Query T0542 NH3-DEPENDENT NAD+ SYNTHETASE, STREPTOMYCES AVERMITILIS, 590 residues
Match_columns 590
No_of_seqs 250 out of 3532
Neff 7.5
Searched_HMMs 22458
Date Fri May 21 18:08:23 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0542.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0542.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dla_A Glutamine-dependent NAD 100.0 0 0 1015.3 46.2 561 4-578 12-663 (680)
2 3ilv_A Glutamine-dependent NAD 100.0 0 0 1014.1 39.0 533 1-581 1-616 (634)
3 2e18_A NH(3)-dependent NAD(+) 100.0 0 0 459.8 25.6 248 310-571 6-257 (257)
4 1kqp_A NAD+ synthase;, NH(3)-d 100.0 0 0 450.4 22.5 239 302-574 15-271 (271)
5 1xng_A NH(3)-dependent NAD(+) 100.0 0 0 437.8 25.8 250 306-567 5-260 (268)
6 1wxi_A NH(3)-dependent NAD(+) 100.0 0 0 423.9 21.0 234 302-563 16-268 (275)
7 3fiu_A NH(3)-dependent NAD(+) 100.0 0 0 417.7 24.2 231 306-563 9-248 (249)
8 3dpi_A NAD+ synthetase; ssgcid 100.0 0 0 425.4 18.0 237 300-562 21-277 (285)
9 3hkx_A Amidase; alpha-beta-BET 100.0 0 0 366.4 23.2 258 2-279 18-277 (283)
10 2vhh_A CG3027-PA; hydrolase; 2 100.0 0 0 358.3 23.0 265 2-281 70-366 (405)
11 1uf5_A N-carbamyl-D-amino acid 100.0 0 0 346.4 25.7 266 2-280 1-296 (303)
12 1j31_A Hypothetical protein PH 100.0 0 0 343.0 25.0 250 5-280 2-259 (262)
13 1ems_A Nitfhit, NIT-fragIle hi 100.0 0 0 339.3 25.6 270 1-284 10-288 (440)
14 2uxy_A Aliphatic amidase; nitr 100.0 0 0 337.5 19.9 254 3-274 11-274 (341)
15 2w1v_A Nitrilase-2, nitrilase 100.0 0 0 331.9 22.5 263 1-283 1-271 (276)
16 2dyu_A Formamidase; AMIF, CEK, 100.0 0 0 334.0 20.1 256 3-275 12-275 (334)
17 2e11_A Hydrolase; dimethylarse 100.0 0 0 334.2 18.4 253 1-277 1-260 (266)
18 1f89_A 32.5 kDa protein YLR351 100.0 0 0 322.7 22.1 267 1-280 7-284 (291)
19 2vxo_A GMP synthase [glutamine 99.9 4E-26 1.8E-30 189.3 14.9 203 307-523 224-475 (697)
20 2dpl_A GMP synthetase, GMP syn 99.9 3.9E-25 1.7E-29 182.8 16.9 199 309-523 6-221 (308)
21 2ywb_A GMP synthase [glutamine 99.9 1.7E-20 7.4E-25 152.3 17.2 196 316-525 199-416 (503)
22 2der_A TRNA-specific 2-thiouri 99.6 7.6E-15 3.4E-19 115.0 7.9 148 324-474 15-199 (380)
23 2hma_A Probable tRNA (5-methyl 99.5 4.9E-14 2.2E-18 109.7 8.6 147 324-474 7-191 (376)
24 2c5s_A THII, probable thiamine 99.5 2.7E-12 1.2E-16 98.2 14.5 144 327-474 188-343 (413)
25 1gpm_A GMP synthetase, XMP ami 99.4 8E-11 3.6E-15 88.5 16.2 170 307-497 211-405 (525)
26 3k32_A Uncharacterized protein 99.3 6.3E-12 2.8E-16 95.8 7.3 142 325-473 5-154 (203)
27 3bl5_A Queuosine biosynthesis 99.0 1.7E-09 7.7E-14 79.7 10.6 146 326-473 3-174 (219)
28 1wy5_A TILS, hypothetical UPF0 98.8 5.7E-07 2.6E-11 63.1 15.5 162 307-474 5-186 (317)
29 3a2k_A TRNA(Ile)-lysidine synt 98.4 7.6E-06 3.4E-10 55.7 12.9 152 317-474 5-184 (464)
30 1q15_A CARA; CMPR, (2S,5S)-5-c 98.4 3.4E-05 1.5E-09 51.4 14.9 135 307-446 217-357 (503)
31 1ct9_A Asparagine synthetase B 98.3 4.8E-05 2.1E-09 50.4 14.8 138 304-447 206-361 (553)
32 1jgt_A Beta-lactam synthetase; 98.3 1.5E-05 6.7E-10 53.7 11.8 132 307-445 224-359 (513)
33 1ni5_A Putative cell cycle pro 98.3 3.7E-05 1.7E-09 51.1 13.3 135 327-473 14-172 (433)
34 2pg3_A Queuosine biosynthesis 98.2 3.2E-05 1.4E-09 51.5 11.9 67 325-393 1-67 (232)
35 1zun_A Sulfate adenylyltransfe 97.6 0.0033 1.5E-07 38.3 14.6 76 316-393 38-115 (325)
36 1vl2_A Argininosuccinate synth 97.5 0.0009 4E-08 42.0 9.7 141 327-473 15-178 (421)
37 1k92_A Argininosuccinate synth 97.4 0.0025 1.1E-07 39.0 11.2 134 325-461 9-160 (455)
38 1sur_A PAPS reductase; assimil 97.2 0.01 4.6E-07 35.0 13.3 141 327-473 45-197 (215)
39 2o8v_A Phosphoadenosine phosph 97.2 0.01 4.7E-07 35.0 15.0 141 327-473 46-198 (252)
40 1kor_A Argininosuccinate synth 97.0 0.0044 2E-07 37.4 9.0 142 328-474 2-159 (400)
41 2d13_A Hypothetical protein PH 97.0 0.003 1.4E-07 38.5 8.1 66 324-391 2-73 (227)
42 2nz2_A Argininosuccinate synth 96.7 0.0037 1.6E-07 38.0 6.2 143 325-473 4-169 (413)
43 1vbk_A Hypothetical protein PH 96.0 0.029 1.3E-06 32.1 7.7 117 327-473 180-306 (307)
44 2oq2_A Phosphoadenosine phosph 94.4 0.13 5.7E-06 27.8 7.1 147 326-473 41-203 (261)
45 2goy_A Adenosine phosphosulfat 90.5 0.7 3.1E-05 23.0 14.5 141 327-473 55-212 (275)
46 1uf3_A Hypothetical protein TT 89.8 0.17 7.4E-06 27.1 2.8 73 1-93 1-74 (228)
47 3fwk_A FMN adenylyltransferase 89.1 0.9 4E-05 22.2 13.9 124 326-473 58-213 (308)
48 1rtt_A Conserved hypothetical 82.0 1.4 6.3E-05 20.9 4.3 81 1-96 3-85 (193)
49 1s3l_A Hypothetical protein MJ 81.5 1 4.5E-05 21.9 3.3 35 4-44 25-59 (190)
50 1su1_A Hypothetical protein YF 68.4 2.9 0.00013 18.9 2.8 35 4-44 25-59 (208)
51 3ch4_B Pmkase, phosphomevalona 68.2 3.4 0.00015 18.4 3.2 54 324-385 7-62 (202)
52 3mpo_A Predicted hydrolase of 67.0 4.6 0.0002 17.6 3.6 47 1-52 1-48 (279)
53 2o0m_A Transcriptional regulat 66.4 4.9 0.00022 17.4 7.2 136 306-470 120-265 (345)
54 2yvt_A Hypothetical protein AQ 66.4 1.9 8.3E-05 20.1 1.5 36 3-44 4-39 (260)
55 2c40_A Inosine-uridine preferr 56.7 7.2 0.00032 16.3 6.6 73 315-390 107-197 (312)
56 1q7r_A Predicted amidotransfer 56.2 4 0.00018 18.0 1.8 35 3-44 22-67 (219)
57 2mas_A Inosine-uridine nucleos 55.6 7.5 0.00033 16.1 7.3 21 370-391 172-192 (314)
58 2iss_D Glutamine amidotransfer 54.6 3.2 0.00014 18.6 1.1 36 3-45 19-65 (208)
59 1uj2_A Uridine-cytidine kinase 52.4 6.8 0.0003 16.4 2.4 36 317-352 11-48 (252)
60 3bbl_A Regulatory protein of L 49.7 8.7 0.00039 15.7 2.6 45 1-45 1-46 (287)
61 1ydg_A Trp repressor binding p 48.6 9.6 0.00043 15.4 4.8 39 1-44 3-42 (211)
62 1rkq_A Hypothetical protein YI 48.5 8.1 0.00036 15.9 2.3 49 1-54 1-50 (282)
63 2jjm_A Glycosyl transferase, g 47.8 9.9 0.00044 15.4 5.2 39 2-44 13-51 (394)
64 2yrn_A Neuron navigator 2 isof 47.6 9 0.0004 15.6 2.4 88 306-393 16-105 (129)
65 1sq5_A Pantothenate kinase; P- 46.8 10 0.00046 15.3 6.1 58 313-370 64-128 (308)
66 3ck2_A Conserved uncharacteriz 43.9 11 0.0005 15.0 3.5 35 1-43 4-38 (176)
67 1odf_A YGR205W, hypothetical 3 42.5 12 0.00053 14.8 6.7 70 308-380 11-87 (290)
68 3c8u_A Fructokinase; YP_612366 40.2 13 0.00057 14.6 4.1 54 311-365 5-63 (208)
69 1y7t_A Malate dehydrogenase; N 39.9 13 0.00058 14.6 7.1 11 1-11 1-11 (327)
70 3hjh_A Transcription-repair-co 39.2 13 0.00059 14.5 7.2 29 23-51 49-78 (483)
71 1q8f_A Pyrimidine nucleoside h 38.4 14 0.00061 14.4 7.1 74 316-392 107-192 (313)
72 3g91_A MTH0212, exodeoxyribonu 37.8 14 0.00062 14.4 4.6 42 1-49 1-42 (265)
73 3epw_A IAG-nucleoside hydrolas 36.9 14 0.00065 14.3 6.3 76 314-392 129-224 (338)
74 2q5c_A NTRC family transcripti 36.4 15 0.00066 14.2 4.5 13 1-13 1-13 (196)
75 2grj_A Dephospho-COA kinase; T 32.5 17 0.00076 13.8 2.0 26 327-352 11-38 (192)
76 2qt1_A Nicotinamide riboside k 32.3 16 0.00073 13.9 1.8 10 254-263 134-143 (207)
77 2qkf_A 3-deoxy-D-manno-octulos 31.8 17 0.00078 13.7 3.9 33 15-47 24-56 (280)
78 1nnw_A Hypothetical protein; s 31.3 18 0.00079 13.7 4.6 67 6-94 3-75 (252)
79 2wqp_A Polysialic acid capsule 30.5 18 0.00081 13.6 1.8 27 18-44 29-55 (349)
80 1ysl_A HMG-COA synthase; thiol 30.2 7.8 0.00035 16.0 -0.1 16 311-326 226-241 (402)
81 1hyh_A L-hicdh, L-2-hydroxyiso 29.9 19 0.00083 13.5 7.4 72 312-388 100-171 (309)
82 2bdq_A Copper homeostasis prot 28.3 20 0.00089 13.4 2.0 39 317-357 168-206 (224)
83 3euw_A MYO-inositol dehydrogen 27.6 20 0.00089 13.3 1.6 34 1-43 1-34 (344)
84 1ka9_H Imidazole glycerol phos 27.5 21 0.00092 13.3 2.1 37 3-45 1-48 (200)
85 1fs5_A Glucosamine-6-phosphate 27.3 21 0.00092 13.2 7.4 30 307-336 10-42 (266)
86 2abw_A PDX2 protein, glutamina 26.7 9.7 0.00043 15.4 -0.2 36 1-44 1-50 (227)
87 2qw5_A Xylose isomerase-like T 25.4 22 0.001 13.0 8.2 25 309-333 158-182 (335)
88 3guv_A Site-specific recombina 25.2 23 0.001 13.0 6.4 53 1-54 1-57 (167)
89 2jeo_A Uridine-cytidine kinase 25.0 23 0.001 13.0 2.2 28 325-352 22-51 (245)
90 3fz0_A Nucleoside hydrolase, p 24.9 23 0.001 13.0 6.4 25 369-393 186-212 (360)
91 3beo_A UDP-N-acetylglucosamine 23.9 24 0.0011 12.8 1.9 37 1-43 5-43 (375)
92 3dx5_A Uncharacterized protein 23.7 24 0.0011 12.8 8.9 33 5-42 1-33 (286)
93 1gpj_A Glutamyl-tRNA reductase 22.7 11 0.00047 15.2 -0.6 52 329-393 171-222 (404)
94 3led_A 3-oxoacyl-acyl carrier 21.9 26 0.0012 12.6 2.0 26 373-398 157-182 (392)
95 1dw0_A Cytochrome C; asparagin 21.3 27 0.0012 12.5 1.4 24 536-559 76-99 (112)
96 1y89_A DEVB protein; structura 21.0 27 0.0012 12.4 4.0 16 327-342 185-200 (238)
97 1vli_A Spore coat polysacchari 20.9 27 0.0012 12.4 1.9 28 18-45 38-65 (385)
98 1dek_A Deoxynucleoside monopho 20.7 28 0.0012 12.4 2.1 22 330-351 3-26 (241)
99 2r5f_A Transcriptional regulat 20.5 28 0.0012 12.4 6.5 121 306-438 36-165 (264)
No 1
>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=1015.26 Aligned_cols=561 Identities=28% Similarity=0.393 Sum_probs=495.0
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 45899996067416889999999999999996799699826400378881233310688999999999999986520108
Q T0542 4 QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFG 83 (590)
Q Consensus 4 ~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~~~ 83 (590)
-+|||++|+|+++||+++|+++|++++++|+++|||||||||+++|||+|+|++.++.+++.+++++.+|++.+.. .
T Consensus 12 ~lRIA~aQ~n~~~gD~~~N~~ki~~~i~~A~~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~---~ 88 (680)
T 3dla_A 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESAD---L 88 (680)
T ss_dssp EEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHHGGG---C
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCC---C
T ss_conf 2599999188988999999999999999999869939998888413588466510888999999999999998541---5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCHHHCCCCCC----------------
Q ss_conf 8189983211035543344457882388999981881799873277079876430122016996----------------
Q T0542 84 ELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDT---------------- 147 (590)
Q Consensus 84 ~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~---------------- 147 (590)
++.+++|++++. ++++|||+++|++|+++++|+|+|||+|++|+|+|||+||+.
T Consensus 89 ~i~ivvG~p~~~----------~~~lYNsa~vi~~G~il~~y~K~~Lp~y~~f~E~ryF~pG~~~~~~~~~~~~~v~~g~ 158 (680)
T 3dla_A 89 LPVLVVGAPLRH----------RHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGT 158 (680)
T ss_dssp CSEEEEEEEEEE----------TTEEEEEEEEEETTEEEEEEECSCCCEETTEEHHHHCBCCTTCCSEEESSSCEEEBSS
T ss_pred CEEEEEEEEEEE----------CCEEEEEEEEEECCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCC
T ss_conf 939999899978----------9929999999989979999807628998872502134667776662221663013568
Q ss_pred ---CCEEEECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
Q ss_conf ---10688678578856202341441899999963797899832787657838999999999998607264456312788
Q T0542 148 ---MPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ 224 (590)
Q Consensus 148 ---~~v~~~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e 224 (590)
+.+|+++++++|+.||||+|+++.+.+.++++||++|++|+|||+..++...|..++++++.+++++++++|.+||+
T Consensus 159 ~~~~~v~~~~g~~iGv~IC~D~~~pe~~~~~la~~Gadill~~sAsp~~~gk~~~r~~l~~a~~~~~~~~~v~~~~~~G~ 238 (680)
T 3dla_A 159 DLLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGE 238 (680)
T ss_dssp SEEEEETTCTTCEEEEEEGGGGTSSSCHHHHHHHTTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTS
T ss_pred CCCEEEEECCCCEEEEEECHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 86302796079489998653431885899999987994899657786557849999999999998619618999776147
Q ss_pred C--CEEEECCCEEECCCCCEEECCCCCCCC--EEEEEEEHHHHHHCCCCCCCCCCCCCCCCCC---------CCC-----
Q ss_conf 8--747846727884788343217899864--7999862467651145554223443211113---------323-----
Q T0542 225 D--ELVFDGDSIVVDRDGEVVARAPQFSEG--CVVLDLDLPAAEAEPPTGVVDDGLRIDRLVI---------SEE----- 286 (590)
Q Consensus 225 ~--~~vf~G~S~Iidp~G~ila~~~~f~e~--il~~diDl~~~~~~r~~~~~~~~~~~~~~~~---------~~~----- 286 (590)
+ +.+|+|+|+|. |+|+++++++.|+|+ ++++|||++.++..|...+...+.+...... ...
T Consensus 239 ~~~~~~f~GsS~I~-~~G~vlae~~~f~e~~~vv~adIDl~~l~~~R~~~~~f~d~r~~~~~~~~~~~~~~~~~~~~~~~ 317 (680)
T 3dla_A 239 STTDLAWDGQTMIW-ENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGD 317 (680)
T ss_dssp CCSSCCCCCCEEEE-ETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHCCEEEEECCCCCCSC
T ss_pred CCCCEEECCCEEEE-CCCCEEEECCCCCCCEEEEEEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 89818967988996-79958898877777606999996179999998737850021232002356622676303677554
Q ss_pred -CC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCC-----CCCEEE
Q ss_conf -35---655445677555446705578899999999999841568348970588368999999985169-----551798
Q T0542 287 -PL---PAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG-----AQNVYG 357 (590)
Q Consensus 287 -~~---~~~~~~~~~~~~~~~~~~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g-----~~~v~~ 357 (590)
++ ....+..|.......+.++++|++|++||+||++|+|++++|||||||||||++|+||++|+| ++||++
T Consensus 318 ~~~~~~~~~~p~~p~~~~~~~~~~~~~~~a~~~gl~d~~~~~g~~~~vlglSGGiDSa~~a~~~~~a~~~~~~~~~~v~~ 397 (680)
T 3dla_A 318 IGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILA 397 (680)
T ss_dssp CCCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 44446556688788741120034999999999999999996399833450678801599999999986542385015899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 877888982877999999999719847983459999999986183--------574066555657899999999761978
Q T0542 358 VSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGL--------TGLAEENLQSRLRGTTLMAISNQEGHI 429 (590)
Q Consensus 358 ~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~--------~~~~~~N~qaR~R~~~l~~~a~~~~~l 429 (590)
|+||+++||+.|+++|+.||++||+++.+|+|+++++++.++++. .|+++||+|||+||++||++||+.|+|
T Consensus 398 v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~d~~~eNiqaR~R~~~l~~~an~~~~l 477 (680)
T 3dla_A 398 FALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGI 477 (680)
T ss_dssp EECCC-----CTHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHHTEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 98999999777899999999996990799827899999999864551389877676899888999999999997005988
Q ss_pred EEECCCHHHHHHHHHHH-CCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCC-----CC
Q ss_conf 98748667775520333-0677111223068878899999998610021113321353777258888666788-----88
Q T0542 430 VLAPGNKSELAVGYSTL-YGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPG-----QV 503 (590)
Q Consensus 430 vl~t~n~sE~~lG~~t~-~Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~~-----q~ 503 (590)
|||||||||+++||+|+ |||++|+|+||+||+||+|++|++|+|+......+..+||++|++++|||||+|. |+
T Consensus 478 vl~t~N~sE~~~Gy~T~~yGD~~~~~~pi~~l~K~~v~~l~~~~n~~~~~~~~~~~i~~~i~~~~psaeL~p~~~~~~q~ 557 (680)
T 3dla_A 478 VLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQS 557 (680)
T ss_dssp EEECCCHHHHHHTCSCCSSSTTCCSEESSTTSCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCC-------------
T ss_pred EECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98685671796387013579766665504797399999999998752344443465549982599996567887777887
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHH-----------------------CCCCHHHHHHHHHH-----HHHHHHHH
Q ss_conf 600257866899999999856898799986-----------------------17899899999999-----98515668
Q T0542 504 DTDSLPDYPVLDAILELYVDRDTGADAIVA-----------------------AGYDRELVVKTLRM-----VDTAEYKR 555 (590)
Q Consensus 504 de~~lg~y~~lD~~l~~~~~~~~~~~~i~~-----------------------~~~~~~~v~~~~~~-----~~~~~~KR 555 (590)
|||+||||+++|++|+++++++.++++|.. .+|+++.|++|+++ +.+|||||
T Consensus 558 de~~lg~y~~~d~~l~~~~~~~~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~f~~r~~~~~~~KR 637 (680)
T 3dla_A 558 SEAKVGPFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKR 637 (680)
T ss_dssp --CCSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSCTTSSCCCSSCCTTSCCCCCHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred CHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 64545886788999999998599889999999987523432147765432002469999999999999998756644374
Q ss_pred HHCCCCCEECCCCCCC---CCCCHHH
Q ss_conf 6378943025524774---3341133
Q T0542 556 RQYPPGTKISAKGFGK---DRRLPIT 578 (590)
Q Consensus 556 ~~~pp~~~is~~s~~~---~~r~Pi~ 578 (590)
+|+||||||++++|+. |||||+.
