Query T0540 FAIM-NTD, Human, 90 residues
Match_columns 90
No_of_seqs 29 out of 31
Neff 2.4
Searched_HMMs 22458
Date Fri May 21 18:04:28 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0540.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0540.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7p_D VPS36P, YLR417W; ESCRT- 78.9 0.31 1.4E-05 27.8 0.0 35 6-40 26-63 (566)
2 1q9h_A Cellobiohydrolase I cat 60.4 3.7 0.00017 21.4 2.2 53 10-65 84-137 (437)
3 3m4w_A Sigma-E factor regulato 54.0 8.4 0.00037 19.3 3.1 36 46-85 105-141 (295)
4 2rfw_A Cellulose 1,4-beta-cell 45.3 5.2 0.00023 20.6 0.9 37 24-63 101-138 (430)
5 1eg1_A Endoglucanase I; mutati 42.6 10 0.00045 18.8 2.1 37 25-64 103-140 (371)
6 1hux_A Activator of (R)-2-hydr 39.5 22 0.00099 16.8 3.9 31 15-45 2-32 (270)
7 1ojj_A Endoglucanase I; hydrol 38.7 14 0.00064 17.9 2.4 45 17-63 93-140 (402)
8 2hth_B Vacuolar protein sortin 38.6 14 0.00061 18.1 2.2 35 4-38 20-56 (140)
9 2jgs_A Circular permutant of a 35.4 15 0.00065 17.9 2.0 31 27-57 38-81 (130)
10 2ovw_A Endoglucanase I; glycos 34.0 14 0.00064 17.9 1.7 44 20-65 96-140 (411)
11 2v3i_A Exoglucanase 1; hydrola 32.5 9.1 0.0004 19.1 0.5 39 25-66 102-141 (434)
12 2jmz_A Hypothetical protein MJ 31.0 24 0.0011 16.6 2.5 81 3-84 73-160 (186)
13 2b29_A Replication protein A 7 30.7 31 0.0014 16.0 4.2 16 6-21 43-58 (123)
14 3lkw_A Fusion protein of nonst 30.1 8.4 0.00037 19.3 0.0 22 6-30 63-84 (236)
15 2cay_A VPS36 PH domain, vacuol 28.7 11 0.0005 18.6 0.5 36 4-39 32-70 (145)
16 1igd_A Protein G; immunoglobul 23.4 17 0.00078 17.4 0.6 13 75-87 6-18 (61)
17 3gne_A Val-1; alginate lyase, 22.7 43 0.0019 15.1 2.7 32 23-56 181-212 (252)
No 1
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transport; 3.6A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=78.87 E-value=0.31 Score=27.85 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=29.4
Q ss_pred EEEEEECCCCCEEE-EEEECCC--CCCEEEEECCEEEE
Q ss_conf 78664138980699-9841677--67189996893887
Q T0540 6 AVWDVALSDGVHKI-EFEHGTT--SGKRVVYVDGKEEI 40 (90)
Q Consensus 6 A~W~V~L~dgvhkI-eFEHGTt--sGKRvi~VDgkei~ 40 (90)
-.=.|-|.+|-+|| .|+.|+. |-+|+||||..+-.
