKPCVSIWLQ--------K-S-GTCPVCRCM 76 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l---~C~H~Fh~~Ci~~Wl~--------~-~-~~CP~CR~~ 76 (81)
.+..|.+|.+ +..++.- .|...||..||..-+. . . =.||+|...
T Consensus 78 ~~~~C~~C~~----gg~lllCD~~~C~~~fH~~Cl~~~lg~~~~~~~~~~~~W~C~~C~~~ 134 (159)
T 3a1b_A 78 YQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCCCCCC----CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCEECCCCCCC
T ss_conf 8874778899----89644407999977553865678668002025677877256479985
No 75
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.84 E-value=0.26 Score=25.32 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=31.1
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHH----H-----HHCCCCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168----9-----86089988026758
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSI----W-----LQKSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~----W-----l~~~~~CP~CR~~~ 77 (81)
+...| ||....+.+..+.--.|...||..|+.- . ....-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCCCCCCCEEEECCCCCCCCHHHCCCCHHCCCCCCCCCCCEECCCCCCCC
T ss_conf 81887-8979229987888099895787401687700001047899808997982858
No 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.64 E-value=0.2 Score=25.84 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=32.8
Q ss_pred CCCCCEECCCCCCCCE--EEECCCCCCCCCCCHHHHHHC-CCCCCCCCCCCC
Q ss_conf 7604213466778971--565003443377321689860-899880267588
Q T0539 30 EMCCPICCSEYVKGEV--ATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~--~~~l~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~~p 78 (81)
+.-|+-|...-..+-. +..--|||..|..|++-.+-+ .++||-|-..+-
T Consensus 3 dqgcprckttkyrnpslklmvnvcghtlcescvdllfvrgagncpecgtplr 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCCCCCC
T ss_conf 7678865422336844424566523178888788742104788976788232
No 77
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.02 E-value=0.42 Score=24.24 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=31.4
Q ss_pred CCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHH--C---CCCCCCCCCCCCC
Q ss_conf 77604213466778971-56500344337732168986--0---8998802675888
Q T0539 29 QEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQ--K---SGTCPVCRCMFPP 79 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~--~---~~~CP~CR~~~p~ 79 (81)
...-| ||...++.+.. +..-.|.--||..|+.--.. . +-.||.||...-|
T Consensus 11 ~pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~~C~~C~~~~~p 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCEEE-ECCCCCCCCCCEEECCCCCCEEECCCCCCCHHCCCCCCEEECCCCCCCCCC
T ss_conf 88783-898955999848875899984717553743331788986889778487687
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.86 E-value=0.12 Score=26.94 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=32.7
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC----CCCCCCCCCCC
Q ss_conf 6042134667789715650034433773216898608----99880267588
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFP 78 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~~p 78 (81)
..|.+|....+.+..+.--.|...||..|+..-.... -.||.|+.+..
T Consensus 19 ~~C~~C~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred EEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 7959999816998777889998136636579581438998889968889565
No 79
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=82.33 E-value=1.7 Score=21.20 Aligned_cols=41 Identities=15% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 66666777604213466778971565003443377321689
Q T0539 23 DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW 63 (81)
Q Consensus 23 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~W 63 (81)
......++..|-+|..+-.....-..+.|.-.||..|+..|
T Consensus 23 ~~~~~~~~V~Cd~C~~~~~~~AvksCl~C~~syC~~cl~~~ 63 (78)
T 2ffw_A 23 NTMTSAEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 63 (78)
T ss_dssp CCCSSSCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEHHHHCHHHHHHHHHHH
T ss_conf 66678875188635998852212284450768879872875
No 80
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.11 E-value=0.4 Score=24.37 Aligned_cols=44 Identities=25% Similarity=0.578 Sum_probs=30.3
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCC----CCCCCCCCCC
Q ss_conf 6042134667789715650034433773216898608----9988026758
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMF 77 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~~ 77 (81)
..|.+|.. .|+.+..-.|.-.||..|+..-+..- -.||.|+...
T Consensus 3 ~~C~~C~~---~g~l~~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCC---CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCCCCCC---CCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97257799---9978777999852445229987565898885682567654
No 81
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, alternative splicing, bromodomain, chromatin regulator, coiled coil, cytoplasm; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 2fui_A 2fuu_A*
Probab=81.10 E-value=0.09 Score=27.59 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=30.1
Q ss_pred CCCCCCEECCCCCCCCEEE-ECCCCCCCCCCCHHH--HHHC---CCCCCCCCCC
Q ss_conf 7760421346677897156-500344337732168--9860---8998802675
Q T0539 29 QEMCCPICCSEYVKGEVAT-ELPCHHYFHKPCVSI--WLQK---SGTCPVCRCM 76 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~-~l~C~H~Fh~~Ci~~--Wl~~---~~~CP~CR~~ 76 (81)
+..-| ||....+.++..+ .-.|+..||..|+.- .... .-.||.|+.+
T Consensus 7 ~~~yC-iC~~~~d~~~~mi~Cd~C~~~fH~~C~~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCEEE-ECCCCCCCCCCEEECCCCCCEECCCCCCCCHHHCCCCCEECCCCCCCC
T ss_conf 98076-678967999766779999982467588978223156650427534420
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.40 E-value=0.15 Score=26.47 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=31.4
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089----988026758
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~~ 77 (81)
.+..|.||.+ .++.+.--.|...||..|+..=+.... .||.|+...