T Consensus 638 ~~~p~g~~v~~~~~~~~R~~~r~P~~ 663 (680)
T 3dla_A 638 SALPNGPKVSHGGALSPRGDWRAPSD 663 (680)
T ss_dssp HTCCBCCCCBTTBCCCTTTTCCCCSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 43899407516668999877608774
No 2
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=0 Score=1014.12 Aligned_cols=533 Identities=26% Similarity=0.385 Sum_probs=480.1
Q ss_pred CCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984-589999606741688999999999999999679969982640037888123331068899999999999998652
Q T0542 1 MSLQ-LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAE 79 (590)
Q Consensus 1 Ms~~-mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~ 79 (590)
|+|+ ||||++|+|+++||+++|+++|++++++|+++|||||||||+++|||+|+|++.++.+.+.+.+++.+|++.+
T Consensus 1 m~m~~~rIa~aQ~n~~~gD~~~N~~~i~~~i~~A~~~gadlvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~-- 78 (634)
T 3ilv_A 1 MSLSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC-- 78 (634)
T ss_dssp ---CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHC--
T ss_conf 997761899995789868899999999999999998889899968882026997787408789999999999999866--
Q ss_pred HCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCHHHCCCCCCC-----------
Q ss_conf 010881899832110355433444578823889999818817998732770798764301220169961-----------
Q T0542 80 EGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTM----------- 148 (590)
Q Consensus 80 ~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~~----------- 148 (590)
.++.+++|++++. ++++|||++++.+|++++.|+|+|||+|++|+|+|||.+|...
T Consensus 79 ---~~i~ivvG~p~~~----------~~~~yNsa~vi~~G~i~~~y~K~~Lpny~~f~E~r~F~~g~~~~~~~~~~~~~~ 145 (634)
T 3ilv_A 79 ---TDITVSLGLPMRI----------AGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVK 145 (634)
T ss_dssp ---TTSEEEEEEEEEE----------TTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEE
T ss_pred ---CCCEEEEEEEEEE----------CCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCC
T ss_conf ---9988999789978----------992899999998998999981755899887564400256777874389528733
Q ss_pred -----CEEEECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf -----068867857885620234144189999996379789983278765783899999999999860726445631278
Q T0542 149 -----PIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGG 223 (590)
Q Consensus 149 -----~v~~~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~ 223 (590)
.+|+++++|+|+.||||+|+++.+.+.++.+||+++++|+|||+..++.+.|..++++||.+++++++|+|++|+
T Consensus 146 ~p~g~~vf~~~g~~iGi~ICeD~w~pe~~~~~~~~~gadli~~~sasp~~~~k~~~r~~l~~~ra~e~~~~vvy~N~vG~ 225 (634)
T 3ilv_A 146 YPFGDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGN 225 (634)
T ss_dssp EEEESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEE
T ss_pred CCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 57776489868917887734665668406664310562698325544122452999999999999850860895266666
Q ss_pred CCCEEEECCCEEECCCCCEEECCCCCCC---CEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8874784672788478834321789986---4799986246765114555422344321111332335655445677555
Q T0542 224 QDELVFDGDSIVVDRDGEVVARAPQFSE---GCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 300 (590)
Q Consensus 224 e~~~vf~G~S~Iidp~G~ila~~~~f~e---~il~~diDl~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (590)
+++.+|.|+|++++|+|++++++++|++ .++++|+|.+..+..+.. ...
T Consensus 226 ~~~~~~~gGs~ii~~~G~~l~~~~~f~~~~~~~~~~di~~~~~~~~~~~----------------------------~~~ 277 (634)
T 3ilv_A 226 EAGRMIYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETV----------------------------LTQ 277 (634)
T ss_dssp SSSSCEEECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------
T ss_pred CCCCCEECCCEEEECCCCHHHHCCCCCEEEEEEEEEECCCCCCCCCCCC----------------------------CCC
T ss_conf 6665051893699589836542666633324689985036543356555----------------------------554
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC------------------------------
Q ss_conf 44670557889999999999984156834897058836899999998516------------------------------
Q T0542 301 DRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDAL------------------------------ 350 (590)
Q Consensus 301 ~~~~~~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~------------------------------ 350 (590)
...+.++++|+++++||+||++|+|++++|+|+||||||+++++|+++|+
T Consensus 278 ~~~~~~~ei~~al~lgl~dy~rk~~~~~~vlglSGGiDSal~a~l~~~al~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 357 (634)
T 3ilv_A 278 DDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHL 357 (634)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 54464689998664557888886178776667740155769999999999987776343322245525566556766422
Q ss_pred ----CCCCEEEEECCCCCCC-----HHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCC----------CCCCHHHHHH
Q ss_conf ----9551798877888982-----87799999999971984798345999999998618----------3574066555
Q T0542 351 ----GAQNVYGVSMPSKYSS-----DHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG----------LTGLAEENLQ 411 (590)
Q Consensus 351 ----g~~~v~~~~mp~~~~s-----~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~----------~~~~~~~N~q 411 (590)
|+++|++++||+.++| +.|+++|+.||++||+++.+++|+++++++.+.+. ..++++||+|
T Consensus 358 ~~~~~~~~v~~v~mp~~y~s~~~~~d~t~~~A~~la~~lg~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~eNiq 437 (634)
T 3ilv_A 358 PFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQ 437 (634)
T ss_dssp TSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
T ss_conf 34554202789966875456877128899999998885487167762318999998644321036667630034444200
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHC
Q ss_conf 65789999999976197898748667775520333067711122306887889999999861002111332135377725
Q T0542 412 SRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASIT 491 (590)
Q Consensus 412 aR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~ 491 (590)
||+||.+||++||+.|+||||||||||+++||||+|||++|+|+||+|||||+|++|++|+|++.. ..+|+.|+.
T Consensus 438 aR~R~~~l~~~an~~~~lvl~Tgn~sE~a~Gy~T~yGD~~~~~~p~~~l~Kt~v~~l~~~~~~~~~-----~~~~~~i~~ 512 (634)
T 3ilv_A 438 ARGRAPIIWMLTNVKQALLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNRN-----QHGLHIVNK 512 (634)
T ss_dssp HHTTHHHHHHHHHHHTCEEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHSC-----CGGGSSCC-
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCC
T ss_conf 347789999977547979984798777213334543876777651268848999999999620057-----887323476
Q ss_pred CCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHC-----CCCH----HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8888666788---886002578668999999998568987999861-----7899----899999999985156686378
Q T0542 492 KPPSAELRPG---QVDTDSLPDYPVLDAILELYVDRDTGADAIVAA-----GYDR----ELVVKTLRMVDTAEYKRRQYP 559 (590)
Q Consensus 492 ~~psaeL~~~---q~de~~lg~y~~lD~~l~~~~~~~~~~~~i~~~-----~~~~----~~v~~~~~~~~~~~~KR~~~p 559 (590)
+||||||+|+ |+|||+||||++||+||+.+++++.++++|+.. .|++ ++|++|+++|++|||||+|+|
T Consensus 513 ~~psaeL~p~~~~Q~de~~l~~Y~~lD~il~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~KR~~~p 592 (634)
T 3ilv_A 513 LAPTAELRPSEYTQTDERDLMPYDVLARIERKAIKERLSPVQVYTALLTEGPYTKNEFKYWVKKFFRLWSINQWKRERLA 592 (634)
T ss_dssp ------------------CCCTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHTHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHCCCCCC
T ss_conf 79897779999999886767899999999999998599999999986540488878999999999999886421665589
Q ss_pred CCCEECCCCCCC--CCCCHHHHHH
Q ss_conf 943025524774--3341133532
Q T0542 560 PGTKISAKGFGK--DRRLPITNRW 581 (590)
Q Consensus 560 p~~~is~~s~~~--~~r~Pi~~~~ 581 (590)
|||||+++|||| +|||||++..
T Consensus 593 pg~~v~~~s~~pr~~~r~Pi~~~~ 616 (634)
T 3ilv_A 593 PSFHMDDFNIDPRSWYRFPILSSG 616 (634)
T ss_dssp CBCCCSSCCCCTTTTCCCCSSCCT
T ss_pred CCEEECCCCCCCCCCCCCCCCCCH
T ss_conf 924872768899866307357842
No 3
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=0 Score=459.85 Aligned_cols=248 Identities=35% Similarity=0.575 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 89999999999984156834897058836899999998516955179887788898287799999999971984798345
Q T0542 310 YSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSI 389 (590)
Q Consensus 310 ~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i 389 (590)
|++++.+|+||++++|+++|||||||||||||+|+||++|+|+++|++++||.. +..+.++|+.+|+.||+.+..++|
T Consensus 6 ~~~~v~~l~d~~~k~g~~~vvvglSGGVDSav~A~La~~AlG~~~v~~v~~~~~--~~~~~~~A~~la~~Lgi~~~~i~~ 83 (257)
T 2e18_A 6 YDKVIERILEFIREKGNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYF--ENKDVEDAKLVAEKLGIGYKVINI 83 (257)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSS--CSTHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999999999983999799968876999999999998568753798707876--302389999999873787412540
Q ss_pred HHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHH
Q ss_conf 9999999986183--57406655565789999999976197898748667775520333067711122306887889999
Q T0542 390 EPMFDAYMASLGL--TGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFR 467 (590)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~ 467 (590)
+++++.+...+.. ...+.+|+|+|+||.++|++||..|++|+||+|+||.++||+|+|||++++++||+||||++||+
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~n~~aR~r~~~l~~~a~~~~~~vlgt~n~se~~~g~~t~~gd~~~~~~Pl~dL~K~eVr~ 163 (257)
T 2e18_A 84 KPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFLTGYFTKWGDGASDYAPIINLYKTEVWE 163 (257)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHHHTCSCTTSTTCSSBCTTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 50899999986556667777778888717899998510487385578723132011444676567655356988999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCHHHHHH-CCCCHHHHHHHH
Q ss_conf 999861002111332135377725888866678888600257-866899999999856898799986-178998999999
Q T0542 468 LAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQVDTDSLP-DYPVLDAILELYVDRDTGADAIVA-AGYDRELVVKTL 545 (590)
Q Consensus 468 la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~~q~de~~lg-~y~~lD~~l~~~~~~~~~~~~i~~-~~~~~~~v~~~~ 545 (590)
|++|+| +|++|++|+|||+||++|+||++|| ||+++|.+|+.+++.+.+++++.. .+++++.|+++.
T Consensus 164 La~~Lg-----------lp~~ii~k~Psp~L~~~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~g~~~~~v~~i~ 232 (257)
T 2e18_A 164 IAKRIG-----------VPERIVKKKPSAGLWEGQTDEDELGISYNLLDEILWRMIDLKIGKEEIAKDLGIPLSLVERVE 232 (257)
T ss_dssp HHHHHT-----------CCHHHHHSCCCCCSSTTCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHCC-----------CCHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999839-----------997886069996546899745532877899999999998749999999989595999999999
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCC
Q ss_conf 99985156686378943025524774
Q T0542 546 RMVDTAEYKRRQYPPGTKISAKGFGK 571 (590)
Q Consensus 546 ~~~~~~~~KR~~~pp~~~is~~s~~~ 571 (590)
+++.+|||||+ +||+|+++++||||
T Consensus 233 ~~~~~~~~KR~-~P~~p~~~~~~~~p 257 (257)
T 2e18_A 233 ELIKKSEHKRR-LPIGPSFEDLIVGP 257 (257)
T ss_dssp HHHHTTGGGSS-CCCCCCCGGGEEC-
T ss_pred HHHHHHHHHCC-CCCCCEECCCCCCC
T ss_conf 99999898447-99998155712794
No 4
>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=100.00 E-value=0 Score=450.37 Aligned_cols=239 Identities=26% Similarity=0.355 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC-------CCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 4670557889999999999984156834897058836899999998516-------955179887788898287799999
Q T0542 302 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDAL-------GAQNVYGVSMPSKYSSDHSKGDAA 374 (590)
Q Consensus 302 ~~~~~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~-------g~~~v~~~~mp~~~~s~~~~~~a~ 374 (590)
..++.+++ +.++.|||||++++|++|+||||||||||||+|+||++|+ |+++|++++||. ++..+.++|+
T Consensus 15 ~~d~~~~i-~~~v~~Lrdy~~~~g~~gvvvglSGGIDSav~a~L~~~Al~~~~~~~g~~~v~~l~mP~--~~~~~~~~a~ 91 (271)
T 1kqp_A 15 SIDPKQEI-EDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPH--GTQQDEDDAQ 91 (271)
T ss_dssp SCCHHHHH-HHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCS--SSCTTHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCHHHHHH
T ss_conf 99989999-99999999999996899199979888889999999999999887606885799994587--6640688999
Q ss_pred HHHHHCCCCEE-EECHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHC
Q ss_conf 99997198479-8345999999998618------3574066555657899999999761978987486677755203330
Q T0542 375 ELARRTGLNFR-TVSIEPMFDAYMASLG------LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLY 447 (590)
Q Consensus 375 ~la~~lg~~~~-~i~i~~~~~~~~~~~~------~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~ 447 (590)
.+++.+++.+. +++|.+++++|...+. ..+++.+|+|||+||.+||++||+.|++|+|||||||+++||+|+|
T Consensus 92 ~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~NiqaRiR~~~Ly~~An~~g~lvlgTgNksE~~~Gy~Tky 171 (271)
T 1kqp_A 92 LALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKY 171 (271)
T ss_dssp HHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHTTTCSCTT
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHEEEEEEC
T ss_conf 99987266651686226887776666666540340044423753122358998776217977982796312310336775
Q ss_pred CCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC---CCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 67711122306887889999999861002111332135377725888866678---888600257-86689999999985
Q T0542 448 GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP---GQVDTDSLP-DYPVLDAILELYVD 523 (590)
Q Consensus 448 Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~---~q~de~~lg-~y~~lD~~l~~~~~ 523 (590)
||+++|++||+||+|++|++||+|++ +|++|++|+||||||+ +|+||++|| ||+.||.||+.
T Consensus 172 GD~~~di~Pi~~L~K~eV~~la~~lg-----------iP~~Ii~k~PSaeL~~~~~~Q~DE~~lg~~Y~~lD~~l~~--- 237 (271)
T 1kqp_A 172 GDGGADLLPLTGLTKRQGRTLLKELG-----------APERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEG--- 237 (271)
T ss_dssp TTTCCSBCTTTTCCHHHHHHHHHHTT-----------CCTHHHHSCCBCCCCSSSTTCBHHHHHSSCHHHHHHHHTT---
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC-----------CCCCCEECCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHC---
T ss_conf 77876503110367899999999858-----------8742133799800126899997977719999999999856---
Q ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
Q ss_conf 689879998617899899999999985156686378943025524774334
Q T0542 524 RDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 574 (590)
Q Consensus 524 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~~is~~s~~~~~r 574 (590)
...+.+.++++.+++.+|+|||+ +||.+ |+..||
T Consensus 238 ----------~~~~~~~~~~i~~~~~~~~hKR~-~P~~~------f~~~w~ 271 (271)
T 1kqp_A 238 ----------KEVSAKVSEALEKRYSMTEHKRQ-VPASM------FDDWWK 271 (271)
T ss_dssp ----------CCCCHHHHHHHHHHHHHTGGGGS-SCBCT------TCCTTC
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHCCC-CCCCC------CCCCCC
T ss_conf ----------78889999999999998775216-99986------465138
No 5
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=100.00 E-value=0 Score=437.83 Aligned_cols=250 Identities=30% Similarity=0.454 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 55788999999999998415683489705883689999999851695517988778889828779999999997198479
Q T0542 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFR 385 (590)
Q Consensus 306 ~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~ 385 (590)
.+.+.+.++.+|++|++++|++++||||||||||||+|+||.++. .+||+|++||+..+++.+.++|+.+|+.||+++.
T Consensus 5 ~~~~i~~i~~~I~~~v~~~g~k~vvvglSGGVDSsv~A~L~~~a~-~~~v~~v~mp~~~~~~~~~~~A~~~a~~lgi~~~ 83 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVF-KENAHALLMPSSVSMPENKTDALNLCEKFSIPYT 83 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHH-GGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999999999999999998199829997878889999999999862-4330787225301561133679999998531340
Q ss_pred EECHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHH
Q ss_conf 83459999999986183-57406655565789999999976197898748667775520333067711122306887889
Q T0542 386 TVSIEPMFDAYMASLGL-TGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTS 464 (590)
Q Consensus 386 ~i~i~~~~~~~~~~~~~-~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd~~~~~~p~~~l~Kt~ 464 (590)
++++..+.+.+...+.. ...+.+|+|||+||.++|++||..|++++||+|++|.++||+|+|||++++++||++|||++
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~n~~ar~r~~~l~~~a~~~~~~v~gT~n~~E~~~g~~t~~gd~~~~~~Pl~~L~K~e 163 (268)
T 1xng_A 84 EYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTE 163 (268)
T ss_dssp ECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHH
T ss_pred EEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCHHH
T ss_conf 00013787655543022000257889999999999988876188567872176675365512544234300123768999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHH----HCCCCHHHHHHCCCCHH
Q ss_conf 999999861002111332135377725888866678888600257-8668999999998----56898799986178998
Q T0542 465 IFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQVDTDSLP-DYPVLDAILELYV----DRDTGADAIVAAGYDRE 539 (590)
Q Consensus 465 v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~~q~de~~lg-~y~~lD~~l~~~~----~~~~~~~~i~~~~~~~~ 539 (590)
||+||+++| +|++|++|+|||+|||+|+||++|| ||+++|.+|+.+. +++.+.+.+.+.+++++
T Consensus 164 Vr~LAr~lg-----------lP~~i~~k~Ps~~l~~~q~De~~lg~~Y~~lD~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (268)
T 1xng_A 164 VYELARRLN-----------IPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQLGYDEI 232 (268)
T ss_dssp HHHHHHHTT-----------CCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHHTTCCHH
T ss_pred HHHHHHHHC-----------CCHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHH
T ss_conf 999999819-----------848871279996512367876651588899999999877521224589999988499999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf 9999999998515668637894302552
Q T0542 540 LVVKTLRMVDTAEYKRRQYPPGTKISAK 567 (590)
Q Consensus 540 ~v~~~~~~~~~~~~KR~~~pp~~~is~~ 567 (590)
.|++|.+++.+|+|||++.|++++++.+
T Consensus 233 ~v~~i~~~~~~~~~Kr~~p~~~~~~~p~ 260 (268)
T 1xng_A 233 LVKNITSRIQKNAFKLELPAIAKRFNPE 260 (268)
T ss_dssp HHHHHHHHHHHTGGGGSCCEECCCC---
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf 9999999999708615479987342854
No 6
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=100.00 E-value=0 Score=423.93 Aligned_cols=234 Identities=25% Similarity=0.315 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHHHHCCCCCCE---------EEEECCCCCCCHHHHH
Q ss_conf 467055788999999999998415-683489705883689999999851695517---------9887788898287799
Q T0542 302 RLDADEEVYSALVVGLRAYVAKNG-FRSVLIGLSGGIDSALVAAIACDALGAQNV---------YGVSMPSKYSSDHSKG 371 (590)
Q Consensus 302 ~~~~~e~~~~a~~~~l~d~~~~~g-~~~~viglSGGiDS~~~~~la~~a~g~~~v---------~~~~mp~~~~s~~~~~ 371 (590)
..+..+++ +.++.+||||+++++ .+++||||||||||||+|+||++|+|+++| +++.||...++. ..+
T Consensus 16 ~~~~~~~i-~~~v~~lrdy~~k~~~~k~vViGlSGGIDSaV~A~L~~~Alg~~~v~~~~~~~~~~~v~mp~~~~~~-~~d 93 (275)
T 1wxi_A 16 QINAEEEI-RRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQAD-EQD 93 (275)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTT-HHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-HHH
T ss_conf 99989999-9999999999997399874999788878899999999999998765206555228999678754421-489
Q ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
Q ss_conf 999999971984798345999999998618-----357406655565789999999976197898748667775520333
Q T0542 372 DAAELARRTGLNFRTVSIEPMFDAYMASLG-----LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTL 446 (590)
Q Consensus 372 ~a~~la~~lg~~~~~i~i~~~~~~~~~~~~-----~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~ 446 (590)
.+..++..+++.+.+++|++++.++.+.+. ..+++.+|+|||+||.+||++||..|++|+||||+||.++||+|+
T Consensus 94 ~~~~l~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~NiqaR~R~~~ly~~A~~~~~lVlgTgNksE~~~Gy~T~ 173 (275)
T 1wxi_A 94 CQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITGFFTK 173 (275)
T ss_dssp HHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHTTTCSCT
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99999873186331023307889898865402666564210026678899999999863398336887610002450112
Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCC---CCCCCCC-CHHHHHHHHHHHH
Q ss_conf 06771112230688788999999986100211133213537772588886667888---8600257-8668999999998
Q T0542 447 YGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQ---VDTDSLP-DYPVLDAILELYV 522 (590)
Q Consensus 447 ~Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~~q---~de~~lg-~y~~lD~~l~~~~ 522 (590)
|||++++++||++|+|++||+||+|++ +|++|++|+||||||++| +||++|| ||+.+|.+|+
T Consensus 174 yGD~~~di~Pl~~L~K~eVr~La~~Lg-----------iP~~Ii~k~PsaeL~~~q~~~~DE~~lg~~Y~~lD~~l~--- 239 (275)
T 1wxi_A 174 YGDGGTDINPLYRLNKRQGKQLLAALA-----------CPEHLYKKAPTADLEDDRPSLPDEVALGVTYDNIDDYLE--- 239 (275)
T ss_dssp TTTTCCSBCTTTTCCHHHHHHHHHHTT-----------CCGGGTSCC-------------CHHHHSSCHHHHHHHHT---
T ss_pred ECCCCCCHHHHCCCCHHHHHHHHHHHH-----------HHHHHEECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHH---
T ss_conf 135630045320347789999998544-----------200111137997552788899998885989999999997---
Q ss_pred HCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 56898799986178998999999999851566863789430
Q T0542 523 DRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK 563 (590)
Q Consensus 523 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~~ 563 (590)
....+++.++++.+++.+|+|||+ ||.+.
