Query T0541 MvR254A, , 106 residues
Match_columns 106
No_of_seqs 115 out of 562
Neff 8.1
Searched_HMMs 22458
Date Fri May 21 18:04:10 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0541.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0541.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idu_A Uncharacterized protein 99.9 1.6E-24 7.3E-29 146.2 12.5 102 2-105 16-117 (127)
2 2kut_A Uncharacterized protein 99.8 2.2E-21 1E-25 129.8 5.5 100 4-104 2-112 (122)
3 2x41_A Beta-glucosidase; hydro 97.5 0.00096 4.3E-08 37.6 10.0 71 17-88 613-704 (721)
4 1vjj_A Protein-glutamine gluta 97.5 0.0014 6.1E-08 36.8 10.7 84 2-88 593-678 (692)
5 2q3z_A Transglutaminase 2; tra 96.9 0.012 5.3E-07 31.9 10.7 84 2-88 586-672 (687)
6 3isy_A Bsupi, intracellular pr 96.1 0.027 1.2E-06 30.0 8.2 73 12-84 11-101 (120)
7 1ex0_A Coagulation factor XIII 95.9 0.063 2.8E-06 28.1 9.5 83 2-87 629-712 (731)
8 2hr0_B Complement C3 alpha' ch 92.7 0.37 1.7E-05 24.0 8.6 78 5-84 81-166 (915)
9 2b39_A C3; thioester, immune d 91.5 0.53 2.3E-05 23.3 9.2 79 4-84 827-913 (1661)
10 2p9r_A Alpha-2-M, alpha-2-macr 90.8 0.63 2.8E-05 22.8 8.8 74 13-87 11-87 (102)
11 1cuo_A Protein (azurin ISO-2); 89.5 0.29 1.3E-05 24.6 3.8 62 21-82 27-112 (129)
12 2qsv_A Uncharacterized protein 89.3 0.84 3.7E-05 22.2 8.5 62 10-74 10-72 (220)
13 3hrz_B Cobra venom factor; ser 88.4 0.98 4.3E-05 21.8 8.8 78 5-84 82-166 (252)
14 3fsa_A Azurin; copper, cupredo 88.4 0.3 1.3E-05 24.5 3.3 70 11-82 16-112 (125)
15 2iaa_C Azurin; quinoprotein, t 87.6 0.64 2.8E-05 22.8 4.6 62 20-81 25-110 (128)
16 2ys4_A Hydrocephalus-inducing 87.5 1.1 4.8E-05 21.6 5.7 75 10-88 32-108 (122)
17 1xo8_A AT1G01470; structural g 87.3 1.2 5.1E-05 21.5 6.6 68 3-70 22-95 (151)
18 2ccw_A Azurin II, AZN-2; elect 86.6 0.73 3.2E-05 22.5 4.4 28 54-81 84-111 (129)
19 1yyc_A LEA protein, putative l 86.5 1.3 5.7E-05 21.2 9.1 83 3-85 45-146 (174)
20 1yew_A Particulate methane mon 85.6 1.4 6.1E-05 21.1 5.4 55 15-69 260-334 (382)
21 3cu7_A Complement C5; Mg domai 81.3 2.2 9.8E-05 20.0 7.5 80 4-85 822-915 (1676)
22 2pn5_A TEP1R, thioester-contai 78.1 2.8 0.00012 19.5 9.2 77 5-84 666-753 (1325)
23 2icn_B Prolactin-inducible pro 78.1 2.8 0.00013 19.4 7.9 75 8-86 10-88 (118)
24 2e6j_A Hydin protein; PAPD, st 76.8 2 8.9E-05 20.2 3.7 79 3-85 8-93 (112)
25 2hr0_A Complement C3 beta chai 75.2 3.4 0.00015 19.0 10.5 75 13-87 115-191 (645)
26 1nwp_A Azurin; electron transp 75.0 2.3 0.0001 19.9 3.6 61 21-81 27-111 (128)
27 2v5t_A NCAM2, N-CAM 2, neural 73.2 3.5 0.00015 19.0 4.1 40 5-49 3-43 (189)
28 1exg_A EXO-1,4-beta-D-glycanas 70.8 4.4 0.0002 18.4 8.0 53 18-70 18-89 (110)
29 3fcs_A Integrin, alpha 2B; bet 69.4 4.7 0.00021 18.3 12.9 98 2-103 609-739 (959)
30 3bn3_B ICAM-5, intercellular a 67.7 5.2 0.00023 18.1 10.0 73 12-86 98-173 (196)
31 3kcp_A Cellulosomal-scaffoldin 65.2 5.8 0.00026 17.8 5.5 43 3-45 6-48 (321)
32 2va4_A NCAM2, N-CAM 2, neural 63.1 6.4 0.00029 17.6 5.0 45 2-51 2-47 (192)
33 2ag4_A GM2-AP, ganglioside GM2 63.0 6.4 0.00029 17.6 8.5 85 5-89 17-150 (164)
34 3c12_A FLGD, flagellar protein 62.1 6.7 0.0003 17.5 5.8 52 35-89 38-97 (138)
35 3cfu_A Uncharacterized lipopro 59.9 7.4 0.00033 17.3 5.3 69 14-82 41-124 (159)
36 1zxq_A ICAM-2, intercellular a 57.3 8.2 0.00036 17.0 10.2 82 3-86 88-172 (192)
37 2e56_A Lymphocyte antigen 96; 52.8 9.8 0.00044 16.6 10.6 80 8-87 30-125 (144)
38 3ije_A Integrin alpha-V; integ 49.6 11 0.00049 16.3 12.4 96 2-101 603-731 (967)
39 1sdd_A Coagulation factor V; c 49.5 10 0.00046 16.5 3.0 49 22-70 69-127 (306)
40 2yuz_A Myosin-binding protein 48.6 9.6 0.00043 16.7 2.7 62 14-82 18-80 (100)
41 2aan_A Auracyanin A; cupredoxi 47.2 12 0.00054 16.1 5.6 57 21-82 43-123 (139)
42 1sdd_B Coagulation factor V; c 45.4 13 0.00058 16.0 3.2 49 22-70 78-136 (647)
43 1waa_A Titin; metal binding pr 45.0 13 0.00059 15.9 3.0 64 13-82 15-79 (93)
44 2dlt_A Myosin binding protein 44.2 14 0.00061 15.9 4.0 65 13-83 18-83 (106)
45 3but_A Uncharacterized protein 41.4 15 0.00067 15.6 8.1 66 5-70 1-74 (136)
46 2w3j_A Carbohydrate binding mo 39.1 17 0.00074 15.4 7.5 49 38-88 67-116 (145)
47 2yuv_A Myosin-binding protein 38.8 17 0.00074 15.4 4.6 63 14-82 19-82 (100)
48 2vzs_A CSXA, EXO-beta-D-glucos 36.4 18 0.00082 15.2 8.2 50 22-71 818-874 (1032)
49 2wnx_A Glycoside hydrolase, fa 36.1 19 0.00082 15.2 10.2 41 4-44 12-54 (170)
50 2bgo_A Endo-B1,4-mannanase 5C; 31.8 22 0.00098 14.8 5.9 45 38-87 63-107 (140)
51 3ir3_A HTD2, 3-hydroxyacyl-thi 31.3 19 0.00084 15.1 2.0 28 1-28 2-29 (148)
52 2dm7_A KIAA1556 protein; beta- 30.9 23 0.001 14.7 3.1 63 13-82 18-81 (108)
53 2e6p_A Obscurin-like protein 1 30.9 20 0.00087 15.0 2.0 62 15-82 22-84 (104)
54 1nep_A EPV20, BNPC2, epididyma 29.8 24 0.0011 14.6 10.8 78 12-89 27-117 (130)
55 2w47_A Lipolytic enzyme, G-D-S 29.5 24 0.0011 14.6 8.0 49 38-88 68-118 (144)
56 2cr6_A KIAA1556 protein, obscu 28.9 25 0.0011 14.5 2.3 64 14-82 24-89 (115)
57 2cal_A Rusticyanin; iron respi 27.9 26 0.0012 14.4 7.0 65 15-83 65-138 (154)
58 1pd6_A Cardiac MYBP-C;, myosin 27.5 26 0.0012 14.4 3.5 63 14-82 27-91 (104)
59 1g1c_A Immunoglobulin-like dom 27.4 27 0.0012 14.3 5.3 67 13-84 15-83 (99)
60 2edh_A Obscurin; IG-fold, stru 26.7 27 0.0012 14.3 4.6 64 12-82 28-92 (113)
61 2dck_A Xylanase J; family 11, 25.1 29 0.0013 14.1 8.6 62 20-88 280-341 (354)
62 2dku_A KIAA1556 protein; beta- 25.1 25 0.0011 14.5 1.6 63 14-82 19-82 (103)
63 2r7e_A Coagulation factor VIII 24.8 17 0.00076 15.4 0.8 49 19-70 81-142 (742)
64 2j8h_A Titin, connectin; polym 24.6 30 0.0013 14.1 7.0 76 2-83 4-82 (197)
65 2eny_A Obscurin; beta-sandwich 23.5 22 0.00096 14.8 1.1 66 13-82 18-84 (104)
66 3k0w_A Mucosa-associated lymph 22.2 34 0.0015 13.8 4.9 36 9-49 22-59 (218)
67 2e7c_A Myosin-binding protein 21.6 35 0.0015 13.7 5.5 64 15-83 36-99 (118)
68 2qv2_A OCRL, inositol polyphos 21.5 13 0.00058 16.0 -0.3 69 2-71 3-79 (342)
69 2edk_A Myosin-binding protein 20.5 29 0.0013 14.2 1.3 65 12-82 17-86 (101)
No 1
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=99.92 E-value=1.6e-24 Score=146.19 Aligned_cols=102 Identities=29% Similarity=0.393 Sum_probs=95.7
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEE
Q ss_conf 98607866025878899717999888855797568638999839937662464773899648898864217778964899
Q T0541 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLT 81 (106)
Q Consensus 2 lPDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~ 81 (106)
+|||.|+...|+.+..|+.++++++|+|+|...+.++.|+||++|.++....++ |+||++.++++.|.+. ..|.|+|+
T Consensus 16 ~PDL~v~~~~p~~~~~G~~~~i~v~V~N~G~~~a~~~~V~l~~dg~~~~~~ti~-L~pG~s~~v~~~~~~~-~~G~~~i~ 93 (127)
T 3idu_A 16 FPDLTVEIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT-QEGMYRIN 93 (127)
T ss_dssp SCCEEEEEESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS-SCEEEEEE
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCEEEEEEEEC-CCCCCEEEEEEEEEEC-CCCCEEEE
T ss_conf 999899925788534898899999999999755563799999899995248864-5999889999878814-58838899
Q ss_pred EEECCCCCEEECCCCCCEEEEEEE
Q ss_conf 997599958412178855888840
Q T0541 82 VNVDPENAVNEGNESNNTLTALVG 105 (106)
Q Consensus 82 v~vD~~n~v~E~~e~NN~~t~~v~ 105 (106)
+++|+.|.|.|.||+||.++..|-
T Consensus 94 ~~VD~~n~I~E~nE~NN~~s~~i~ 117 (127)
T 3idu_A 94 ATVDEENTVVELNENNNVATFDVS 117 (127)
T ss_dssp EEESTTCCSCCSCSSSSEEEEEEE
T ss_pred EEECCCCCEEECCCCCCEEEEEEE
T ss_conf 999789958216788887999999
No 2
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=99.83 E-value=2.2e-21 Score=129.79 Aligned_cols=100 Identities=21% Similarity=0.385 Sum_probs=89.6
Q ss_pred CEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEC-----CEEEEEEECCCCCCCCEEEEEEEEEECC-----
Q ss_conf 607866025878899717999888855797568638999839-----9376624647738996488988642177-----
Q T0541 4 DLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVD-----GIVVDTQTVTSLESENSTNVDFHWTLDG----- 73 (106)
Q Consensus 4 DL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~-----g~~~~~~~v~~L~~G~s~tv~~~~~~~~----- 73 (106)
||.| .++|+.|.+|+.++++++|+|+|..++.++.++||++ +.++++..+++|++|++.+++++|.++.