T Consensus 4 ~dd~C~~C~~---~g~li~Cd~C~~~yH~~Cl~p~~~~~p~~~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCCCCC---CCEEEECCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf 0866578899---8937777994955414128696262889898995464742
No 83
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.36 E-value=0.91 Score=22.59 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=26.8
Q ss_pred CCCCEECCCCCCCCEEEECC---CCCCCCCCCHHHHHHCC----CCCCCCCCCCCC
Q ss_conf 60421346677897156500---34433773216898608----998802675888
Q T0539 31 MCCPICCSEYVKGEVATELP---CHHYFHKPCVSIWLQKS----GTCPVCRCMFPP 79 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~---C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~~p~ 79 (81)
.-| ||...... +.+..-. |..-||..|+- |... -.||.||++.-+
T Consensus 37 ~~C-~C~~~~~~-~mi~Cd~c~~c~~WfH~~Cvg--i~~~p~~~w~Cp~C~~~~g~ 88 (91)
T 1weu_A 37 TYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp BCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CEE-ECCCCCCC-CEEEEECCCCCCCCEECCCCC--CCCCCCCCEECCCCCCCCCC
T ss_conf 876-89797899-888875989976488377337--67589983899558082487
No 84
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X
Probab=78.58 E-value=0.2 Score=25.86 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6042134667789715650034433773216898608998802675888
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 79 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~ 79 (81)
..|..|-..+..........-+..||..|..+++..+..|..|.+.+++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~iyC~~Cy~~~~~~~~~C~~Cg~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8876999954689854687378057812534432344211443970744
No 85
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=77.19 E-value=0.36 Score=24.62 Aligned_cols=42 Identities=33% Similarity=0.558 Sum_probs=25.4
Q ss_pred CCCCEECCCCCCCCEEEECC---CCCCCCCCCHHHHHHCC----CCCCCCCCC
Q ss_conf 60421346677897156500---34433773216898608----998802675
Q T0539 31 MCCPICCSEYVKGEVATELP---CHHYFHKPCVSIWLQKS----GTCPVCRCM 76 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~---C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 76 (81)
.-| ||-... .++.+..-. |..-||..|+. |... =.||.||.+
T Consensus 12 ~~C-~C~~~~-~~~mi~Cd~~~cc~~WfH~~Cvg--l~~~p~~~w~C~~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CEE-ECCCCC-CCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCC
T ss_conf 786-879978-89999872899998689588689--88158984899677577
No 86
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.94 E-value=1.6 Score=21.30 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 776042134667789715650034433773216
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVS 61 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~ 61 (81)
....|..|-+.+..++.+..+ ++.||.+|+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~~~--~~~~H~~CF~ 44 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVN--GHFFHRSCFR 44 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBT--TBCCBTTTCB
T ss_pred CCCCCCCCCCCCCCCEEEEEC--CCEECCCCCE
T ss_conf 889884779881751289999--8587457786
No 87
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.10 E-value=0.44 Score=24.15 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCCCEECCCCCCCCEEE-ECCCCCCCCCCCHHHHHH----CCCCCCCCCCCCCC
Q ss_conf 760421346677897156-500344337732168986----08998802675888
Q T0539 30 EMCCPICCSEYVKGEVAT-ELPCHHYFHKPCVSIWLQ----KSGTCPVCRCMFPP 79 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~-~l~C~H~Fh~~Ci~~Wl~----~~~~CP~CR~~~p~ 79 (81)
...| ||-..++.++.++ --.|.--||..|+..-.. ..-.||.|+..-.|
T Consensus 16 ~~~C-~C~~~~~~~~~~i~Cd~C~~w~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred EEEE-ECCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 4872-78995489996988399998595410697634679973999287180986
No 88
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.86 E-value=0.73 Score=23.07 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=30.9
Q ss_pred CCCCCCCEECCCCCCCCEEEEC--CCCCCCCCCCHH---HHH---HCC----CCCCCCCC
Q ss_conf 7776042134667789715650--034433773216---898---608----99880267
Q T0539 28 GQEMCCPICCSEYVKGEVATEL--PCHHYFHKPCVS---IWL---QKS----GTCPVCRC 75 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~Fh~~Ci~---~Wl---~~~----~~CP~CR~ 75 (81)
+....|.||...+..++..+.- .|...||..|+. .-+ ... =.||.|++
T Consensus 6 ~~~~~C~~C~~~~~~~~~~i~C~~~C~~w~H~~C~gl~~~~~~~~~~~~~~~w~C~~C~a 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCC
T ss_conf 872088678896789989888689999859965668582344201368997078937889
No 89
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.17 E-value=2.1 Score=20.76 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=30.3
Q ss_pred CCCCCCCEECCCCCC--CCEEEECCCCCCCCCCCHHHHHHCCC--CCCCCCCC
Q ss_conf 777604213466778--97156500344337732168986089--98802675
Q T0539 28 GQEMCCPICCSEYVK--GEVATELPCHHYFHKPCVSIWLQKSG--TCPVCRCM 76 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~--~~~~~~l~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~ 76 (81)
..+..|..|...|.. ........|++.||.+|-.. ...+ .|-+|-..
T Consensus 23 ~~~~~C~~C~~~F~~l~~rk~~C~~Cg~~vC~~Cs~~--~~~~~w~C~~Cs~~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ--ESNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE--CSTTCEEEHHHHSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCC
T ss_conf 5898380119600484779885255988068465796--89989889899896
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.73 E-value=1.6 Score=21.36 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCCCCEECCCCCCCCEE-EECCCCCCCCCCCHHHHHHC------CCCCCCCCCCC
Q ss_conf 776042134667789715-65003443377321689860------89988026758
Q T0539 29 QEMCCPICCSEYVKGEVA-TELPCHHYFHKPCVSIWLQK------SGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~-~~l~C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~~ 77 (81)
+...|.+|...|.....- ..-.||++||..|...++.. ...|..|-..+
T Consensus 68 ~~~~C~~C~~~F~~~~r~hhCr~CG~~~C~~Cs~~~~~~~~~~~~~rvC~~C~~~l 123 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDL 123 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCCCEEECCCCCCEEEECHHHHHHC
T ss_conf 99989370935660377856422796059553688143379998436577888660
No 91
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=70.68 E-value=0.65 Score=23.32 Aligned_cols=43 Identities=28% Similarity=0.515 Sum_probs=25.5
Q ss_pred CCCCCEECCCCCCCCEEEECC---CCCCCCCCCHHHHHHCCC----CCCCCCCC
Q ss_conf 760421346677897156500---344337732168986089----98802675
Q T0539 30 EMCCPICCSEYVKGEVATELP---CHHYFHKPCVSIWLQKSG----TCPVCRCM 76 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~---C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 76 (81)
..-| ||.... .++.+..-. |..-||..|+. |.... .||.|+++
T Consensus 9 ~~~C-iC~~~~-~~~mi~Cd~cdcc~~W~H~~Cvg--l~~~p~~~w~C~~C~~~ 58 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCEE-EECCCC-CCCEEEEECCCCCCCCEECCCCC--CCCCCCCCEECCCCCCC
T ss_conf 7377-819978-89878875989988588096889--88379983999276586
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=69.98 E-value=0.57 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.616 Sum_probs=24.0
Q ss_pred CCCCCEECCCCC--CCCEEEEC-CCCCCCCCCCHHHHHHCC
Q ss_conf 760421346677--89715650-034433773216898608
Q T0539 30 EMCCPICCSEYV--KGEVATEL-PCHHYFHKPCVSIWLQKS 67 (81)
Q Consensus 30 ~~~C~ICl~~~~--~~~~~~~l-~C~H~Fh~~Ci~~Wl~~~ 67 (81)
-.-|+=|--.+. .+...+.- .|++.||..|-..|-..+
T Consensus 25 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~w~~~H 65 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred CEECCCCCCEEEECCCCCEEECCCCCCEECCCCCCHHHCCC
T ss_conf 64899999758977999977899989835304398233189
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.14 E-value=1.9 Score=20.98 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=29.1
Q ss_pred CCCCCCCEECCCCCCC-C-EEEECCCCCCCCCCCHHHHHH-----CC--CCCCCCC
Q ss_conf 7776042134667789-7-156500344337732168986-----08--9988026
Q T0539 28 GQEMCCPICCSEYVKG-E-VATELPCHHYFHKPCVSIWLQ-----KS--GTCPVCR 74 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~-~-~~~~l~C~H~Fh~~Ci~~Wl~-----~~--~~CP~CR 74 (81)
..+..|.||......+ + .+.--.|...||..|+...+. .. =.||.|-
T Consensus 4 g~~~vC~vC~~~~~~~~~~li~Cd~C~~~~H~~C~~~~~~~~~~~~~~~W~C~~C~ 59 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 98380758899877899818884999970030016987543355899667995776
No 94
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.69 E-value=2.7 Score=20.26 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=26.0
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089988026758
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
....|.-|-+.+..++.+.. -++.||.+|+ +|=.|.+.|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~~--~g~~~H~~CF--------~C~~C~~~L 52 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLA--NQQVFHISCF--------RCSYCNNKL 52 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEEC--SSSEEETTTC--------BCTTTCCBC
T ss_pred CCCCCCCCCCEECCCEEEEE--CCCEECCCCC--------CCCCCCCCC
T ss_conf 89733228986076337998--9855553887--------731559965
No 95
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.42 E-value=3.7 Score=19.54 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=28.3
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 77604213466778971565003443377321689860899880267588
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
....|.-|-..+..++.++. -+..||.+|+ .|-.|...|.