T Consensus 240 ----------~~~~~~~~~~~i~~~~~~~~~Kr~--~P~~~ 268 (275)
T 1wxi_A 240 ----------GKNVPQQVARTIENWYLKTEHKRR--PPITV 268 (275)
T ss_dssp ----------TCCCCHHHHHHHHHHHHHTGGGGS--SCCCT
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf ----------179999999999999998775638--99998
No 7
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=100.00 E-value=0 Score=417.73 Aligned_cols=231 Identities=28% Similarity=0.391 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 55788999999999998415683489705883689999999851695517988778889828779999999997198479
Q T0542 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFR 385 (590)
Q Consensus 306 ~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~ 385 (590)
.++..+.++.||+||++++|++|+||||||||||||+|+||++|.+ ++++++||+.++++.+.++|+.+|+.||+++.
T Consensus 9 p~~~~~~iv~~i~d~v~~~g~~gvvlglSGGvDSav~a~L~~~a~~--~~~~~~m~~~~~~~~~~~dA~~la~~lgi~~~ 86 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGL--PTTALILPSDNNQHQDMQDALELIEMLNIEHY 86 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTS--CEEEEECCCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999980998299978888899999999998398--75353368753106899999999987266640
Q ss_pred EECHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 8345999999998618--------35740665556578999999997619789874866777552033306771112230
Q T0542 386 TVSIEPMFDAYMASLG--------LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPI 457 (590)
Q Consensus 386 ~i~i~~~~~~~~~~~~--------~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd~~~~~~p~ 457 (590)
+++|+.+++++.+.+. ...++.+|+|||+||.+||++||..+++++||+|+||.++||+|+|||++++++||
T Consensus 87 ~idi~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~r~~~l~~~a~~~~~lv~gt~nkse~~~G~~t~~gd~~~~i~Pl 166 (249)
T 3fiu_A 87 TISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNACEWYMGYFTKFGDGAADILPL 166 (249)
T ss_dssp ECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHHHHHHTCSCTTTTTCCSBCTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHCCCCCCCCCCCCCHHHC
T ss_conf 01457889999999743101254067999988888899999999742269753479975402402266436777552205
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCHHHHHHCCC
Q ss_conf 6887889999999861002111332135377725888866678888600257-866899999999856898799986178
Q T0542 458 KDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQVDTDSLP-DYPVLDAILELYVDRDTGADAIVAAGY 536 (590)
Q Consensus 458 ~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~~~q~de~~lg-~y~~lD~~l~~~~~~~~~~~~i~~~~~ 536 (590)
+||+|++||+||+|++ +|++|++++|||+|||+|+||++|| ||+.+|.||+. ...
T Consensus 167 ~~L~K~eVr~lA~~lg-----------lP~~ii~k~Psa~L~~~q~De~~lg~~Y~~ld~~l~~-------------~~~ 222 (249)
T 3fiu_A 167 VNLKKSQVFELGKYLD-----------VPKNILDKAPSAGLWQGQTDEDEMGVTYQEIDDFLDG-------------KQV 222 (249)
T ss_dssp TTCCHHHHHHHHHHTT-----------CCHHHHHSCCCCCSSTTCCHHHHHTSCHHHHHHHHHT-------------CCC
T ss_pred CCCCHHHHHHHHHHCC-----------CCHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHC-------------CCC
T ss_conf 6858899999999829-----------9999980889945368999977729999999999846-------------788
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 998999999999851566863789430
Q T0542 537 DRELVVKTLRMVDTAEYKRRQYPPGTK 563 (590)
Q Consensus 537 ~~~~v~~~~~~~~~~~~KR~~~pp~~~ 563 (590)
+.+.++++.+++.+|+|||+ +||+|.
T Consensus 223 ~~~~~~~i~~~~~~~~hKr~-~~~~p~ 248 (249)
T 3fiu_A 223 SAKALERINFWHNRSHHKRK-LALTPN 248 (249)
T ss_dssp CHHHHHHHHHHHHTTHHHHS-CCBCCC
T ss_pred CHHHHHHHHHHHHHHHHCCC-CCCCCC
T ss_conf 99999999999998787058-999999
No 8
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=0 Score=425.41 Aligned_cols=237 Identities=27% Similarity=0.373 Sum_probs=207.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCE-----EEEECCCCCCCHHHHHHHH
Q ss_conf 54467055788999999999998415683489705883689999999851695517-----9887788898287799999
Q T0542 300 ADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNV-----YGVSMPSKYSSDHSKGDAA 374 (590)
Q Consensus 300 ~~~~~~~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v-----~~~~mp~~~~s~~~~~~a~ 374 (590)
.+..++.+++.+ .+.+|+||++++|++++||||||||||||+|+||++|+|+.++ .++.||..++++.+.++|+
T Consensus 21 ~p~~~~~~~i~~-~v~~l~dy~~~~g~k~vVvGLSGGVDSaV~A~L~~~A~g~~~~~g~~~~~i~~~~~~~s~~~~~da~ 99 (285)
T 3dpi_A 21 SPTFDARDEAER-RIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQHDEADAR 99 (285)
T ss_dssp CSSCCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC---CHHHH
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 999999999999-9999999999829997999688899999999999998876346776747999837888855799999
Q ss_pred -HHHHHCCCCEEEECHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHH
Q ss_conf -9999719847983459999999986183----------57406655565789999999976197898748667775520
Q T0542 375 -ELARRTGLNFRTVSIEPMFDAYMASLGL----------TGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGY 443 (590)
Q Consensus 375 -~la~~lg~~~~~i~i~~~~~~~~~~~~~----------~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~ 443 (590)
.++..+|+++.+++|+++++++.+.+.. .+++.+|+|||+||.+||++||..|++|+||||+||.++||
T Consensus 100 ~~~a~~l~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Ni~aR~R~~~ly~~A~~~~~lVlgTgNksE~~~Gy 179 (285)
T 3dpi_A 100 RALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESVMGF 179 (285)
T ss_dssp HHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHEEEE
T ss_conf 99986336531266311588888999975056567852126788678898767899987634298898479862131456
Q ss_pred HHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCC---CCCCCCCCCCC-CHHHHHHHHH
Q ss_conf 3330677111223068878899999998610021113321353777258888666---78888600257-8668999999
Q T0542 444 STLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAEL---RPGQVDTDSLP-DYPVLDAILE 519 (590)
Q Consensus 444 ~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL---~~~q~de~~lg-~y~~lD~~l~ 519 (590)
+|+|||+++|++||++|||++||+||+++| +|+.|++|+||||| |++|+||++|| +|+.||.+|+
T Consensus 180 ~Tk~gD~~~di~PL~~L~K~eVr~LAr~lg-----------lp~~Ii~k~Psa~L~~~~~~qtDE~~lG~~Y~~ld~~l~ 248 (285)
T 3dpi_A 180 FTKFGDGGADVLPLAGLTKRRVRALARMLG-----------ADEPLVLKTPTADLETLRPQRPDEHAYGITYEQIDDFLE 248 (285)
T ss_dssp HHCCCCCCCSBCTTTTCCHHHHHHHHHHTT-----------CCHHHHTCCCHHHHGGGSCSCC--CCCCCCHHHHHHHHH
T ss_pred EEECCCCCCCEEEECCEEHHHHHHHHHHHC-----------CCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf 776377776321036738899999999858-----------987551699897877789999697771999999999996
Q ss_pred HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9985689879998617899899999999985156686378943
Q T0542 520 LYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGT 562 (590)
Q Consensus 520 ~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~ 562 (590)
. ..++++.++++.+++.+|+|||+ +|+.+
T Consensus 249 ~-------------~~~~~~~~~~v~~~~~~~~hKR~-~P~~~ 277 (285)
T 3dpi_A 249 G-------------KPMDDAVAETVLRFYDATRHKRA-LPYTM 277 (285)
T ss_dssp T-------------CSCCHHHHHHHHHHHHHHHHHHH-CC---
T ss_pred C-------------CCCCHHHHHHHHHHHHHHHHCCC-CCCCC
T ss_conf 5-------------78999999999999997675528-99997
No 9
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=0 Score=366.41 Aligned_cols=258 Identities=26% Similarity=0.294 Sum_probs=218.1
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98458999960674168899999999999999967996998264003788812333106889999999999999865201
Q T0542 2 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEG 81 (590)
Q Consensus 2 s~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~ 81 (590)
..+||||++|+++.++|+++|++++++++++|+++|||||||||+++|||++.|+...... +.....+..+.+. +.
T Consensus 18 ~~~~riA~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvv~PE~~l~Gy~~~~~~~~~~~-~~~~~~~~~l~~l---A~ 93 (283)
T 3hkx_A 18 GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSA-EQVDAARSRLRGI---AR 93 (283)
T ss_dssp TEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCH-HHHHHHHHHHHHH---HH
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH-HCCCHHHHHHHHH---HH
T ss_conf 7987899998889889999999999999999998879799958775568984787644202-1068999999999---99
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCCCCCHHHCCCCCC-CCEEEECCEEEE
Q ss_conf 088189983211035543344457882388999981-881799873277079876430122016996-106886785788
Q T0542 82 FGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDT-MPIVRLHGVDIA 159 (590)
Q Consensus 82 ~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~-~~v~~~~g~riG 159 (590)
..++.+++|++++.. ++.+||+++++. +|+++++|+|+||++ ++|+++|.||+. ..+|+++++|||
T Consensus 94 ~~~i~ii~G~~~~~~---------~~~~~n~~~~i~~~G~ii~~y~K~~L~~---~~E~~~f~~G~~~~~v~~~~~~~ig 161 (283)
T 3hkx_A 94 DRGIALVWSLPGPEG---------PEQRGITAELADEHGEVLASYQKVQLYG---PEEKAAFVPGEQPPPVLSWGGRQLS 161 (283)
T ss_dssp HTTSEEEECCBCSSC---------TTTCCBEEEEECTTSCEEEEEECSSCCH---HHHHHHSCCCCSCCCEEEETTEEEE
T ss_pred HCCCEEEEEEEEEEC---------CCCEEEEEEEEECCCCEEEEEEEECCCC---CCCCCEECCCCCCCCCCEEECCEEC
T ss_conf 829889997789837---------8624799999956995898981663412---3543023147855421111010113
Q ss_pred EEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCEEECCC
Q ss_conf 56202341441899999963797899832787657838999999999998607264456312788874784672788478
Q T0542 160 LAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRD 239 (590)
Q Consensus 160 i~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~~~vf~G~S~Iidp~ 239 (590)
++||+|.|| ++..+.++.+|++++++|++|+... ...|..+.++||.||++|++++|++|.+++.+|.|+|+|++|+
T Consensus 162 ~~IC~D~~f-pe~~r~la~~ga~lil~psa~~~~~--~~~~~~~~~arA~eng~~vv~~N~~G~~~~~~~~G~S~i~~p~ 238 (283)
T 3hkx_A 162 LLVCYDVEF-PEMVRAAAARGAQLVLVPTALAGDE--TSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPA 238 (283)
T ss_dssp ECCGGGGGS-HHHHHHHHHTTCSEEEEECCCBSCC--THHHHTHHHHHHHHHTCEEEEECBEEEETTEEEECCCEEECTT
T ss_pred CCCCCCCCC-HHHHHHHHHCCCCEEEECCCCCCCC--CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCEEEECCC
T ss_conf 543444347-5999999737787899915788986--4211016788998646842997510058990771406999299
Q ss_pred CCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8343217899864799986246765114555422344321
Q T0542 240 GEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRID 279 (590)
Q Consensus 240 G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~~~ 279 (590)
|+++++++. +|+++++|||++.++..|...+...++|++
T Consensus 239 G~vla~~~~-~e~~l~~~id~~~~~~~r~~~~~~~drr~~ 277 (283)
T 3hkx_A 239 GQPLGELGV-EPGLLVVDLPDQSQDAGSDSADYLQDRRAE 277 (283)
T ss_dssp SCEEEECCS-SCEEEEEEEEC----------CHHHHSCHH
T ss_pred CCEEEECCC-CCEEEEEEECHHHHHHHHHHCCHHHHCCHH
T ss_conf 989998589-985999997699999999849856758988
No 10
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=0 Score=358.26 Aligned_cols=265 Identities=19% Similarity=0.180 Sum_probs=219.6
Q ss_pred CCCEEEEEEECC-------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH------HHHH-HHHH
Q ss_conf 984589999606-------7416889999999999999996799699826400378881233310------6889-9999
Q T0542 2 SLQLRLALNQID-------STVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR------SSFV-EASR 67 (590)
Q Consensus 2 s~~mkIAlaQ~~-------~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~------~~~~-~~~~ 67 (590)
.+.+|||++|.+ |...|.++|.+|+.++|++|+++||+||||||+|+|||+....-.. .... ....
T Consensus 70 pr~VrVa~vQ~~i~~~~~~pv~~~~~a~~~ki~~li~~Aa~~Ga~lVvfPEl~~tgY~~~~~~~~~~~~~ae~~~~gp~~ 149 (405)
T 2vhh_A 70 RRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTT 149 (405)
T ss_dssp CCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHH
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 85589999843677788787334699999999999999998699299886214668985402245478764342799899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCCCCCHHHCCCCC
Q ss_conf 99999999865201088189983211035543344457882388999981-88179987327707987643012201699
Q T0542 68 TALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGD 146 (590)
Q Consensus 68 ~~l~~la~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~ 146 (590)
+.+.++++ .+++.|++|++++... .++++|||+++|. +|+++++|+|+|||+++.|+|++||.+|+
T Consensus 150 ~~l~~lAk------~~~i~Iv~G~~Er~~~-------~g~~lyNta~vi~pdG~ii~~yrK~hL~~~~~~~E~~~~~~G~ 216 (405)
T 2vhh_A 150 KMLAELAK------AYNMVIIHSILERDME-------HGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGN 216 (405)
T ss_dssp HHHHHHHH------HTTCEEEEEEEEEETT-------TTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCC
T ss_pred HHHHHHHH------HCCCEEEEEEEEEECC-------CCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 99999999------7398899620376337-------8974789899993699287688674047877433211133148
Q ss_pred C-CCEEEECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC-
Q ss_conf 6-10688678578856202341441899999963797899832787657838999999999998607264456312788-
Q T0542 147 T-MPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ- 224 (590)
Q Consensus 147 ~-~~v~~~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e- 224 (590)
. +++|+++++|||++||||.|++ +..+.++.+||++|++|++++.... ...|....++||.+|++|++++|++|.+
T Consensus 217 ~~~~v~dt~~gkiG~lIC~D~~~P-e~~r~la~~Gadii~~Ps~~~~~~~-~~~~~~~~r~rA~eN~~~Vv~aN~vG~e~ 294 (405)
T 2vhh_A 217 TGHPVFETEFGKLAVNICYGRHHP-QNWMMFGLNGAEIVFNPSATIGRLS-EPLWSIEARNAAIANSYFTVPINRVGTEQ 294 (405)
T ss_dssp SCCCEEEETTEEEEECCGGGGGCH-HHHHHHHHTTCSEEEEEECCBCTTT-HHHHHHHHHHHHHHHTSEEEEEECEECCC
T ss_pred CCCCEEECCCCEEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCH-HHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 875569758936987623556651-7776777479829995677788622-78888789999998298299995400067
Q ss_pred ---------------CCEEEECCCEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ---------------874784672788478834321789986479998624676511455542234432111
Q T0542 225 ---------------DELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 281 (590)
Q Consensus 225 ---------------~~~vf~G~S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~~~~~ 281 (590)
+...|+|+|+|++|+|+++++++.++|+++++||||+.++..|..+.+..++|.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~EgilvadiDL~~i~~~R~~~~~~~~rRpdlY 366 (405)
T 2vhh_A 295 FPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLY 366 (405)
T ss_dssp CC-----------------EECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 765223443333556787143306998499868760489998899999748999999976885211786679
No 11
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=0 Score=346.39 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=216.0
Q ss_pred CCCEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH---------HHHHH
Q ss_conf 98458999960674--16889999999999999996799699826400378881233310688999---------99999
Q T0542 2 SLQLRLALNQIDST--VGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEA---------SRTAL 70 (590)
Q Consensus 2 s~~mkIAlaQ~~~~--~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~---------~~~~l 70 (590)
|+|||||++|++|+ ..+.++|++|+++++++|+++|||||||||+++|||++...+....-... ..+.+
T Consensus 1 ~~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~~i~~A~~~gadlivfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T 1uf5_A 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPL 80 (303)
T ss_dssp CCEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHH
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 94799999926786898589999999999999999888939990888634587200003666776666552488899999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCCCC--------CHHH
Q ss_conf 99999865201088189983211035543344457882388999981-88179987327707987643--------0122
Q T0542 71 RELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFD--------EFRY 141 (590)
Q Consensus 71 ~~la~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~~~--------E~r~ 141 (590)
.++++ ..++.+++|+++..... .++++||++++|+ +|+++++|+|+||++++++. |.++
T Consensus 81 ~~~A~------~~~i~i~~G~~~~~~~~------~~~~~yNsa~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~ 148 (303)
T 1uf5_A 81 FEKAA------ELGIGFNLGYAELVVEG------GVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRY 148 (303)
T ss_dssp HHHHH------HHTCEEEEEEEEEEEET------TEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHH
T ss_pred HHHHH------HCCCEEEEEEEEEEEEC------CCCEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCEE
T ss_conf 99999------74946988754422314------8971588999605653122103652479986554343110102115
Q ss_pred CCCCCC-CCEEEECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCH--------HHHHHHHHHHHHHCC
Q ss_conf 016996-10688678578856202341441899999963797899832787657838--------999999999998607
Q T0542 142 FVPGDT-MPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD--------DTRLELVRKRAQEAG 212 (590)
Q Consensus 142 f~~G~~-~~v~~~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~--------~~r~~~~~~rA~e~~ 212 (590)
|.++.. ..+|+++++++|++||||.||+ +..+.++.+||+++++|++||+...+. ..|....++||.||+
T Consensus 149 ~~~~~~~~~~~~~~~~~ig~~IC~D~~fp-e~~r~~~~~Ga~iil~~s~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~ 227 (303)
T 1uf5_A 149 FEPGDLGFPVYDVDAAKMGMFIANDRRWP-EAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNG 227 (303)
T ss_dssp CCCCSSCSCEEEETTEEEEECCGGGGGCH-HHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCEEEEECCCEEEECCCCCCHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 73068765058845836876022131015-76666762898899970455654544421001100124666666655245
Q ss_pred HHHHHHHHCCCCCCEEEECCCEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCC-CCCCCCCC
Q ss_conf 264456312788874784672788478834321789986479998624676511455542-23443211
Q T0542 213 CTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVV-DDGLRIDR 280 (590)
Q Consensus 213 ~~vv~aN~vG~e~~~vf~G~S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~-~~~~~~~~ 280 (590)
+|++++|.+|.+++..|.|+|+|++|+|+++++++.++|+++++|||+++++..|...+. .+.+|++.