T Consensus 26 vqd~VglY~Gk~K~~~~q~G~~yLTs~Ri~yvd~~~p~ 63 (566)
T 1w7p_D 26 IDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPT 63 (566)
T ss_dssp --------------------------------------
T ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCC
T ss_conf 73462322686556466577799963369997788753
No 2
>1q9h_A Cellobiohydrolase I catalytic domain; HET: NAG; 2.35A {Talaromyces emersonii} SCOP: b.29.1.10
Probab=60.38 E-value=3.7 Score=21.42 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.4
Q ss_pred EECCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEE
Q ss_conf 4138980699984167767189996893887311311112731-3301786564899
Q T0540 10 VALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATI 65 (90)
Q Consensus 10 V~L~dgvhkIeFEHGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I 65 (90)
|.-|+.--+..|-.++.-|-||-..+.. .+==||+|+|+| +|.|.-++.-|-+
T Consensus 84 VttsG~sLtl~~vt~~nvGsRvYLl~~~---~~Y~mf~Llg~EftFDVD~S~lpCGl 137 (437)
T 1q9h_A 84 VTSSGSSLKLNFVTGSNVGSRLYLLQDD---STYQIFKLLNREFSFDVDVSNLPCGL 137 (437)
T ss_dssp EEECSSEEEEESEETTEECEEEEEEEET---TEECEECCTTEEEEEEEECTTCCTTE
T ss_pred EEEECCEEEEEEECCCCCCCCEEEECCC---CCEEEEEECCCEEEEEECCCCCCCCC
T ss_conf 7851895899634077446327996489---82565552486678975123487544
No 3
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=53.96 E-value=8.4 Score=19.33 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCCEE-EEEEECCCCCCEEEEEEECCEE
Q ss_conf 111273133017865648-9998427996358999868852
Q T0540 46 FKLVGKETFYVGAAKTKA-TINIDAISGFAYEYTLEINGKS 85 (90)
Q Consensus 46 FkLVG~E~F~ig~~~~k~-~I~Id~~~gf~yeYtL~v~GKs 85 (90)
|++.|++ .|. +..| .|.+.|--++.|.|.||||-+|
T Consensus 105 ~~~~G~~--RVA--GR~a~vv~l~PkD~~Ry~y~lWiD~et 141 (295)
T 3m4w_A 105 FISVGRT--RIA--DRLCEVIRVVARDGTRYSYIVWMDTES 141 (295)
T ss_dssp EEEEEEE--EET--TEEEEEEEEEETTSCSCEEEEEEETTT
T ss_pred EEECCCC--EEC--CCEEEEEEEEECCCCEEEEEEEEECCC
T ss_conf 7976885--799--918899999857997788999997677
No 4
>2rfw_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycosidase; 1.60A {Melanocarpus albomyces} PDB: 2rfy_A* 2rfz_A* 2rg0_A*
Probab=45.33 E-value=5.2 Score=20.56 Aligned_cols=37 Identities=35% Similarity=0.613 Sum_probs=28.0
Q ss_pred CCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEE
Q ss_conf 67767189996893887311311112731-33017865648
Q T0540 24 GTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKA 63 (90)
Q Consensus 24 GTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~ 63 (90)
++.-|-||-..+..+ +==||+|+|+| +|.|.-++.-|
T Consensus 101 ~~nvgsRvYLl~~~~---~Y~~f~Llg~EftFDVD~S~lpC 138 (430)
T 2rfw_A 101 GTNVGSRFYLMNGPD---KYQMFNLMGNELAFDVDLSTVEC 138 (430)
T ss_dssp EEEECEEEEEBSSTT---SBCEECCTTEEEEEEEECTTCCT
T ss_pred CCCCCCEEEEECCCC---CEEEEEECCCEEEEEEECCCCCC
T ss_conf 652152279954898---26888833867889763257876
No 5
>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10
Probab=42.58 E-value=10 Score=18.84 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEE
Q ss_conf 7767189996893887311311112731-330178656489
Q T0540 25 TTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKAT 64 (90)
Q Consensus 25 TtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~ 64 (90)
+.-|-||-..+... +==||+|+|+| +|.|.-++.-|-
T Consensus 103 ~~vgsRvYLl~~d~---~Y~~f~Llg~EftFDVD~S~lpCG 140 (371)
T 1eg1_A 103 SSVSPRLYLLDSDG---EYVMLKLNGQELSFDVDLSALPCG 140 (371)
T ss_dssp ECCCCEEEEECTTS---SBCCBCCTTSEEEEEECTTSCCTT