T Consensus 8 ~~~~C~~C~~~I~~~e~v~~--~g~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS--LGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE--TTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCCCCCCCEECCCEEEEE--CCCEECCCCC--------CCCCCCCCCC
T ss_conf 48513036978055158998--8846450749--------1055899568
No 96
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=68.23 E-value=0.95 Score=22.49 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCCEECCCCCCCCEEEECC---C-CCCCCCCCHHHHHHCC----CCCCCCCCC
Q ss_conf 60421346677897156500---3-4433773216898608----998802675
Q T0539 31 MCCPICCSEYVKGEVATELP---C-HHYFHKPCVSIWLQKS----GTCPVCRCM 76 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~---C-~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 76 (81)
..+-||-... +++ ++... | .--||..|+. |... =.||.|+..
T Consensus 26 ~~yC~C~~~~-~~~-mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 75 (90)
T 2jmi_A 26 EVYCFCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCSTTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCEEECCCCC-CCC-EEEECCCCCCCCCEECCCCC--CCCCCCCCEECHHHHHH
T ss_conf 7273418987-898-88778999999889487889--98489855899388876
No 97
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.66 E-value=0.56 Score=23.64 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=32.7
Q ss_pred CCCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 777604213466778971-56500344337732168986089988026
Q T0539 28 GQEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQKSGTCPVCR 74 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR 74 (81)
..+..|..|...|..-.. -..-.||..||..|..........|-.|.
T Consensus 17 ~~~~~C~~C~~~F~~~~Rkh~Cr~Cg~~~C~~Cs~~~~~~~r~C~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCH
T ss_conf 136997255951007535331057899871202277888895176123
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.69 E-value=3.9 Score=19.42 Aligned_cols=45 Identities=29% Similarity=0.546 Sum_probs=27.3
Q ss_pred CCCCEECCCCCCCCEEEECC---CCCCCCCCCHHHHHHCC----CCCCCCCCCCCC
Q ss_conf 60421346677897156500---34433773216898608----998802675888
Q T0539 31 MCCPICCSEYVKGEVATELP---CHHYFHKPCVSIWLQKS----GTCPVCRCMFPP 79 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~---C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~~p~ 79 (81)
..| ||-.... ++.+.... |...||..|+- |... =.||.||.+.=|
T Consensus 17 ~~C-vC~~~~~-~~~~~c~~c~~C~~w~H~~Cvg--l~~~p~~~w~C~~C~~~~gp 68 (71)
T 1wen_A 17 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp CCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CEE-ECCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCC
T ss_conf 884-6589758-9846785789998699978778--87589986899678183687
No 99
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding; HET: M3L; 1.78A {Homo sapiens}
Probab=65.91 E-value=0.9 Score=22.61 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=31.3
Q ss_pred CCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHH-----CCCCCCCCCCCC
Q ss_conf 77604213466778971-56500344337732168986-----089988026758
Q T0539 29 QEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQ-----KSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~~ 77 (81)
....| ||...++.++. +.--.|..-||..|+.--.. ..-.||.|+.+-
T Consensus 9 ~~v~C-~C~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCEEE-ECCCCCCCCCCEEECCCCCCCCCHHCCCCCHHHCCCCCEEECCCCCCCC
T ss_conf 98785-7789559998688759999469222069564657899848997884988
No 100
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.90 E-value=3.9 Score=19.41 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7604213466778971565003443377321689860899880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...|..|.+.+..++.+ +.-.++.||.+|+ +|=.|.+.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~-v~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCCCCCCCCEECCCCEE-EEECCCEECCCCC--------CCCCCCCCCC
T ss_conf 78881579991469289-9989726768898--------1568899979
No 101
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=65.86 E-value=3 Score=19.98 Aligned_cols=43 Identities=30% Similarity=0.665 Sum_probs=27.5
Q ss_pred CCCCCEECCCCCCCCEEEEC---CCCCCCCCCCHHHHHHC---------CC-CCCCCCCC
Q ss_conf 76042134667789715650---03443377321689860---------89-98802675
Q T0539 30 EMCCPICCSEYVKGEVATEL---PCHHYFHKPCVSIWLQK---------SG-TCPVCRCM 76 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l---~C~H~Fh~~Ci~~Wl~~---------~~-~CP~CR~~ 76 (81)
+..|.+|.+ +..+..- .|...||..||..-+.. .+ .|.+|..+
T Consensus 93 ~~~C~~C~~----g~~L~~Cd~~~C~r~fC~~Ci~~~~g~~~~~~i~~~~~W~C~~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCCEECC----CCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCC
T ss_conf 143612269----98587548877770765888872268878864026898155361687
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.47 E-value=3.5 Score=19.65 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=26.4
Q ss_pred CCCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHH
Q ss_conf 777604213466778971-5650034433773216898
Q T0539 28 GQEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWL 64 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl 64 (81)
.+...|.+|...|..-.. ...-.||++||..|.....
T Consensus 159 ~~~~~C~~C~~~F~~~~rkhhCr~Cg~~~C~~C~~~~~ 196 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 78897767898224766670776147885378749951
No 103
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.32 E-value=0.81 Score=22.85 Aligned_cols=47 Identities=30% Similarity=0.591 Sum_probs=28.2
Q ss_pred CCCCCCCCEECCCCCCCCEEEECCCC---CCCCCCCHHHHHHCC----CCCCCCCCCC
Q ss_conf 67776042134667789715650034---433773216898608----9988026758
Q T0539 27 VGQEMCCPICCSEYVKGEVATELPCH---HYFHKPCVSIWLQKS----GTCPVCRCMF 77 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~~~~~~~l~C~---H~Fh~~Ci~~Wl~~~----~~CP~CR~~~ 77 (81)
..++.-| ||-...+ ++.+..-.|. .-||..|+. |... =.||.|+...
