Query T0540 FAIM-NTD, Human, 90 residues
Match_columns 90
No_of_seqs 29 out of 31
Neff 2.4
Searched_HMMs 15564
Date Fri May 21 18:06:19 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0540.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0540.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ha_ b.29.1.10 (A:) Cellobi 53.5 4.5 0.00029 20.0 2.5 54 10-66 84-138 (435)
2 d2v3ia1 b.29.1.10 (A:1-434) Ce 46.0 3.1 0.0002 20.9 0.7 50 14-66 88-141 (434)
3 d1gpia_ b.29.1.10 (A:) Cellobi 45.7 6.8 0.00044 18.9 2.4 51 10-63 84-135 (431)
4 d3ovwa_ b.29.1.10 (A:) Cellobi 43.8 3.4 0.00022 20.7 0.6 43 22-66 98-141 (400)
5 d1ojja_ b.29.1.10 (A:) Cellobi 43.2 3.9 0.00025 20.3 0.9 45 17-63 93-140 (399)
6 d2o14a1 b.18.1.32 (A:14-159) H 41.9 14 0.0009 17.0 8.0 65 6-74 65-131 (146)
7 d1eg1a_ b.29.1.10 (A:) Cellobi 37.5 9.4 0.0006 18.1 2.1 37 25-64 103-140 (371)
8 d2hthb1 b.55.1.12 (B:3-131) Va 31.6 3 0.00019 21.0 -1.3 34 5-38 17-52 (129)
9 d1swga_ b.61.1.1 (A:) Streptav 27.6 18 0.0012 16.4 2.2 40 27-69 42-93 (126)
10 d2caya1 b.55.1.12 (A:1-99,A:25 27.1 8.6 0.00055 18.3 0.5 35 4-38 24-61 (130)
11 d2b3ga1 b.40.4.3 (A:3-114) Rep 24.6 28 0.0018 15.3 4.1 37 6-42 38-102 (112)
12 d2fhfa3 b.3.1.3 (A:32-162) Pul 20.3 34 0.0022 14.8 2.5 18 4-21 77-94 (131)
No 1
>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId: 68825]}
Probab=53.55 E-value=4.5 Score=20.00 Aligned_cols=54 Identities=26% Similarity=0.455 Sum_probs=38.8
Q ss_pred EECCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEEE
Q ss_conf 4138980699984167767189996893887311311112731-33017865648999
Q T0540 10 VALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATIN 66 (90)
Q Consensus 10 V~L~dgvhkIeFEHGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I~ 66 (90)
|.-|+.--+..|--++.-|-||-..+. + .+==||+|+|+| +|.|.-++.-|-++
T Consensus 84 VttsG~sLtl~~vt~~nvGsRvYLl~~-d--~~Yqmf~Llg~EftFDVD~S~lpCGlN 138 (435)
T d1q9ha_ 84 VTSSGSSLKLNFVTGSNVGSRLYLLQD-D--STYQIFKLLNREFSFDVDVSNLPCGLN 138 (435)
T ss_dssp EEECSSEEEEESEETTEECEEEEEEEE-T--TEECEECCTTEEEEEEEECTTCCTTEE
T ss_pred EEEECCEEEEEEECCCCCCCCEEEECC-C--CCEEEEEECCCEEEEEECCCCCCCCCE
T ss_conf 784189689952317733531799637-8--835655524866788752124875431
No 2
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A [TaxId: 51453]}
Probab=45.97 E-value=3.1 Score=20.95 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCEEEEEEEC---CCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEEE
Q ss_conf 98069998416---7767189996893887311311112731-33017865648999
Q T0540 14 DGVHKIEFEHG---TTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATIN 66 (90)
Q Consensus 14 dgvhkIeFEHG---TtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I~ 66 (90)
+.--+..|-.+ +.-|-||-..+.. .+-=||+|+|+| +|.|.-++.-|-++
T Consensus 88 G~sLtl~~vt~~~~~nvGsRvYLl~~d---~~Yemf~Llg~EfTFDVD~S~lpCGlN 141 (434)
T d2v3ia1 88 GNSLSIGFVTQSAQKNVGARLYLMASD---TTYQEFTLLGNEFSFDVDVSQLPCGLN 141 (434)
T ss_dssp TTEEEEESEEESSSEEECEEEEEEEET---TEECCEECTTEEEEEEEECTTCCTTEE
T ss_pred CCEEEEEEECCCCCCEECCEEEEECCC---CCEEEEEECCCEEEEEECCCCCCCCCE
T ss_conf 894889868688875004307996378---833221215866788751345875441
No 3
>d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Phanerochaete chrysosporium, Cel7d [TaxId: 5306]}
Probab=45.66 E-value=6.8 Score=18.91 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=36.6
Q ss_pred EECCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEE
Q ss_conf 4138980699984167767189996893887311311112731-33017865648
Q T0540 10 VALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKA 63 (90)
Q Consensus 10 V~L~dgvhkIeFEHGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~ 63 (90)
|.-|+.--+..|--++.-|-||-..+.. .+==||+|+|+| +|.|.-++.-|
T Consensus 84 VttsG~sLtl~~vt~~nvGsRvYLl~~d---~~Yemf~Llg~EftFdVD~S~lpC 135 (431)
T d1gpia_ 84 ITSTGTALTLKFVTGSNVGSRVYLMADD---THYQLLKLLNQEFTFDVDMSNLPC 135 (431)
T ss_dssp EEECSSEEEEESEETTEECEEEEEEEET---TEECCBCCTTEEEEEEEECTTCCT