T Consensus 228 ~~vv~an~~g~~~~~~~~G~S~I~~p~G~vla~~~~~~e~vl~a~iDl~~~~~~R~~~~~~~~~rr~~~ 296 (303)
T 1uf5_A 228 AWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQH 296 (303)
T ss_dssp CEEEEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHHCCGGG
T ss_pred CEEEECCCCCCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCCHHHCCCHHH
T ss_conf 303313641213362073674899599999987689988799999858999999975885132478536
No 12
>1j31_A Hypothetical protein PH0642; alpha-beta-BETA-alpha sandwich, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii OT3} SCOP: d.160.1.2
Probab=100.00 E-value=0 Score=343.00 Aligned_cols=250 Identities=22% Similarity=0.255 Sum_probs=209.2
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 58999960674168899999999999999967996998264003788812333106889-----9999999999998652
Q T0542 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFV-----EASRTALRELAARLAE 79 (590)
Q Consensus 5 mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~-----~~~~~~l~~la~~~~~ 79 (590)
||||++|++|.++|++.|++++.+++++|+++|||||||||++++||++.+......+. ......+..++++
T Consensus 2 ~kia~~Q~~~~~~d~~~nl~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~--- 78 (262)
T 1j31_A 2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMELARE--- 78 (262)
T ss_dssp EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHHHHH---
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH---
T ss_conf 79999978998779999999999999999988998999488765678602367888766643798999999999998---
Q ss_pred HCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCHHHCCCCCC-CCEEEECCEEE
Q ss_conf 01088189983211035543344457882388999981881799873277079876430122016996-10688678578
Q T0542 80 EGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDT-MPIVRLHGVDI 158 (590)
Q Consensus 80 ~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~-~~v~~~~g~ri 158 (590)
.++.+++|.++.. ++++||+++++.+|+++..|+|+||+. .|.++|.||+. +.+|+++++|+
T Consensus 79 ---~~i~i~~g~~~~~----------~~~~~n~~~l~~~g~~i~~~~K~~l~~----~~~~~~~~G~~~~~v~~~~~~~i 141 (262)
T 1j31_A 79 ---LGLYIVAGTAEKS----------GNYLYNSAVVVGPRGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKV 141 (262)
T ss_dssp ---HTCEEEEEEEEEE----------TTEEEEEEEEEETTEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEE
T ss_pred ---CCEEEEEEEEEEC----------CCCCCCCEEEEEECCEEEEEEEECCCC----CCCEEECCCCCCCEEEEECCCEE
T ss_conf ---0928997666612----------753432017998443788850021465----66225778998855899689669
Q ss_pred EEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCEEECC
Q ss_conf 85620234144189999996379789983278765783899999999999860726445631278887478467278847
Q T0542 159 ALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDR 238 (590)
Q Consensus 159 Gi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~~~vf~G~S~Iidp 238 (590)
|++||+|.||+ +..+.++.+||+++++|++++... |...+++||.||++|++++|.+|.+++..|+|+|+|++|
T Consensus 142 g~~IC~D~~~p-e~~r~~a~~ga~li~~p~~~~~~~-----~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p 215 (262)
T 1j31_A 142 GVMICFDWFFP-ESARTLALKGAEIIAHPANLVMPY-----APRAMPIRALENRVYTITADRVGEERGLKFIGKSLIASP 215 (262)
T ss_dssp EECCGGGGGSH-HHHHHHHHTTCSEEEEECCCCSSC-----HHHHHHHHHHHHTCEEEEECCCSEETTEECCCCCEEECT
T ss_pred EEEECCCCCCC-HHHHHHHHHCCCCEEECCCCCHHH-----HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 99962442471-899999874456177415463365-----655688887635875999965554689543567789909
Q ss_pred CCCEEECCCCCCCCEEEEEEEHHHHHHCCCC--CCCCCCCCCCC
Q ss_conf 8834321789986479998624676511455--54223443211
Q T0542 239 DGEVVARAPQFSEGCVVLDLDLPAAEAEPPT--GVVDDGLRIDR 280 (590)
Q Consensus 239 ~G~ila~~~~f~e~il~~diDl~~~~~~r~~--~~~~~~~~~~~ 280 (590)
+|+++++++.++|+++++|+|++.++..|.. .....++|++.
T Consensus 216 ~G~v~~~~~~~~e~~~~~~iDl~~~~~~r~~~~~~~~~~rr~dl 259 (262)
T 1j31_A 216 KAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREEY 259 (262)
T ss_dssp TSCEEEECCSSCCEEEEEEECHHHHHCCEEETTEETTTTCCGGG
T ss_pred CCCEEEECCCCCCEEEEEEEECHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 99889875899877999999846989998754387055387202
No 13
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=0 Score=339.29 Aligned_cols=270 Identities=21% Similarity=0.188 Sum_probs=217.5
Q ss_pred CC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-84589999606741688999999999999999679969982640037888123331068899999999999998652
Q T0542 1 MS-LQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAE 79 (590)
Q Consensus 1 Ms-~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~ 79 (590)
|+ .++|||++|+++. +|+++|++++++++++|+++|||||||||++++||.+.+.....+... ....++.+++ .
T Consensus 10 m~~~~~rVA~~Q~~~~-~d~~~Nl~~~~~li~~Aa~~gadLVvfPE~~~~~~~~~~~~~~~a~~~-~~~~~~~l~~---~ 84 (440)
T 1ems_A 10 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT-DCEYMEKYRE---L 84 (440)
T ss_dssp CCCSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHH-HHHHHHHHHH---H
T ss_pred CCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCHHHHHHHH---H
T ss_conf 3656838999979898-799999999999999999783969996888402288966765430017-8299999999---9
Q ss_pred HCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCC-----CCCCCCHHHCCCCCC-CCEEE
Q ss_conf 01088189983211035543344457882388999981-881799873277079-----876430122016996-10688
Q T0542 80 EGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPN-----YGVFDEFRYFVPGDT-MPIVR 152 (590)
Q Consensus 80 ~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~-----~~~~~E~r~f~~G~~-~~v~~ 152 (590)
+...++.+++|+++..... .++++||++++|. +|+++..|+|.|++. ...+.|.+||.+|.. .++|+
T Consensus 85 A~~~~i~iv~G~~~~~~~~------~~~~~yNs~~vi~~~G~i~~~~rK~~~~~~~~~~~~~~~e~~~~~~G~~~~~v~~ 158 (440)
T 1ems_A 85 ARKHNIWLSLGGLHHKDPS------DAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVD 158 (440)
T ss_dssp HHHTTCEEEEEEEEEEETT------EEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEE
T ss_pred HHHHCCEEEECCEEEECCC------CCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 9973999998435766368------8860799999994588588765022357757899753021013148987540498
Q ss_pred ECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCC-CEEEEC
Q ss_conf 6785788562023414418999999637978998327876578389999999999986072644563127888-747846
Q T0542 153 LHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQD-ELVFDG 231 (590)
Q Consensus 153 ~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~-~~vf~G 231 (590)
++++|||++||||.||+ +..+.++.+|+++|++|++|+...+ ..+|..+.++||.||+||+++||.+|.++ ...|+|
T Consensus 159 ~~~griG~lIC~D~~fp-e~~r~~a~~Ga~ii~~psa~~~~~~-~~~~~~~~~aRA~En~~~Vv~an~~G~~~~~~~~~G 236 (440)
T 1ems_A 159 TPIGRLGLSICYDVRFP-ELSLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYG 236 (440)
T ss_dssp ETTEEECCCCGGGGGCH-HHHHHHHHTTCSEEECCBCCCHHHH-HHHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEEC
T ss_pred ECCCEEEEEECCCCCCH-HHHHHHHHCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
T ss_conf 18945998843365684-9999998779839999078888745-999999999999986977999987205599756733
Q ss_pred CCEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 72788478834321789986479998624676511455542234432111133
Q T0542 232 DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVIS 284 (590)
Q Consensus 232 ~S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~~~~~~~~ 284 (590)
+|+|++|+|+++++++. +|+++++|||++.++..|...++..++|++.+...
T Consensus 237 ~S~Ii~P~G~ila~~~~-~e~il~adiDl~~~~~~R~~~~~~~~rRpdly~l~ 288 (440)
T 1ems_A 237 HSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYTLH 288 (440)
T ss_dssp CCEEECTTSCEEEECCS-SSCEEEEEEEHHHHHHHHHHSCGGGSCCTTTCCCC
T ss_pred EEEEECCCCCEEEECCC-CCEEEEEEECHHHHHHHHHHCCCHHHCCCCCEEEE
T ss_conf 47999299868886599-98499999728999999974984233872016888
No 14
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=0 Score=337.50 Aligned_cols=254 Identities=17% Similarity=0.202 Sum_probs=204.3
Q ss_pred CCEEEEEEECCC----CCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 845899996067----416889999999999999996--79969982640037888123331068---899999999999
Q T0542 3 LQLRLALNQIDS----TVGDIAGNAEAILRWTRHSAE--QGAHLVAFPEMALTGYPVEDLALRSS---FVEASRTALREL 73 (590)
Q Consensus 3 ~~mkIAlaQ~~~----~~gD~~~N~~ki~~~i~~A~~--~gadLVVfPEl~ltGY~~~Dl~~~~~---~~~~~~~~l~~l 73 (590)
.+++||++|.+. ..+++..|+++|.+++++|++ .|||||||||++++||++.+....+. ......+.+.++
T Consensus 11 ~~v~Va~vQ~~~p~~~~~~~v~~N~~~i~~~i~~a~~~~~GadLVVfPE~~l~Gy~~~~~~~~~~a~~~~~~~~~~l~~~ 90 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRA 90 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 82699999668777588899999999999999999726999879997988523688785777776664687799999999
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf 99865201088189983211035543344457882388999981-88179987327707987643012201699610688
Q T0542 74 AARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVR 152 (590)
Q Consensus 74 a~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~~~v~~ 152 (590)
++. . ++++++|...... ....++.+||++++|+ +|+++++|+|+|++. .|.+||.+|+.+.+|+
T Consensus 91 a~~---~---~~~~v~~~~g~~~-----~~~~~~~~yNsa~li~~~G~i~~~yrK~~p~~----~~~~~~~~g~~~~v~~ 155 (341)
T 2uxy_A 91 CRK---A---NVWGVFSLTGERH-----EEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC----PIEGWYPGGQTYVSEG 155 (341)
T ss_dssp HHH---H---TCEEEEEEEEECC-----TTTTSSCCEEEEEEECTTSCEEEEEECSSCCT----TTCCCBCCCCCCCEEC
T ss_pred HHH---C---CCEEEEEECCCCC-----EECCCCCEEEEEEEEECCCEEEEEEEECCCCC----CCEEECCCCCCEEEEE
T ss_conf 986---4---8557864024331-----25799847989999908961998886212257----5125527886201451
Q ss_pred ECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECC
Q ss_conf 67857885620234144189999996379789983278765783899999999999860726445631278887478467
Q T0542 153 LHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGD 232 (590)
Q Consensus 153 ~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~~~vf~G~ 232 (590)
++++|||++||+|.|| ++..|.++.+||++|++|++|++.. .++|..+.++||.+|++|++++|++|.++...|.|+
T Consensus 156 ~~g~kig~~IC~D~~f-PE~~r~~a~~GAelil~psa~~~~~--~~~~~~~~~arA~eN~~~vv~aN~~G~~~~~~~~G~ 232 (341)
T 2uxy_A 156 PKGMKISLIIXDDGNY-PEIWRDCAMKGAELIVRCQGYMYPA--KDQQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGH 232 (341)
T ss_dssp GGGCEEEEEEGGGGGS-HHHHHHHHHTTCSEEEEEECCBTTC--HHHHHHHHHHHHHHHTCEEEEEECEEECSSCEEECC
T ss_pred CCCCEEEEEECCCCCC-CHHHHHHHHCCCEEEEECCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEECCE
T ss_conf 2586788656344346-0999988764973999825578876--316664899999983983999920237999516322
Q ss_pred CEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCC
Q ss_conf 278847883432178998647999862467651145554223
Q T0542 233 SIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDD 274 (590)
Q Consensus 233 S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~ 274 (590)
|+|++|+|+++++++.++|+++++|||++.++..|..+....
T Consensus 233 S~Ii~p~G~vl~~~~~~ee~i~~aeiDl~~~r~~R~~~~~~n 274 (341)
T 2uxy_A 233 SAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQN 274 (341)
T ss_dssp CEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTTC
T ss_pred EEEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCHHH
T ss_conf 599889983988878998789999942899999987287066
No 15
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=0 Score=331.94 Aligned_cols=263 Identities=24% Similarity=0.249 Sum_probs=216.9
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99845899996067416889999999999999996799699826400378881233310-68899999999999998652
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR-SSFVEASRTALRELAARLAE 79 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~-~~~~~~~~~~l~~la~~~~~ 79 (590)
|+ ++|||++|+++ .+|+++|++++++++++|+++|||||||||+++|||.+.++... ..+.....+.+.+++.+
T Consensus 1 m~-~~kvA~~Q~~~-~~~~~~N~~~~~~li~~A~~~gadlvvfPE~~ltgy~~~~~~~~~~~~~~~~~~~l~~~A~~--- 75 (276)
T 2w1v_A 1 MS-TFRLALIQLQV-SSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKE--- 75 (276)
T ss_dssp CC-EEEEEEEECCC-CSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHH---
T ss_pred CC-CEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH---
T ss_conf 99-76999997858-99999999999999999998849799978786568987899988776788999999999886---
Q ss_pred HCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEC-CEEEEEECCEECCCC-----CCCCCHHHCCCCCCCCEEEE
Q ss_conf 010881899832110355433444578823889999818-817998732770798-----76430122016996106886
Q T0542 80 EGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHR-GRVALTFAKHHLPNY-----GVFDEFRYFVPGDTMPIVRL 153 (590)
Q Consensus 80 ~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~~-G~ii~~y~K~~Lp~~-----~~~~E~r~f~~G~~~~v~~~ 153 (590)
.++.+++|..... .++++||++++|.+ |+++..|+|++++.. ..+.+.++|.+|+...+|++
T Consensus 76 ---~~i~iv~G~~~~~---------~~~~~yNsa~~i~~~g~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~G~~~~v~~~ 143 (276)
T 2w1v_A 76 ---SSIYLIGGSIPEE---------DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDT 143 (276)
T ss_dssp ---HTSEEECCCEEEE---------ETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEEC
T ss_pred ---CCCEEEEEEEEEC---------CCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---6908998532020---------2586513689864887510155202346654543211223345679985332235
Q ss_pred CCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC-CCEEEECC
Q ss_conf 78578856202341441899999963797899832787657838999999999998607264456312788-87478467
Q T0542 154 HGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVFDGD 232 (590)
Q Consensus 154 ~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e-~~~vf~G~ 232 (590)
+++++|++||||.|++ +..+.++.+|++++++|++++...+ ..+|....+.||.+|++|++++|++|.. +...|+|+
T Consensus 144 ~~~kig~~IC~D~~~p-e~~r~l~~~g~~~i~~~~a~~~~~~-~~~~~~~~~~~A~en~~~vv~~n~~G~~~~~~~~~G~ 221 (276)
T 2w1v_A 144 PYCKVGLGICYDMRFA-ELAQIYAQRGCQLLVYPGAFNLTTG-PAHWELLQRARAVDNQVYVATASPARDDKASYVAWGH 221 (276)
T ss_dssp SSCEEEECCGGGGGCH-HHHHHHHHTTEEEEEEECCCCTTHH-HHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCC
T ss_pred CCCEEEEEEEEECCCH-HHHHHHHHCCCCEEEECCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCC
T ss_conf 7632531454202485-9999999869988974576787753-7788889999999739659997255478888576666
Q ss_pred CEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 278847883432178998647999862467651145554223443211113
Q T0542 233 SIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVI 283 (590)
Q Consensus 233 S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~~~~~~~ 283 (590)
|+|++|+|+++++++. +|+++++|||++.++..|...++..++|.+.+..
T Consensus 222 S~I~~p~G~ila~~~~-~e~i~~a~idl~~~~~~R~~~~~~~~~r~~ly~~ 271 (276)
T 2w1v_A 222 STVVDPWGQVLTKAGT-EETILYSDIDLKKLAEIRQQIPILKQKRADLYTV 271 (276)
T ss_dssp CEEECTTSCEEEECCS-SSEEEEEEEEHHHHHHHHHHSCGGGSCCTTTEEE
T ss_pred EEEECCCCCEEEECCC-CCEEEEEEECHHHHHHHHHHCCCHHHCCCCCEEE
T ss_conf 1998899988863499-8759999985899999998687043288510003
No 16
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori 26695} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=0 Score=333.98 Aligned_cols=256 Identities=16% Similarity=0.205 Sum_probs=205.1
Q ss_pred CCEEEEEEECCCCC----CCHHHHHHHHHHHHHH--HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84589999606741----6889999999999999--99679969982640037888123331068899999999999998
Q T0542 3 LQLRLALNQIDSTV----GDIAGNAEAILRWTRH--SAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAAR 76 (590)
Q Consensus 3 ~~mkIAlaQ~~~~~----gD~~~N~~ki~~~i~~--A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~ 76 (590)
..++||++|+++.+ .|++.|+++|.+++++ |...|+|||||||++++||++.+..............++.+++.
T Consensus 12 ~~~~va~vQ~~v~~~~~~~d~~~n~~~i~~~i~~~~A~~~GadLvV~PE~~l~Gy~~~~~~~~~~~~~~~g~~~~~l~~~ 91 (334)
T 2dyu_A 12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKA 91 (334)
T ss_dssp -CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 42289999668777888899999999999999998615689979997888644588314565888776885999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCCCCCHHHCCCCCCCCEEEECC
Q ss_conf 65201088189983211035543344457882388999981-88179987327707987643012201699610688678
Q T0542 77 LAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHG 155 (590)
Q Consensus 77 ~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~~~v~~~~g 155 (590)
.. ..++++++|.+++..+ .++++||++++|. +|+++++|+|+|++. .|..||..+..+++|++.+
T Consensus 92 a~---~~~i~i~~g~~e~~~~-------~~~~~yNsa~vi~~~G~i~~~y~K~~p~~----~~~~~~~g~~~~~v~~t~~ 157 (334)
T 2dyu_A 92 CK---EAKVYGVFSIMERNPD-------SNKNPYNTAIIIDPQGEIILKYRKLFPWN----PIEPWYPGDLGMPVCEGPG 157 (334)
T ss_dssp HH---HHTCEEEEEEEECCSS-------TTSCCEEEEEEECTTSCEEEEEECSSCCT----TTCCCCCCCSCCCCEECGG
T ss_pred HH---HCCEEEEEECCEECCC-------CCCCEEEEEEEECCCCEEEEEEEECCCCC----HHHCCCCCCCCCEEEECCC
T ss_conf 98---7696999733164258-------89847888999879977999997436786----0214466666640255258
Q ss_pred -EEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCE
Q ss_conf -5788562023414418999999637978998327876578389999999999986072644563127888747846727
Q T0542 156 -VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSI 234 (590)
Q Consensus 156 -~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~~~vf~G~S~ 234 (590)
.|||++||||.|| ++..|.++.+||++|++|++|+... .++|..+.++||.||++|++++|++|.++...|.|+|+
T Consensus 158 G~kiG~~IC~D~~f-Pe~~r~~a~~GAdlil~~s~~~~~~--~~~~~~~~rarA~en~~~vv~aN~~G~~~~~~~~G~S~ 234 (334)
T 2dyu_A 158 GSKLAVCICHDGMI-PELAREAAYKGCNVYIRISGYSTQV--NDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQ 234 (334)
T ss_dssp GCEEEEEEGGGGGC-HHHHHHHHHTTCSEEEEEESSCTTS--HHHHHHHHHHHHHHHTCEEEEEECSBSSSSCCCCCEEE
T ss_pred CCEEEEEEECCCCC-HHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEE
T ss_conf 85899999605347-6999999988997899935799985--15777578999997697599990554269968864459
Q ss_pred EECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCC
Q ss_conf 88478834321789986479998624676511455542234
Q T0542 235 VVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDG 275 (590)
Q Consensus 235 Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~ 275 (590)
|++|+|+++++++.++|+++++|||++.++..|..+.+..+
T Consensus 235 I~~p~G~vla~~~~~~e~i~~aeidl~~~~~~R~~~~~~n~ 275 (334)
T 2dyu_A 235 ICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENN 275 (334)
T ss_dssp EECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTCH
T ss_pred EECCCCCEEEECCCCCCEEEEEEEEHHHHHHHHHCCCHHHH
T ss_conf 99899869988279998899999888999999970341211
No 17
>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=0 Score=334.24 Aligned_cols=253 Identities=22% Similarity=0.191 Sum_probs=209.3
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99845899996067416889999999999999996799699826400378881233310688999999999999986520
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEE 80 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~ 80 (590)
|+ +||||++|+++.++|+++|++++.+++++| ++|+|||||||++++||++.++-..........+.+.+++++
T Consensus 1 m~-~mkial~Q~~~~~~d~~~Nl~~~~~~i~~a-~~gadlvv~PE~~l~gy~~~~~~~a~~~~~~~~~~l~~~a~~---- 74 (266)
T 2e11_A 1 MH-DLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAAR---- 74 (266)
T ss_dssp CC-CEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHH----
T ss_pred CC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH----
T ss_conf 99-639999868999879999999999999997-289989997888403798689986442357799999999998----
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCHHHCCCCCCCCEEEECCEEEEE
Q ss_conf 10881899832110355433444578823889999818817998732770798764301220169961068867857885
Q T0542 81 GFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIAL 160 (590)
Q Consensus 81 ~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~~G~ii~~y~K~~Lp~~~~~~E~r~f~~G~~~~v~~~~g~riGi 160 (590)
.++.+++|.++... +++||+++++.+++.+..|+|.||++++ .|.++|.+|+...+|+++++|+|+
T Consensus 75 --~~i~i~~g~~~~~~----------~~~yNs~~~i~~~G~i~~y~K~~l~~~~--~~~~~~~~G~~~~vf~~~~~kig~ 140 (266)
T 2e11_A 75 --LGAAITGSVQLRTE----------HGVFNRLLWATPDGALQYYDKRHLFRFG--NEHLRYAAGRERLCVEWKGWRINP 140 (266)
T ss_dssp --HTSEEEEEEEEEET----------TEEEEEEEEECTTSCEEEEECSSCCGGG--TTTTTSBCCCSCCCEEETTEEEEE
T ss_pred --CCCEEEEEEEEECC----------CEEEEEEEEECCCCEEEEEEECCCCCCC--CEEEEECCCCCCEEEEECCCCCCC
T ss_conf --59669998899619----------9168877650799508888731467764--304676289841567752742342
Q ss_pred EEEHHHHCCHHHHHHH------HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCC-CEEEECCC
Q ss_conf 6202341441899999------9637978998327876578389999999999986072644563127888-74784672
Q T0542 161 AICEDLWQDGGRVPAA------RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQD-ELVFDGDS 233 (590)
Q Consensus 161 ~IC~D~w~~~~~~~~l------a~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e~-~~vf~G~S 233 (590)
+||||.|||+ ..|.+ +..+++++++|+.++. .+...|..+.++||.||++|++++|++|.++ ...|.|+|
T Consensus 141 ~IC~D~~fpe-~~r~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~G~S 217 (266)
T 2e11_A 141 QVCYDLRFPV-FCRNRFDVERPGQLDFDLQLFVANWPS--ARAYAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDS 217 (266)
T ss_dssp EEGGGGGCTT-TTCCCBSSSSTTSBSCSEEEEEECCCG--GGHHHHHHHHHHHHHHTTSEEEEEECEEECTTSCEEEEEE
T ss_pred EECCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCE
T ss_conf 1634765738-999988764222202131001001577--6412343078899877499679751454458866663644
Q ss_pred EEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCC
Q ss_conf 78847883432178998647999862467651145554223443
Q T0542 234 IVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLR 277 (590)
Q Consensus 234 ~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~ 277 (590)
+|++|+|+++++++. +|+++++|||++.++..|...+...+++
T Consensus 218 ~Ii~p~G~ila~~~~-~e~~~~a~id~~~~~~~R~~~p~l~d~~ 260 (266)
T 2e11_A 218 AVIDFLGQPQVEIRE-QEQVVTTTISAAALAEHRARFPAMLDGD 260 (266)
T ss_dssp EEECTTSCEEEEEES-SCEEEEEEECHHHHHHHHHHSCGGGGCC
T ss_pred EEEECCCCEEEECCC-CCEEEEEEECHHHHHHHHHHCCHHHHCC
T ss_conf 999299869998699-9869999986899999999786054189
No 18
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=0 Score=322.66 Aligned_cols=267 Identities=19% Similarity=0.214 Sum_probs=214.8
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 998458999960674168899999999999999967--99699826400378881233310688999--99999999998
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQ--GAHLVAFPEMALTGYPVEDLALRSSFVEA--SRTALRELAAR 76 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~--gadLVVfPEl~ltGY~~~Dl~~~~~~~~~--~~~~l~~la~~ 76 (590)
|++|||||++|+++..+|++.|++++++++++|+++ |++||||||+++|||++.+......++.. ....++.+.+.