T Consensus 3 ~~~~~yC-iC~~~~~-~~mi~Cd~c~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCCCCEE-ECCCCCC-CCEEEEECCCCCCCCEECCCCC--CCCCCCCCEECCCCCCCC
T ss_conf 8898285-8589789-9988875058998779496859--895799548998885762
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.74 E-value=1.4 Score=21.62 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 776042134667789715650034433773216898608998802
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVC 73 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~C 73 (81)
....|.=|...+.+...-....|++.||.+|=.=.-+.-.+||-|
T Consensus 14 ~~~~C~gC~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC 58 (59)
T 1z60_A 14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 988845878817998626996789851464564565330279887
No 105
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=63.35 E-value=3.8 Score=19.48 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCCCCCCCCEECCCCCCCCEE-EECCCCCCCCCCCHHHHHHC-------CCCCCCCC
Q ss_conf 667776042134667789715-65003443377321689860-------89988026
Q T0539 26 AVGQEMCCPICCSEYVKGEVA-TELPCHHYFHKPCVSIWLQK-------SGTCPVCR 74 (81)
Q Consensus 26 ~~~~~~~C~ICl~~~~~~~~~-~~l~C~H~Fh~~Ci~~Wl~~-------~~~CP~CR 74 (81)
....+..|.+|...|..-..- ..-.||.+||..|....+.. ...|-.|-
T Consensus 5 ~~~~~s~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~p~~~~~~~RVC~~C~ 61 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHH
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCEECCCCCCCCCEECHHHH
T ss_conf 663568183559512474546264303902075772994606877997686888999
No 106
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.78 E-value=3.6 Score=19.59 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=30.3
Q ss_pred CCCCCCCCEECCCCCC--CCEEEECCCCCCCCCCCHHHHHHCCC----CCCCCCC
Q ss_conf 6777604213466778--97156500344337732168986089----9880267
Q T0539 27 VGQEMCCPICCSEYVK--GEVATELPCHHYFHKPCVSIWLQKSG----TCPVCRC 75 (81)
Q Consensus 27 ~~~~~~C~ICl~~~~~--~~~~~~l~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 75 (81)
..+...|.+|...|.. ........|++.||..|-..-...++ .|-+|..
T Consensus 52 ~~~~~~C~~C~~~f~~l~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~w~C~~C~~ 106 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEECHHHHH
T ss_conf 4249969558910028899999986889330189988757899998688766773
No 107
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=61.93 E-value=0.87 Score=22.69 Aligned_cols=40 Identities=23% Similarity=0.609 Sum_probs=25.0
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
+..||.|..+++-.. ++.+|..|-.. ++....||-|.++|
T Consensus 2 ~~~CP~Cq~~L~~~~-------~~~hC~~C~~~-f~~~a~CPdC~~~L 41 (81)
T 2jrp_A 2 EITCPVCHHALERNG-------DTAHCETCAKD-FSLQALCPDCRQPL 41 (81)
T ss_dssp CCCCSSSCSCCEECS-------SEEECTTTCCE-EEEEEECSSSCSCC
T ss_pred CCCCCCCCCEEEECC-------CCEEHHHHHHH-HHEEEECCCCCCHH
T ss_conf 887998779625569-------97350676544-54077687633389
No 108
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.03 E-value=1.2 Score=21.91 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=25.8
Q ss_pred CCCCCEECCCCCCCCEEEECC---CCCCCCCCCHHHHHHCC----CCCCCCCCC
Q ss_conf 760421346677897156500---34433773216898608----998802675
Q T0539 30 EMCCPICCSEYVKGEVATELP---CHHYFHKPCVSIWLQKS----GTCPVCRCM 76 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~---C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 76 (81)
+.-| ||..... ++.+.... |..-||..|+- |... =.||.|+++
T Consensus 10 ~~~C-~C~~~~~-~~~i~c~~cd~C~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 59 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCEE-ECCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCC
T ss_conf 8886-8899789-9988883899999498894899--88069983899153467
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.03 E-value=1.5 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCCCEECCCCCCCCEE-EECCCCCCCCCCCHHHHHH
Q ss_conf 6042134667789715-6500344337732168986
Q T0539 31 MCCPICCSEYVKGEVA-TELPCHHYFHKPCVSIWLQ 65 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~-~~l~C~H~Fh~~Ci~~Wl~ 65 (81)
..|.+|...|.....- .--.||++||..|...++.
T Consensus 12 ~~C~~C~~~F~~~~rkhhCr~CG~~~C~~Cs~~~~~ 47 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIP 47 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCEECCCCCCCEEE
T ss_conf 512378983678631023566798873770478166
No 110
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.82 E-value=4.7 Score=19.04 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHH
Q ss_conf 777604213466778971-56500344337732168986
Q T0539 28 GQEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQ 65 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~ 65 (81)
.+...|.+|.-.|..-.. -.--.||++||.+|...++.
T Consensus 19 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~ 57 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAA 57 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEE
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCEECCHHCCCEEE
T ss_conf 658807688994057545142566897859125099576
No 111
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.72 E-value=0.55 Score=23.68 Aligned_cols=42 Identities=21% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 77760421346677897156500344337732168986089988026758
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
--+..|+.|..+++. ..+|.+|..|-... .....||-|.+++
T Consensus 30 ~M~~~CP~C~~eL~~-------~~g~~~C~~C~~~~-~~~AfCPeCg~pL 71 (101)
T 2jne_A 30 HMELHCPQCQHVLDQ-------DNGHARCRSCGEFI-EMKALCPDCHQPL 71 (101)
T ss_dssp -CCCBCSSSCSBEEE-------ETTEEEETTTCCEE-EEEEECTTTCSBC
T ss_pred CCCCCCCCCCCCCCC-------CCCCEECHHHCCCC-CCCCCCCCCCHHH
T ss_conf 101128678996464-------79888982221046-6751798856289
No 112
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.96 E-value=4.1 Score=19.33 Aligned_cols=36 Identities=17% Similarity=0.479 Sum_probs=24.2
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 60421346677897156500344337732168986089988026758
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
..|..|-+.+.. +.+.. -++.||.+|+ +|=.|+..|
T Consensus 16 ~~C~~C~~~I~~-~~v~~--~~~~~H~~CF--------~C~~C~~~L 51 (81)
T 1x6a_A 16 EFCHGCSLLMTG-PFMVA--GEFKYHPECF--------ACMSCKVII 51 (81)
T ss_dssp CBCTTTCCBCCS-CCBCC--TTCCBCTTSC--------BCTTTCCBC
T ss_pred CHHHHCCCCCCC-CEEEE--CCCEECCCCC--------EECCCCCCC
T ss_conf 131538991358-25851--8476764666--------517588988
No 113
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.17 E-value=6.5 Score=18.31 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089988026758
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
....|..|-..+.+ +.+. --++.||.+|+ +|=.|+..|
T Consensus 14 ~~~~C~~C~~~I~~-~~v~--~~g~~~H~~CF--------~C~~C~~~L 51 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPLI--FKNDPYHPDHF--------NCANCGKEL 51 (79)
T ss_dssp CCCBCTTTCCBCCS-CCCC--CSSSCCCTTTS--------BCSSSCCBC
T ss_pred CCCCCCCCCCEECC-CEEE--ECCCCCCCCCC--------EECCCCCCC
T ss_conf 88764378999469-6689--89545160998--------338999814
No 114
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.50 E-value=6.1 Score=18.47 Aligned_cols=37 Identities=24% Similarity=0.572 Sum_probs=28.9
Q ss_pred CCCCCEECCCCCCCCEEEECC--CCCCCCCCCHHHHHHCC
Q ss_conf 760421346677897156500--34433773216898608
Q T0539 30 EMCCPICCSEYVKGEVATELP--CHHYFHKPCVSIWLQKS 67 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~--C~H~Fh~~Ci~~Wl~~~ 67 (81)
...|.+|.|.+++..-+. .| =.|.||..|-+..++.+
T Consensus 15 ~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sik~q 53 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHH
T ss_pred CEEEEEEHHHHCCCCEEE-CCCCCCCCEECCCCHHHHHHC
T ss_conf 545510154623772565-788766702613468999842
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.88 E-value=5.8 Score=18.56 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=26.5
Q ss_pred CCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHH
Q ss_conf 77604213466778971-56500344337732168986
Q T0539 29 QEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQ 65 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~ 65 (81)
+...|.+|...|..... -.--.||++||..|....+.