T Consensus 2 dl~I-t~~p~~p~~G~~v~i~~tV~N~G~~~a~~~~v~~y~~~~~~~~~~i~~~~~~~L~~G~~~t~~~~~~~p~~~~~~ 80 (122)
T 2kut_A 2 DLPI-TLSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWKATRKLAGR 80 (122)
T ss_dssp CCSE-ECCTTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBCCCCSCBCTTCEEECCEEEECCCCCSSC
T ss_pred EEEE-ECCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECEECCC
T ss_conf 0579-908999989998999999998996765844899999205779869775883450799728999935200000223
Q ss_pred -CCCCEEEEEEECCCCCEEECCCCCCEEEEEE
Q ss_conf -7896489999759995841217885588884
Q T0541 74 -TANSYTLTVNVDPENAVNEGNESNNTLTALV 104 (106)
Q Consensus 74 -~~G~~ti~v~vD~~n~v~E~~e~NN~~t~~v 104 (106)
..|.|+|.+++|+.+.|.|+||+||.+++.+
T Consensus 81 ~~~G~~~i~v~vD~~~~i~E~nE~NN~~s~~i 112 (122)
T 2kut_A 81 AANPGVPVYAVVDPDNRVAESDKANNVFSRIV 112 (122)
T ss_dssp CSCCCCCCCEEECCTTSSCHHHHTTSCBCCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 77840999999898883212566789687899
No 3
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=97.50 E-value=0.00096 Score=37.57 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=52.6
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECC----------EEEEEEECCCCCCCCEEEEEEEEEE-----------CCCC
Q ss_conf 997179998888557975686389998399----------3766246477389964889886421-----------7778
Q T0541 17 PNTVNTMTATIENQGNKDSTSFNVSLLVDG----------IVVDTQTVTSLESENSTNVDFHWTL-----------DGTA 75 (106)
Q Consensus 17 ~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g----------~~~~~~~v~~L~~G~s~tv~~~~~~-----------~~~~ 75 (106)
.++.++++++|+|.|..+... .|.+|+.. .+.+-..+..|+||++++++|+.++ ..++
T Consensus 613 ~~~~~~v~v~V~NtG~~~G~e-vvQlY~~~~~~~~~~P~k~L~gF~kv~~L~pGes~~v~~~~~~~~l~~~~~~~~~ve~ 691 (721)
T 2x41_A 613 DGETLRVQYRIENTGGRAGKE-VSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWVVEA 691 (721)
T ss_dssp CSSEEEEEEEEEECSSSCBCC-EEEEEEECCCSSSCCCSCEEEEEEECCCBCTTCEEEEEEEEEGGGGCEECSSCEEECC
T ss_pred CCCEEEEEEEEEECCCCCCCE-EEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECHHHEEEEECCEEEECC
T ss_conf 999799999999789785348-9899865178888862666078604365499982899999878890279799189917
Q ss_pred CCEEEEEEECCCC
Q ss_conf 9648999975999
Q T0541 76 NSYTLTVNVDPEN 88 (106)
Q Consensus 76 G~~ti~v~vD~~n 88 (106)
|.|.|.+=-++.+
T Consensus 692 G~y~~~vG~sS~d 704 (721)
T 2x41_A 692 GEYEVRVGASSRN 704 (721)
T ss_dssp EEEEEEEEEETTE
T ss_pred CEEEEEEECCCCC
T ss_conf 2799999699786
No 4
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=97.50 E-value=0.0014 Score=36.78 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEE--EEEECCCCCCCCEEEEEEEEEECCCCCCEE
Q ss_conf 986078660258788997179998888557975686389998399376--624647738996488988642177789648
Q T0541 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVV--DTQTVTSLESENSTNVDFHWTLDGTANSYT 79 (106)
Q Consensus 2 lPDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~--~~~~v~~L~~G~s~tv~~~~~~~~~~G~~t 79 (106)
.|||.|. -|..+..|+.+.++++++|-......++..++.-.|-.- ....++.|.||++.++++.++|. ..|.+.
T Consensus 593 ~PdL~Ie--vpg~~~Vg~el~v~vsFtNPL~~pL~ncvf~vEG~GL~~~~~~i~~g~V~PGet~~~~~~~tP~-~~G~~~ 669 (692)
T 1vjj_A 593 NPTLTLE--VLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNLKIDVPTLGPKERSRVRFDILPS-RSGTKQ 669 (692)
T ss_dssp CCCEEEE--ECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTSSSCEEEEECCBCTTCEEEEEEEECCC-SCEEEE
T ss_pred CCCEEEE--ECCCCCCCCCEEEEEEEECCCCCEEECEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEEEC-CCCCEE
T ss_conf 8987999--3797133871899999988887345048999982887776347875750899889999999827-861269
Q ss_pred EEEEECCCC
Q ss_conf 999975999
Q T0541 80 LTVNVDPEN 88 (106)
Q Consensus 80 i~v~vD~~n 88 (106)
|.|..|...
T Consensus 670 l~a~f~s~~ 678 (692)
T 1vjj_A 670 LLADFSCNK 678 (692)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
T ss_conf 999986786
No 5
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A
Probab=96.94 E-value=0.012 Score=31.86 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=63.9
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEE--EEEC-CCCCCCCEEEEEEEEEECCCCCCE
Q ss_conf 9860786602587889971799988885579756863899983993766--2464-773899648898864217778964
Q T0541 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVD--TQTV-TSLESENSTNVDFHWTLDGTANSY 78 (106)
Q Consensus 2 lPDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~--~~~v-~~L~~G~s~tv~~~~~~~~~~G~~ 78 (106)
.|||.|.- |..+..|+.+.+.++.+|--.....++...+.-.|-.-. ...+ ..+.||++.++++.+.|. ..|.+
T Consensus 586 ~P~l~I~v--~g~a~Vg~~l~v~vsFtNPL~~pL~nc~f~vEG~GL~~~~~~~~~~~~V~Pge~~~~~~~~~P~-~~G~~ 662 (687)
T 2q3z_A 586 NPEIKIRI--LGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLVPL-HMGLH 662 (687)
T ss_dssp CCCCEEEE--ESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCEEEEECSCBCTTCEEEEEEEECCC-SSSCE
T ss_pred CCCEEEEE--CCCCCCCCEEEEEEEEECCCCCEECCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEEECC-CCCCE
T ss_conf 89869995--8872149718999999888875120479999828978754798588710999889999999716-74026
Q ss_pred EEEEEECCCC
Q ss_conf 8999975999
Q T0541 79 TLTVNVDPEN 88 (106)
Q Consensus 79 ti~v~vD~~n 88 (106)
.|.|..|...
T Consensus 663 ~l~a~f~s~~ 672 (687)
T 2q3z_A 663 KLVVNFESDK 672 (687)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEECCC
T ss_conf 9999986551
No 6
>3isy_A Bsupi, intracellular proteinase inhibitor; NP_388994.1, intracellular proteinase inhibitor (bsupi) from bacillus subtilis, structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=96.14 E-value=0.027 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCC-----CCEEEEEEE---CCEEEEEEE----------CCCCCCCCEEEEEEEEEECC
Q ss_conf 587889971799988885579756-----863899983---993766246----------47738996488988642177
Q T0541 12 PVTVVPNTVNTMTATIENQGNKDS-----TSFNVSLLV---DGIVVDTQT----------VTSLESENSTNVDFHWTLDG 73 (106)
Q Consensus 12 p~~~~~g~~~tv~vtV~N~G~~~a-----~~~~v~~y~---~g~~~~~~~----------v~~L~~G~s~tv~~~~~~~~ 73 (106)
+.....++.+.++.+|+|.|.... .+....|.+ +|..+-.++ -..|+||++.+.+..|.-..
T Consensus 11 ~~~~~~~e~v~~~ltl~N~~~~~v~l~F~sg~~~d~~v~d~~G~~V~~~S~~k~Ftqa~~~~~l~~gE~~~f~~~~~~~~ 90 (120)
T 3isy_A 11 IDAIQEPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVP 90 (120)
T ss_dssp EEEEECSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCC
T ss_pred EEECCCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCCHHHHHHHEEEECCCCEEEEEEECCCCC
T ss_conf 41002785299999999189976898977998899999979998999986884236524108708998899985327768
Q ss_pred CCCCEEEEEEE
Q ss_conf 78964899997
Q T0541 74 TANSYTLTVNV 84 (106)
Q Consensus 74 ~~G~~ti~v~v 84 (106)
.+|.|++.+.+
T Consensus 91 ~pG~Ytl~a~~ 101 (120)
T 3isy_A 91 EPGTYEVKVTF 101 (120)
T ss_dssp CSEEEEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 89508999999
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=95.86 E-value=0.063 Score=28.09 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=54.5
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEE-EEEEECCCCCCCCEEEEEEEEEECCCCCCEEE
Q ss_conf 98607866025878899717999888855797568638999839937-66246477389964889886421777896489
Q T0541 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV-VDTQTVTSLESENSTNVDFHWTLDGTANSYTL 80 (106)
Q Consensus 2 lPDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~-~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti 80 (106)
-|||.|.- |..+..|+.+++.++.+|-=.....++...+.-.|-. ......+.+.||++.++++.+.|. ..|.+.|
T Consensus 629 ~P~l~I~v--~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~v~pg~~~~~~~~~~P~-~~G~~~L 705 (731)
T 1ex0_A 629 IPEIIIKV--RGTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGVTRPMKKMFREIRPNSTVQWEEVCRPW-VSGHRKL 705 (731)
T ss_dssp CCCCEEEE--EECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTTEEEEEEEEEEECTTCEEEEEEEECCS-SCEEEEE
T ss_pred CCCEEEEE--CCCCCCCCEEEEEEEEECCCCCEECCEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEECC-CCCCEEE
T ss_conf 89869996--89733397089999998988770146799998589884248855753989889999999717-7522699
Q ss_pred EEEECCC
Q ss_conf 9997599
Q T0541 81 TVNVDPE 87 (106)
Q Consensus 81 ~v~vD~~ 87 (106)
.|..|..
T Consensus 706 ~a~f~s~ 712 (731)
T 1ex0_A 706 IASMSSD 712 (731)
T ss_dssp EEEEECS
T ss_pred EEEEECC
T ss_conf 9998777
No 8
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 2a73_B* 2i07_B* 2a74_C* 2ice_C* 2qki_C* 2ice_B* 2a74_B* 2qki_B*
Probab=92.70 E-value=0.37 Score=24.03 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=49.4
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEE--------EEECCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 0786602587889971799988885579756863899983993766--------24647738996488988642177789
Q T0541 5 LVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVD--------TQTVTSLESENSTNVDFHWTLDGTAN 76 (106)
Q Consensus 5 L~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~--------~~~v~~L~~G~s~tv~~~~~~~~~~G 76 (106)
|.|.---|..+..|+++.+.++|.|......-...|.+..+..... ...+ .+++|++..+.|...+. ..|
T Consensus 81 ffi~~~LP~sv~rGEq~~i~~~V~Ny~~~~~~~v~V~l~~~~~~~~~~~~~~~~~~~v-~v~a~~~~~V~F~i~p~-~~G 158 (915)
T 2hr0_B 81 FFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTV-TIPPKSSLSVPYVIVPL-KTG 158 (915)
T ss_dssp SEEEEECCSEEETTCCEEEEEEEEECCSSCCEEEEEEECCCTTEECSCCSSSCEEEEE-EECTTEEEEEEEEEEEC-SCE
T ss_pred EEEECCCCCEEECCCEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCEEEEE-EECCCCEEEEEEEEEEC-CCC
T ss_conf 8997158976614989999999997989953899999953876254126887406999-99799849999999964-156
Q ss_pred CEEEEEEE
Q ss_conf 64899997
Q T0541 77 SYTLTVNV 84 (106)
Q Consensus 77 ~~ti~v~v 84 (106)
.+.|++.+
T Consensus 159 ~~~i~v~a 166 (915)
T 2hr0_B 159 LQEVEVKA 166 (915)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
T ss_conf 18899999
No 9
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=91.51 E-value=0.53 Score=23.25 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=49.7
Q ss_pred CEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEE--------EEECCCCCCCCEEEEEEEEEECCCC
Q ss_conf 60786602587889971799988885579756863899983993766--------2464773899648898864217778
Q T0541 4 DLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVD--------TQTVTSLESENSTNVDFHWTLDGTA 75 (106)
Q Consensus 4 DL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~--------~~~v~~L~~G~s~tv~~~~~~~~~~ 75 (106)
+|.+.---|..+..|+++.+.++|.|......-...|.+..++.... ...+ .+++|++.++.|...+. ..