T Consensus 7 ~~~~ikvA~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~~~~a~LvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (291)
T 1f89_A 7 LSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNL 86 (291)
T ss_dssp BSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHH
T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 00572899996778878999999999999999985089985998987545789878898878886422897999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCEECCCCCC-----CCCHHHCCCCCCCCE
Q ss_conf 65201088189983211035543344457882388999981-881799873277079876-----430122016996106
Q T0542 77 LAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGV-----FDEFRYFVPGDTMPI 150 (590)
Q Consensus 77 ~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~ii~~y~K~~Lp~~~~-----~~E~r~f~~G~~~~v 150 (590)
+...++.+++|...... ..++++||++++|. +|+++.+|+|+|++.+.. ++|..++.++....+
T Consensus 87 ---A~~~~i~iv~G~~~~~~-------~~~~~~yNs~~~i~~~G~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (291)
T 1f89_A 87 ---ANKFKIILVGGTIPELD-------PKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTT 156 (291)
T ss_dssp ---HHHSSCEEECCCEEEEC-------TTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEE
T ss_pred ---HHHCCCEEEEEEEEEEE-------CCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCE
T ss_conf ---99739779840267752-------78997999999982377425543034332113566666331022058864320
Q ss_pred EEECCEEEEEEEEHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC-CCEEE
Q ss_conf 88678578856202341441899999963797899832787657838999999999998607264456312788-87478
Q T0542 151 VRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVF 229 (590)
Q Consensus 151 ~~~~g~riGi~IC~D~w~~~~~~~~la~~Gadlii~psasp~~~~~~~~r~~~~~~rA~e~~~~vv~aN~vG~e-~~~vf 229 (590)
+++.++++|++||+|.|+ ++..+.++.+|++++++|++++... ....|....+++|.++++|++++|.+|+. +...|
T Consensus 157 ~~~~~~~~g~~iC~d~~~-p~~~r~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~A~e~~~~vv~~n~~g~~~~~~~~ 234 (291)
T 1f89_A 157 IDTKYGKFGVGICYDMRF-PELAMLSARKGAFAMIYPSAFNTVT-GPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHA 234 (291)
T ss_dssp EEETTEEEEECCGGGGGC-HHHHHHHHHTTEEEEEEECCCBTTH-HHHHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCB
T ss_pred ECCCCCCCCCCCCCCCCC-HHHHHHHHHCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEE
T ss_conf 034873513343334248-6999999978995999878887877-61230104666888557079998440267788611
Q ss_pred ECCCEEECCCCCEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 467278847883432178998647999862467651145554223443211
Q T0542 230 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDR 280 (590)
Q Consensus 230 ~G~S~Iidp~G~ila~~~~f~e~il~~diDl~~~~~~r~~~~~~~~~~~~~ 280 (590)
.|+|+|++|+|+++++++. +|+++++|||+++++..|.+.++..++|++.
T Consensus 235 ~G~S~Ii~p~G~vl~~~~~-~e~i~~adiDl~~~~~~r~~~~~~~~rr~~l 284 (291)
T 1f89_A 235 YGHSIVVDPRGKIVAEAGE-GEEIIYAELDPEVIESFRQAVPLTKQRRFDV 284 (291)
T ss_dssp CCCCEEECTTSCEEEECCS-SSEEEEEEECHHHHHHHHHHSCCCCCCCC--
T ss_pred CCCEEEEECCCCEEEECCC-CCEEEEEEECHHHHHHHHHHCCCHHHCCHHH
T ss_conf 5643999399978988899-9839999986899999999687143388535
No 19
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=189.31 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 57889999999999984156834897058836899999998516955179887788898287799999999971984798
Q T0542 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRT 386 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~ 386 (590)
+...+-++..+++. .|.+++|+|||||+||||+|+||++|+|+++|++++||...+++...++|+.+++.||+++..
T Consensus 224 ~~~i~~~i~~Ire~---vG~kkVVvgLSGGVDSTV~AaLa~kAlG~e~V~al~vd~G~~r~~E~e~a~~va~~lGI~~~v 300 (697)
T 2vxo_A 224 QNRELECIREIKER---VGTSKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKV 300 (697)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHH---HCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999997---488836861468876899999999962888199999168779824799999999985996799
Q ss_pred ECHHHHHHHHHHHCC---------------CCC--CH------HHHHHHHHHHHHHHHHHHHHCCEEEECC---------
Q ss_conf 345999999998618---------------357--40------6655565789999999976197898748---------
Q T0542 387 VSIEPMFDAYMASLG---------------LTG--LA------EENLQSRLRGTTLMAISNQEGHIVLAPG--------- 434 (590)
Q Consensus 387 i~i~~~~~~~~~~~~---------------~~~--~~------~~N~qaR~R~~~l~~~a~~~~~lvl~t~--------- 434 (590)
+++++.+......+. ..+ -. ..|.-+|++...+..++...+...|.+|
T Consensus 301 VD~s~~F~~~~~~~~~~~~~~~~~~~~~~~L~gv~dpE~kRkiIg~~F~~vf~~~~~~~a~~~~~~~LaqGT~ypD~iES 380 (697)
T 2vxo_A 301 INAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIES 380 (697)
T ss_dssp EECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCC
T ss_pred EECCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 91838875313233321012233210456642577667752004589999999999987524698499963120301234
Q ss_pred ------------CHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC--CCC
Q ss_conf ------------667775520333067711122306887889999999861002111332135377725888866--678
Q T0542 435 ------------NKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE--LRP 500 (590)
Q Consensus 435 ------------n~sE~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psae--L~~ 500 (590)
+..+..+|++|++||...++.||++|+|++|++|++.++ +|++|+.|+|-|. |..
T Consensus 381 ~~~~~~~~a~~ikshhnv~Gl~~k~gd~~~~vePL~dL~KdEVR~LG~eLG-----------lP~eIv~R~PFPGPGLai 449 (697)
T 2vxo_A 381 ASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELG-----------LPEELVSRHPFPGPGLAI 449 (697)
T ss_dssp HHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTT-----------CCHHHHTCCCCCTTGGGG
T ss_pred CCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHC-----------CCHHHCCCCCCCCCCEEE
T ss_conf 543345653126666565063123266541141045886999999999819-----------999991089989997468
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---88860025786689999999985
Q T0542 501 ---GQVDTDSLPDYPVLDAILELYVD 523 (590)
Q Consensus 501 ---~q~de~~lg~y~~lD~~l~~~~~ 523 (590)
+--+++.+-.+...|.+++...+
T Consensus 450 Rilg~~~~~~~~~~~~~~~~~~~~~~ 475 (697)
T 2vxo_A 450 RVICAEEPYICKDFPETNNILKIVAD 475 (697)
T ss_dssp GBCCBSSCCCCTTHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 98235533331010345556654333
No 20
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A
Probab=99.94 E-value=3.9e-25 Score=182.81 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEE
Q ss_conf 88999999999998415683489705883689999999851695517988778889828-77999999999719847983
Q T0542 309 VYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSD-HSKGDAAELARRTGLNFRTV 387 (590)
Q Consensus 309 ~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~-~~~~~a~~la~~lg~~~~~i 387 (590)
+.+-.+..|++.+ |.+++++|+|||+||||+|+||.+|+| +||+||+||+...+. +..+.++.+++.+++.+..+
T Consensus 6 fie~~I~~ir~~v---g~~kVvvalSGGVDSsV~A~L~~kAlG-~~v~aV~~d~g~~~~~E~~~~~~~~~~~~~i~~~~v 81 (308)
T 2dpl_A 6 FVEEKVREIRETV---GDSKAIIALSGGVDSSTAAVLAHKAIG-DRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYV 81 (308)
T ss_dssp HHHHHHHHHHHHH---TTSCEEEECCSSHHHHHHHHHHHHHHG-GGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 9999999999983---899899990688999999999999758-877999958987885389999996541257424897
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECC----CHHHHHHHHHHHCCCCC-------CCHHH
Q ss_conf 45999999998618357406655565789999999976197898748----66777552033306771-------11223
Q T0542 388 SIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG----NKSELAVGYSTLYGDSV-------GAYGP 456 (590)
Q Consensus 388 ~i~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~----n~sE~~lG~~t~~Gd~~-------~~~~p 456 (590)
++...+....+... ..-...++-.+.|+..++..|...|.-.+.+| |..|...|+.|.++|+. ..+.|
T Consensus 82 d~~~~~~~~l~~~~-~p~~k~~~~g~~~~~~l~~~a~~~g~~~l~~Gt~~~D~iE~~~gikt~~n~ggl~~~~~~~~ieP 160 (308)
T 2dpl_A 82 DAQDRFFSALKGVT-DPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEP 160 (308)
T ss_dssp ECHHHHHHHTTTCC-CHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC---------------------CCCEEECT
T ss_pred EHHHHHHHHHCCCC-CHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCEEECCHHHCCCCCEEEECCCCCHHHHCCCCCCC
T ss_conf 30455545431789-96897434085057789999998499624033021130110343144413677255410343450
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0688788999999986100211133213537772588886667-----888860025786689999999985
Q T0542 457 IKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELR-----PGQVDTDSLPDYPVLDAILELYVD 523 (590)
Q Consensus 457 ~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psaeL~-----~~q~de~~lg~y~~lD~~l~~~~~ 523 (590)
|++|||++|++||+.++ +|+.+++|||+|.+. .+.-+++.+...+..|.|+...+.
T Consensus 161 L~~L~K~EVR~la~~LG-----------lp~~i~~r~p~pgp~~~i~~~~~it~e~l~~~~~ad~i~~~~~~ 221 (308)
T 2dpl_A 161 LRDLYKDEVRELAKFLG-----------LPEKIYNRMPFPGPGLAVRVIGEVTPEKIRIVREANAIVEEEVE 221 (308)
T ss_dssp TTTCCHHHHHHHHHHTT-----------CCHHHHTCCCCCTTGGGGGBSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----------CCHHHHHCCCCCCHHHHCCCCCCEEHHHCCHHHHHHHHHHHHHH
T ss_conf 68772889999999809-----------96777514662102232013640002010014888999999999
No 21
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Probab=99.87 E-value=1.7e-20 Score=152.31 Aligned_cols=196 Identities=18% Similarity=0.174 Sum_probs=142.3
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 99999984156834897058836899999998516955179887788898287799999999971984798345999999
Q T0542 316 GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDA 395 (590)
Q Consensus 316 ~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 395 (590)
.+.+--++.|.+++++++|||+||+++|+|+.++.+ +|+++++++....+...++|+++|+.+|+++.++++++.+..
T Consensus 199 ~i~~i~~~~~~~kVvv~lSGGVDSsV~A~L~~~ag~--~v~av~vd~G~~~~~E~e~a~~~a~~lGI~~~vvd~~~~F~~ 276 (503)
T 2ywb_A 199 LLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGV--DHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLK 276 (503)
T ss_dssp HHHHHHHHHTTSEEEEEECSSHHHHHHHHHHHHHTC--EEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 999999983887589995687048999999998578--459999668989878999999999984995899887089988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC---E-------------EEECCCHHHHHHHHHHHCCCCCCC-HHHCC
Q ss_conf 998618357406655565789999999976197---8-------------987486677755203330677111-22306
Q T0542 396 YMASLGLTGLAEENLQSRLRGTTLMAISNQEGH---I-------------VLAPGNKSELAVGYSTLYGDSVGA-YGPIK 458 (590)
Q Consensus 396 ~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~---l-------------vl~t~n~sE~~lG~~t~~Gd~~~~-~~p~~ 458 (590)
......... ....+--+.+...+...|...+. + ..++.++.+...+++++++|.... +.|+.
T Consensus 277 ~l~~~~~pe-~kr~~~~~~f~~v~~~~A~~~~~~~~la~Gt~~~D~~e~~~~~~~~~~k~~~~~~~l~~~~~~~i~~PL~ 355 (503)
T 2ywb_A 277 ALKGVEDPE-EKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFR 355 (503)
T ss_dssp HHTTCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-----------------CCCSSCCCEEECTTT
T ss_pred HHHCCCCCC-CCEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCC
T ss_conf 541247873-3145412599999999998569978899895752124555555310455520000346200557215322
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC--CC---CCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 887889999999861002111332135377725888866--67---88886002578668999999998568
Q T0542 459 DVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE--LR---PGQVDTDSLPDYPVLDAILELYVDRD 525 (590)
Q Consensus 459 ~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psae--L~---~~q~de~~lg~y~~lD~~l~~~~~~~ 525 (590)
+|+|.+|++|++.++ +|++++.++|+|. |. +++-+++-|-.+...|.|+...+.+.
T Consensus 356 ~L~K~EVr~la~~LG-----------lP~eiv~r~Pfpgpgla~r~~~e~t~e~l~~~~~a~~~~~~~~~~~ 416 (503)
T 2ywb_A 356 LLFKDEVRELALLLG-----------LPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREW 416 (503)
T ss_dssp TCCHHHHHHHHHHTT-----------CCHHHHSCCCCCTTGGGGGBSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-----------CCHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 685999999999968-----------3989937799899970358720268899999988989999999864
No 22
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.56 E-value=7.6e-15 Score=115.00 Aligned_cols=148 Identities=21% Similarity=0.253 Sum_probs=101.5
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--------CCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 15683489705883689999999851695517988778889--------8287799999999971984798345999999
Q T0542 324 NGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKY--------SSDHSKGDAAELARRTGLNFRTVSIEPMFDA 395 (590)
Q Consensus 324 ~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~--------~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 395 (590)
...++|+||+|||+||||+|+|+.++ |-+ |+|++|-.-. .++.+.++|+.+|+.|||++.++|++..+..
T Consensus 15 ~~~kkV~v~mSGGVDSsvaa~LL~~~-G~e-V~gv~m~~~~~~~~~~~c~~~~d~~da~~va~~LgIp~~v~d~~~~f~~ 92 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ-GYQ-VEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWD 92 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT-CCE-EEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 56888999987869999999999876-995-9999998866888777788678999999999984997799787999877
Q ss_pred -----HHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECC--------------------CHHHHHHHHHHH
Q ss_conf -----998618----357406655565789999999976197898748--------------------667775520333
Q T0542 396 -----YMASLG----LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG--------------------NKSELAVGYSTL 446 (590)
Q Consensus 396 -----~~~~~~----~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~--------------------n~sE~~lG~~t~ 446 (590)
|..... +.--..=|..-+. ..+|...+...|.-.+.|| +|+..+.-|...
T Consensus 93 ~V~~~f~~~y~~G~TPNPcv~CN~~iKf-~~ll~~~~~~lg~d~iATGHYar~~~~~~~~~l~~a~D~~KDQSYfL~~l~ 171 (380)
T 2der_A 93 NVFELFLAEYKAGRTPNPDILCNKEIKF-KAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLS 171 (380)
T ss_dssp HTHHHHHHHHHTTCCCCHHHHHHHHTTT-THHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCC
T ss_pred HHHHHHHHHHHCCCCCCCCHHCCCHHHH-HHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 7766646988622576622210530124-579999997579987742356788658996678860575557315877411
Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 0677111223068878899999998610
Q T0542 447 YGDSVGAYGPIKDVYKTSIFRLAEWRNR 474 (590)
Q Consensus 447 ~Gd~~~~~~p~~~l~Kt~v~~la~~~~~ 474 (590)
.......+-|+++++|.+|+++|+-++-
T Consensus 172 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl 199 (380)
T 2der_A 172 HEQIAQSLFPVGELEKPQVRKIAEDLGL 199 (380)
T ss_dssp HHHHHHEECCGGGSCHHHHHHHHHHTTC
T ss_pred HHHHHCEECCCCCCCHHHHHHHHHHCCC
T ss_conf 5442027844324750689998877599
No 23
>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.51 E-value=4.9e-14 Score=109.68 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=100.0
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--------CCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 1568348970588368999999985169551798877888--------98287799999999971984798345999999
Q T0542 324 NGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK--------YSSDHSKGDAAELARRTGLNFRTVSIEPMFDA 395 (590)
Q Consensus 324 ~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~--------~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 395 (590)
+..++++||+|||+||||+|+|+.++ |-+ |+|++|-.- -.+..+..+|+.+|+.|||++.++|++..+..
T Consensus 7 ~~k~rv~v~mSGGVDSsvaa~lL~~~-G~~-V~gv~m~~w~~~~~~~~c~~~~d~~da~~va~~LgIp~~~~d~~~~f~~ 84 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKEQ-GYD-VIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWD 84 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHHT-TCE-EEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 87787999926879999999999976-995-7999997776777678777378899999999984997899673999988
Q ss_pred -----HHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH---HHHH------HCCCCCC-----
Q ss_conf -----99861----83574066555657899999999761978987486677755---2033------3067711-----
Q T0542 396 -----YMASL----GLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAV---GYST------LYGDSVG----- 452 (590)
Q Consensus 396 -----~~~~~----~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~l---G~~t------~~Gd~~~----- 452 (590)
|.+.. .+.-=..=|- ++.--.|+.+|...|.-.+.||+..-..- |.+- ..-|++-
T Consensus 85 ~V~~~f~~~y~~G~TPNPcv~CN~--~iKF~~l~~~a~~~g~d~iATGHYAri~~~~~g~~~l~~~~D~~KDQSYfL~~l 162 (376)
T 2hma_A 85 RVFEYFLAEYRAGRTPNPDVMCNK--EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQL 162 (376)
T ss_dssp HTHHHHHHHHHTTCCCCHHHHHHH--HTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTC
T ss_pred HHHHHHHHHHHCCCCCCCCEECCC--CCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEC
T ss_conf 887767999862479995401442--203589999987613220146726555787999788765256766721354331
Q ss_pred -------CHHHCCCCCHHHHHHHHHHHHH
Q ss_conf -------1223068878899999998610
Q T0542 453 -------AYGPIKDVYKTSIFRLAEWRNR 474 (590)
Q Consensus 453 -------~~~p~~~l~Kt~v~~la~~~~~ 474 (590)
.+=|+|+++|.+|+++|+-++-
T Consensus 163 ~~~~L~~~iFPLG~~~K~eVR~~A~~~gl 191 (376)
T 2hma_A 163 SQEQLQKTMFPLGHLEKPEVRRLAEEAGL 191 (376)
T ss_dssp CHHHHTTEECTTTTCCHHHHHHHHHHTTC
T ss_pred CHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 78688466688998867899999987495
No 24
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.46 E-value=2.7e-12 Score=98.20 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCE-----EEECHHHHHHHHHHHC
Q ss_conf 8348970588368999999985169551798877-888982877999999999719847-----9834599999999861
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSM-PSKYSSDHSKGDAAELARRTGLNF-----RTVSIEPMFDAYMASL 400 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~m-p~~~~s~~~~~~a~~la~~lg~~~-----~~i~i~~~~~~~~~~~ 400 (590)
.++++++|||+||+|+|.++.++ |. +|+++++ ....+++.+.+.++.+++.|++.+ ..++..+..+......