T Consensus 18 ~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~~ 55 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELA 55 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCEE
T ss_conf 58959261971206544414653496607146189465
No 116
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.43 E-value=5.1 Score=18.86 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=30.5
Q ss_pred CCCCCCCEECCCCCC--CCEEEECCCCCCCCCCCHHHHHHCCC--CCCCCCC
Q ss_conf 777604213466778--97156500344337732168986089--9880267
Q T0539 28 GQEMCCPICCSEYVK--GEVATELPCHHYFHKPCVSIWLQKSG--TCPVCRC 75 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~--~~~~~~l~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~ 75 (81)
.++..|.+|...|.. +.....-.|++.||..|=. +....+ .|-+|..
T Consensus 66 ~~~~~C~~C~~~f~~l~~~~~~C~~C~~~vC~~C~~-~~~~~~~w~C~~C~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEECHHHHH
T ss_conf 777646133785345457888434686400200336-678898778674598
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.85 E-value=9.4 Score=17.52 Aligned_cols=49 Identities=20% Similarity=0.542 Sum_probs=33.9
Q ss_pred CCCCCCEECCCCCC---CCEEEE-CCCCCCCCCCCHHHHHHC-CCCCCCCCCCC
Q ss_conf 77604213466778---971565-003443377321689860-89988026758
Q T0539 29 QEMCCPICCSEYVK---GEVATE-LPCHHYFHKPCVSIWLQK-SGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~---~~~~~~-l~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~~ 77 (81)
....|-||-+++.. ++..+. -.|+--.|..|..-=++. +..||.|+...
T Consensus 15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktry 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
T ss_conf 553100154633527899888875236986450789999851670275448714
No 118
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.70 E-value=2.8 Score=20.18 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCCCEECCCCCCCCE-EEECCCCCCCCCCCHHHHHH
Q ss_conf 77604213466778971-56500344337732168986
Q T0539 29 QEMCCPICCSEYVKGEV-ATELPCHHYFHKPCVSIWLQ 65 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~-~~~l~C~H~Fh~~Ci~~Wl~ 65 (81)
+...|.+|...|..-.. ..---||++||.+|...++.
T Consensus 13 ~~~~C~~C~k~F~~~~rrhhCr~CG~v~C~~C~~~~~~ 50 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEEC
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCCCEEE
T ss_conf 73967486991007745574546799628360688685
No 119
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=51.80 E-value=12 Score=17.07 Aligned_cols=38 Identities=16% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
...|..|-..+.++..+. --|..||.+|+ .|-.|+..|
T Consensus 60 ~~~C~~C~~~I~~~~~~~--a~g~~~H~~CF--------~C~~C~~~l 97 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILK--ALDRHWHSKCL--------KCSDCHVPL 97 (182)
T ss_dssp CCBCBTSSSBCCCSEEEE--ETTEEECSSTT--------SCTTTCCCC
T ss_pred CCCCCCCCCCCCCCEEEE--ECCCCCCCCCC--------EECCCCCCC
T ss_conf 960624799638858899--89987162559--------637998836
No 120
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=49.50 E-value=6.9 Score=18.19 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=26.8
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7604213466778971565003443377321689860899880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...|+-|-..+..++.+.. -+..||.+|+ .|..|+..|-
T Consensus 115 ~~~C~~C~~~I~~~~~v~a--~g~~wH~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG--AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE--TTEEECTTTC--------BCTTTCCBCC
T ss_pred CCCCCCCCCEECCEEEEEE--CCCCCCCCCC--------CCCCCCCCCC
T ss_conf 9878999878253148985--6844378798--------1387698979
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.11 E-value=3.1 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.6
Q ss_pred CCCCCCCHHHHHHC
Q ss_conf 43377321689860
Q T0539 53 HYFHKPCVSIWLQK 66 (81)
Q Consensus 53 H~Fh~~Ci~~Wl~~ 66 (81)
-.||..||.+|...
T Consensus 41 aGFCRNCLskWy~~ 54 (105)
T 2o35_A 41 AGFCRNCLSNWYRE 54 (105)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 87879889999999
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocarbon-degrading, structural genomics, PSI-2, protein structure initiative; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.50 E-value=3.2 Score=19.84 Aligned_cols=14 Identities=29% Similarity=0.823 Sum_probs=11.6
Q ss_pred CCCCCCCHHHHHHC
Q ss_conf 43377321689860
Q T0539 53 HYFHKPCVSIWLQK 66 (81)
Q Consensus 53 H~Fh~~Ci~~Wl~~ 66 (81)
-.||..||.+|...
T Consensus 40 AGFCRNCLskWy~~ 53 (104)
T 3fyb_A 40 ADFCRNCLAKWLME 53 (104)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 87879889899999
No 123
>2jm1_A Transcriptional regulator ATRX; ADD domain, metal binding protein; NMR {Homo sapiens}
Probab=47.50 E-value=10 Score=17.39 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=28.8
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHC---------C--CCCCCCCCC
Q ss_conf 7604213466778971565003443377321689860---------8--998802675
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQK---------S--GTCPVCRCM 76 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~---------~--~~CP~CR~~ 76 (81)
+..|.+|-+ .++.+.--.|...||..||..-+.. . =.||.|...