T ss_pred CCCCCEEEEECCCC---CEEEEEECCCEEEEEEECCCCCCC
T ss_conf 31043179975899---378887359706888633788753
No 6
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=39.46 E-value=22 Score=16.82 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=26.9
Q ss_pred CCEEEEEEECCCCCCEEEEECCEEEEEECCC
Q ss_conf 8069998416776718999689388731131
Q T0540 15 GVHKIEFEHGTTSGKRVVYVDGKEEIRKEWM 45 (90)
Q Consensus 15 gvhkIeFEHGTtsGKRvi~VDgkei~RrdWM 45 (90)
.+|.+-..-|.|+-|-|+.-||+||+++--|
T Consensus 2 ~~ytlGIDsGStttK~vllkdg~eIi~t~lv 32 (270)
T 1hux_A 2 SIYTLGIDVGSTASKCIILKDGKEIVAKSLV 32 (270)
T ss_dssp CCEEEEEEECSSEEEEEEEETTTEEEEEEEE
T ss_pred CEEEEEECCCCCCEEEEEECCCCEEEEEEEE
T ss_conf 5389853147741137998353023225662
No 7
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Probab=38.68 E-value=14 Score=17.93 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred EEEEEE--ECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEE
Q ss_conf 699984--167767189996893887311311112731-33017865648
Q T0540 17 HKIEFE--HGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKA 63 (90)
Q Consensus 17 hkIeFE--HGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~ 63 (90)
-+..|- .|...|-||-..|..+ .+==||+|+|+| +|.|.-++.-|
T Consensus 93 l~L~~vt~~~~~vgsRvYLl~~d~--~~Ye~f~Llg~EftFdVD~S~lpC 140 (402)
T 1ojj_A 93 LRLQHILPDGRVPSPRVYLLDKTK--RRYEMLHLTGFEFTFDVDATKLPC 140 (402)
T ss_dssp EEEESSCTTSCCCCCEEEEECTTS--SSBCEECCTTSEEEEEEECTTCCT
T ss_pred EEEEEEECCCCEECCEEEEECCCC--CCEEEEEECCCEEEEEEECCCCCC
T ss_conf 999989258944053179975888--835788725971789853456876
No 8
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=38.64 E-value=14 Score=18.08 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=27.6
Q ss_pred EEEEEEEECCCCCEEEEEEECCC--CCCEEEEECCEE
Q ss_conf 27786641389806999841677--671899968938
Q T0540 4 LVAVWDVALSDGVHKIEFEHGTT--SGKRVVYVDGKE 38 (90)
Q Consensus 4 vvA~W~V~L~dgvhkIeFEHGTt--sGKRvi~VDgke 38 (90)
+--.=.|.|.||-.|+.|+.|+- |-.|+||+|-+.
T Consensus 20 l~~~~~V~lY~G~~kt~~~~G~l~LTshRli~~~~~~ 56 (140)
T 2hth_B 20 VIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN 56 (140)
T ss_dssp EEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC
T ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf 9980885886387763323648999824599944898
No 9
>2jgs_A Circular permutant of avidin; biotin, D-biotin, beta-barrel, protein engineering, nanobiotechnology, biotin-binding protein, glycoprotein; HET: BTN; 1.9A {Gallus gallus}
Probab=35.44 E-value=15 Score=17.91 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCCEEEEECCEEEEEECCCEE-------------ECCCEEEEEC
Q ss_conf 671899968938873113111-------------1273133017
Q T0540 27 SGKRVVYVDGKEEIRKEWMFK-------------LVGKETFYVG 57 (90)
Q Consensus 27 sGKRvi~VDgkei~RrdWMFk-------------LVG~E~F~ig 57 (90)
+|--.+-.||+|+|..-||.+ +||.++|+-=
T Consensus 38 tGQCf~c~~G~EvL~TtWlLrs~V~tc~D~WksTrVG~d~FTR~ 81 (130)
T 2jgs_A 38 TGQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGIMIFTRL 81 (130)
T ss_dssp EEEEEEC---CEEEEEEEEEECCCSSGGGGGGCEEEEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHEEECCCEEEEE
T ss_conf 88889879986786788875332587100231415514404898
No 10
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobiose, glycosylated protein; HET: NAG CBI; 2.30A {Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A* 4ovw_A* 1ovw_A*
Probab=33.96 E-value=14 Score=17.93 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=30.2