T Consensus 827 pf~v~~~LP~sv~rGEq~~i~~~V~Ny~~~~~~~v~V~l~~~~~~~~~~~~~~~~~~~v-~v~a~~~~~v~f~i~p~-~~ 904 (1661)
T 2b39_A 827 DFFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKRHQQTI-TIPARSSVAVPYVIVPL-KI 904 (1661)
T ss_dssp SEEEEEECCSCEESSCEEEEEEEEEECCTTCCEEEEEEECCCTTEECSSCSSCCCEEEE-EECTTCEEEEEEEEEEC-SC
T ss_pred CEEEEECCCCEECCCCEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCEEEEE-EECCCCCEEEEEEEEEC-CC
T ss_conf 68998303417716989999999991677765189999961787366415788505999-99899838998874405-68
Q ss_pred CCEEEEEEE
Q ss_conf 964899997
Q T0541 76 NSYTLTVNV 84 (106)
Q Consensus 76 G~~ti~v~v 84 (106)
|.+.|.+.+
T Consensus 905 G~~~i~v~a 913 (1661)
T 2b39_A 905 GLHEVEVKA 913 (1661)
T ss_dssp EEEEEEEEE
T ss_pred CCEEEEEEE
T ss_conf 836799999
No 10
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=90.75 E-value=0.63 Score=22.85 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEE---CCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 87889971799988885579756863899983---9937662464773899648898864217778964899997599
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLV---DGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~---~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~vD~~ 87 (106)
+.-.+|+.+.+++-+.+..........+.+.+ +|..+....... ..+.....+|.++..+..|.|+|.+..+..
T Consensus 11 ~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~i~~p~g~~v~~~~~~~-~~~G~~~~~f~lp~~~~~G~y~i~~~~~~~ 87 (102)
T 2p9r_A 11 SIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQ-LEGGLKQFSFPLSSEPFQGSYKVVVQKKSG 87 (102)
T ss_dssp SEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEE-CBTTEEEEEEECCSSCCCEEEEEEEECTTS
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEEEC-CCCCEEEEEEECCCCCCCEEEEEEEEECCC
T ss_conf 76089999999999986856648777317999999998999798773-888579999999984343259999997899
No 11
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=89.46 E-value=0.29 Score=24.63 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=35.8
Q ss_pred EEEEEEEEECCCCC----CCCEEEEEEEC-----------CE---EE------EEEECCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 79998888557975----68638999839-----------93---76------624647738996488988642177789
Q T0541 21 NTMTATIENQGNKD----STSFNVSLLVD-----------GI---VV------DTQTVTSLESENSTNVDFHWTLDGTAN 76 (106)
Q Consensus 21 ~tv~vtV~N~G~~~----a~~~~v~~y~~-----------g~---~~------~~~~v~~L~~G~s~tv~~~~~~~~~~G 76 (106)
-+++++++|.|..+ .-++.+.-..+ +. .+ .......|.||++.+++|+...+..+|
T Consensus 27 ~~vtv~f~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~t~~l~pGes~~vtF~v~a~~~~G 106 (129)
T 1cuo_A 27 AEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDE 106 (129)
T ss_dssp SEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTS
T ss_pred EEEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCC
T ss_conf 37999999799576442025689616411778999887625322567866400021021028995589999855258994
Q ss_pred CEEEEE
Q ss_conf 648999
Q T0541 77 SYTLTV 82 (106)
Q Consensus 77 ~~ti~v 82 (106)
+|.+.-
T Consensus 107 ~Y~f~C 112 (129)
T 1cuo_A 107 AYTYFC 112 (129)
T ss_dssp CEEEEC
T ss_pred EEEEEE
T ss_conf 499994
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.10A {Porphyromonas gingivalis W83}
Probab=89.29 E-value=0.84 Score=22.19 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=34.6
Q ss_pred EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCE-EEEEEECCCCCCCCEEEEEEEEEECCC
Q ss_conf 02587889971799988885579756863899983993-766246477389964889886421777
Q T0541 10 LTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGI-VVDTQTVTSLESENSTNVDFHWTLDGT 74 (106)
Q Consensus 10 i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~-~~~~~~v~~L~~G~s~tv~~~~~~~~~ 74 (106)
+.-....+|+....+++|+|.|..... +++..... ......-..|+||++.++.+++.+...
T Consensus 10 i~F~~v~~g~~~~~~l~i~N~g~~~l~---~~~~~~~~~~~~~~~~~~L~pges~~i~vtf~p~~~ 72 (220)
T 2qsv_A 10 LLFPISMPEDEGVVRLVVNNTDESDLQ---VAVVSLPSFVSLDDRAFRLQAREPRELNLSLAVPRN 72 (220)
T ss_dssp EECCSBCTTCCCEEEEEEEECSSSCEE---EEEEECCTTEECSCCEEEECSSSCEEEEEEECCCTT
T ss_pred EECCCCCCCCEEEEEEEEEECCCCCEE---EEEECCCCCEEEECCCCEECCCCEEEEEEEEECCCC
T ss_conf 485865899888999999979999769---999568998798147407868970899999967856
No 13
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=88.39 E-value=0.98 Score=21.85 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=48.9
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEE-------EECCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 07866025878899717999888855797568638999839937662-------46477389964889886421777896
Q T0541 5 LVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDT-------QTVTSLESENSTNVDFHWTLDGTANS 77 (106)
Q Consensus 5 L~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~-------~~v~~L~~G~s~tv~~~~~~~~~~G~ 77 (106)
|.+.-.-|.....|+.+.+.+.|.|...... .+.+.+..++..... ...-.+.+++...+.|...+. ..|.
T Consensus 82 ~~v~~~lP~~v~~GD~~~i~v~v~N~~~~~~-~v~v~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~v~~~-~~G~ 159 (252)
T 3hrz_B 82 FFIDLQMPYSVVKNEQVEIRAILHNYVNEDI-YVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPL-EQGL 159 (252)
T ss_dssp EEEEECCCSCEETTCCEEEEEEEEECSSSCE-EEEEEECCCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEEC-SSEE
T ss_pred EEEEECCCCEEECCCEEEEEEEEEECCCCCE-EEEEEEECCCCEEECCCCCCCEEEEEEECCCCCEEEEEEEEEE-ECCE
T ss_conf 7999358968976989999999996779866-8999996477616023678714799984289852787788875-0463
Q ss_pred EEEEEEE
Q ss_conf 4899997
Q T0541 78 YTLTVNV 84 (106)
Q Consensus 78 ~ti~v~v 84 (106)
..+.+.+
T Consensus 160 ~~i~v~a 166 (252)
T 3hrz_B 160 HDVEIKA 166 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 8799999
No 14
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ...
Probab=88.37 E-value=0.3 Score=24.51 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=38.1
Q ss_pred ECCCC---CCCCEEEEEEEEEECCCCC----CCCEEEEE-------------------EEC-CEEEEEEECCCCCCCCEE
Q ss_conf 25878---8997179998888557975----68638999-------------------839-937662464773899648
Q T0541 11 TPVTV---VPNTVNTMTATIENQGNKD----STSFNVSL-------------------LVD-GIVVDTQTVTSLESENST 63 (106)
Q Consensus 11 ~p~~~---~~g~~~tv~vtV~N~G~~~----a~~~~v~~-------------------y~~-g~~~~~~~v~~L~~G~s~ 63 (106)
.|... .+|+. |+++++|.|... .-++.+.= |+. +..-.......|.||++.
T Consensus 16 ~~~~i~V~k~Ge~--V~~~~~N~G~~p~~~m~HN~vi~~~~~~~~~~~~~~~~~~~~~yvp~~~~~v~~~t~ll~pGes~ 93 (125)
T 3fsa_A 16 NTNAITVDKSCKQ--FTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKD 93 (125)
T ss_dssp SCSEEEECTTCSE--EEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEE
T ss_pred CCCEEEEECCCCE--EEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCEE
T ss_conf 1664899459978--99999807967655311357854725489999998762043167997641000024222799558
Q ss_pred EEEEEEEECCCCCCEEEEE
Q ss_conf 8988642177789648999
Q T0541 64 NVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 64 tv~~~~~~~~~~G~~ti~v 82 (106)
+++|+.+.-..+|+|.+.-
T Consensus 94 sitFt~p~~~~~G~Y~f~C 112 (125)
T 3fsa_A 94 SVTFDVSKLKEGEQYMFFC 112 (125)
T ss_dssp EEEEEGGGC---CCEEEEC
T ss_pred EEEEECCCCCCCCCEEEEC
T ss_conf 9999541457896199969
No 15
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=87.59 E-value=0.64 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=35.2
Q ss_pred EEEEEEEEEECCCCCC----CCEEEEE-------------------EEC-CEEEEEEECCCCCCCCEEEEEEEEEECCCC
Q ss_conf 1799988885579756----8638999-------------------839-937662464773899648898864217778
Q T0541 20 VNTMTATIENQGNKDS----TSFNVSL-------------------LVD-GIVVDTQTVTSLESENSTNVDFHWTLDGTA 75 (106)
Q Consensus 20 ~~tv~vtV~N~G~~~a----~~~~v~~-------------------y~~-g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~ 75 (106)
.-+++++++|.|.... -++.+.- |+. +..-.-.....|.||++.+++|+.+....+
T Consensus 25 Ge~v~l~l~N~g~l~~~~m~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~a~t~~l~pges~~i~f~~p~~~~~ 104 (128)
T 2iaa_C 25 CKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTFDVSKLKEG 104 (128)
T ss_dssp CSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEESSCCCTT
T ss_pred CCEEEEEEEECCCCCHHHCCCCEEECCCCCHHHHHHHHHHCHHHCCCCCCCCHHHHEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 98899999979967311113425872675379999998755332266898742221152101788637999998724789
Q ss_pred CCEEEE
Q ss_conf 964899
Q T0541 76 NSYTLT 81 (106)
Q Consensus 76 G~~ti~ 81 (106)
|+|.+.
T Consensus 105 G~Y~f~ 110 (128)
T 2iaa_C 105 EDYAFF 110 (128)
T ss_dssp CCEEEE
T ss_pred CCEEEE
T ss_conf 709999
No 16
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.55 E-value=1.1 Score=21.60 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=48.3
Q ss_pred EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEE--EEEEECCC
Q ss_conf 0258788997179998888557975686389998399376624647738996488988642177789648--99997599
Q T0541 10 LTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYT--LTVNVDPE 87 (106)
Q Consensus 10 i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~t--i~v~vD~~ 87 (106)
+.-.....|...+-.+.++|.|...+ ...+.........-....|+||++..+.+.+.|. ..|.|. +.+.+|..
T Consensus 32 ldFg~v~v~~~~~~~i~i~N~s~~~~---~f~~~~~~~F~i~p~~g~i~p~~~~~i~v~f~P~-~~~~~~~~l~i~~~~~ 107 (122)
T 2ys4_A 32 LNFSTCPVKYSTQKILLVRNIGNKNA---VFHIKTCRPFSIEPAIGTLNVGESMQLEVEFEPQ-SVGDHSGRLIVCYDTG 107 (122)
T ss_dssp ECCCSEESSSCEEEEEEEECCSSSCE---EEEEECCTTEEEESSEEEECTTCEEEEEEEECCS-SSBCCCCBCEEEESSS
T ss_pred EEECCCCCCCEEEEEEEEEECCCCCE---EEEECCCCEEEEECCEEEEECCCEEEEEEEEECC-CCEEEEEEEEEEECCC
T ss_conf 79899928999999999993889889---9997557619999999899599999999999779-8887999999999999
Q ss_pred C
Q ss_conf 9
Q T0541 88 N 88 (106)
Q Consensus 88 n 88 (106)
+
T Consensus 108 ~ 108 (122)
T 2ys4_A 108 E 108 (122)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 17
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=87.27 E-value=1.2 Score=21.47 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=49.4
Q ss_pred CCEEEEEEECCC-CCCCCEEEEEEEEEECCCCCCC--CEEEEEEECCEEEEEEEC---CCCCCCCEEEEEEEEE
Q ss_conf 860786602587-8899717999888855797568--638999839937662464---7738996488988642
Q T0541 3 PDLVPVSLTPVT-VVPNTVNTMTATIENQGNKDST--SFNVSLLVDGIVVDTQTV---TSLESENSTNVDFHWT 70 (106)
Q Consensus 3 PDL~v~~i~p~~-~~~g~~~tv~vtV~N~G~~~a~--~~~v~~y~~g~~~~~~~v---~~L~~G~s~tv~~~~~ 70 (106)
|+..+.++.+.. -..+..+.+.+.|+|-...... .....+|++|..+.+... ..+++.++.++++++.
T Consensus 22 PeV~l~~v~i~~vs~~~~~~~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~~v~vpv~ 95 (151)
T 1xo8_A 22 PEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CCCBCSEEEECCCTTTEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEECCEEEEEEECCCCCEECCCCCEEEEEEEE
T ss_conf 86999987976325523899999999799996787513799999999999867328985786888489999999
No 18
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=86.59 E-value=0.73 Score=22.51 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.0
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCEEEE
Q ss_conf 4773899648898864217778964899
Q T0541 54 VTSLESENSTNVDFHWTLDGTANSYTLT 81 (106)
Q Consensus 54 v~~L~~G~s~tv~~~~~~~~~~G~~ti~ 81 (106)
...|.||++.+++|+.+....+|+|.+.