T Consensus 188 gKvlvllSGGiDS~Vaa~ll~k~-G~-~v~~v~~~~~~~~~~~~~e~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~ 265 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKR-GV-SVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEI 265 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHB-TE-EEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHC-CC-CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHC
T ss_conf 82899935786399999999974-99-77999997899898789999999999839971556557740788988875216
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC----HHHH--HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 83574066555657899999999761978987486----6777--55203330677111223068878899999998610
Q T0542 401 GLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGN----KSEL--AVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNR 474 (590)
Q Consensus 401 ~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n----~sE~--~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~~ 474 (590)
... ...++..|+|..+++.+|+..|+..+.||+ .++- .--+.+-.+....-+.|+.+++|.+|.++|+.++.
T Consensus 266 ~~~--~~~~~~rr~~~~~~~~~A~~~g~~~IvtG~~~~d~~~q~l~nl~~~~~~~~~~ilrPL~~~~K~EI~~~Ak~iG~ 343 (413)
T 2c5s_A 266 PSS--YSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGT 343 (413)
T ss_dssp CGG--GHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEECTTTTCCHHHHHHHHHHTTC
T ss_pred CCC--CCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCHHCCCHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 777--731678999999999999973998999688577421257998741420014225677619999999999998499
No 25
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.35 E-value=8e-11 Score=88.46 Aligned_cols=170 Identities=20% Similarity=0.262 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEE
Q ss_conf 57889999999999984156834897058836899999998516955179887788898-28779999999997198479
Q T0542 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYS-SDHSKGDAAELARRTGLNFR 385 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~-s~~~~~~a~~la~~lg~~~~ 385 (590)
+.+.+.++.-++..+ |-++|++|||||+||+|+|+|..+|+| +|++|++.-.-.- -.++.+--+.+.+.+|++..
T Consensus 211 ~~~~~~~i~~ir~~v---g~~kvi~~lSGGVDSsV~a~L~~kaig-~~l~~i~vd~GllR~~E~~~v~~~~~~~~~~~~~ 286 (525)
T 1gpm_A 211 AKIIDDAVARIREQV---GDDKVILGLSGGVDSSVTAMLLHRAIG-KNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIV 286 (525)
T ss_dssp HHHHHHHHHHHHHHH---TTCEEEEECCSSHHHHHHHHHHHHHHG-GGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEE
T ss_pred HHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHHHHC-CEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 999998999998641---884488840578524999999987605-4179999357764478779999999760588459
Q ss_pred EECHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHHHHHHHHHC---CEEEECC--CHHHHHHHHHH-----------
Q ss_conf 8345999999998618357406655565----78999999997619---7898748--66777552033-----------
Q T0542 386 TVSIEPMFDAYMASLGLTGLAEENLQSR----LRGTTLMAISNQEG---HIVLAPG--NKSELAVGYST----------- 445 (590)
Q Consensus 386 ~i~i~~~~~~~~~~~~~~~~~~~N~qaR----~R~~~l~~~a~~~~---~lvl~t~--n~sE~~lG~~t----------- 445 (590)
.+|-+..+-.-++. .+ ...-+-. .-.-+.-..|...+ +|+-||- |.-|.. |+.+
T Consensus 287 ~vda~~~Fl~~L~g--v~---dPE~KRkiIG~~Fi~vfe~~~~~~~~~~~L~QGTlypDvIES~-~~~~~~~~~IKsHHn 360 (525)
T 1gpm_A 287 HVPAEDRFLSALAG--EN---DPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA-ASATGKAHVIKSHHN 360 (525)
T ss_dssp EEECHHHHHHHHTT--CC---CHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT-C--------------
T ss_pred EEECCCCHHHCCCC--CC---CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHC-CCCCCCCCCEECCCC
T ss_conf 99452111220267--63---8678544300689999999974137974997055724145314-678999786121377
Q ss_pred ---HCCCCC-CCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf ---306771-1122306887889999999861002111332135377725888866
Q T0542 446 ---LYGDSV-GAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE 497 (590)
Q Consensus 446 ---~~Gd~~-~~~~p~~~l~Kt~v~~la~~~~~~~~~~~~~~~~p~~i~~~~psae 497 (590)
+.-++. --+-|+.+|+|-+|++|.++++ +|++++.+.|=|.
T Consensus 361 vgglp~~~~~~lvEPl~~lfKdeVr~~g~~Lg-----------lp~~~~~rhPfPG 405 (525)
T 1gpm_A 361 VGGLPKEMKMGLVEPLKELFKDEVRKIGLELG-----------LPYDMLYRHPFPG 405 (525)
T ss_dssp --------CCEEECTTTTCCHHHHHHHHHHTT-----------CCHHHHTSCCCCT
T ss_pred CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-----------CCHHHCCCCCCCC
T ss_conf 78567644663015899986799999999858-----------9666410289998
No 26
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=6.3e-12 Score=95.77 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=92.7
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH-HHHHCCCC
Q ss_conf 56834897058836899999998516955179887788898287799999999971984798345999999-99861835
Q T0542 325 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDA-YMASLGLT 403 (590)
Q Consensus 325 g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~-~~~~~~~~ 403 (590)
..-+++|++|||+||+++++++.+. |. +|+++++..... ...++|+.+|+.||+++.++++++.+.. ....+. .
T Consensus 5 k~~kv~V~~SGG~DS~~la~ll~~~-g~-~v~~~~~~~~~~--~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~-~ 79 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKKL-GY-NPHLITINFGVI--PSYKLAEETAKILGFKHKVITLDRKIVEKAADMII-E 79 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHT-TE-EEEEEEEECSSS--CTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHH-H
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CC-CEEEEEEECCCC--CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH-H
T ss_conf 3461899953768999999999972-99-769999679986--37999999999846962999788999988899998-4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCC-------CCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7406655565789999999976197898748667775520333067-------711122306887889999999861
Q T0542 404 GLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGD-------SVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
Q Consensus 404 ~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd-------~~~~~~p~~~l~Kt~v~~la~~~~ 473 (590)
+...++...++|-..+...|+. .-++-||+..+-.++...+.+. ....+.|+.+++|.+++++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~a~~--~~~i~tG~~~dd~~~~~~~~~~~~~~~~~~~~~irPL~~~~k~ei~~~a~~~~ 154 (203)
T 3k32_A 80 HKYPGPAIQYVHKTVLEILADE--YSILADGTRRDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRHLASEFF 154 (203)
T ss_dssp HSSSHHHHHHHHHHHHHHHTTT--CSEEECCCCTTCCSSCCCHHHHHHHHHHHTCEEECGGGGCCHHHHHHHHHHHE
T ss_pred CCCCCHHHHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 4991399999999999987615--89863078534443003132033656322431136124888999999999818
No 27
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.05 E-value=1.7e-09 Score=79.68 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCC
Q ss_conf 68348970588368999999985169551798877888982877999999999719847983459999999986183574
Q T0542 326 FRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGL 405 (590)
Q Consensus 326 ~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 405 (590)
-+++|+.+|||+||++++.++.+. |. +|++|+.-....+....+.|+.+|+.||++++.+++.....-....+.....
T Consensus 3 ~~Kavvl~SGG~DS~~~~~~l~~~-g~-~v~~v~~~~g~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~ 80 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FE-EVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDI 80 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CS-EEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC----
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC-CC-EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCC
T ss_conf 873999963858999999999983-99-1899998789887379999999999849965871246688864665456643
Q ss_pred -------HHHHHHHHHHHHHHH----HHHHHHCCEEEECC-CHHHHHH------------HHHHHC--CCCCCCHHHCCC
Q ss_conf -------066555657899999----99976197898748-6677755------------203330--677111223068
Q T0542 406 -------AEENLQSRLRGTTLM----AISNQEGHIVLAPG-NKSELAV------------GYSTLY--GDSVGAYGPIKD 459 (590)
Q Consensus 406 -------~~~N~qaR~R~~~l~----~~a~~~~~lvl~t~-n~sE~~l------------G~~t~~--Gd~~~~~~p~~~ 459 (590)
...|.-.+.|..+++ .+|...|.-.+-+| |..+.+. ...... +-..--.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~R~~i~~~~a~~~A~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pl~~ 160 (219)
T 3bl5_A 81 EIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMW 160 (219)
T ss_dssp ----------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTT
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 32102589886469765399999999999986989999776667504689873999999999998740698189943435
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 87889999999861
Q T0542 460 VYKTSIFRLAEWRN 473 (590)
Q Consensus 460 l~Kt~v~~la~~~~ 473 (590)
++|.+|.++++.++
T Consensus 161 ~~K~ei~~~~~e~g 174 (219)
T 3bl5_A 161 LNKAETWKLADELG 174 (219)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCC
T ss_conf 93999999998738
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.78 E-value=5.7e-07 Score=63.06 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC---CCCCEEEEECCC--CCCCHHHHHHHHHHHHHCC
Q ss_conf 57889999999999984156834897058836899999998516---955179887788--8982877999999999719
Q T0542 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDAL---GAQNVYGVSMPS--KYSSDHSKGDAAELARRTG 381 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~---g~~~v~~~~mp~--~~~s~~~~~~a~~la~~lg 381 (590)
..+.+.+...+.|+---.+-++++||+|||.||.+.+.++.+-. +..+|.+++... +..|....+.++.+|+.+|
T Consensus 5 ~~~~~~v~~~~~~~~l~~~~~kilvavSGG~DS~~Ll~~l~~~~~~~~~~~v~~~~v~h~~r~~s~~~~~~v~~~~~~~~ 84 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERN 84 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999999898467996969999808199999999999999877998299999728999655999999999999722
Q ss_pred CCEEEECHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCEEEECCC-HHHHHHHH--HHHCCCCCCC----
Q ss_conf 84798345999999998618357406655565-7899999999761978987486-67775520--3330677111----
Q T0542 382 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSR-LRGTTLMAISNQEGHIVLAPGN-KSELAVGY--STLYGDSVGA---- 453 (590)
Q Consensus 382 ~~~~~i~i~~~~~~~~~~~~~~~~~~~N~qaR-~R~~~l~~~a~~~~~lvl~t~n-~sE~~lG~--~t~~Gd~~~~---- 453 (590)
+++....++.-..+- .- ....| ..|| .|-..+..+|...|+-.+-||+ .++.+=-+ --..|++..+
T Consensus 85 i~~~~~~~~~~~~~~--~~---~~~~e-~~aR~~Ry~~l~~~a~~~~~~~i~~gHh~DD~~ET~l~~l~rG~~~~~l~g~ 158 (317)
T 1wy5_A 85 MKIFVGKEDVRAFAK--EN---RMSLE-EAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGF 158 (317)
T ss_dssp CCEEEEECCHHHHHH--HT---TCCHH-HHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCS
T ss_pred CCHHHHHHHHHHHCC--CC---CCCHH-HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 000121221111103--67---52078-8889999987422011344561454222377587778676227766788776
Q ss_pred -------HHHCCCCCHHHHHHHHHHHHH
Q ss_conf -------223068878899999998610
Q T0542 454 -------YGPIKDVYKTSIFRLAEWRNR 474 (590)
Q Consensus 454 -------~~p~~~l~Kt~v~~la~~~~~ 474 (590)
+=|+-+++|.++...++..+-
T Consensus 159 ~~~~~~i~RPLl~~~k~ei~~y~~~~~i 186 (317)
T 1wy5_A 159 LPKEEVIRRPLYYVKRSEIEEYAKFKGL 186 (317)
T ss_dssp CSEETTEECTTTTCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7631446777766549889889987199
No 29
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.42 E-value=7.6e-06 Score=55.67 Aligned_cols=152 Identities=15% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHHHHHHCCC----CCEEEECCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCC---CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999984156----8348970588368999999985169--5517988778889---82877999999999719847983
Q T0542 317 LRAYVAKNGF----RSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMPSKY---SSDHSKGDAAELARRTGLNFRTV 387 (590)
Q Consensus 317 l~d~~~~~g~----~~~viglSGGiDS~~~~~la~~a~g--~~~v~~~~mp~~~---~s~~~~~~a~~la~~lg~~~~~i 387 (590)
++.++++.+. ++++||+|||.||.+.+.++.+... .-++++++.-... +|....+-.+.+|+.+||++...
T Consensus 5 v~~~i~~~~li~~~~~i~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~lr~~~s~~~~~~v~~~~~~~~i~~~~~ 84 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETA 84 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999974899973989999827199999999999988973991999998798998666999999999999849908999
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC----HHHHHHHHHHHCCCC-------------
Q ss_conf 459999999986183574066555657899999999761978987486----677755203330677-------------
Q T0542 388 SIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGN----KSELAVGYSTLYGDS------------- 450 (590)
Q Consensus 388 ~i~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n----~sE~~lG~~t~~Gd~------------- 450 (590)
.++-.. +. ...+...|..--..|-..+..+|...++-++-||+ ..|..+--.. .|.+
T Consensus 85 ~~~~~~--~~---~~~~~~~e~~aR~~Ry~~~~~~~~~~~~~~i~~aHh~dD~~ET~l~~l~-rg~~~~gl~~~~~~~~~ 158 (464)
T 3a2k_A 85 QIDVPA--FQ---RSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLV-RGSTSKGYAGIPVKRPF 158 (464)
T ss_dssp ECCCHH--HH---TTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHH-HCCCSSSTTCSCSEEEC
T ss_pred EEEEEE--CC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCC
T ss_conf 996110--00---3689999999999998764222312555348851017668999998632-10001234445432335
Q ss_pred --CCCHHHCCCCCHHHHHHHHHHHHH
Q ss_conf --111223068878899999998610
Q T0542 451 --VGAYGPIKDVYKTSIFRLAEWRNR 474 (590)
Q Consensus 451 --~~~~~p~~~l~Kt~v~~la~~~~~ 474 (590)
.--+=|+-+++|.++...+...+-
T Consensus 159 ~~~~~~RPll~~~k~ei~~y~~~~~l 184 (464)
T 3a2k_A 159 HGGYLIRPFLAVSRAEIEAYCRQMGL 184 (464)
T ss_dssp SSSEEECGGGGSCHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 67651242877227899999998289
No 30
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.35 E-value=3.4e-05 Score=51.40 Aligned_cols=135 Identities=18% Similarity=0.166 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 5788999999999998415--68348970588368999999985169551798877888982877999999999719847
Q T0542 307 EEVYSALVVGLRAYVAKNG--FRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNF 384 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~~g--~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~ 384 (590)
+++...+-.-|.+-+++.- -..+-+-||||+||+++++++.+-. .++.+++.....+. ....|+.+|+.+|+++
T Consensus 217 e~~~~~l~~~l~~aV~~~l~sdvpvg~~LSGGlDSSlIaala~k~~--~~i~tfsig~~~~d--e~~~A~~vA~~lg~~h 292 (503)
T 1q15_A 217 EPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHF--KKLNTYSIGTELSN--EFEFSQQVADALGTHH 292 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTC--SEEEEEEEEETTBC--CHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEECCCCCCCCC--HHHHHHHHHHHHCCCC
T ss_conf 9999999999999999863688856887058752488999876203--43000125777775--4789999999840133
Q ss_pred EEECH--HHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCEEEECCC-HHHHHHHHHHH
Q ss_conf 98345--99999999861835740-66555657899999999761978987486-67775520333
Q T0542 385 RTVSI--EPMFDAYMASLGLTGLA-EENLQSRLRGTTLMAISNQEGHIVLAPGN-KSELAVGYSTL 446 (590)
Q Consensus 385 ~~i~i--~~~~~~~~~~~~~~~~~-~~N~qaR~R~~~l~~~a~~~~~lvl~t~n-~sE~~lG~~t~ 446 (590)
.++.+ +...+...+.+...+.. .....+-+-+..++..|.. +.-|+=||+ -+|+.-||...
T Consensus 293 ~~~~~~~~d~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~k~a~~-~~kVvLsG~GaDElF~GY~~~ 357 (503)
T 1q15_A 293 QMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKP 357 (503)
T ss_dssp EEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHBT-TBSEEECCTTHHHHHTTTSCT
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC-CCEEEEEECCHHHHCCCCCCH
T ss_conf 32138889998768888864288887533106889999997316-622886103504413785604
No 31
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.30 E-value=4.8e-05 Score=50.40 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCC------------CEEEEECCCCCCCHHHHH
Q ss_conf 70557889999999999984156834897058836899999998516955------------179887788898287799
Q T0542 304 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------------NVYGVSMPSKYSSDHSKG 371 (590)
Q Consensus 304 ~~~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~------------~v~~~~mp~~~~s~~~~~ 371 (590)
...+++.+.+.-.++.++. .-..+-+-|||||||+++++|+.+..... ++.++......+ ....
T Consensus 206 ~~~~~~~~lL~~aV~~rl~--sDvpvg~~LSGGlDSSlIaala~k~~~~~~~~~~~~~~~~~~~~tfsig~~~~--~d~~ 281 (553)
T 1ct9_A 206 TDKNELRQALEDSVKSHLM--SDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGS--PDLK 281 (553)
T ss_dssp CCHHHHHHHHHHHHHHHTC--CSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEESTTC--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC--CHHH
T ss_conf 7999999999999533531--78632267359975599999999864145543222212356675487148998--6689
Q ss_pred HHHHHHHHCCCCEEEECHHH--HHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-HHHHHHHHHH
Q ss_conf 99999997198479834599--999999861---83574066555657899999999761978987486-6777552033
Q T0542 372 DAAELARRTGLNFRTVSIEP--MFDAYMASL---GLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGN-KSELAVGYST 445 (590)
Q Consensus 372 ~a~~la~~lg~~~~~i~i~~--~~~~~~~~~---~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n-~sE~~lG~~t 445 (590)
.|+.+|+.+|..+.++.+++ ..+.....+ ...+... ..+-+-+..+...+...|.-|+=+|. -+|+.-||.-
T Consensus 282 ~a~~vA~~l~~~h~~v~~~~~~~~~~l~~~i~~~e~p~~~~--~~~~~~~~~l~~~~~~~~~KVvLsGeGaDElFgGY~~ 359 (553)
T 1ct9_A 282 AAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTT--IRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY 359 (553)
T ss_dssp HHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGG
T ss_pred HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHH
T ss_conf 99999998098466998488999999999999974787533--3012336788899996698899967660776189455
Q ss_pred HC
Q ss_conf 30
Q T0542 446 LY 447 (590)
Q Consensus 446 ~~ 447 (590)
.+
T Consensus 360 ~~ 361 (553)
T 1ct9_A 360 FH 361 (553)
T ss_dssp GG
T ss_pred HH
T ss_conf 30
No 32
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.28 E-value=1.5e-05 Score=53.70 Aligned_cols=132 Identities=23% Similarity=0.182 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 57889999999999984156834897058836899999998516955179887788898287799999999971984798
Q T0542 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRT 386 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~ 386 (590)
+++.+.+.-.++.++.. -..+.+-||||+||+++++++.+... ++.++......+. ....|+.+|+.+|++|.+
T Consensus 224 ~~l~~~L~~aV~~rl~s--d~~vg~~LSGGlDSSlIaala~k~~~--~~~t~s~~~~~~d--E~~~A~~vA~~lg~~h~~ 297 (513)
T 1jgt_A 224 AAVRAALEKAVAQRVTP--GDTPLVVLSGGIDSSGVAACAHRAAG--ELDTVSMGTDTSN--EFREARAVVDHLRTRHRE 297 (513)
T ss_dssp HHHHHHHHHHHHHHSCT--TCCCEEECCSSHHHHHHHHHHHHHHS--SCEEEEEECSSCC--CHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHHHHHHHCCC--CCCEEECCCCCCC--HHHHHHHHHHHHHCCEEE
T ss_conf 99999999999998456--88866974798533999998763034--4323522444576--477899998774125079
Q ss_pred ECHHH--HHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHHHHH
Q ss_conf 34599--9999998618357406-65556578999999997619789874866-777552033
Q T0542 387 VSIEP--MFDAYMASLGLTGLAE-ENLQSRLRGTTLMAISNQEGHIVLAPGNK-SELAVGYST 445 (590)
Q Consensus 387 i~i~~--~~~~~~~~~~~~~~~~-~N~qaR~R~~~l~~~a~~~~~lvl~t~n~-sE~~lG~~t 445 (590)
+.+++ ..+.+.+.+...+... ....+-+-+.+++..+.. +.-|+=||.- +|+.-||.-
T Consensus 298 i~i~~~d~~~~l~~~i~~~e~~~p~~~~~~~~~~~l~k~~~~-~~kVvLsG~GaDElFgGY~~ 359 (513)
T 1jgt_A 298 ITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALDG-PERRILTGYGADIPLGGMHR 359 (513)
T ss_dssp EECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCS-SCCEEECCTTTHHHHTTTCC
T ss_pred EECCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCC-CCEEEEEECCCHHHHCCCHH
T ss_conf 973999999999999998733111035533407777665305-52299986360453079701
No 33
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.25 E-value=3.7e-05 Score=51.10 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCC---CCCEEEEECCC--CCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCC
Q ss_conf 8348970588368999999985169---55179887788--898287799999999971984798345999999998618
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALG---AQNVYGVSMPS--KYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 401 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g---~~~v~~~~mp~--~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 401 (590)
++++|++|||.||.+.+.++.+-.. ..+++++.+-. +..|.....-.+.+|+.+||++....++. .