T ss_pred EEEECCEEEEEEECCCCCCCCEEEECCC---CCEEEEEECCCCEEEEEECCCCCC
T ss_conf 7841895999755388556217996388---836788716971688751556876
No 4
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]}
Probab=43.77 E-value=3.4 Score=20.70 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=29.3
Q ss_pred EECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEEEE
Q ss_conf 4167767189996893887311311112731-33017865648999
Q T0540 22 EHGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKATIN 66 (90)
Q Consensus 22 EHGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~I~ 66 (90)
-.+..-|-||-..|..+ .+==||+|+|+| +|.|+-++.-|-++
T Consensus 98 t~~~~vGsRvYLl~~d~--~~Yqmf~Llg~EfTFdVD~S~lpCGlN 141 (400)
T d3ovwa_ 98 INNQLVSPRVYLLEENK--KKYEMLHLTGTEFSFDVEMEKLPCGMN 141 (400)
T ss_dssp ETTEECCCEEEEECTTS--SSBCEECCTTCEEEEEEECTTCCTTEE
T ss_pred ECCCCCCCEEEEECCCC--CCEEEEEECCCEEEEEEECCCCCCCCE
T ss_conf 54883262189975787--735789933867888863356876432
No 5
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId: 34413]}
Probab=43.20 E-value=3.9 Score=20.33 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=29.3
Q ss_pred EEEEEE--ECCCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEE
Q ss_conf 699984--167767189996893887311311112731-33017865648
Q T0540 17 HKIEFE--HGTTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKA 63 (90)
Q Consensus 17 hkIeFE--HGTtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~ 63 (90)
-+..|- .|...|-||-..|..+ .+==||+|+|+| +|.|+-++.-|
T Consensus 93 Ltl~~vt~~~~~vgsRvYLl~~d~--~~Y~mf~Llg~EftFDVD~S~lpC 140 (399)
T d1ojja_ 93 LRLQHILPDGRVPSPRVYLLDKTK--RRYEMLHLTGFEFTFDVDATKLPC 140 (399)
T ss_dssp EEEESSCTTSCCCCCEEEEECTTS--SSBCEECCTTSEEEEEEECTTCCT
T ss_pred EEEEEECCCCCCCCCEEEEECCCC--CCEEEEEECCCEEEEEEECCCCCC
T ss_conf 999988158943064079975788--835789943867888753356876
No 6
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=41.88 E-value=14 Score=17.05 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=45.4
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCEEE-CCCEEEEECCCCCEEEEEE-ECCCCCC
Q ss_conf 7866413898069998416776718999689388731131111-2731330178656489998-4279963
Q T0540 6 AVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKL-VGKETFYVGAAKTKATINI-DAISGFA 74 (90)
Q Consensus 6 A~W~V~L~dgvhkIeFEHGTtsGKRvi~VDgkei~RrdWMFkL-VG~E~F~ig~~~~k~~I~I-d~~~gf~ 74 (90)
+.|.++|++|.|.+..--|-+. +--+.+.|.+.+.. |+- -...+|.|--.+-+-.|.. ++.+|..
T Consensus 65 ~~f~v~vPnG~Y~Vtv~~Gd~~-~~~~~~eg~~~~~~---~~g~~~~~~~~V~VtDG~L~l~ft~~~~G~~ 131 (146)
T d2o14a1 65 NTFNVDLPNGLYEVKVTLGNTA-RASVAAEGVFQVIN---MTGDGAEDTFQIPVTDGQLNLLVTEGKAGTA 131 (146)
T ss_dssp CCEEEECCSEEEEEEEEESSCS-EEEEEETTEEEEEE---EESTTCEEEEEEEECSSEEEEEEEESSTTSC
T ss_pred CEEEEECCCCEEEEEEEEECCC-CCCEEEEEEEECCC---CCCCCEEEEEEEEEECCEEEEEEECCCCCCC
T ss_conf 6699988997189999993677-76277851780026---6873177899999879948799843778986
No 7
>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]}
Probab=37.52 E-value=9.4 Score=18.09 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCE-EEEECCCCCEEE
Q ss_conf 7767189996893887311311112731-330178656489
Q T0540 25 TTSGKRVVYVDGKEEIRKEWMFKLVGKE-TFYVGAAKTKAT 64 (90)
Q Consensus 25 TtsGKRvi~VDgkei~RrdWMFkLVG~E-~F~ig~~~~k~~ 64 (90)
+.-|-||-..+... +==||+|+|+| +|.|.-++.-|-
T Consensus 103 ~~vGsRvYLl~~d~---~Yqmf~Llg~EftFdVD~S~lpCG 140 (371)
T d1eg1a_ 103 SSVSPRLYLLDSDG---EYVMLKLNGQELSFDVDLSALPCG 140 (371)
T ss_dssp ECCCCEEEEECTTS---SBCCBCCTTSEEEEEECTTSCCTT
T ss_pred CEECCEEEEECCCC---CEEEEEECCCEEEEEEECCCCCCC
T ss_conf 20233279975888---378887269716888644788752
No 8
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.56 E-value=3 Score=21.03 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCEEEEEEECC--CCCCEEEEECCEE
Q ss_conf 778664138980699984167--7671899968938
Q T0540 5 VAVWDVALSDGVHKIEFEHGT--TSGKRVVYVDGKE 38 (90)
Q Consensus 5 vA~W~V~L~dgvhkIeFEHGT--tsGKRvi~VDgke 38 (90)
--.=.|-|.||-.|+.|+-|+ -|-.|+||+|-+.