T Consensus 84 t~~l~pges~~l~f~~p~~~~~G~Y~f~ 111 (129)
T 2ccw_A 84 TKVIGGGESDSVTFDVSKIAAGENYAYF 111 (129)
T ss_dssp CCCBCTTCEEEEEEEGGGSCTTCCEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf 3221788437999983466889619999
No 19
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=86.46 E-value=1.3 Score=21.22 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=57.5
Q ss_pred CCEEEEEEECC-CCCCCCEEEEEEEEEECCCCCC--CCEEEEEEECCEEEEEEEC---CCCCCCCEEEEEEEEEE-----
Q ss_conf 86078660258-7889971799988885579756--8638999839937662464---77389964889886421-----
Q T0541 3 PDLVPVSLTPV-TVVPNTVNTMTATIENQGNKDS--TSFNVSLLVDGIVVDTQTV---TSLESENSTNVDFHWTL----- 71 (106)
Q Consensus 3 PDL~v~~i~p~-~~~~g~~~tv~vtV~N~G~~~a--~~~~v~~y~~g~~~~~~~v---~~L~~G~s~tv~~~~~~----- 71 (106)
|...++++... .-..+..+.+.+.|+|--.... ......+|++|..+.+... ..|++.++.++.+.+..
T Consensus 45 Pev~v~~v~i~~vsl~~~tl~~~l~V~NPN~~~Lpi~~i~y~l~~~G~~lasG~~~~~~~Ipa~g~t~v~vpv~v~~~~L 124 (174)
T 1yyc_A 45 PEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIA 124 (174)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEESHHHH
T ss_pred CEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCCEECCCCCEEEEEEEEEEHHHH
T ss_conf 85899975820543220699999999997987700332799999999998730148874788998489999999889999
Q ss_pred -----CCCCC---CEEEEEEEC
Q ss_conf -----77789---648999975
Q T0541 72 -----DGTAN---SYTLTVNVD 85 (106)
Q Consensus 72 -----~~~~G---~~ti~v~vD 85 (106)
....+ .|.+...++
T Consensus 125 ~~l~~di~~~~~i~Y~l~g~L~ 146 (174)
T 1yyc_A 125 VSLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp HHTCCCCCSSEEECEEEEEEEE
T ss_pred HHHHHHHCCCCCCCEEEEEEEE
T ss_conf 9999860568973379999999
No 20
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=85.58 E-value=1.4 Score=21.08 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCC--C---EEEEEEECC----------EEE-----EEEECCCCCCCCEEEEEEEE
Q ss_conf 8899717999888855797568--6---389998399----------376-----62464773899648898864
Q T0541 15 VVPNTVNTMTATIENQGNKDST--S---FNVSLLVDG----------IVV-----DTQTVTSLESENSTNVDFHW 69 (106)
Q Consensus 15 ~~~g~~~tv~vtV~N~G~~~a~--~---~~v~~y~~g----------~~~-----~~~~v~~L~~G~s~tv~~~~ 69 (106)
-.+|..++++..|+|.|....+ . ..++|.-.. .++ .-..-..|+|||++++.+..
T Consensus 260 ~VPGR~l~~~~~VTN~g~~~v~lgEF~tA~vRFln~~v~~~~~~yp~~lla~~gL~v~d~~pI~PGETk~v~v~a 334 (382)
T 1yew_A 260 RVPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTA 334 (382)
T ss_dssp ESSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEE
T ss_pred ECCCCEEEEEEEEECCCCCCEEEEEEEECCEEEECCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCCCEEEEEEE
T ss_conf 347817999999974898746886565142677577655578999867846787150899875999624899996
No 21
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A
Probab=81.27 E-value=2.2 Score=20.00 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred CEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEE-EE------------EEC-CCCCCCCEEEEEEEE
Q ss_conf 6078660258788997179998888557975686389998399376-62------------464-773899648898864
Q T0541 4 DLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVV-DT------------QTV-TSLESENSTNVDFHW 69 (106)
Q Consensus 4 DL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~-~~------------~~v-~~L~~G~s~tv~~~~ 69 (106)
+|.|.---|-.+..|+++.+.++|.|...... ...|.+...+... .. ... -.++++++.++.|..
T Consensus 822 pf~v~~~LP~sv~rGEq~~i~v~V~N~~~~~~-~v~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~f~i 900 (1676)
T 3cu7_A 822 DVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGM-QFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSSHLVTFTV 900 (1676)
T ss_dssp SEEEEEECCSCEETTCCEEEEEEEEECSSSCB-CCCCEECCCTTEECSSCC----------CCCCCCBCTTEEEECCEEE
T ss_pred CEEEEECCCCEEECCCEEEEEEEEEECCCCCE-EEEEEEEECCCEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58997048843206977999999994578760-69999994586420456443344666425899997699718999850
Q ss_pred EECCCCCCEEEEEEEC
Q ss_conf 2177789648999975
Q T0541 70 TLDGTANSYTLTVNVD 85 (106)
Q Consensus 70 ~~~~~~G~~ti~v~vD 85 (106)
.+. ..|.+.+++.+.
T Consensus 901 ~p~-~~G~~~i~v~A~ 915 (1676)
T 3cu7_A 901 LPL-EIGLHNINFSLE 915 (1676)
T ss_dssp EEC-SSSCCCEEEEEE
T ss_pred CCC-CCCEEEEEEEEE
T ss_conf 367-676089999998
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=78.14 E-value=2.8 Score=19.45 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=43.6
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEE-----------EEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 07866025878899717999888855797568638999839937-----------6624647738996488988642177
Q T0541 5 LVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV-----------VDTQTVTSLESENSTNVDFHWTLDG 73 (106)
Q Consensus 5 L~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~-----------~~~~~v~~L~~G~s~tv~~~~~~~~ 73 (106)
|.+.-.-|..+..|+.+.+.++|.|...... ...+.+...+.. -.+..+ .++++++.++.|...+.
T Consensus 666 ~~v~~~lP~~v~~GD~~~i~v~v~N~~~~~~-~v~v~l~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~v~f~v~~~- 742 (1325)
T 2pn5_A 666 FYIVENLPYSIKRGEAVVLQFTLFNNLGAEY-IADVTLYNVANQTEFVGRPNTDLSYTKSV-SVPPKVGVPISFLIKAR- 742 (1325)
T ss_dssp EEEEEECCSEEETTCEEEEEEEEEECSSSCE-EEEEEEECGGGCEEETTSCTTCCEEEEEE-EECTTCCEEEEEEEEEC-
T ss_pred EEEECCCCCEEECCCEEEEEEEEECCCCCCE-EEEEEEEECCCCEEEECCCCCCCCEEEEE-EECCCCCEEEEEEEEEC-
T ss_conf 7996268974605988999999974778757-99999994688225503446677446999-98789837999999607-
Q ss_pred CCCCEEEEEEE
Q ss_conf 78964899997
Q T0541 74 TANSYTLTVNV 84 (106)
Q Consensus 74 ~~G~~ti~v~v 84 (106)
..|...+++.+
T Consensus 743 ~~G~~~i~v~a 753 (1325)
T 2pn5_A 743 KLGEMAVRVKA 753 (1325)
T ss_dssp SSEEEEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 66549999999
No 23
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=78.10 E-value=2.8 Score=19.44 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=44.9
Q ss_pred EEEE-CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEE---EEECCCCCCCCEEEEEEEEEECCCCCCEEEEEE
Q ss_conf 6602-587889971799988885579756863899983993766---246477389964889886421777896489999
Q T0541 8 VSLT-PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVD---TQTVTSLESENSTNVDFHWTLDGTANSYTLTVN 83 (106)
Q Consensus 8 ~~i~-p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~---~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~ 83 (106)
.+++ |.+...|+.+.++++|.|.=..... ..+.+-.+..... .....-|.+++..++.|...+ .|...|++.
T Consensus 10 ~~l~lPysv~rge~~~v~~~V~Nyl~~~~~-v~v~L~~s~~~~~~~~~~~t~cvc~~~~~t~~w~i~~---~g~vnitv~ 85 (118)
T 2icn_B 10 KNFDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYT---NRTVQIAAV 85 (118)
T ss_dssp ECCCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCCGGGGCEEEEEECSSSCEEEEEEECC---SSCEEEEEE
T ss_pred EEECCCCEEECCCEEEEEEEEEECCCCCEE-EEEEEECCCCEECCCCCCCCEEECCCCCEEEEEEEEE---CCCEEEEEE
T ss_conf 992389568459889999999975563289-9999825878782477765579569995689999996---685869999
Q ss_pred ECC
Q ss_conf 759
Q T0541 84 VDP 86 (106)
Q Consensus 84 vD~ 86 (106)
+..
T Consensus 86 Aea 88 (118)
T 2icn_B 86 VDV 88 (118)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 998
No 24
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.78 E-value=2 Score=20.22 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=48.8
Q ss_pred CCEEEEE--EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCE----EEE-EEECCCCCCCCEEEEEEEEEECCCC
Q ss_conf 8607866--02587889971799988885579756863899983993----766-2464773899648898864217778
Q T0541 3 PDLVPVS--LTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGI----VVD-TQTVTSLESENSTNVDFHWTLDGTA 75 (106)
Q Consensus 3 PDL~v~~--i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~----~~~-~~~v~~L~~G~s~tv~~~~~~~~~~ 75 (106)
|++..+. +.-.....|+..+-++.++|.|...+. |. +..... ... .-.-+.|+||++..+.+.+.+. ..
T Consensus 8 P~v~~~~~~idFG~i~~g~~~~~~i~l~N~~~~p~~-f~--~~~~~~~~~~~f~i~p~~G~I~p~~~~~i~v~f~p~-~~ 83 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDAL-FN--MTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI-IL 83 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEE-EE--ECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC-CC
T ss_pred CEEEEECCEEEECCEECCCEEEEEEEEECCCCCCEE-EE--EEECCCCCCCEEEEECCEEEECCCCEEEEEEEEECC-CC
T ss_conf 999981798971437869999999999939988889-99--873156779719999998899999989999999939-98
Q ss_pred CCEEEEEEEC
Q ss_conf 9648999975
Q T0541 76 NSYTLTVNVD 85 (106)
Q Consensus 76 G~~ti~v~vD 85 (106)
|.|...+.+.
T Consensus 84 g~~~~~i~~~ 93 (112)
T 2e6j_A 84 GNFEEEFLVN 93 (112)
T ss_dssp EEEEEEECEE
T ss_pred EEEEEEEEEE
T ss_conf 8299999999
No 25
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A*
Probab=75.20 E-value=3.4 Score=19.00 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=46.3
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCC-EEEEEEE-CCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 8788997179998888557975686-3899983-9937662464773899648898864217778964899997599
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTS-FNVSLLV-DGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~-~~v~~y~-~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~vD~~ 87 (106)
+--.||+.+.+++-+.+........ ..+.+.. +|..+..+.............+|.++.....|.|+|.+..+..
T Consensus 115 piYrPGqtV~~r~~~~d~~~~p~~~~~~v~i~~p~g~~v~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~~ 191 (645)
T 2hr0_A 115 TIYTPGSTVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENS 191 (645)
T ss_dssp SBCCTTSEEEEEEEEECTTSCBCCCEEEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCEEEEEEEEECCC
T ss_conf 77389999999999976767257873599999799989997684036877368887506886784659999996898
No 26
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=75.04 E-value=2.3 Score=19.91 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=33.2
Q ss_pred EEEEEEEEECCCCCCCC--EEEEEEEC----------------------CEEEEEEECCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 79998888557975686--38999839----------------------9376624647738996488988642177789
Q T0541 21 NTMTATIENQGNKDSTS--FNVSLLVD----------------------GIVVDTQTVTSLESENSTNVDFHWTLDGTAN 76 (106)
Q Consensus 21 ~tv~vtV~N~G~~~a~~--~~v~~y~~----------------------g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G 76 (106)
-+++++++|.|...-.. ....+.-. ...-.-.....|.||++.+++|+.+-...+|
T Consensus 27 e~v~~~~~N~g~lph~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~via~t~~l~pGe~~~l~f~~p~~~~~G 106 (128)
T 1nwp_A 27 KTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGE 106 (128)
T ss_dssp SEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTS
T ss_pred CEEEEEEECCCCCCEEEEEECHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC
T ss_conf 58999998689774027761500026135799999987630014789988731247740006898258999802688898
Q ss_pred CEEEE
Q ss_conf 64899
Q T0541 77 SYTLT 81 (106)
Q Consensus 77 ~~ti~ 81 (106)
.|.+.