T Consensus 14 ~~i~va~SGG~DS~~ll~~l~~~~~~~~~~~~~~~hv~h~lr~~s~~~~~~v~~~~~~~~i~~~~~~~~~---------~ 84 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL---------A 84 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC---------C
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC---------C
T ss_conf 8399998281999999999999897589981999998298895559999999999997499789999963---------7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-H---HHHHHHHHHHCCCC----CC-----------CHHHCCCCCH
Q ss_conf 3574066555657899999999761978987486-6---77755203330677----11-----------1223068878
Q T0542 402 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGN-K---SELAVGYSTLYGDS----VG-----------AYGPIKDVYK 462 (590)
Q Consensus 402 ~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n-~---sE~~lG~~t~~Gd~----~~-----------~~~p~~~l~K 462 (590)
..+...|...-+.|-..+. +-..++-++-||+ . .|..+--... |-+ +| -+=|+-+++|
T Consensus 85 ~~~~~~e~~ar~~Ry~~~~--~~~~~~~~l~~aHh~dD~~ET~l~~l~r-g~~~~gl~g~~~~~~~~~~~iiRPLL~~~k 161 (433)
T 1ni5_A 85 QEGLGIEAQARQARYQAFA--RTLLPGEVLVTAQHLDDQCETFLLALKR-GSGPAGLSAMAEVSEFAGTRLIRPLLARTR 161 (433)
T ss_dssp CSSSTTTTHHHHHHHHHHH--HTCCTTEEEECCCCHHHHHHHHHHHHTT-TCCTTGGGCCCSEEEETTEEEECGGGSCCH
T ss_pred CCCCCHHHHHHHHHHHHHH--HHHCCCCEEEEECCHHHHHHHHHHHHHC-CCCCCCCCCCCCEECCCCCEEEEEHHHCCH
T ss_conf 8988889999999999877--5433777554300028889999998715-887433334422211478508856562919
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999861
Q T0542 463 TSIFRLAEWRN 473 (590)
Q Consensus 463 t~v~~la~~~~ 473 (590)
.++.+.++-.+
T Consensus 162 ~eI~~y~~~~~ 172 (433)
T 1ni5_A 162 GELVQWARQYD 172 (433)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99998875366
No 34
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.19 E-value=3.2e-05 Score=51.51 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 568348970588368999999985169551798877888982877999999999719847983459999
Q T0542 325 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMF 393 (590)
Q Consensus 325 g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~ 393 (590)
|.|++|+.+|||+||++++.++.+. | .+|++|++-.-.......+.+...+..++.....+......
T Consensus 1 ~mkk~Vvl~SGGlDS~~~a~~l~~~-g-~~v~~l~i~ygq~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 67 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQALQD-Y-DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLL 67 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH-C-SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHC-C-CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9985999857849999999999985-9-96999999899753899999998888633443123104454
No 35
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.63 E-value=0.0033 Score=38.26 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=59.5
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 999999841568348970588368999999985169--551798877888982877999999999719847983459999
Q T0542 316 GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMF 393 (590)
Q Consensus 316 ~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g--~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~ 393 (590)
-||.-+.. ++.++|+-|||-||+|++-|+.+++- ...|..+++-+-..-++|.+-.+.+++.+|+........+..
T Consensus 38 iir~~~~~--f~~~vvsfSGGKDStVlL~L~~~a~~~~~~~i~VvflDTg~efpET~e~ve~~~~~~~l~l~~~~~~~~~ 115 (325)
T 1zun_A 38 IIREVAAE--FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDGV 115 (325)
T ss_dssp HHHHHHHH--CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC----
T ss_pred HHHHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEECCHHHH
T ss_conf 99999996--6987999667689999999999987640898569996688850899999999999953565042170465
No 36
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=97.49 E-value=0.0009 Score=42.01 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=88.6
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHH-HHHHH-HCCCC
Q ss_conf 83489705883689999999851695517988778889828779999999997198-47983459999-99998-61835
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPMF-DAYMA-SLGLT 403 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~-~~~~i~i~~~~-~~~~~-~~~~~ 403 (590)
++|||.-|||+|||+++....+- |. .|++++.-. ++ ....+.+++-|..+|. .+.++|...-+ +-+.. .+. .
T Consensus 15 ~KVvLAySGGLDTSv~l~wL~e~-g~-eVia~~~D~-Gq-~ed~~~i~~kA~~~GA~~~~v~D~r~eFv~~~i~paI~-a 89 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEK-GF-DVIAYVANV-GQ-KDDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALL-G 89 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT-TC-EEEEEEEES-SC-CCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHT-T
T ss_pred CEEEEEECCCCHHHHHHHHHHHC-CC-EEEEEEEEC-CC-HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH-C
T ss_conf 70999928970899999999877-99-799999979-88-67789999999984996899977699999999999996-7
Q ss_pred CCHHHH----HHHHHHHH---HHHHHHHHHCCEEEEC-----CCHH-HHHHHHHHHCCCCCCCHHHCCCCC-------HH
Q ss_conf 740665----55657899---9999997619789874-----8667-775520333067711122306887-------88
Q T0542 404 GLAEEN----LQSRLRGT---TLMAISNQEGHIVLAP-----GNKS-ELAVGYSTLYGDSVGAYGPIKDVY-------KT 463 (590)
Q Consensus 404 ~~~~~N----~qaR~R~~---~l~~~a~~~~~lvl~t-----~n~s-E~~lG~~t~~Gd~~~~~~p~~~l~-------Kt 463 (590)
+..+|| .-|-.|-. .+..+|...|+-.+.- ||-- -.-+.+.++.- ...-++|.-+.- .+
T Consensus 90 na~Ye~~Y~L~tslaRplIa~~~v~~A~~~ga~~vaHG~TGkGNDQvRFe~~~~aL~P-~l~iiaP~Rd~~~~~~~~sR~ 168 (421)
T 1vl2_A 90 NAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNP-NLKVISPWKDPEFLAKFKGRT 168 (421)
T ss_dssp TCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCT-TSEEECGGGCHHHHHHTC--C
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCEEEEHHHHHHHHHHHCCHH
T ss_conf 8765786000210368999999999861343243365414467616778888987479-973741365676776431399
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999861
Q T0542 464 SIFRLAEWRN 473 (590)
Q Consensus 464 ~v~~la~~~~ 473 (590)
+..+.++-.+
T Consensus 169 ~~i~ya~~~g 178 (421)
T 1vl2_A 169 DLINYAMEKG 178 (421)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
T ss_conf 9998999759
No 37
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=97.42 E-value=0.0025 Score=39.04 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=85.8
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHH-HHHHHHHCC-
Q ss_conf 5683489705883689999999851695517988778889828779999999997198-4798345999-999998618-
Q T0542 325 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPM-FDAYMASLG- 401 (590)
Q Consensus 325 g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~-~~~~i~i~~~-~~~~~~~~~- 401 (590)
.-++|||.-|||+|||+++....+. |. .|++++--.-..++++.+..++-|..+|. .+.++|...- ++.++..+.
T Consensus 9 ~gkKVvLAySGGLDTSv~l~wL~e~-g~-eVia~~aD~Gq~~~ed~~~i~~kA~~~GA~~~~viD~r~eF~~~~v~ai~a 86 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK-GA-VPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQC 86 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT-TC-EEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHC-CC-EEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 9988999958981899999999874-98-699999979998505079999999970997899974499999988999984
Q ss_pred --CCC----CHHHHHHHHHHHH---HHHHHHHHHCCEEE-----ECCCHHHH-HHHHHHHCCCCCCCHHHCCCCC
Q ss_conf --357----4066555657899---99999976197898-----74866777-5520333067711122306887
Q T0542 402 --LTG----LAEENLQSRLRGT---TLMAISNQEGHIVL-----APGNKSEL-AVGYSTLYGDSVGAYGPIKDVY 461 (590)
Q Consensus 402 --~~~----~~~~N~qaR~R~~---~l~~~a~~~~~lvl-----~t~n~sE~-~lG~~t~~Gd~~~~~~p~~~l~ 461 (590)
... ..+.+.-+-.|-. .+...|.+.|.-++ |.||---. -+.+.++..+ ..-++|+-+..
T Consensus 87 ~a~y~~~~~~~Y~l~t~laRplia~~lv~~A~~~ga~~iAHG~TGkGNDQvRFe~~~~al~P~-l~iiaPwRd~~ 160 (455)
T 1k92_A 87 GAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAE-LQIYKPWLDTD 160 (455)
T ss_dssp TCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGCHH
T ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCC-CEEECCCCCHH
T ss_conf 414430135656586630788899999999998199499446566776236367788731998-63556844055
No 38
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=97.22 E-value=0.01 Score=34.99 Aligned_cols=141 Identities=14% Similarity=0.075 Sum_probs=83.9
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCH
Q ss_conf 83489705883689999999851695517988778889828779999999997198479834599999999861835740
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLA 406 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 406 (590)
.++++..|||.||+|++-|+.++-.+ +..++.-+-..-++|.+-.+.+++.+|++..++.-...........+ .+-
T Consensus 45 ~~~~vs~S~GkDS~Vllhl~~~~~~~--~~vvfvDTg~~fpET~~~v~~~~~~~gl~~~~~~~~~~~~~~~~~~~--~~~ 120 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIRPD--IPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYG--KLW 120 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHSTT--CEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHC--CGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCC--CCC
T ss_conf 98899945883799999999836899--22899975877788999999999863961799970203698885427--765
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHCCEEEECCCH-HH----HHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 6655565-------78999999997619789874866-77----75520333067711122306887889999999861
Q T0542 407 EENLQSR-------LRGTTLMAISNQEGHIVLAPGNK-SE----LAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
Q Consensus 407 ~~N~qaR-------~R~~~l~~~a~~~~~lvl~t~n~-sE----~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~ 473 (590)
......| --.++..++ ...+.-+.-+|-+ .| ..+.+... .+..--++||.+-...+|+...+..+
T Consensus 121 ~~~~~~~~~c~~~~K~~pl~~~l-~~~~~~~~i~G~R~~es~~R~~~~~~~~-~~~~~kv~Pi~~Wt~~DVw~Yi~~~~ 197 (215)
T 1sur_A 121 EQGVEGIEKYNDINKVEPMNRAL-KELNAQTWFAGLRREQSGSRANLPVLAI-QRGVFKVLPIIDWDNRTIYQYLQKHG 197 (215)
T ss_dssp GSHHHHHHHHHHHHTHHHHHHHH-HHTTEEEEECCCCTTSSSTTTTCCSEEE-ETTEEEECTTTTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHCCCCCEECCHHHHH-HCCCCEEEHHHHHHCCCHHHHCCCCEEE-CCCEEEEECHHHCCHHHHHHHHHHCC
T ss_conf 67851133314312015355554-1467222132466367630313876641-39999994508599999999999849
No 39
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.21 E-value=0.01 Score=34.97 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=87.5
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCH
Q ss_conf 83489705883689999999851695517988778889828779999999997198479834599999999861835740
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLA 406 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 406 (590)
++++|+.|||.||+|++-|+.++- + ++..++.-+-..-++|.+-.+.+++.+|++..++.-...........+ .+-
T Consensus 46 ~~~~vs~SgGKDS~VlLhL~~~~~-~-~~~vvfvDTg~efpET~efv~~~~~~~gl~l~v~~~~~~~~~~~~~~~--~~~ 121 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR-P-DIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYG--KLW 121 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS-T-TCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSCHHHHHHHTC--CGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHHC-C-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC--CCC
T ss_conf 988999468679999999999719-9-996799878999899999999999870983699982321688872327--766
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHCCEEEECCCHH-HH----HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 665556-------5789999999976197898748667-77----5520333067711122306887889999999861
Q T0542 407 EENLQS-------RLRGTTLMAISNQEGHIVLAPGNKS-EL----AVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
Q Consensus 407 ~~N~qa-------R~R~~~l~~~a~~~~~lvl~t~n~s-E~----~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~ 473 (590)
..+... |-..++..++.. .+.-+.-+|-+. |. .+.+.. ...+.--++||.+-...+|+..++..+
T Consensus 122 ~~~~~~~~~~~~~~K~~p~~~~l~~-~~~~~~i~G~R~~ES~~R~~~~~~~-~~~~~~kv~PI~dWt~~DVw~Yi~~~~ 198 (252)
T 2o8v_A 122 EQGVEGIEKYNDINKVEPMNRALKE-LNAQTWFAGLRREQSGSRANLPVLA-IQRGVFKVLPIIDWDNRTIYQYLQKHG 198 (252)
T ss_dssp GSHHHHHHHHHHHHTHHHHHHHHHH-TTCSEEEECCCSTTTTCCTTSCSEE-ESSSSEEECGGGSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCHHHHHHHH-CCCCEEECCCEECCHHHHCCCCCEE-CCCCEEEECCHHHCCHHHHHHHHHHCC
T ss_conf 6785057775335522339999854-3872762357036805340586342-059833037413289999999999809
No 40
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=97.02 E-value=0.0044 Score=37.44 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=85.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHHH-HHHH-HCCCCC
Q ss_conf 3489705883689999999851695517988778889828779999999997198-479834599999-9998-618357
Q T0542 328 SVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPMFD-AYMA-SLGLTG 404 (590)
Q Consensus 328 ~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~-~~~~i~i~~~~~-~~~~-~~~~~~ 404 (590)
++||.-|||+|+|+++....+-.|. .|++++.-. ++ ....+.+++-|..+|. .+.++|...-+- .+.. .+. .+
T Consensus 2 KVvLAySGGLDTSv~l~wL~e~~~~-eVi~~~~d~-Gq-~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~paI~-an 77 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYRA-EVIAFTADI-GQ-GEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMR-AG 77 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTC-EEEEEEEES-SC-SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHH-TT
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEEEC-CC-HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH-CC
T ss_conf 6999948981799999999741698-899999608-97-77779999999983997899976899999999999996-59
Q ss_pred CHHHH----HHHHHHHH---HHHHHHHHHCCEEEEC-----CCHHH-HHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf 40665----55657899---9999997619789874-----86677-755203330677111223068878899999998
Q T0542 405 LAEEN----LQSRLRGT---TLMAISNQEGHIVLAP-----GNKSE-LAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEW 471 (590)
Q Consensus 405 ~~~~N----~qaR~R~~---~l~~~a~~~~~lvl~t-----~n~sE-~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~ 471 (590)
..+|| .-|-.|-. -+..+|.+.|+-.+.- ||.-- .-+.+.++.-| ..-++|+-+..-+.-.++..|
T Consensus 78 a~Yeg~YpL~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGNDQvRFe~~~~aL~P~-l~iiaP~R~~~~~~r~~~i~y 156 (400)
T 1kor_A 78 AVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALKPD-IKVIAPWREWSFQGRKEMIAY 156 (400)
T ss_dssp CCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGTCCCCSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCC-CEEECCHHHHHHCCHHHHHHH
T ss_conf 6458877120232687999999999864497599447764788422288899985999-747420465430256999999
Q ss_pred HHH
Q ss_conf 610
Q T0542 472 RNR 474 (590)
Q Consensus 472 ~~~ 474 (590)
...
T Consensus 157 a~~ 159 (400)
T 1kor_A 157 AEA 159 (400)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 41
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=97.01 E-value=0.003 Score=38.50 Aligned_cols=66 Identities=24% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE-C-CCCCCC--HH--HHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 156834897058836899999998516955179887-7-888982--87--79999999997198479834599
Q T0542 324 NGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVS-M-PSKYSS--DH--SKGDAAELARRTGLNFRTVSIEP 391 (590)
Q Consensus 324 ~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~-m-p~~~~s--~~--~~~~a~~la~~lg~~~~~i~i~~ 391 (590)
.|...|++..|||-||++++..|.+. |- .|.++. + |....| -+ ..+..+..|+.||+++..+....
T Consensus 2 ~~~~~V~vl~SGGKDS~lAl~~a~~~-G~-~V~~L~t~~~~~~ds~~~h~~~~~l~~~qA~algiPl~~~~~~~ 73 (227)
T 2d13_A 2 VGLADVAVLYSGGKDSNYALYWALKS-GL-RVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKG 73 (227)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHT-TC-EEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CC-EEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 87241999916869999999999985-98-27999998728899560547789999999987599933662468
No 42
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=96.65 E-value=0.0037 Score=37.95 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=85.6
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHH-HHHHH-HCC
Q ss_conf 5683489705883689999999851695517988778889828779999999997198-47983459999-99998-618
Q T0542 325 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPMF-DAYMA-SLG 401 (590)
Q Consensus 325 g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~-~~~~i~i~~~~-~~~~~-~~~ 401 (590)
..++|||.-|||+||++++....+- |. .|++++--.- + ....+.+++-|..+|. .+.++|...-+ +.+.. .+.
T Consensus 4 ~k~kVvLAySGGLDTS~~l~wL~e~-g~-eVia~~~D~G-q-~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~I~ 79 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ-GY-DVIAYLANIG-Q-KEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQ 79 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT-TE-EEEEEEEESS-C-CCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHC-CC-EEEEEEEECC-C-HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 8886999908982799999999876-98-6999999799-8-78889999999983998899970699999999999997
Q ss_pred CCCCHHHH----HHHHHHHH---HHHHHHHHHCCEEEE-----CCCHHH-HHHHHHHHCCCCCCCHHHCCCC-------C
Q ss_conf 35740665----55657899---999999761978987-----486677-7552033306771112230688-------7
Q T0542 402 LTGLAEEN----LQSRLRGT---TLMAISNQEGHIVLA-----PGNKSE-LAVGYSTLYGDSVGAYGPIKDV-------Y 461 (590)
Q Consensus 402 ~~~~~~~N----~qaR~R~~---~l~~~a~~~~~lvl~-----t~n~sE-~~lG~~t~~Gd~~~~~~p~~~l-------~ 461 (590)
.+..+|| .-|-.|-. .+..+|...|+-.+. .||.-- .-+.+.++. -...-++|.-+. .
T Consensus 80 -ana~yeg~Y~L~tslaRplia~~~v~~A~~~ga~~vaHG~TGkGNDQvRFe~~~~aL~-P~~~viaPwRd~~~~~~~~s 157 (413)
T 2nz2_A 80 -SSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLA-PQIKVIAPWRMPEFYNRFKG 157 (413)
T ss_dssp -TTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC-TTCEEECGGGCHHHHTTCC-
T ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCCEEECCCCCHHHHHHCCC
T ss_conf -0844478761343404889999999999983997983587768635888998999869-99735032020466653078
Q ss_pred HHHHHHHHHHHH
Q ss_conf 889999999861
Q T0542 462 KTSIFRLAEWRN 473 (590)
Q Consensus 462 Kt~v~~la~~~~ 473 (590)
..+.-+.++-.+
T Consensus 158 R~~~i~ya~~~g 169 (413)
T 2nz2_A 158 RNDLMEYAKQHG 169 (413)
T ss_dssp CHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999849
No 43
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=95.96 E-value=0.029 Score=32.08 Aligned_cols=117 Identities=18% Similarity=0.100 Sum_probs=71.2
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-----CCCEEEECHHHHHHHHHHHCC
Q ss_conf 834897058836899999998516955179887788898287799999999971-----984798345999999998618
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRT-----GLNFRTVSIEPMFDAYMASLG 401 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~l-----g~~~~~i~i~~~~~~~~~~~~ 401 (590)
.++++=||||| |.|++.+..+. |. .|+.++. ++++.+.+.++.+++.| |.....++.
T Consensus 180 Gk~l~LlSGGi-SPVAa~~~mkR-G~-~v~~v~f---~~~~~~~~kv~~l~~~L~~y~~~~~~~~~~~------------ 241 (307)
T 1vbk_A 180 GRMIGILHDEL-SALAIFLMMKR-GV-EVIPVYI---GKDDKNLEKVRSLWNLLKRYSYGSKGFLVVA------------ 241 (307)
T ss_dssp CEEEEECSSHH-HHHHHHHHHHB-TC-EEEEEEE---SCSSHHHHHHHHHHHHHHTTCTTSCCCCEEE------------
T ss_pred CCEEEEECCCC-CHHHHHHHHHC-CC-EEEEEEE---CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC------------
T ss_conf 72688614774-29999999866-98-8999994---7968899999999999997589985799975------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-----HHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 3574066555657899999999761978987486-----67775520333067711122306887889999999861
Q T0542 402 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGN-----KSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
Q Consensus 402 ~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n-----~sE~~lG~~t~~Gd~~~~~~p~~~l~Kt~v~~la~~~~ 473 (590)
.+.| ....+|...|+.-+-||. -|...==..|..+-..--|-|+.+..|.++.++|+-++
T Consensus 242 ------~~~~------~~~~~a~~~~~~alvTGeslGQVaSQT~~~~~~~~~~~~pilRPLig~DK~eIi~~A~~IG 306 (307)
T 1vbk_A 242 ------ESFD------RVLKLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLG 306 (307)
T ss_dssp ------SSHH------HHHHHHHHHTCCEEECCCCGGGCCTTCHHHHHHHHHCSSCEECHHHHSCHHHHHHHHHHHT
T ss_pred ------CCHH------HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf ------8689------9999999849989993407259899999889998445887766837899899999999858
No 44
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.13 Score=27.82 Aligned_cols=147 Identities=9% Similarity=-0.030 Sum_probs=81.7
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHCCC----CEEEECHHHH-HHHHHHH
Q ss_conf 683489705883689999999851695-517988778889828779999999997198----4798345999-9999986
Q T0542 326 FRSVLIGLSGGIDSALVAAIACDALGA-QNVYGVSMPSKYSSDHSKGDAAELARRTGL----NFRTVSIEPM-FDAYMAS 399 (590)
Q Consensus 326 ~~~~viglSGGiDS~~~~~la~~a~g~-~~v~~~~mp~~~~s~~~~~~a~~la~~lg~----~~~~i~i~~~-~~~~~~~ 399 (590)
+++.++..|||.||+|++-|+.++... ..+-.+++-+-..-++|++-+..+++.+|. .......... .......