T Consensus 62 ~~~C~~C~~---~~~l~~Cd~C~~~fH~~Cl~~~~~~~~l~~~~~~~~~W~C~~C~p~ 116 (141)
T 2jm1_A 62 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 116 (141)
T ss_dssp CCSCSSSCC---CSSEEECSSSSCEEEHHHHHHHHCSHHHHHHTSSSSCCCCTTTCSS
T ss_pred CCCCCCCCC---CCCEEECCCCCHHHCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCH
T ss_conf 896898799---9978789999942341118987776202213689988799899854
No 124
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.77 E-value=14 Score=16.65 Aligned_cols=38 Identities=21% Similarity=0.569 Sum_probs=24.8
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
...|+-|-+.+.+++.+. --+..||.+|+. |=.|++.|
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~g~~wH~~CF~--------C~~C~~~L 52 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSCFK--------CQTCSVIL 52 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTTCB--------CSSSCCBC
T ss_pred CCCCCCCCCCCCCCEEEE--ECCCCCCCCCCC--------CCCCCCCC
T ss_conf 783306789808875799--799986877687--------06898956
No 125
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=46.36 E-value=7.3 Score=18.08 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.7
Q ss_pred CCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 04213466778971565003443377321
Q T0539 32 CCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 32 ~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
.|..|-..+..++.+.. =++.||.+|+
T Consensus 9 ~C~~C~k~I~~~~~v~~--~g~~~H~~CF 35 (81)
T 1a7i_A 9 KCGACGRTVYHAEEVQC--DGRSFHRCCF 35 (81)
T ss_dssp BCSSSCCBCSSTTEEEE--TTEEEESSSE
T ss_pred CHHHCCCEECCCEEEEE--CCCEECCCCC
T ss_conf 01347676156358998--8466460888
No 126
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.48 E-value=13 Score=16.86 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.6
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 7604213466778971565003443377321
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
...|..|-+.++. ..+ .--++.||.+|+
T Consensus 15 ~p~C~~C~~~I~~-~~v--~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--KLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--ECSSCEECTTTT
T ss_pred CCCHHCCCCEEEC-EEE--EECCCCCCHHHC
T ss_conf 9111318995017-089--999934185138
No 127
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.52 E-value=8.5 Score=17.73 Aligned_cols=37 Identities=19% Similarity=0.532 Sum_probs=23.1
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 604213466778971565003443377321689860899880267588
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
..|..|-..+..+ .+ .--+..||.+|+ +|=.|++.|.
T Consensus 16 ~~C~~C~~~I~~~-~v--~a~g~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--TYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CE--ESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCCCCCCCCC-EE--EECCCEECCCCC--------CCCCCCCCCC
T ss_conf 7064689990672-78--999822650125--------8657798879
No 128
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=42.03 E-value=2.3 Score=20.61 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCHHHHH
Q ss_conf 0034433773216898
Q T0539 49 LPCHHYFHKPCVSIWL 64 (81)
Q Consensus 49 l~C~H~Fh~~Ci~~Wl 64 (81)
..|+|.||..|-..|=
T Consensus 54 ~~C~~~FC~~C~~~~H 69 (80)
T 2jmo_A 54 LGCGFAFCRECKEAYH 69 (80)
T ss_dssp TCCSCCEETTTTEECC
T ss_pred CCCCCEECCCCCCCCC
T ss_conf 8999378734499884
No 129
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.56 E-value=8.7 Score=17.68 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=25.0
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
...|..|-+.+.. +.+. -.+..||.+|+ +|-.|...|
T Consensus 15 ~~~C~~C~~~I~~-~~v~--a~g~~~H~~CF--------~C~~C~~~L 51 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS--AMDTVWHPECF--------VCGDCFTSF 51 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE--ETTEEECTTTC--------BCSSSCCBS
T ss_pred CCHHHHCCCCCCC-CEEE--ECCCEECCCCC--------CCCCCCCCC
T ss_conf 9101654995336-1999--99846767898--------356789997
No 130
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.12 E-value=6.9 Score=18.20 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCCCEECCCCCCCCEE---EEC--CCCCCCCCCCHHHHHHCCC
Q ss_conf 76042134667789715---650--0344337732168986089
Q T0539 30 EMCCPICCSEYVKGEVA---TEL--PCHHYFHKPCVSIWLQKSG 68 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~---~~l--~C~H~Fh~~Ci~~Wl~~~~ 68 (81)
...||-|...++..+.- .-. .|++.|+..|...|-..+.
T Consensus 6 tK~CP~C~~~ieK~~GCnhm~C~~~~C~~~fCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred CCCCCCCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCC
T ss_conf 86997999878877899877969989998496588982455789
No 131
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.88 E-value=12 Score=16.95 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 60421346677897156500344337732168986089988026758
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
..|.-|-+.+.. ..+. --+..||.+|+ .|=.|+..|
T Consensus 26 p~C~~C~~~I~~-~~v~--a~g~~~H~~CF--------~C~~C~~~l 61 (90)
T 2dar_A 26 PMCAHCNQVIRG-PFLV--ALGKSWHPEEF--------NCAHCKNTM 61 (90)
T ss_dssp CBBSSSCCBCCS-CEEE--ETTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCCCCCCCCC-CEEE--ECCCCCCCCCC--------CCCCCCCCC
T ss_conf 301469898325-5479--89861436887--------216689897
No 132
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.12 E-value=13 Score=16.74 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 760421346677897156500344337732168986089988026758
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
...|.-|.+.+..++.+ +.--+..||.+|+ +|=.|...|
T Consensus 15 ~~~C~~C~~~I~~~~~~-v~~~g~~~H~~CF--------~C~~C~~~L 53 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSL 53 (82)
T ss_dssp SCBCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBC
T ss_pred CCCCCCCCCCCCCCEEE-EEECCCCCCCCCC--------EECCCCCCC
T ss_conf 88660369931588289-9989901560888--------177789997
No 133
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.92 E-value=19 Score=15.99 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=19.8
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 604213466778971565003443377321689860899880267588
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
..|..|-..+..+.-. ..=+..||..|..+- ....|-.|++.|.
T Consensus 34 F~C~~C~~~L~~~~~~--~~~g~~yC~~c~~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFV--AKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCE--EETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred CEECCCCCCCCCCCCE--ECCCCCCCCCCHHHH--CCCCCCCCCCEEC
T ss_conf 7046789854455113--036805137540202--2851787898355
No 134
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.84 E-value=19 Score=15.99 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=24.9
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 60421346677897156500344337732168986089988026758
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
..|.-|-+.+.. ..+ .-.++.||.+|+ .|=.|.+.|
T Consensus 16 ~~C~~C~~~I~~-~~v--~~~g~~~H~~CF--------~C~~C~~~L 51 (81)
T 2dlo_A 16 EKCATCSQPILD-RIL--RAMGKAYHPGCF--------TCVVCHRGL 51 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTTC--------BCSSSCCBC
T ss_pred HHHHCCCCEECC-CEE--EECCCCCCCCCC--------EECCCCCCC
T ss_conf 135708997013-188--989922440457--------738798984
No 135
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.59 E-value=17 Score=16.29 Aligned_cols=38 Identities=18% Similarity=0.543 Sum_probs=21.9
Q ss_pred CCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 7604213466778971565003443377321689860899880267588
Q T0539 30 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 30 ~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
...|..|-..+.. +.+. --+..||.+|+ +|=.|+..|.