T Consensus 107 ~Y~f~ 111 (128)
T 1nwp_A 107 KYGFF 111 (128)
T ss_dssp CEEEE
T ss_pred CEEEE
T ss_conf 48999
No 27
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprotein, transmembrane; HET: NAG; 2.0A {Homo sapiens}
Probab=73.21 E-value=3.5 Score=18.97 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=22.0
Q ss_pred EEEEEE-ECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEE
Q ss_conf 078660-258788997179998888557975686389998399376
Q T0541 5 LVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVV 49 (106)
Q Consensus 5 L~v~~i-~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~ 49 (106)
|..... +|.....|+.+.+...+. |. +...+.||.+|..+
T Consensus 3 ~~~~~~~~p~~~~~G~~v~l~C~~~--g~---p~~~v~W~~~~~~l 43 (189)
T 2v5t_A 3 LTFREVVSPQEFKQGEDAEVVCRVS--SS---PAPAVSWLYHNEEV 43 (189)
T ss_dssp CEEEECCSSEEEETTSCEEECCEEE--CS---SCCEEEEEC-----
T ss_pred EEEEECCCCCEECCCCCEEEEEEEE--EE---CCCEEEEEECCEEC
T ss_conf 7998339983989999899999994--60---79889999999980
No 28
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=70.76 E-value=4.4 Score=18.42 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECC-EEEEEEE------------------CCCCCCCCEEEEEEEEE
Q ss_conf 97179998888557975686389998399-3766246------------------47738996488988642
Q T0541 18 NTVNTMTATIENQGNKDSTSFNVSLLVDG-IVVDTQT------------------VTSLESENSTNVDFHWT 70 (106)
Q Consensus 18 g~~~tv~vtV~N~G~~~a~~~~v~~y~~g-~~~~~~~------------------v~~L~~G~s~tv~~~~~ 70 (106)
+..+...++|+|.|..+.....+.|-+.+ ..+.... ...|+||++.++.|...
T Consensus 18 ~~Gf~~~vtVtN~~~~~~~gW~v~~~~p~g~~i~~~Wna~~s~~g~~~tvt~~~wN~~i~~G~s~~fGf~~~ 89 (110)
T 1exg_A 18 NTGFTANVTVKNTSSAPVDGWTLTFSFPSGQQVTQAWSSTVTQSGSAVTVRNAPWNGSIPAGGTAQFGFNGS 89 (110)
T ss_dssp SSEEEEEEEEEECSSSCEESEEEEEECSSSCEEEEEESSEEEEETTEEEEEECSGGGEECSSEEEEEEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf 997289999994999854677999996899898500076897048879995686367429998889979985
No 29
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=69.39 E-value=4.7 Score=18.25 Aligned_cols=98 Identities=12% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCCEEEEEE-E--CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEE--------------------------EEEE
Q ss_conf 986078660-2--5878899717999888855797568638999839937--------------------------6624
Q T0541 2 IPDLVPVSL-T--PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV--------------------------VDTQ 52 (106)
Q Consensus 2 lPDL~v~~i-~--p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~--------------------------~~~~ 52 (106)
.|||.+... . |-..-....+.+.++|+|.|. .|....+.+.....+ ....
T Consensus 609 ~~dL~l~~~~~~~~l~vg~~~~l~l~v~v~N~GE-~Ay~t~l~v~~p~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C 687 (959)
T 3fcs_A 609 VPQLQLTASVTGSPLLVGADNVLELQMDAANEGE-GAYEAELAVHLPQGAHYMRALSNVEGFERLICNQKKENETRVVLC 687 (959)
T ss_dssp CCCEEEEEEEESCSEETTSCCCEEEEEEEEECSS-CBTTEEEEEECCTTEEEEEEEECC--CCBCCEEEECSSSSCEEEE
T ss_pred CCCEEEEEECCCCCEEEECCCEEEEEEEEEECCC-CCEEEEEEEECCCCCCEEEEECCCCCCCCEECCCCCCCCCEEEEE
T ss_conf 1241799962774189817878999999898998-855379999839987457665056666630013557887079995
Q ss_pred EC-CCCCCCCEEEEEEEEEECC-C--CCCEEEEEEECCCCCEEECCCCCCEEEEE
Q ss_conf 64-7738996488988642177-7--89648999975999584121788558888
Q T0541 53 TV-TSLESENSTNVDFHWTLDG-T--ANSYTLTVNVDPENAVNEGNESNNTLTAL 103 (106)
Q Consensus 53 ~v-~~L~~G~s~tv~~~~~~~~-~--~G~~ti~v~vD~~n~v~E~~e~NN~~t~~ 103 (106)
.+ .+|..++..++.+.|.... . .....|.+.+-..+. .+..+|.....
T Consensus 688 ~lgnP~~~~~~~~~~~~f~~~~l~~~~~~l~~~~~~~s~n~---~~~~~n~~~~~ 739 (959)
T 3fcs_A 688 ELGNPMKKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNS---QNPNSKIVLLD 739 (959)
T ss_dssp EEETTBCTTEEEEEEEEEEECCCTTCCSEEEEEEEEECCCS---SSCSCCCEEEE
T ss_pred CCCCHHHCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCC---CCCCCCEEEEE
T ss_conf 18894317973899999965533677746999999998778---89777508999
No 30
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesion, immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=67.68 E-value=5.2 Score=18.06 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=47.5
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCC---CCCEEEEEEEEEECCCCCCEEEEEEECC
Q ss_conf 58788997179998888557975686389998399376624647738---9964889886421777896489999759
Q T0541 12 PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLE---SENSTNVDFHWTLDGTANSYTLTVNVDP 86 (106)
Q Consensus 12 p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~---~G~s~tv~~~~~~~~~~G~~ti~v~vD~ 86 (106)
+.....|+.+++...+. |........+.||.+|..+......... .+.+.++.+.......+|.|+-.|..+-
T Consensus 98 ~~~~~~g~~~~L~C~v~--~~~P~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~ytC~A~~~l 173 (196)
T 3bn3_B 98 PPWQPVGENFTLSCRVP--GAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173 (196)
T ss_dssp CSSEETTSEEEEEEEET--TCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEEC
T ss_pred CEEEECCCEEEEEEEEC--CCCCCCCEEEEECCCCEEECCCCCCCEEEECCCCEEEEEEECCCHHCCCEEEEEEEECC
T ss_conf 45995898799999965--88998204899906998940544441435247726999997450880988999999846
No 31
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 2b59_B
Probab=65.18 E-value=5.8 Score=17.79 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 8607866025878899717999888855797568638999839
Q T0541 3 PDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVD 45 (106)
Q Consensus 3 PDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~ 45 (106)
|+-+-..+-.....+|+.+++.+.+.|.+......+...+..|
T Consensus 6 p~~~~~~ig~~~~~~Gd~v~v~v~i~nv~~~~v~~~~f~i~yD 48 (321)
T 3kcp_A 6 PNKLTLKIGRAEGRPGDTVEIPVNLYGVPQKGIASGDFVVSYD 48 (321)
T ss_dssp --CCEEEECEEEECTTCEEEEEEEEESCCTTCBCEEEEEEECC
T ss_pred CCCEEEEECCEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 7716999785753499889999999843777567789999976
No 32
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens}
Probab=63.07 E-value=6.4 Score=17.57 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCEEEEEEE-CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEE
Q ss_conf 9860786602-5878899717999888855797568638999839937662
Q T0541 2 IPDLVPVSLT-PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDT 51 (106)
Q Consensus 2 lPDL~v~~i~-p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~ 51 (106)
+|.|.+..-+ -.....|+.+++...+. |. +...|.||-||..+..
T Consensus 2 ~p~~~~~~~~~~~~~~eG~~v~l~C~v~--g~---P~~~v~W~k~g~~l~~ 47 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRAS--GS---PEPAISWFRNGKLIEE 47 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEE--CS---SCCEEEEEETTEECCC
T ss_pred CCEEECCCCCCCEEECCCCCEEEEEEEE--EE---CCCEEEEEECCEECCC
T ss_conf 8709336888866996599499999998--70---6998999899999989
No 33
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding protein; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=63.04 E-value=6.4 Score=17.57 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=48.0
Q ss_pred EEEEEE--ECCCCCCCCEEEEEEEEEECCCCCCC---CEEEEEEECCEEEEE---------E------------------
Q ss_conf 078660--25878899717999888855797568---638999839937662---------4------------------
Q T0541 5 LVPVSL--TPVTVVPNTVNTMTATIENQGNKDST---SFNVSLLVDGIVVDT---------Q------------------ 52 (106)
Q Consensus 5 L~v~~i--~p~~~~~g~~~tv~vtV~N~G~~~a~---~~~v~~y~~g~~~~~---------~------------------ 52 (106)
+.+.++ +|..+..|+.+++++...=.-..... ...|...+.+.++.. .
T Consensus 17 ~~i~~v~l~PdP~~~g~~lt~~~~~~~~~~i~~g~~v~l~v~~~~~~~wi~ipC~~~~GsC~y~d~C~~~~~~~~~~~~c 96 (164)
T 2ag4_A 17 AVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPC 96 (164)
T ss_dssp EEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEECCHHHHHHHHSCTTSCC
T ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 58826898779917895699999999816628885999999995030799854432556554210223243125456657
Q ss_pred -------E---CCCCCCCCEEEE--EE-----EEEECCCCCCEEEEEEECCCCC
Q ss_conf -------6---477389964889--88-----6421777896489999759995
Q T0541 53 -------T---VTSLESENSTNV--DF-----HWTLDGTANSYTLTVNVDPENA 89 (106)
Q Consensus 53 -------~---v~~L~~G~s~tv--~~-----~~~~~~~~G~~ti~v~vD~~n~ 89 (106)
. .=++++|...-- .+ .++...+.|+|++.+.++.++.
T Consensus 97 ~~~~~~~~~~~~CPi~~G~y~l~~~~~~~p~v~LP~~lp~G~Y~v~~~~~~~g~ 150 (164)
T 2ag4_A 97 PEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGK 150 (164)
T ss_dssp CTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEEEETTE
T ss_pred CCHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 422212697335876887878002311167654667249966999999947996
No 34
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=62.13 E-value=6.7 Score=17.47 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCEEEEEEEEEE------CCCCCCEEEEEEE-CCCCC
Q ss_conf 6863899983-993766246477389964889886421------7778964899997-59995
Q T0541 35 STSFNVSLLV-DGIVVDTQTVTSLESENSTNVDFHWTL------DGTANSYTLTVNV-DPENA 89 (106)
Q Consensus 35 a~~~~v~~y~-~g~~~~~~~v~~L~~G~s~tv~~~~~~------~~~~G~~ti~v~v-D~~n~ 89 (106)
+....+.+|. +|..+.+.....+.+|. ..|.|.. ..++|.|+|.+.+ |.++.
T Consensus 38 a~~v~v~I~d~~G~~V~~~~~g~~~~G~---~~f~WDG~d~~G~~~~~G~Y~v~v~a~~~~g~ 97 (138)
T 3c12_A 38 AGFVNFEITDANGTFVKQLSVPASAAGE---VSFAWDGTDANGNRMAAGKYGITATQTDTAGA 97 (138)
T ss_dssp SEEEEEEEECSSCCEEEEEEEEESSSEE---EEEEECSBCTTSCBCCSEEEEEEEEEEETTCC
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCE---EEEEEECCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 8788999991999899998438757855---99998164578983899768999999958998
No 35
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=59.93 E-value=7.4 Score=17.26 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=40.6
Q ss_pred CCCCCCEE-EEEEEEEECCCCCCC--CEEEEEEE-CCEEEEEE----------ECCCCCCCCEEEEEEEEEECC-CCCCE
Q ss_conf 78899717-999888855797568--63899983-99376624----------647738996488988642177-78964
Q T0541 14 TVVPNTVN-TMTATIENQGNKDST--SFNVSLLV-DGIVVDTQ----------TVTSLESENSTNVDFHWTLDG-TANSY 78 (106)
Q Consensus 14 ~~~~g~~~-tv~vtV~N~G~~~a~--~~~v~~y~-~g~~~~~~----------~v~~L~~G~s~tv~~~~~~~~-~~G~~ 78 (106)
.+..|..+ .+.++|+|.|..... +..-.++. +|...... ....|+||++.+-.+.+..+. ....|
T Consensus 41 ~p~~G~~fviV~vtV~N~g~e~~~~~~~~F~L~d~dg~~y~~~~~~~~~~~~l~~g~L~pG~kvtG~ivFeVPkgd~k~y 120 (159)
T 3cfu_A 41 TIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQKHY 120 (159)
T ss_dssp CBCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEEEEEEEEEESTTCGGGC
T ss_pred CCCCCCEEEEEEEEEEECCCCCEEECCCEEEEEECCCCEECCEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEE
T ss_conf 78899999999999997887856707651899908998962217521467604225767999899999999779997207
Q ss_pred EEEE
Q ss_conf 8999
Q T0541 79 TLTV 82 (106)
Q Consensus 79 ti~v 82 (106)
.+..