Q ss_pred EEEECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEE
Q ss_conf 984167767189996893887311311112731-3301786564899
Q T0540 20 EFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATI 65 (90)
Q Consensus 20 eFEHGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I 65 (90)
.+-+|..-|-||-..|..+ .+==||+|+|+| +|.|+-++.-|-+
T Consensus 96 ~vt~~~~vgsRvYLl~~d~--~~Yqmf~Llg~EftFdVD~S~lpCGl 140 (411)
T 2ovw_A 96 QLINNQLVSPRVYLLEENK--KKYEMLHLTGTEFSFDVEMEKLPCGM 140 (411)
T ss_dssp SEETTEECCCEEEEECTTS--SSBCCBCCTTCEEEEEEECTTCCTTE
T ss_pred EEECCCCCCCEEEEECCCC--CCEEEEEECCCEEEEEEECCCCCCCC
T ss_conf 6854883152079975788--83578994186788986424687643
No 11
>2v3i_A Exoglucanase 1; hydrolase, glycosidase, glycoprotein, carbohydrate metabolism, polysaccharide degradation, pyrrolidone carboxylic acid; HET: NAG XX6; 1.05A {Hypocrea jecorina} SCOP: b.29.1.10 PDB: 1dy4_A* 1cel_A* 2v3r_A* 7cel_A* 6cel_A* 3cel_A* 2cel_A* 5cel_A* 4cel_A* 1q2b_A* 1egn_A* 1q2e_A*
Probab=32.51 E-value=9.1 Score=19.13 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEEE
Q ss_conf 7767189996893887311311112731-33017865648999
Q T0540 25 TTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATIN 66 (90)
Q Consensus 25 TtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I~ 66 (90)
+.-|-||-..+.. .+-=||+|+|+| +|.|.-++.-|-++
T Consensus 102 ~nvGsRvYLl~~d---~~Y~mf~Llg~EftFDVD~S~lpCGlN 141 (434)
T 2v3i_A 102 KNVGARLYLMASD---TTYQEFTLLGNEFSFDVDVSQLPCGLN 141 (434)
T ss_dssp EEECEEEEEEEET---TEECCEECTTEEEEEEEECTTCCTTEE
T ss_pred CCCCCEEEEECCC---CCEEEEEECCCEEEEEECCCCCCCCCE
T ss_conf 5104317996478---824331324866789750445875542
No 12
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=31.05 E-value=24 Score=16.58 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=40.2
Q ss_pred CEEEEEEEECCCCCEEEEEEECC---CCC-CEEEEECCEEEEEECCCEE-ECCCEEEEECCCC--CEEEEEEECCCCCCE
Q ss_conf 42778664138980699984167---767-1899968938873113111-1273133017865--648999842799635
Q T0540 3 DLVAVWDVALSDGVHKIEFEHGT---TSG-KRVVYVDGKEEIRKEWMFK-LVGKETFYVGAAK--TKATINIDAISGFAY 75 (90)
Q Consensus 3 dvvA~W~V~L~dgvhkIeFEHGT---tsG-KRvi~VDgkei~RrdWMFk-LVG~E~F~ig~~~--~k~~I~Id~~~gf~y 75 (90)
.+.++|.-+.++.+++|.++.|. +|. -++.-.++.++.-+ ..-. -+|+......... ..-+..|+..+.-.+
T Consensus 73 ~V~~v~~~~~~~~~~~i~~~~G~~i~~T~~Hp~l~~~~g~~~~~-~a~~L~~GD~l~~~~~~~~~~~~I~~ie~~~~~~~ 151 (186)
T 2jmz_A 73 RILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKTGEVLEI-NAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGH 151 (186)
T ss_dssp ECCEEEEECCCEEEECCCCTTSCCCCBCTTCEEEEEETTEEEEE-EGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSC
T ss_pred EEEEEEEECCCCEEEEEEECCCCEEEEECCEEEEEECCCEEEEE-EHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCE
T ss_conf 97999993688749999978998999718958999429989998-96788899889994686411577899986559988
Q ss_pred EEEEEECCE
Q ss_conf 899986885
Q T0540 76 EYTLEINGK 84 (90)
Q Consensus 76 eYtL~v~GK 84 (90)
-|.|.|.+-
T Consensus 152 VYdl~Ve~~ 160 (186)
T 2jmz_A 152 IYDLTVEDN 160 (186)
T ss_dssp EEEEECTTT
T ss_pred EEEEEECCC
T ss_conf 998398999
No 13
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=30.74 E-value=31 Score=15.97 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.1
Q ss_pred EEEEEECCCCCEEEEE
Q ss_conf 7866413898069998
Q T0540 6 AVWDVALSDGVHKIEF 21 (90)
Q Consensus 6 A~W~V~L~dgvhkIeF 21 (90)
-++.+-||||+|.++.