T Consensus 5 s~~C~~C~~~I~~-~~v~--a~g~~~H~~CF--------~C~~C~~~l~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--AMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--ETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCCCHHCCCEECC-CEEE--ECCEEECCCCC--------CCCCCCCCCC
T ss_conf 8600418998327-1999--99944577998--------6044888779
No 136
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.49 E-value=17 Score=16.21 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 604213466778971565003443377321689860899880267588
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 78 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p 78 (81)
..|..|-+.+.. +.+. --++.||.+|+ +|=.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~~v~--a~g~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVT--YREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEEE--SSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCCCCCEECC-CEEE--ECCCEECCCCC--------CCCCCCCCCC
T ss_conf 524147999179-8999--99841135348--------7236898879
No 137
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=38.43 E-value=19 Score=15.95 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=25.7
Q ss_pred CEECCCCCCCCEEEEC-C-CCCCCCCCCHHHHH----HCCCCCCCC
Q ss_conf 2134667789715650-0-34433773216898----608998802
Q T0539 34 PICCSEYVKGEVATEL-P-CHHYFHKPCVSIWL----QKSGTCPVC 73 (81)
Q Consensus 34 ~ICl~~~~~~~~~~~l-~-C~H~Fh~~Ci~~Wl----~~~~~CP~C 73 (81)
..|...+++++..+.- . |..-||..|+.--. ...-.||.|
T Consensus 6 ~~C~~p~~~~~~~I~CD~~C~~W~H~~C~g~~~~~~~~~~~~C~~C 51 (52)
T 2kgg_A 6 QNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51 (52)
T ss_dssp TTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCEECCCCCCCCHHHCCCCCEECCCC
T ss_conf 7050977999898789998969699568894834289974899889
No 138
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B
Probab=36.69 E-value=12 Score=16.92 Aligned_cols=40 Identities=20% Similarity=0.512 Sum_probs=26.5
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 7760421346677897156500344337732168986089988026758
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
....|..|...+..++.++ .--++.||.+|+. |=.|...|
T Consensus 10 ~~~~C~~C~~~I~~~~~~v-~a~~~~~H~~CF~--------C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCFV--------CAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EETTEEEETTTSS--------CTTTCCCC
T ss_pred CCCCCCCCCCEECCCCEEE-EECCCEECCCCCC--------CCCCCCCC
T ss_conf 8972822499835892899-9798467632488--------64769767
No 139
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=34.73 E-value=22 Score=15.64 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCCCCCCEECCCCCC--CCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 777604213466778--97156500344337732168986089988026758888
Q T0539 28 GQEMCCPICCSEYVK--GEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 80 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~--~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~p~p 80 (81)
++...|.+|...|.. ...-..-.||-..|..|..+ -..|+-+.++++.-
T Consensus 355 ~~~~~C~~C~~~~~~~~~r~hhCr~Cg~~vc~~C~~~----~p~~~~~~~~~~~~ 405 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR----VPPCGRHGQDFAGT 405 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG----SCCC----------
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCC----CCCCCCCCCCCCCC
T ss_conf 9998778788942300022848602749036565286----99889875435788
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.16 E-value=19 Score=15.95 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 604213466778971565003443377321
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
..|..|-+.+..++.+ +.--+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~-v~~~~~~~H~~CF 34 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF 34 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC
T ss_pred CCCCCCCCEEECCCEE-EEECCCEECCCCC
T ss_conf 7452589896028599-9989763774897
No 141
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=30.71 E-value=9.7 Score=17.44 Aligned_cols=27 Identities=22% Similarity=0.648 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCC
Q ss_conf 00344337732168986089988026758-888
Q T0539 49 LPCHHYFHKPCVSIWLQKSGTCPVCRCMF-PPP 80 (81)
Q Consensus 49 l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~-p~p 80 (81)
..||=.|-. . ++.=+.||.||.++ -+|
T Consensus 71 kkCGf~F~~----~-~kkPSRCP~CKSE~IeeP 98 (105)
T 2gmg_A 71 RKCGFVFKA----E-INIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTTCCBCCC----C-SSCCSSCSSSCCCCBCCC
T ss_pred CCCCCEECC----C-CCCCCCCCCCCCCCCCCC
T ss_conf 307678377----7-999998999888462498
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.89 E-value=8.1 Score=17.83 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q ss_conf 89988026758
Q T0539 67 SGTCPVCRCMF 77 (81)
Q Consensus 67 ~~~CP~CR~~~ 77 (81)
.+.||+|.+++
T Consensus 47 ~GkCPvCgreL 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCCC
T ss_conf 78799889937
No 143
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.48 E-value=21 Score=15.81 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 77760421346677897156500344337732168986089988026758
Q T0539 28 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 77 (81)
Q Consensus 28 ~~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~~ 77 (81)
.....|..|--.+...+.+. ..=|+.||..|.. |-.|.+.|
T Consensus 9 ~~S~~C~~C~K~vYpaE~~~-~~~GklyHk~CFk--------C~~C~~qL 49 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIV-NSNGELYHEQCFV--------CAQCFQQF 49 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCE-EETTEEECTTTCC--------CTTTCCCC
T ss_pred CCCCCHHHCCCCCCCCCEEE-CCCCEEHHHHCCC--------HHHHCCCC
T ss_conf 34430010477213365032-5775362773342--------88866884
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.35 E-value=24 Score=15.48 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=17.7
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 604213466778971565003443377321
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
..|..|-+.+..++.++ .--+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~v-~~~~~~~H~~CF 34 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF 34 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT
T ss_pred CCCCCCCCEEECCCEEE-EECCCEECCCCC
T ss_conf 83536998950596999-989565770577
No 145
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.58 E-value=33 Score=14.79 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=11.9
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 604213466778971565003443377321
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
..|.-|...+.. ..+ ..=++.||.+|+
T Consensus 6 ~~C~~C~~~I~~-~~i--~a~~~~~H~~CF 32 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--EAGEKHYHPSCA 32 (73)
T ss_dssp CSCSSSCCCCSS-CCB--CCSSCCBCTTTS
T ss_pred CCHHHCCCEECC-EEE--EECCCEECCCCC
T ss_conf 551454998015-079--978822682848
No 146
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.45 E-value=33 Score=14.80 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=14.1
Q ss_pred EEECCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 5650034433773216898608998802675
Q T0539 46 ATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 76 (81)
Q Consensus 46 ~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 76 (81)
-+...|||++-.+ .-..||+|.+.