T Consensus 121 ~l~y 124 (159)
T 3cfu_A 121 TLVY 124 (159)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
No 36
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembrane, repeat, signal; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=57.34 E-value=8.2 Score=17.02 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCC-CEEEEEEEEEE--CCCCCCEE
Q ss_conf 8607866025878899717999888855797568638999839937662464773899-64889886421--77789648
Q T0541 3 PDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESE-NSTNVDFHWTL--DGTANSYT 79 (106)
Q Consensus 3 PDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~~G-~s~tv~~~~~~--~~~~G~~t 79 (106)
|+.......+.....|+.+++...+. |..+.....+.||-+|..+........... ...+..+.+.+ ...+|.|+
T Consensus 88 P~~~~i~~~~~~v~~G~~~~l~C~~~--~~~P~~~~ti~W~k~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~d~gg~Y~ 165 (192)
T 1zxq_A 88 PRQVILTLQPTLVAVGKSFTIECRVP--TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS 165 (192)
T ss_dssp CCCCEEEEESSEECTTSEEEEEEEEC--SCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEE
T ss_pred CCEEEECCCCEEEECCCEEEEEEECC--CCCCCCCEEEEEEECCCEEEECCCCCEECCCCCCEEEEEEECCCHHCCCEEE
T ss_conf 11349818983897999899999756--8999852579993088076002311200247732699987415010898999
Q ss_pred EEEEECC
Q ss_conf 9999759
Q T0541 80 LTVNVDP 86 (106)
Q Consensus 80 i~v~vD~ 86 (106)
-.|.-+-
T Consensus 166 C~A~~~l 172 (192)
T 1zxq_A 166 CLAVLDL 172 (192)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
T ss_conf 9999677
No 37
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 2z65_C*
Probab=52.82 E-value=9.8 Score=16.61 Aligned_cols=80 Identities=9% Similarity=0.196 Sum_probs=51.7
Q ss_pred EEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE--C----------CCCCCCCEEEEEEEEEEC---
Q ss_conf 6602587889971799988885579756863899983993766246--4----------773899648898864217---
Q T0541 8 VSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT--V----------TSLESENSTNVDFHWTLD--- 72 (106)
Q Consensus 8 ~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~--v----------~~L~~G~s~tv~~~~~~~--- 72 (106)
.+++|-.+..|..+++.+...=.......-+.+.+.++|..+-... + =++..|+....+.++..+
T Consensus 30 v~i~PC~~~kG~~~~i~i~f~~~~di~~l~~~v~v~~~gi~vp~~~~dlC~~~~~~~~~CP~~kGe~~~~~~~~~ip~~~ 109 (144)
T 2e56_A 30 INVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFSFKGIK 109 (144)
T ss_dssp EEEESCCCTTCEEEEEEEEECCSSCCTTCEEEEEEEETTEECCCEEEECSCSSSSSCGGGGCCTTCCEEEEEEEEECCCT
T ss_pred EEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 87067874679708999999988611124799999999998746777777455667553787789359998776066401
Q ss_pred CCCCCEEEEEE-ECCC
Q ss_conf 77896489999-7599
Q T0541 73 GTANSYTLTVN-VDPE 87 (106)
Q Consensus 73 ~~~G~~ti~v~-vD~~ 87 (106)
.+.|.|++.+. .+.+
T Consensus 110 ~P~G~y~v~~~~~~~d 125 (144)
T 2e56_A 110 FSKGKYKCVVEAISGS 125 (144)
T ss_dssp TCCSEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEECC
T ss_conf 6884379999999589
No 38
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell signaling, alternative splicing, calcium, cell adhesion; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=49.60 E-value=11 Score=16.32 Aligned_cols=96 Identities=8% Similarity=0.105 Sum_probs=52.5
Q ss_pred CCCEEEEEEE-CCC--CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEE--------------------------EEEE
Q ss_conf 9860786602-587--8899717999888855797568638999839937--------------------------6624
Q T0541 2 IPDLVPVSLT-PVT--VVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV--------------------------VDTQ 52 (106)
Q Consensus 2 lPDL~v~~i~-p~~--~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~--------------------------~~~~ 52 (106)
.|||.+..-. .+. .-....+.+.++|+|.|. .|....+.+.....+ ....
T Consensus 603 ~~dL~l~~~~~~~~l~~g~~~~l~l~v~v~N~GE-~Ay~t~l~v~~p~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~v~C 681 (967)
T 3ije_A 603 KPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGE-GAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVC 681 (967)
T ss_dssp CCCEEEEEECSSCEEETTSCEEEEEEEEEEECSS-CEESCEEEEECCTTEEEEEECCSCTTSBCCEEEEECSSSCCEEEE
T ss_pred CCCEEEEECCCCCEEEECCCCEEEEEEEEEECCC-CCEEEEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCCCEEEEE
T ss_conf 2243899937887799678978999999997997-741369999848876622121357767641561454778258992
Q ss_pred ECC-CCCCCCEEEEEEEEEECC-C-CC-CEEEEEEECCCCCEEECCCCCCEEE
Q ss_conf 647-738996488988642177-7-89-6489999759995841217885588
Q T0541 53 TVT-SLESENSTNVDFHWTLDG-T-AN-SYTLTVNVDPENAVNEGNESNNTLT 101 (106)
Q Consensus 53 ~v~-~L~~G~s~tv~~~~~~~~-~-~G-~~ti~v~vD~~n~v~E~~e~NN~~t 101 (106)
.++ +|.+++..+..+.+.... . .+ ...|.+.+-..+ |.++.+|..+
T Consensus 682 ~lgnP~~~~~~~~f~l~f~~~~~~~~~~~l~~~~~~~s~n---~~~~~~n~~~ 731 (967)
T 3ije_A 682 DLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSN---LFDKVSPVVS 731 (967)
T ss_dssp ECCSEECTTCEEEEEEEEEECCCSCCCSEEEEEEEEECSC---SSSCBCCCEE
T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEECC---CCCCCCCCEE
T ss_conf 4799135897578999998553456872499999963068---8887786157
No 39
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=49.53 E-value=10 Score=16.47 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=27.0
Q ss_pred EEEEEEEECCCCCCCCEEEEEEE----------CCEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 99988885579756863899983----------99376624647738996488988642
Q T0541 22 TMTATIENQGNKDSTSFNVSLLV----------DGIVVDTQTVTSLESENSTNVDFHWT 70 (106)
Q Consensus 22 tv~vtV~N~G~~~a~~~~v~~y~----------~g~~~~~~~v~~L~~G~s~tv~~~~~ 70 (106)
++.++++|.......-....+.. ||.......-..++||++.+.+|..+
T Consensus 69 ~v~V~~~N~~~~p~siH~HGv~~~~~~~g~~~~Dg~~~~~~~~~~I~PG~t~tY~f~v~ 127 (306)
T 1sdd_A 69 IMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIIS 127 (306)
T ss_dssp EEEEEEEECSSSCBCCEEESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECC
T ss_pred EEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEC
T ss_conf 99999998999970360446555665576766678988763575666999899999825
No 40
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.56 E-value=9.6 Score=16.66 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE-CCCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 7889971799988885579756863899983993766246-47738996488988642177789648999
Q T0541 14 TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT-VTSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 14 ~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~-v~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
....|+.+.|.+.+. + ...+.||.+|..+.... .....-+...++.+.-.-..-.|.|+..+
T Consensus 18 ~v~~G~~~~l~c~vs--~-----~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 80 (100)
T 2yuz_A 18 TVNLGKEICLKCEIS--E-----NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp EEETTSCCCEEEECS--S-----CCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEE
T ss_pred EEECCCCEEEEEEEC--C-----CCCEEEEECCEECCCCCCEEEEECCCEEEEEECCCCCEECEEEEEEE
T ss_conf 992999199999988--8-----99689999999558987604541076079998899831278999998
No 41
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=47.16 E-value=12 Score=16.11 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=31.3
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEECCE------------------------EEEEEECCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 799988885579756863899983993------------------------76624647738996488988642177789
Q T0541 21 NTMTATIENQGNKDSTSFNVSLLVDGI------------------------VVDTQTVTSLESENSTNVDFHWTLDGTAN 76 (106)
Q Consensus 21 ~tv~vtV~N~G~~~a~~~~v~~y~~g~------------------------~~~~~~v~~L~~G~s~tv~~~~~~~~~~G 76 (106)
-+++++++|.|...--++.+ .-.+. .........|.||++.++.|+. + .+|
T Consensus 43 ~~V~~~~~N~~~~~~Hn~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~pg~s~~~~f~~--~-~pG 117 (139)
T 2aan_A 43 QTVTIRFKNNSAVQQHNWIL--VKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFTA--P-AAG 117 (139)
T ss_dssp CEEEEEEECCCSSCCBCCEE--ESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEEC--C-SSE
T ss_pred CEEEEEEEECCCCCCEEEEE--ECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEC--C-CCE
T ss_conf 98999998089754217886--057652035667765420410145433443200013345675217999957--9-985
Q ss_pred CEEEEE
Q ss_conf 648999
Q T0541 77 SYTLTV 82 (106)
Q Consensus 77 ~~ti~v 82 (106)
+|.+.-
T Consensus 118 ~Y~f~C 123 (139)
T 2aan_A 118 TYLYIC 123 (139)
T ss_dssp EEEEEC
T ss_pred EEEEEE
T ss_conf 799997
No 42
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=45.43 E-value=13 Score=15.97 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=22.8
Q ss_pred EEEEEEEECCCCCCCCEEEE----------EEECCEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 99988885579756863899----------98399376624647738996488988642
Q T0541 22 TMTATIENQGNKDSTSFNVS----------LLVDGIVVDTQTVTSLESENSTNVDFHWT 70 (106)
Q Consensus 22 tv~vtV~N~G~~~a~~~~v~----------~y~~g~~~~~~~v~~L~~G~s~tv~~~~~ 70 (106)
+|.++++|.......=.... .|.++..........++||++.+.+|..+
T Consensus 78 ~i~V~~~N~~~~p~SIH~HGv~~~~~~dG~~~~d~~~~~~~~~~~V~PGet~tY~~~v~ 136 (647)
T 1sdd_B 78 VIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHAT 136 (647)
T ss_dssp EEEEEECCCSSSCBCCEEETCC---------------------CCBCTTCCEECCEECC
T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 99999998999966473155664654468634578886556676278898299999931
No 43
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A
Probab=45.04 E-value=13 Score=15.93 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=37.5
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECC-CCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 8788997179998888557975686389998399376624647-738996488988642177789648999
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVT-SLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~-~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
.....|+.+.|...+. . +...+.||-||..+....-- ...-|...++.+.-.-..-.|.|+..+
T Consensus 15 ~~v~eG~~~~~~c~v~---~---p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~c~a 79 (93)
T 1waa_A 15 VEVFVGETAHFEIELS---E---PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp EEEETTSCEEEEEEES---S---SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEECCCCEEEEEEEC---C---CCCEEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCHHCCEEEEEEE
T ss_conf 7996899499999989---9---880799997210235755077640253479999689811379999998
No 44
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.16 E-value=14 Score=15.86 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECC-CCCCCCEEEEEEEEEECCCCCCEEEEEE
Q ss_conf 8788997179998888557975686389998399376624647-7389964889886421777896489999
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVT-SLESENSTNVDFHWTLDGTANSYTLTVN 83 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~-~L~~G~s~tv~~~~~~~~~~G~~ti~v~ 83 (106)
.....|+.+.|.+.|. | ....+.||.+|..+....-. ...-|...++.+.-.-..-.|.|+..+.
T Consensus 18 ~~v~~G~~~~l~C~v~--~----~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 83 (106)
T 2dlt_A 18 LTVKAAEQAVFKCEVS--D----EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83 (106)
T ss_dssp EEEESSCCEECCCEES--C----SSCEEEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred EEEECCCEEEEEEECC--C----CCCEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEE
T ss_conf 8990899899998723--5----8981999986401100111254111233799830342214589999996
No 45
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initiative, PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=41.38 E-value=15 Score=15.62 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=43.2
Q ss_pred EEEEEE--ECCCCC-CCCEEEEEEEEEECCCCCCC--CEEEEEEECCEEEEEEEC---CCCCCCCEEEEEEEEE
Q ss_conf 078660--258788-99717999888855797568--638999839937662464---7738996488988642
Q T0541 5 LVPVSL--TPVTVV-PNTVNTMTATIENQGNKDST--SFNVSLLVDGIVVDTQTV---TSLESENSTNVDFHWT 70 (106)
Q Consensus 5 L~v~~i--~p~~~~-~g~~~tv~vtV~N~G~~~a~--~~~v~~y~~g~~~~~~~v---~~L~~G~s~tv~~~~~ 70 (106)
|.|.++ .|.... ....+.+.+.|+|--..+.. +....+|++|..++.... ..++|+++.++.+++.