T Consensus 17 ~~~~~V~lydG~~k~~~~~G~l~LTthRli~~~~~~ 52 (129)
T d2hthb1 17 IQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN 52 (129)
T ss_dssp EEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC
T ss_pred EEECCEEEECCCCCCCCCCEEEEEEECEEEEECCCC
T ss_conf 980887856387752113328999824599945999
No 9
>d1swga_ b.61.1.1 (A:) Streptavidin {Streptomyces avidinii [TaxId: 1895]}
Probab=27.56 E-value=18 Score=16.39 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=25.2
Q ss_pred CCCEEEEECCEEEEEECCCE------------EECCCEEEEECCCCCEEEEEEEC
Q ss_conf 67189996893887311311------------11273133017865648999842
Q T0540 27 SGKRVVYVDGKEEIRKEWMF------------KLVGKETFYVGAAKTKATINIDA 69 (90)
Q Consensus 27 sGKRvi~VDgkei~RrdWMF------------kLVG~E~F~ig~~~~k~~I~Id~ 69 (90)
+|.- ..||+|+|..-|+. -+||.++|+--+ .++|.|.--+
T Consensus 42 tGQC--f~~g~EvL~TtWLLrs~Vt~~D~WkSTrVG~D~FTR~k-ps~a~~~~~~ 93 (126)
T d1swga_ 42 SGQY--VGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK-PSAASGGGSA 93 (126)
T ss_dssp EEEE--ECSTTCEEEEEEEEEECCCGGGGGGCEEEEEEEEEC-------------
T ss_pred EEEE--EECCCEEEEEEEEEECCCCCHHHHHHEEECCCCEEEEC-CCCCCCCCHH
T ss_conf 6777--63880257788865214661110112154244136634-4224575154
No 10
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.15 E-value=8.6 Score=18.31 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=27.2
Q ss_pred EEEEEEEECCCCCEEE-EEEECCC--CCCEEEEECCEE
Q ss_conf 2778664138980699-9841677--671899968938
Q T0540 4 LVAVWDVALSDGVHKI-EFEHGTT--SGKRVVYVDGKE 38 (90)
Q Consensus 4 vvA~W~V~L~dgvhkI-eFEHGTt--sGKRvi~VDgke 38 (90)
+...=+|.|.+|-.|+ .|..|+. |-.|+||+|..+
T Consensus 24 l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~ 61 (130)
T d2caya1 24 IFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAK 61 (130)
T ss_dssp EEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSC
T ss_pred EEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf 99827778788984675655755998732799816999
No 11
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=28 Score=15.31 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=24.1
Q ss_pred EEEEEECCCCCEEEEE-EE--------------------------CCC-CCCEEEEECCEEEEEE
Q ss_conf 7866413898069998-41--------------------------677-6718999689388731
Q T0540 6 AVWDVALSDGVHKIEF-EH--------------------------GTT-SGKRVVYVDGKEEIRK 42 (90)
Q Consensus 6 A~W~V~L~dgvhkIeF-EH--------------------------GTt-sGKRvi~VDgkei~Rr 42 (90)
-++.+.||||.|.+.+ =- -+- +|||++.|..-|++..
T Consensus 38 ~RyR~~lSDG~~~~~~amLatqln~~v~~g~l~~~sii~l~~y~~n~i~~~k~vlIIldleVl~~ 102 (112)
T d2b3ga1 38 PRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 102 (112)
T ss_dssp CEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECC
T ss_conf 40899997765311012334312556641984679889996889712468866999960088525
No 12
>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=20.30 E-value=34 Score=14.79 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.5
Q ss_pred EEEEEEEECCCCCEEEEE
Q ss_conf 277866413898069998
Q T0540 4 LVAVWDVALSDGVHKIEF 21 (90)
Q Consensus 4 vvA~W~V~L~dgvhkIeF 21 (90)
-=|.|+|||+++-.+|-|
T Consensus 77 yGaY~~V~L~~~a~~v~f 94 (131)
T d2fhfa3 77 YGPYWVIPLTKESGCINV 94 (131)
T ss_dssp TEEEEEEEBSCSSSEEEE
T ss_pred CEEEEEEEECCCCCEEEE
T ss_conf 326999880688860749
Done!