T Consensus 172 ~~C~~CG~i~~g~-------~p~~CP~C~~~ 195 (202)
T 1yuz_A 172 HLCPICGYIHKGE-------DFEKCPICFRP 195 (202)
T ss_dssp EECSSSCCEEESS-------CCSBCTTTCCB
T ss_pred EECCCCCCEECCC-------CCCCCCCCCCC
T ss_conf 7889999852199-------99989999987
No 147
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.38 E-value=33 Score=14.77 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=10.6
Q ss_pred CCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 04213466778971565003443377321
Q T0539 32 CCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 32 ~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
.|..|-..+... .+. --+..||.+|+
T Consensus 7 ~C~~C~~~I~~~-~v~--a~g~~~H~~CF 32 (69)
T 2cur_A 7 GCVKCNKAITSG-GIT--YQDQPWHADCF 32 (69)
T ss_dssp CCSSSCCCCCTT-CEE--ETTEEECTTTT
T ss_pred CCCCCCCEECCC-EEE--ECCCEECCCCC
T ss_conf 652579990883-899--99864746786
No 148
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.05 E-value=34 Score=14.74 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=18.7
Q ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 77604213466778971565003443377321
Q T0539 29 QEMCCPICCSEYVKGEVATELPCHHYFHKPCV 60 (81)
Q Consensus 29 ~~~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci 60 (81)
....|..|-..+.. ..+. --+..||.+|+
T Consensus 24 ~~p~C~~C~~~I~~-~~v~--a~g~~~H~~CF 52 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK--ARDKYRHPECF 52 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE--SSSCEECTTTC
T ss_pred CCCCCCCCCCEEEE-EEEE--ECCEEECCCCC
T ss_conf 68564689996550-1899--89921535677
No 149
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.86 E-value=24 Score=15.45 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=16.5
Q ss_pred CCCCEECCCCCCCC-EEEECCCCCCCCCCCH
Q ss_conf 60421346677897-1565003443377321
Q T0539 31 MCCPICCSEYVKGE-VATELPCHHYFHKPCV 60 (81)
Q Consensus 31 ~~C~ICl~~~~~~~-~~~~l~C~H~Fh~~Ci 60 (81)
..|.-|-+.+.... ...+.--++.||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~v~~~g~~~H~~CF 36 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF 36 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC
T ss_pred CCCCCCCCEECCCCCEEEEEECCCEECCCCC
T ss_conf 7260459960376652799989861650375
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=25 Score=15.36 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=16.1
Q ss_pred CCCCEECCCCCCC-CEEEECCCCCCCCCCCH
Q ss_conf 6042134667789-71565003443377321
Q T0539 31 MCCPICCSEYVKG-EVATELPCHHYFHKPCV 60 (81)
Q Consensus 31 ~~C~ICl~~~~~~-~~~~~l~C~H~Fh~~Ci 60 (81)
..|.-|-+.++.. +...+.--+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~i~~~~~~~H~~CF 36 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF 36 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCEECCCCC
T ss_conf 7370449941076643799989745751577
No 151
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=24.14 E-value=18 Score=16.11 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=21.1
Q ss_pred CCCCEECCCCCCCCEEEECCCCCCCCCCCHHH
Q ss_conf 60421346677897156500344337732168
Q T0539 31 MCCPICCSEYVKGEVATELPCHHYFHKPCVSI 62 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~H~Fh~~Ci~~ 62 (81)
.-|-||..-+.+| .+.-.||-.||..|-.+
T Consensus 15 afcdicqkfllng--frcqtcgykfhehcstk 44 (52)
T 1faq_A 15 AFCDICQKFLLNG--FRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp EECTTSSSEECSE--EECTTTTCCBCSTTSSS
T ss_pred HHHHHHHHHHHCC--CCCCCCCCHHHHHHCCC
T ss_conf 9999999997547--32130665488772667
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.50 E-value=25 Score=15.36 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCCCEECCCCCCCCEEEECCCC-CCCCCCCHHHH
Q ss_conf 6042134667789715650034-43377321689
Q T0539 31 MCCPICCSEYVKGEVATELPCH-HYFHKPCVSIW 63 (81)
Q Consensus 31 ~~C~ICl~~~~~~~~~~~l~C~-H~Fh~~Ci~~W 63 (81)
-=|.||.++ ..++.+.|. -.||..|.+.-
T Consensus 9 PWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CEEEEECCC----CEEEECCCCCCEEHHHHHHHH
T ss_conf 776887698----706836999864417888886
No 153
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.59 E-value=15 Score=16.47 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=29.3
Q ss_pred CCCCC--CEECCCCCCCCEEEEC-CCCCCCCCCCHHHH--HH---CCCCCCCCCC
Q ss_conf 77604--2134667789715650-03443377321689--86---0899880267
Q T0539 29 QEMCC--PICCSEYVKGEVATEL-PCHHYFHKPCVSIW--LQ---KSGTCPVCRC 75 (81)
Q Consensus 29 ~~~~C--~ICl~~~~~~~~~~~l-~C~H~Fh~~Ci~~W--l~---~~~~CP~CR~ 75 (81)
.+..| -||-..|+.+.=.+.. -|++-||..|+.-= -. .+-.||-|+.
T Consensus 33 ~~~~~vyCiC~~p~d~~~fmI~Cd~C~~W~H~~C~~~~e~~~~~id~y~C~~C~~ 87 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCC
T ss_conf 4452379970787778638998999998786368898711315630899919956
No 154
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=20.84 E-value=37 Score=14.53 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.1
Q ss_pred CCCCCCEECCCCCC----CCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 77604213466778----9715650034433773216898608998802675
Q T0539 29 QEMCCPICCSEYVK----GEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 76 (81)
Q Consensus 29 ~~~~C~ICl~~~~~----~~~~~~l~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 76 (81)
....|.+|...+-. .+......|+-..|..|+. +....|+-||.+
T Consensus 34 ~~t~C~~C~~~iwg~~~~~qg~~C~~C~~~~H~~C~~---~~~~~c~pC~v~ 82 (84)
T 2row_A 34 FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD---KKEEIIAPCKVY 82 (84)
T ss_dssp SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH---HTCTTCCCCSTT
T ss_pred CCCCCHHHCCHHCCCCCCCCCEECCCCCCCHHHHHCC---CCCCCCCCCCCC
T ss_conf 9969414180320750166622768999943253552---178847887788
No 155
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.61 E-value=42 Score=14.26 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=14.0
Q ss_pred CCCEECCCCCCCCEE-EECCCCCCCCCCCHHHH
Q ss_conf 042134667789715-65003443377321689
Q T0539 32 CCPICCSEYVKGEVA-TELPCHHYFHKPCVSIW 63 (81)
Q Consensus 32 ~C~ICl~~~~~~~~~-~~l~C~H~Fh~~Ci~~W 63 (81)
+|..|.+..+....+ +.|.|...||.+.+..-
T Consensus 48 ec~~~f~~~~~~~gl~vcl~~~~~~~~~~~~~~ 80 (854)
T 3ihp_A 48 ECAFSFDTPESEGGLYICMNTFLGFGKQYVERH 80 (854)
T ss_dssp SCSSSSCCTTSTTCEEEETTTCCEECTTTHHHH
T ss_pred CCCEECCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 183134789999976884376302439999987
Done!