T Consensus 1 ~~v~~v~~~wg~vt~~~t~i~~~l~V~NPN~~~l~i~~~~y~l~~ng~~i~~G~~~~~~~ip~~~~~~v~v~~~ 74 (136)
T 3but_A 1 MSLESVKAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLR 74 (136)
T ss_dssp -CEEEEEEEECCCCSSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCEEECCEEEEEEECCEEEEEEECCCCCEECCCCCEEEEEEEE
T ss_conf 93888620302072645999999999898986754233699999999999977507862788999589999999
No 46
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=39.06 E-value=17 Score=15.42 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=28.6
Q ss_pred EEEEEEECCEEEEEEECCCCCCC-CEEEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 38999839937662464773899-6488988642177789648999975999
Q T0541 38 FNVSLLVDGIVVDTQTVTSLESE-NSTNVDFHWTLDGTANSYTLTVNVDPEN 88 (106)
Q Consensus 38 ~~v~~y~~g~~~~~~~v~~L~~G-~s~tv~~~~~~~~~~G~~ti~v~vD~~n 88 (106)
..+.+++||..+....++.-..- .-.++.+.. ....|.++|++.....+
T Consensus 67 ~~~~l~VnG~~~~~~~~~~Tg~w~~w~t~~~~v--~L~aG~ntI~l~~~~~~ 116 (145)
T 2w3j_A 67 RRATVVVNDSQIKTLDFPTNSNWTQWQTVNVDI--PLKAGTNSIKLVAETAD 116 (145)
T ss_dssp CCEEEEETTEEEEEECCCCCSCTTSCEEEEEEE--EECSEEEEEEEEECSTT
T ss_pred EEEEEECCCCEEEEEEEECCCCCCCEEEEEEEE--EECCCCEEEEEEEECCC
T ss_conf 069998699398899974178976229999999--97997149999997787
No 47
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=38.84 E-value=17 Score=15.40 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=39.6
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE-CCCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 7889971799988885579756863899983993766246-47738996488988642177789648999
Q T0541 14 TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT-VTSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 14 ~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~-v~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
.+..|+.+.+.+.|.+ +...+.||-+|..+.... .....-+...++.+.-.-..-.|.|+..+
T Consensus 19 ~V~~G~~v~l~c~v~~------p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a 82 (100)
T 2yuv_A 19 QVDKGGRVRFVVELAD------PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp EECTTEEEEEEEEESC------TTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred EECCCCCEEEEEEECC------CCEEEEEEECCEECCCCCCEEEEECCCCEEEECCCCCCCCCEEEEEEE
T ss_conf 9967992999999799------985999999999124788724874398178603687200588999998
No 48
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=36.37 E-value=18 Score=15.18 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=20.3
Q ss_pred EEEEEEEECCCCCCCCEEEEEEEC---CEEEE---EEEC-CCCCCCCEEEEEEEEEE
Q ss_conf 999888855797568638999839---93766---2464-77389964889886421
Q T0541 22 TMTATIENQGNKDSTSFNVSLLVD---GIVVD---TQTV-TSLESENSTNVDFHWTL 71 (106)
Q Consensus 22 tv~vtV~N~G~~~a~~~~v~~y~~---g~~~~---~~~v-~~L~~G~s~tv~~~~~~ 71 (106)
.+.++|+|.....+.++.+++.+. |..+. ...- =.|-|||++++++.+..
T Consensus 818 ~~~~~v~~~~~~~~~a~~~~l~~~~~~g~~v~p~~~sDNy~~L~PGE~~~v~i~~~~ 874 (1032)
T 2vzs_A 818 TTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWNDNAVSLWPGETTTLTAKYRT 874 (1032)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESSCSEEECTTCEEEEEEEEEG
T ss_pred EEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEECCCCCEEEEEEEECC
T ss_conf 235898603665330013455302567867466505266334279986999999546
No 49
>2wnx_A Glycoside hydrolase, family 9; cellulose degradation; 1.31A {Clostridium thermocellum} PDB: 2wo4_A 2wob_A
Probab=36.15 E-value=19 Score=15.16 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=28.4
Q ss_pred CEEEEEEECCCCCCCCEEEEEEEEEECCCCCCC--CEEEEEEE
Q ss_conf 607866025878899717999888855797568--63899983
Q T0541 4 DLVPVSLTPVTVVPNTVNTMTATIENQGNKDST--SFNVSLLV 44 (106)
Q Consensus 4 DL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~--~~~v~~y~ 44 (106)
+|.|.--.-..-.....+...+.|+|.|..+.. ...+|+|.
T Consensus 12 ~l~V~y~~~~~~~~~n~I~~~~~I~N~g~~pi~Lsdl~iRYyf 54 (170)
T 2wnx_A 12 SISVSYKCGVKDGTKNTIRATINIKNTGTTPVNLSDIKVRYWF 54 (170)
T ss_dssp CEEEEEEECCCCSSCCEEEEEEEEEECSSSCEEGGGEEEEEEE
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 7689998378888776681799999898887654645899999
No 50
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=31.77 E-value=22 Score=14.77 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred EEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 38999839937662464773899648898864217778964899997599
Q T0541 38 FNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (106)
Q Consensus 38 ~~v~~y~~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~vD~~ 87 (106)
-...+++||.......- .-+.-.+...+ .....|.++|++.....
T Consensus 63 ~~~~l~VNG~~~~~~~~---~~~~w~t~~~~--v~L~aG~ntI~i~~~~~ 107 (140)
T 2bgo_A 63 KVNTLVMDGTALSYAFA---EATVPVTYVQT--KTLSAGNHSFGVRVGSS 107 (140)
T ss_dssp EEEEEEETTEEEEEEEE---SCCSCEEEEEE--EEECSSCEEEEEECCSS
T ss_pred CEEEEEECCEEEEECCC---CCCCCEEEEEE--EEECCCCEEEEEEEECC
T ss_conf 11999999999125179---98742899999--99778867999999779
No 51
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural genomics, structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=31.33 E-value=19 Score=15.12 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 9986078660258788997179998888
Q T0541 1 MIPDLVPVSLTPVTVVPNTVNTMTATIE 28 (106)
Q Consensus 1 ~lPDL~v~~i~p~~~~~g~~~tv~vtV~ 28 (106)
+||.|.+.++.......|+.+++..+|.
T Consensus 2 ~~~~~~~~~~~~~~i~vGd~~~~~~tiT 29 (148)
T 3ir3_A 2 MLPVLTLQHFQHMHIKVGDRAELRRAFT 29 (148)
T ss_dssp ------------CCCCTTCEEEEEEECC
T ss_pred CCCCCCCCCCEECCCCCCCEEEEEEEEC
T ss_conf 8750621673713363897999999847
No 52
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=30.87 E-value=23 Score=14.68 Aligned_cols=63 Identities=8% Similarity=0.011 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEC-CCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 878899717999888855797568638999839937662464-7738996488988642177789648999
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTV-TSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v-~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
.....|+.+++.+.+. + .-.+.||.+|..+....- ....-|...++.+.-.-..-.|.|+..+
T Consensus 18 ~~v~~G~~v~l~C~v~--~-----~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 81 (108)
T 2dm7_A 18 KEASEGATATLQCELS--K-----VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC 81 (108)
T ss_dssp CEEETTSCEEEEEEBS--S-----SCCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE
T ss_pred EEEECCCEEEEEECCC--C-----CCEEEEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEECEEEEEEE
T ss_conf 8992999899986369--9-----97099999454344115799997653799872785480078999998
No 53
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.87 E-value=20 Score=15.03 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECC-CCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 88997179998888557975686389998399376624647-738996488988642177789648999
Q T0541 15 VVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVT-SLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 15 ~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~-~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
...|+.++|.+.+. | ....+.||-+|..+....-. ...-+...++.+.-.-..-.|.|+..+
T Consensus 22 v~~G~~v~l~C~v~--~----~~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 84 (104)
T 2e6p_A 22 FTTSERVVLTCELS--R----VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT 84 (104)
T ss_dssp EESSSCEECCEECS--S----TTCCCEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred EECCCCEEEEEECC--C----CCCCEEEEECCEECCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEE
T ss_conf 95799299998906--9----996599998999846866424750597268687799852578999998
No 54
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid binding protein; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=29.78 E-value=24 Score=14.58 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=51.2
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEE-------E--C-CCCCCCCEEEEEEEEEE--CCCCCCEE
Q ss_conf 58788997179998888557975686389998399376624-------6--4-77389964889886421--77789648
Q T0541 12 PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQ-------T--V-TSLESENSTNVDFHWTL--DGTANSYT 79 (106)
Q Consensus 12 p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~-------~--v-~~L~~G~s~tv~~~~~~--~~~~G~~t 79 (106)
|=.+..|+.+++.+...-.-........+...+.|..+-.- . + =+|.+|+..+.++++.. ..+.+.|+
T Consensus 27 PC~l~rG~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~ip~~~~~~d~C~~~~~CPl~~G~~~~y~~~~~I~~~~P~~~~~ 106 (130)
T 1nep_A 27 PCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVV 106 (130)
T ss_dssp SEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCSSEEE
T ss_pred CCEEECCCEEEEEEEEECCCCCCCEEEEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEE
T ss_conf 97234898789999998774432068999999918894167867433235874775389548999986704348956899
Q ss_pred EEEEE-CCCCC
Q ss_conf 99997-59995
Q T0541 80 LTVNV-DPENA 89 (106)
Q Consensus 80 i~v~v-D~~n~ 89 (106)
+.+.+ |..+.