T Consensus 43 ~RyRi~lSDG~~~~~~ 58 (123)
T 2b29_A 43 PRYRLLMSDGLNTLSS 58 (123)
T ss_dssp CEEEEEEECSSEEEEE
T ss_pred CCEEEEEECCCCEEEE
T ss_conf 5089999766702220
No 14
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A
Probab=30.05 E-value=8.4 Score=19.32 Aligned_cols=22 Identities=32% Similarity=0.749 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCE
Q ss_conf 7866413898069998416776718
Q T0540 6 AVWDVALSDGVHKIEFEHGTTSGKR 30 (90)
Q Consensus 6 A~W~V~L~dgvhkIeFEHGTtsGKR 30 (90)
+.||+| +||+|+|- .+|-- |++
T Consensus 63 ~lwd~P-~~GvYRI~-~~gl~-G~~ 84 (236)
T 3lkw_A 63 VLWDTP-SPGIYRIL-QRGLL-GRS 84 (236)
T ss_dssp CCCSSC-CCEEEEEE-EEETT-EEE
T ss_pred EEECCC-CCCEEEEE-ECCCC-CCC
T ss_conf 064389-99479998-35555-554
No 15
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=28.71 E-value=11 Score=18.58 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=27.6
Q ss_pred EEEEEEEECCCCCEEE-EEEECCC--CCCEEEEECCEEE
Q ss_conf 2778664138980699-9841677--6718999689388
Q T0540 4 LVAVWDVALSDGVHKI-EFEHGTT--SGKRVVYVDGKEE 39 (90)
Q Consensus 4 vvA~W~V~L~dgvhkI-eFEHGTt--sGKRvi~VDgkei 39 (90)
+...=.|.|.+|-.|+ .|+.|+. |-.|+||+|..+.
T Consensus 32 l~~q~~V~Ly~g~~K~~~~~~G~lyLTshRlI~vd~~~~ 70 (145)
T 2cay_A 32 IFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKP 70 (145)
T ss_dssp EEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCH
T ss_pred EEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCC
T ss_conf 999478578868855656667569997118999569987
No 16
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A
Probab=23.44 E-value=17 Score=17.43 Aligned_cols=13 Identities=62% Similarity=0.879 Sum_probs=10.0
Q ss_pred EEEEEEECCEEHH
Q ss_conf 5899986885213
Q T0540 75 YEYTLEINGKSLK 87 (90)
Q Consensus 75 yeYtL~v~GKsl~ 87 (90)
-.|.|.||||+|+
T Consensus 6 ttyklvingktlk 18 (61)
T 1igd_A 6 TTYKLVINGKTLK 18 (61)
T ss_dssp EEEEEEEECSSCE
T ss_pred EEEEEEEECCEEC
T ss_conf 6899998071304
No 17
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=22.72 E-value=43 Score=15.09 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=22.5
Q ss_pred ECCCCCCEEEEECCEEEEEECCCEEECCCEEEEE
Q ss_conf 1677671899968938873113111127313301
Q T0540 23 HGTTSGKRVVYVDGKEEIRKEWMFKLVGKETFYV 56 (90)
Q Consensus 23 HGTtsGKRvi~VDgkei~RrdWMFkLVG~E~F~i 56 (90)
-|-+-|.-.+||||++++.++-+|+- .+.+.|
T Consensus 181 ~GqaDG~i~lwvDGk~v~~~~l~~R~--~~~~~I 212 (252)
T 3gne_A 181 IPQLDGESYVIVNGKKEVLKRINWSR--SPDLLI 212 (252)
T ss_dssp EECSCEEEEEEETTEEEEEEEECCCS--STTCCE
T ss_pred CCCCCCEEEEEECCEEEEECCCEEEE--CCCCCE
T ss_conf 76667279999999995744758865--687438
Done!