T Consensus 107 v~~~L~d~~~~ 117 (130)
T 1nep_A 107 VEWELTDDKNQ 117 (130)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEECCCCC
T ss_conf 99999948999
No 55
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase, carbohydrate binding module, anhydrogalacturonic acid hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=29.53 E-value=24 Score=14.56 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=26.1
Q ss_pred EEEEEEECCEEEE-EEECCCCCCCC-EEEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 3899983993766-24647738996-488988642177789648999975999
Q T0541 38 FNVSLLVDGIVVD-TQTVTSLESEN-STNVDFHWTLDGTANSYTLTVNVDPEN 88 (106)
Q Consensus 38 ~~v~~y~~g~~~~-~~~v~~L~~G~-s~tv~~~~~~~~~~G~~ti~v~vD~~n 88 (106)
-.+.+++||..+. ....+.-...+ -.+.++.. ....|.++|++..+..+
T Consensus 68 ~~~~l~vng~~~~~~~~~~~Tg~w~~~~~~~~~v--~L~~G~ntI~l~~~~~~ 118 (144)
T 2w47_A 68 RPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVA--NLNQGNNVIRATAIASD 118 (144)
T ss_dssp CCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEE--EECSEEEEEEEEECSTT
T ss_pred EEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEE--EECCCCEEEEEEEECCC
T ss_conf 0699999991963158734679987039999999--98987279999997687
No 56
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.87 E-value=25 Score=14.49 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCC--CCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 78899717999888855797568638999839937662464773--8996488988642177789648999
Q T0541 14 TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSL--ESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 14 ~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L--~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
....|+.++|.+.+. |. ....+.||-+|..+....-..+ .-|....+.+.-.-..-.|.|+..+
T Consensus 24 ~v~~G~~~~l~C~v~--g~---p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 89 (115)
T 2cr6_A 24 DVQEGSSATFRCRIS--PA---NYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89 (115)
T ss_dssp EEETTSCEECCCEEE--ST---TCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred EEECCCEEEEEEEEC--CC---CCCEEEEEEEEEEEEEEEEEEEEECCCCCEEECCCCCCCCCCEEEEEEE
T ss_conf 994897299998734--89---9983999874200011000000001234123333321102578999998
No 57
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=27.86 E-value=26 Score=14.39 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=35.9
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEE------EC---CEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEE
Q ss_conf 88997179998888557975686389998------39---93766246477389964889886421777896489999
Q T0541 15 VVPNTVNTMTATIENQGNKDSTSFNVSLL------VD---GIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVN 83 (106)
Q Consensus 15 ~~~g~~~tv~vtV~N~G~~~a~~~~v~~y------~~---g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~ 83 (106)
+..|+ ++.++++|.+....-++.+... .+ ...........+.||++.+++|... ..+|.|.+.--
T Consensus 65 v~~Gd--tv~v~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~f~~~--~~pGty~YhCh 138 (154)
T 2cal_A 65 IPAGA--TVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWH--PTAGTYYYVCQ 138 (154)
T ss_dssp ECTTC--EEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEEC--CCSEEEEEECC
T ss_pred EECCC--EEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEC--CCCEEEEEECC
T ss_conf 85999--9999999199876451452505776333566666677664012426998589999857--99967999689
No 58
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=27.50 E-value=26 Score=14.36 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE--CCCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 7889971799988885579756863899983993766246--47738996488988642177789648999
Q T0541 14 TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT--VTSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 14 ~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~--v~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
.+..|+.+++.+.|. | +...+.||-+|..+.... .....-|....+.+.-.-..-.|.|+..+
T Consensus 27 ~v~~G~~v~l~C~v~--~----p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 91 (104)
T 1pd6_A 27 QVSKGHKIRLTVELA--D----HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91 (104)
T ss_dssp EEETTSCEEEEEECS--S----SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred EECCCCEEEEEEEEC--C----CCEEEEEEECCEECCCCCCEEEEEECCCEEEEECCCCCCEEEEEEEEEE
T ss_conf 988699299999989--9----9969999989998568775356882498679742787523418999998
No 59
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=27.38 E-value=27 Score=14.35 Aligned_cols=67 Identities=7% Similarity=0.019 Sum_probs=38.9
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEC--CCCCCCCEEEEEEEEEECCCCCCEEEEEEE
Q ss_conf 878899717999888855797568638999839937662464--773899648898864217778964899997
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTV--TSLESENSTNVDFHWTLDGTANSYTLTVNV 84 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v--~~L~~G~s~tv~~~~~~~~~~G~~ti~v~v 84 (106)
.....|+.+++.+.+.- .+...+.||.+|..+....- .....+....+.+.-.-....|.|+..+.=
T Consensus 15 ~~v~~G~~~~l~c~~~g-----~P~p~v~W~~~g~~i~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~a~N 83 (99)
T 1g1c_A 15 QTVGQGSDAHFRVRVVG-----KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEETTSCEEEEEEEEE-----ESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEECCCCCEEEEEEEEE-----CCCCEEEEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 89989994999999998-----0799999999310603553015788428956999960364688699999998
No 60
>2edh_A Obscurin; IG-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.65 E-value=27 Score=14.27 Aligned_cols=64 Identities=5% Similarity=-0.010 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE-CCCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 587889971799988885579756863899983993766246-47738996488988642177789648999
Q T0541 12 PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT-VTSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 12 p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~-v~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
......|+.+.|.+.+. |. ..|.||-||..+.... .....-|...++.+.-.-..-.|.|+..+
T Consensus 28 ~~~v~~g~~~~l~C~v~--~~-----p~v~W~k~g~~l~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 28 NEEATEGATAVLRCELS--KM-----APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp CCEECTTSCEEEEEEES--SC-----CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred CEEEECCCEEEEEEEEC--CC-----CCEEEEECCEECCCCCCEEEEEECCEEEEEECCCCHHHCEEEEEEE
T ss_conf 38992898099999988--99-----8769999989877888589965199999998999978889999998
No 61
>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A
Probab=25.10 E-value=29 Score=14.12 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=37.8
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 179998888557975686389998399376624647738996488988642177789648999975999
Q T0541 20 VNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPEN 88 (106)
Q Consensus 20 ~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~vD~~n 88 (106)
...+.+.+.+.. .....+.+.+||..+++..++.- |.-.+. ........|.|+|+++...++
T Consensus 280 ~ysi~~RvAS~~---~gg~~i~l~vdG~~vGt~~vp~T--GgWqtw--~t~V~l~aG~h~lrL~~tgd~ 341 (354)
T 2dck_A 280 NSSFSLRGASNN---SNMARVDLRIGGQNRGTFYFGDQ--YPAVYT--INNINHGIGNQLVELIVTADD 341 (354)
T ss_dssp EEEEEEEEEESS---SSCEEEEEEETTEEEEEEEECSS--SCEEEE--EEEEECCSEEEEEEEECCCCC
T ss_pred CEEEEEEEECCC---CCCEEEEEEECCEEEEEEEECCC--CCCCEE--EEEEECCCCEEEEEEEEECCC
T ss_conf 279999998068---99789999949999999997898--976337--998504674589999998799
No 62
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.06 E-value=25 Score=14.53 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEC-CCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 78899717999888855797568638999839937662464-7738996488988642177789648999
Q T0541 14 TVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTV-TSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 14 ~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v-~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
....|+.++|.+.+ +. +...+.||-+|..+....- ....-|...++.+.-.-..-.|.|+..+
T Consensus 19 ~v~~G~~~~l~C~v---~~---p~~~v~W~k~~~~l~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (103)
T 2dku_A 19 QVEEKGTAVFTCKT---EH---PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI 82 (103)
T ss_dssp EEETTSEEEEEEEC---SS---CCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEEC
T ss_pred EEECCCEEEEEEEC---CC---CCCEEEEEEEEECCCCEEEEEEEEECCEEEECCCCCCHHHCEEEEEEE
T ss_conf 99499989999880---58---997057886210122105789862001255334899766598999997
No 63
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=24.81 E-value=17 Score=15.35 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=23.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEEE-------------EEECCEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 71799988885579756863899-------------98399376624647738996488988642
Q T0541 19 TVNTMTATIENQGNKDSTSFNVS-------------LLVDGIVVDTQTVTSLESENSTNVDFHWT 70 (106)
Q Consensus 19 ~~~tv~vtV~N~G~~~a~~~~v~-------------~y~~g~~~~~~~v~~L~~G~s~tv~~~~~ 70 (106)
..=+|.+.|+|.-... +.+. .|.||..-.++...+++||++.+.+|...
T Consensus 81 ~GD~v~v~~~N~l~~~---~siH~HG~~~~~~~~G~~~~dg~~~~~q~~~~I~PG~~~tY~f~~~ 142 (742)
T 2r7e_A 81 VYDTVVITLKNMASHP---VSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVL 142 (742)
T ss_dssp SEEEEECCEECCSSSC---CCCCCSSSCCCSSSSCCCSSCSCCSSSSSSSSCCTTCEECCEEEEC
T ss_pred CCCEEEEEEEECCCCC---CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 5999999989898997---1576488654654579856678864444788689699199899817
No 64
>2j8h_A Titin, connectin; polymorphism, cardiomyopathy, nuclear protein, serine/threonine-protein kinase, LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=24.65 E-value=30 Score=14.07 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEC---CCCCCCCEEEEEEEEEECCCCCCE
Q ss_conf 98607866025878899717999888855797568638999839937662464---773899648898864217778964
Q T0541 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTV---TSLESENSTNVDFHWTLDGTANSY 78 (106)
Q Consensus 2 lPDL~v~~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v---~~L~~G~s~tv~~~~~~~~~~G~~ 78 (106)
.|.++ ..........|+.+++...+. |.- ...+.||.+|..+..... -....+...++.+.-.-....|.|
T Consensus 4 ~p~~~-~~~~~~~v~~G~~vtl~C~v~--g~P---~p~v~W~~~g~~i~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 77 (197)
T 2j8h_A 4 APHFK-EELRNLNVRYQSNATLVCKVT--GHP---KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVY 77 (197)
T ss_dssp CCEEE-ECCCCEEEETTSCEEEEEEEE--CSS---CCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEE
T ss_pred CCEEE-CCCCCEEECCCCCEEEEEEEE--EEC---CCEEEEEECCEECCCCCCCEEEEEECCCCEEEEEEEECCCCCEEE
T ss_conf 99798-769987995899799999998--726---999999999999978898179999439927999953042565089
Q ss_pred EEEEE
Q ss_conf 89999
Q T0541 79 TLTVN 83 (106)
Q Consensus 79 ti~v~ 83 (106)
+..+.
T Consensus 78 ~C~~~ 82 (197)
T 2j8h_A 78 QVRAT 82 (197)
T ss_dssp EEEEE
T ss_pred EEECC
T ss_conf 99750
No 65
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.54 E-value=22 Score=14.81 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE-CCCCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 87889971799988885579756863899983993766246-47738996488988642177789648999
Q T0541 13 VTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQT-VTSLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 13 ~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~-v~~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
.....|+.++|...|.- |. ....+.||-+|..+.... .....-+...++.+.-.-..-.|.|+..+
T Consensus 18 ~~v~~G~~~~l~C~v~~-~~---~~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 84 (104)
T 2eny_A 18 MEVLEGESCSFECVLSH-ES---ASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV 84 (104)
T ss_dssp EEEESSCCEEEEEECSS-CC---CSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE
T ss_pred EEEECCCEEEEEEEEEC-CC---CCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEE
T ss_conf 89928996999999705-89---996899998993465401357861799889997788511789999999
No 66
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=22.21 E-value=34 Score=13.80 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=19.9
Q ss_pred EEECCC--CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEE
Q ss_conf 602587--88997179998888557975686389998399376
Q T0541 9 SLTPVT--VVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVV 49 (106)
Q Consensus 9 ~i~p~~--~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~ 49 (106)
.+.|.. +..|+.+++...+. |.- ...+.||-+|..+
T Consensus 22 ~~~P~~~~v~~G~~~~l~C~~~--g~p---~~~~~W~k~g~~l 59 (218)
T 3k0w_A 22 TVNPESKAVLAGQFVKLCCRAT--GHP---FVQYQWFKMNKEI 59 (218)
T ss_dssp EECCCCEEEETTSBEEEECEET--TTT---SSEEEEEETTEEC
T ss_pred EECCCCEEECCCCCEEEEEEEE--ECC---CCEEEEEECCEEC
T ss_conf 9949937991899299999998--628---9989999999704
No 67
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.63 E-value=35 Score=13.74 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEE
Q ss_conf 889971799988885579756863899983993766246477389964889886421777896489999
Q T0541 15 VVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVN 83 (106)
Q Consensus 15 ~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~~L~~G~s~tv~~~~~~~~~~G~~ti~v~ 83 (106)
...|+.+.+.+.+. | .+.-.+.|+-+|..+..........+....+.+.-.-..-.|.|+..+.
T Consensus 36 v~~G~~~~l~c~~~--g---~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 99 (118)
T 2e7c_A 36 RKVGEQLNLVVPFQ--G---KPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99 (118)
T ss_dssp EESSSCEEEEEEEE--E---ESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred EECCCEEEEEEEEE--E---ECCCEEEEEEEECCCCEEEEEEEEECCCEEEEECCCCCCCCEEEEEEEE
T ss_conf 95698299999998--8---0799899998223431001345872683279844786556989999999
No 68
>2qv2_A OCRL, inositol polyphosphate 5-phosphatase OCRL-1; endocytosis, clathrin, APPL1, phosphoinositide, ASH, rhogap, hydrolase; 2.40A {Homo sapiens}
Probab=21.48 E-value=13 Score=15.98 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=41.2
Q ss_pred CCCEEEE--EEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEE-----EEEE-ECCCCCCCCEEEEEEEEEE
Q ss_conf 9860786--6025878899717999888855797568638999839937-----6624-6477389964889886421
Q T0541 2 IPDLVPV--SLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIV-----VDTQ-TVTSLESENSTNVDFHWTL 71 (106)
Q Consensus 2 lPDL~v~--~i~p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~-----~~~~-~v~~L~~G~s~tv~~~~~~ 71 (106)
||.+.++ .+.-.....++..+-+++|+|.|...+. |...--.++.. +... .-+.|.||++..+.++...
T Consensus 3 ~~~~~ls~~~i~Fg~v~~~~~~~~~l~i~Ntg~vp~~-f~f~~~~~~~~~~~~wl~v~p~~g~i~Pge~~~i~v~~~v 79 (342)
T 2qv2_A 3 LGSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 79 (342)
T ss_dssp ------CCCEEEEEEECTTCCEECCCCCCC-----------CCCSCTTTSCCTTEEEESCCCCCCSSCCCCCEEEECC
T ss_pred CCEEEEEEEEEEEEEEECCCEEEEEEEEEECCCCEEE-EEEEECCCCCCCCCCCEEECCCCEEECCCCEEEEEEEEEE
T ss_conf 8618975038984477038668899999977875079-9999578887568676687165026889985889999999
No 69
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.55 E-value=29 Score=14.17 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=36.7
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECC-----CCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 58788997179998888557975686389998399376624647-----738996488988642177789648999
Q T0541 12 PVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVT-----SLESENSTNVDFHWTLDGTANSYTLTV 82 (106)
Q Consensus 12 p~~~~~g~~~tv~vtV~N~G~~~a~~~~v~~y~~g~~~~~~~v~-----~L~~G~s~tv~~~~~~~~~~G~~ti~v 82 (106)
......|+.+++...+. + +...+.||-+|..+...... ...-|...++.+.-.-..-.|.|+..+
T Consensus 17 ~~~v~~G~~~~l~C~v~--~----p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~c~a 86 (101)
T 2edk_A 17 DQQVFVGDRVEMAVEVS--E----EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT 86 (101)
T ss_dssp CEEEESSCCCBCCEEES--C----SSCCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred CEEEECCCEEEEEEEEC--C----CCCEEEEEECCEECCCEECCCEEEEEEECCCEEEEEEECCCCCCCEEEEEEE
T ss_conf 88992999399999969--9----9988999999997721411011799982498389999168303388999998
Done!