T Consensus 41 ~~~~~~s~SfGkds~VlLhL~~k~~~~~~~~pVvfiDTG~eFpETye~~d~l~~~~~~~~~~~~~v~~p~~~~~~~~~~~ 120 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSSHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 89908998576889999999998475578887799608998899999999999995864356531566762566999986
Q ss_pred CCCCCCHHHHHH--HHHH--HHHHHHHHHHHCCEEEECCCHHHH-----HHHHHHHC-CCCCCCHHHCCCCCHHHHHHHH
Q ss_conf 183574066555--6578--999999997619789874866777-----55203330-6771112230688788999999
Q T0542 400 LGLTGLAEENLQ--SRLR--GTTLMAISNQEGHIVLAPGNKSEL-----AVGYSTLY-GDSVGAYGPIKDVYKTSIFRLA 469 (590)
Q Consensus 400 ~~~~~~~~~N~q--aR~R--~~~l~~~a~~~~~lvl~t~n~sE~-----~lG~~t~~-Gd~~~~~~p~~~l~Kt~v~~la 469 (590)
.....+-..... -++| .++..++.+. +.-+.-+|-+.+- .+...... ..+.--++||.+-...+|+...
T Consensus 121 ~~~~~~~~~~~~~cc~~~Kv~Pl~~~l~~~-~~~~~i~GiR~~es~~R~~~~~~~~~~~~~~~~v~PI~dWt~~DVw~Yi 199 (261)
T 2oq2_A 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKEL-HISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVKQYI 199 (261)
T ss_dssp HHCTTHHHHCHHHHHHHHTHHHHHHHHHHT-TCSEEECCCCGGGCGGGGGCCSEEEETTTTEEEECTTTTCCHHHHHHHH
T ss_pred HCCCCCCCCCCHHHHHHHHHCHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCEEECCCCCCEEECCHHCCCHHHHHHHH
T ss_conf 048775546625664566005789998734-8875764433026140104872015576564145101019999999999
Q ss_pred HHHH
Q ss_conf 9861
Q T0542 470 EWRN 473 (590)
Q Consensus 470 ~~~~ 473 (590)
+..+
T Consensus 200 ~~~~ 203 (261)
T 2oq2_A 200 DANN 203 (261)
T ss_dssp HHHT
T ss_pred HHCC
T ss_conf 9839
No 45
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=90.52 E-value=0.7 Score=22.96 Aligned_cols=141 Identities=13% Similarity=0.209 Sum_probs=83.0
Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHH-HHHHHHHCCCCCC
Q ss_conf 834897058836899999998516955179887788898287799999999971984798345999-9999986183574
Q T0542 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPM-FDAYMASLGLTGL 405 (590)
Q Consensus 327 ~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~-~~~~~~~~~~~~~ 405 (590)
+.+++.-|||-|| |++-|+.+.-. ++..++.-+-+.-++|++-.+.+++.+|++..++...+. ++.....-+....
T Consensus 55 ~~i~vSfSGGKDs-Vll~L~~~~~~--~i~vvfiDTg~efpET~~~~~~~~~~~~l~i~v~~~~~~~~e~~~~~~~~~~~ 131 (275)
T 2goy_A 55 DELWISFSGAEDV-VLVDMAWKLNR--NVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSF 131 (275)
T ss_dssp TTEEEECCSSTTH-HHHHHHHHHCT--TCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCCHHHHHHHHHHHCSCHH
T ss_pred CCEEEECCCHHHH-HHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCC
T ss_conf 9889981585999-99999998589--98679836999989999999999998588847994785899999986587543
Q ss_pred HHHHHHH--HHH--HHHHHHHHHHHCCEEEECCCHHHHHHHHH------------HHCCCCCCCHHHCCCCCHHHHHHHH
Q ss_conf 0665556--578--99999999761978987486677755203------------3306771112230688788999999
Q T0542 406 AEENLQS--RLR--GTTLMAISNQEGHIVLAPGNKSELAVGYS------------TLYGDSVGAYGPIKDVYKTSIFRLA 469 (590)
Q Consensus 406 ~~~N~qa--R~R--~~~l~~~a~~~~~lvl~t~n~sE~~lG~~------------t~~Gd~~~~~~p~~~l~Kt~v~~la 469 (590)
-.++... .+| .++-.+++ +.-..=+|.+.+-..+.. +...+..--++||.|-...+|+...
T Consensus 132 ~~~~~~~cc~~~K~~Pl~r~l~---~~~~~i~G~Rr~es~~r~~~~~~~~~d~~~~~~~~~~~kv~PI~dWt~~DVw~Yi 208 (275)
T 2goy_A 132 YRDGHGECCGIRKIEPLKRKLA---GVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYI 208 (275)
T ss_dssp HHHCTHHHHHHHTHHHHHHHHH---TCSEEECCCCGGGTTSCSCCCCSEEECTTTCCSSSCCEEECTTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCHHHHHH---CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCHHHCCHHHHHHHH
T ss_conf 4446587764440163355542---0131441564357776535661378627667776652476324208999999999
Q ss_pred HHHH
Q ss_conf 9861
Q T0542 470 EWRN 473 (590)
Q Consensus 470 ~~~~ 473 (590)
+..+
T Consensus 209 ~~~~ 212 (275)
T 2goy_A 209 RMLE 212 (275)
T ss_dssp HHTT
T ss_pred HHCC
T ss_conf 9829
No 46
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=89.85 E-value=0.17 Score=27.07 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984-589999606741688999999999999999679969982640037888123331068899999999999998652
Q T0542 1 MSLQ-LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAE 79 (590)
Q Consensus 1 Ms~~-mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~ 79 (590)
|.++ .+|++. +|+.+|++...++++.|.++++|+|++- +|++....-...+.. +.+.+..
T Consensus 1 ~~~~~~~i~~~------sD~hg~~~ale~~~~~~~~~~~D~vi~~---------GDl~~~~~~~~~~~~----~~~~L~~ 61 (228)
T 1uf3_A 1 MRRTVRYILAT------SNPMGDLEALEKFVKLAPDTGADAIALI---------GNLMPKAAKSRDYAA----FFRILSE 61 (228)
T ss_dssp CCCCCCEEEEE------ECCTTCHHHHHHHHTHHHHHTCSEEEEE---------SCSSCTTCCHHHHHH----HHHHHGG
T ss_pred CCCCCCEEEEE------ECCCCCHHHHHHHHHHHHHHCCCEEEEC---------CCCCCCCCCCHHHHH----HHHHHHC
T ss_conf 98754589999------5687899999999998777099999989---------988988765258887----5300001
Q ss_pred HCCCCEEEEEEEEE
Q ss_conf 01088189983211
Q T0542 80 EGFGELPVLVGYLD 93 (590)
Q Consensus 80 ~~~~~i~ivvG~~~ 93 (590)
.. ..+.++.|..+
T Consensus 62 ~~-~pv~~i~GNHD 74 (228)
T 1uf3_A 62 AH-LPTAYVPGPQD 74 (228)
T ss_dssp GC-SCEEEECCTTS
T ss_pred CC-CEEEEEECCCC
T ss_conf 15-16999967888
No 47
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=89.06 E-value=0.9 Score=22.22 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCC--------------------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 6834897058836899999998516955--------------------17988778889828779999999997198479
Q T0542 326 FRSVLIGLSGGIDSALVAAIACDALGAQ--------------------NVYGVSMPSKYSSDHSKGDAAELARRTGLNFR 385 (590)
Q Consensus 326 ~~~~viglSGGiDS~~~~~la~~a~g~~--------------------~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~ 385 (590)
...+.|+.|||-||+|++-|+.+++.+. .+..++.-....-+.+.+-....++..+++..
T Consensus 58 ~~~i~~SFSGGKDStVlL~L~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~i~~~~~f~e~~~f~~~~~~~~~l~l~ 137 (308)
T 3fwk_A 58 NGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLY 137 (308)
T ss_dssp SSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 66278870687307899999999704356310366555630221145651168963777551599999999998399639
Q ss_pred EEC------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHH---HHHHHHH---CCCCCCC
Q ss_conf 834------599999999861835740665556578999999997619789874866777---5520333---0677111
Q T0542 386 TVS------IEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSEL---AVGYSTL---YGDSVGA 453 (590)
Q Consensus 386 ~i~------i~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~---~lG~~t~---~Gd~~~~ 453 (590)
... ....+..+.+... ...++++|+= ++|- ++-.+.. .....--
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~p-----------------------~~~aii~G~R-~~Es~~R~~~~~~~~~~~~p~~~r 193 (308)
T 3fwk_A 138 ESDRDKCETMAEAFETFLQVFP-----------------------ETKAIVIGIR-HTDPFGEHLKPIQKTDANWPDFYR 193 (308)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCT-----------------------TCCEEECCCC-TTSTTCTTCCSEEECCTTSCSCEE
T ss_pred EECCCCHHHHHHHHHHHHHHCC-----------------------CCCEEEECCC-CCCHHHHHCCCCCCCCCCCCCEEE
T ss_conf 9758621138999999999789-----------------------9747873250-356035542851145789887489
Q ss_pred HHHCCCCCHHHHHHHHHHHH
Q ss_conf 22306887889999999861
Q T0542 454 YGPIKDVYKTSIFRLAEWRN 473 (590)
Q Consensus 454 ~~p~~~l~Kt~v~~la~~~~ 473 (590)
++||.|-.-.+|+...+..+
T Consensus 194 v~PI~dWt~~DVW~Yi~~~~ 213 (308)
T 3fwk_A 194 LQPLLHWNLANIWSFLLYSN 213 (308)
T ss_dssp ECTTTTCCHHHHHHHHHHHT
T ss_pred EEEHHHCCHHHHHHHHHHCC
T ss_conf 94036489999999999849
No 48
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=82.04 E-value=1.4 Score=20.91 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99845899996067416889999999999999996799699826400378881--2333106889999999999999865
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV--EDLALRSSFVEASRTALRELAARLA 78 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~--~Dl~~~~~~~~~~~~~l~~la~~~~ 78 (590)
|+++|||.++--.++.+ .|..++.+.+.++.++|+++-++= +..+|. .|.. ..... +...++.+.+.
T Consensus 3 m~~~MKIl~I~GS~R~~---S~s~~l~~~~~~~~~~g~ev~~id---l~dlPl~~~d~~-~~~~~----~~~~~~~~~l~ 71 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSG---SYNSAALQEAIGLVPPGMSIELAD---ISGIPLYNEDVY-ALGFP----PAVERFREQIR 71 (193)
T ss_dssp ----CEEEEEESCCSTT---CHHHHHHHHHHTTCCTTCEEEECC---CTTCCCCCHHHH-TTCCC----HHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCC---CHHHHHHHHHHHHCCCCCEEEEEE---CCCCCCCCHHHH-CCCCC----HHHHHHHHHHH
T ss_conf 88896799998989988---889999999998647998899985---445876400120-24998----99999999851
Q ss_pred HHCCCCEEEEEEEEECCC
Q ss_conf 201088189983211035
Q T0542 79 EEGFGELPVLVGYLDRSE 96 (590)
Q Consensus 79 ~~~~~~i~ivvG~~~~~~ 96 (590)
.+ + .++++.|+...
T Consensus 72 ~A---D-~iI~~sP~Y~~ 85 (193)
T 1rtt_A 72 AA---D-ALLFATPEYNY 85 (193)
T ss_dssp HC---S-EEEEECCEETT
T ss_pred CC---C-EEEEECCCCCC
T ss_conf 28---8-67996641213
No 49
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=81.47 E-value=1 Score=21.92 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=28.7
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 45899996067416889999999999999996799699826
Q T0542 4 QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFP 44 (590)
Q Consensus 4 ~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfP 44 (590)
.||||++ .|+.+|+....+.++.+.++++|+|++-
T Consensus 25 ~MKI~ii------SDiHgn~~ale~vl~~~~~~~~D~vi~l 59 (190)
T 1s3l_A 25 HMKIGIM------SDTHDHLPNIRKAIEIFNDENVETVIHC 59 (190)
T ss_dssp -CEEEEE------CCCTTCHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCEEEEE------ECCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 7589999------8089996999999999975599999987
No 50
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=68.42 E-value=2.9 Score=18.91 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=25.7
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 45899996067416889999999999999996799699826
Q T0542 4 QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFP 44 (590)
Q Consensus 4 ~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfP 44 (590)
-|||+++ .|+.+|.....+.++...++++|.|++=
T Consensus 25 mMki~iI------SDiHgn~~al~~~l~~~~~~~~D~ii~l 59 (208)
T 1su1_A 25 MMKLMFA------SDIHGSLPATERVLELFAQSGAQWLVIL 59 (208)
T ss_dssp CCEEEEE------CCCTTBHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CEEEEEE------EECCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 3289999------8169998999999999875699889987
No 51
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=68.16 E-value=3.4 Score=18.45 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 1568348970588368--9999999851695517988778889828779999999997198479
Q T0542 324 NGFRSVLIGLSGGIDS--ALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFR 385 (590)
Q Consensus 324 ~g~~~~viglSGGiDS--~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~ 385 (590)
.|..++|||||||+-| +.+|-+..+.+|...+....+. . .--+.+++..|..+.
T Consensus 7 ~~~Pk~II~itG~~gSGKSTva~~L~~~~~~~~~~~~~is-----~---~i~~~~~~~~~~~~~ 62 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS-----G---PLKEQYAQEHGLNFQ 62 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTH-----H---HHHHHHHHTTTCCCC
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC-----H---HHHHHHHHHHCCCHH
T ss_conf 9998389998898999999999999998087761477512-----8---889989987198556
No 52
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis}
Probab=66.99 E-value=4.6 Score=17.58 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCCCEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 99845899996067416889999-99999999999679969982640037888
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNA-EAILRWTRHSAEQGAHLVAFPEMALTGYP 52 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~-~ki~~~i~~A~~~gadLVVfPEl~ltGY~ 52 (590)
|||+||+-+.=+.-++-+-.+.+ ++.++.++++.++|..+++ .||=+
T Consensus 1 ~~m~iKli~~DlDGTLl~~~~~i~~~~~~al~~l~~~gi~v~i-----~TGR~ 48 (279)
T 3mpo_A 1 MSLTIKLIAIDIDGTLLNEKNELAQATIDAVQAAKAQGIKVVL-----CTGRP 48 (279)
T ss_dssp ----CCEEEECC-----------CHHHHHHHHHHHHTTCEEEE-----ECSSC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE-----ECCCC
T ss_conf 9868709999887665289595099999999999988999999-----88998
No 53
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=66.39 E-value=4.9 Score=17.38 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHHHHHCCCC-----CCEEEEECCCC---CCCHHHHHHHHHH
Q ss_conf 55788999999999998415683-489705883689999999851695-----51798877888---9828779999999
Q T0542 306 DEEVYSALVVGLRAYVAKNGFRS-VLIGLSGGIDSALVAAIACDALGA-----QNVYGVSMPSK---YSSDHSKGDAAEL 376 (590)
Q Consensus 306 ~e~~~~a~~~~l~d~~~~~g~~~-~viglSGGiDS~~~~~la~~a~g~-----~~v~~~~mp~~---~~s~~~~~~a~~l 376 (590)
.+.+.+.+.....+|+.+.-..+ .+||+|+| +++ .+++ +.+.+ .++.-+.+-+. ..+..+.+.+..+
T Consensus 120 ~~~~~~~lg~aaA~~L~~~l~~gd~vIgvswG--~Tl-~~v~-~~l~~~~~~~~~v~~v~l~g~~~~~~~~~~~~i~~~l 195 (345)
T 2o0m_A 120 QKKVLSDFGDVLTNTLNLLLPNGENTIAVMGG--TTM-AMVA-ENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVM 195 (345)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCSEEEEEEECCS--HHH-HHHH-HTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--HHH-HHHH-HHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 37999999999999999865469869999352--999-9999-9734026887618999556667777776887999999
Q ss_pred HHHCCCCEEEECHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9971984798345999999998-618357406655565789999999976197898748667775520333067711122
Q T0542 377 ARRTGLNFRTVSIEPMFDAYMA-SLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYG 455 (590)
Q Consensus 377 a~~lg~~~~~i~i~~~~~~~~~-~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE~~lG~~t~~Gd~~~~~~ 455 (590)
|+.+|.++..++.-..++.-.. .+ .....++ -....+....-.++|=|+.+..+
T Consensus 196 A~~~gg~~~~l~aP~~~s~~~~~~l----~~e~~i~------~vl~~~~~~Dial~GIG~~~~~~--------------- 250 (345)
T 2o0m_A 196 ANKTGGNYRALYVPEQLSRETYNSL----LQEPSIQ------EVLTLISHANCVVHSIGRALHMA--------------- 250 (345)
T ss_dssp HHHHTCEECCCCCCSSCCHHHHHHH----HTCHHHH------HHHHHHHTCSEEEECCEEHHHHH---------------
T ss_pred HHHHCCCEEEECCCCCCCHHHHHHH----HHCHHHH------HHHHHHHCCCEEEEECCCCCCCC---------------
T ss_conf 9880992341248877998999999----8584799------99998742899999668776211---------------
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 306887889999999
Q T0542 456 PIKDVYKTSIFRLAE 470 (590)
Q Consensus 456 p~~~l~Kt~v~~la~ 470 (590)
..+-+.+.++..|.+
T Consensus 251 ~~~~~~~~e~~~l~~ 265 (345)
T 2o0m_A 251 ARRKMSDDEMVMLKQ 265 (345)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 058999899999997
No 54
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6
Probab=66.37 E-value=1.9 Score=20.14 Aligned_cols=36 Identities=6% Similarity=0.077 Sum_probs=28.1
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 845899996067416889999999999999996799699826
Q T0542 3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFP 44 (590)
Q Consensus 3 ~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfP 44 (590)
|++||+++ +|+.+|.+...++++.+.++++|+|++.
T Consensus 4 ~~~ri~~~------sDiH~~~~~l~~l~~~~~~~~~D~vl~~ 39 (260)
T 2yvt_A 4 MPRKVLAI------KNFKERFDLLPKLKGVIAEKQPDILVVV 39 (260)
T ss_dssp CCCEEEEE------ECCTTCGGGHHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEE------ECCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 65489999------6378998999999999887399999991
No 55
>2c40_A Inosine-uridine preferring nucleoside hydrolase family protein; spine; 2.2A {Bacillus anthracis}
Probab=56.73 E-value=7.2 Score=16.27 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEE-EEECCCCCC-------------CHH----HHHHHHHH
Q ss_conf 999999984156834897058836899999998516955179-887788898-------------287----79999999
Q T0542 315 VGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVY-GVSMPSKYS-------------SDH----SKGDAAEL 376 (590)
Q Consensus 315 ~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~-~~~mp~~~~-------------s~~----~~~~a~~l 376 (590)
..|.+-+++..-+ + .=++-|==+.++++|-.+---.+++- -+.|-+... ++- +-+.|+.+
T Consensus 107 ~~i~~~~~~~p~~-v-tivaiGPLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GNv~~~~~~~~AEfN~~~DPeAA~iV 184 (312)
T 2c40_A 107 HHLIETLLQTEEK-T-TLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGTAEWNSFWDPEAVARV 184 (312)
T ss_dssp HHHHHHHHHSSSC-E-EEEESSCSHHHHHHHHHCGGGGGGEEEEEEECCCCSSCCSCCCTTCCSCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHCCCC-C-EEEECCCCCHHHHHHHHCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 8899999838998-4-7992587557999998692123006519997066667887657877652123331495678886
Q ss_pred HHHCCCCEEEECHH
Q ss_conf 99719847983459
Q T0542 377 ARRTGLNFRTVSIE 390 (590)
Q Consensus 377 a~~lg~~~~~i~i~ 390 (590)
-+. |++...++.+
T Consensus 185 ~~s-~~~i~~vpld 197 (312)
T 2c40_A 185 WEA-NIEIDLITLE 197 (312)
T ss_dssp HHS-SCCEEEECGG
T ss_pred HCC-CCCEEEECCC
T ss_conf 246-9856995634
No 56
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=56.24 E-value=4 Score=17.95 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-----------HCCCCEEEEC
Q ss_conf 84589999606741688999999999999999-----------6799699826
Q T0542 3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSA-----------EQGAHLVAFP 44 (590)
Q Consensus 3 ~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~-----------~~gadLVVfP 44 (590)
..|||+++++ .| |+..++++++++. -..+|.+|+|
T Consensus 22 ~~mkIgvi~~---~G----n~~s~~~AL~~lG~~~~iv~~~~~l~~~D~lILP 67 (219)
T 1q7r_A 22 SNMKIGVLGL---QG----AVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLP 67 (219)
T ss_dssp CCCEEEEESC---GG----GCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEEC
T ss_pred CCCEEEEEEC---CC----CHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEEC
T ss_conf 5977999963---88----4999999999879969998998998269999989
No 57
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=55.59 E-value=7.5 Score=16.15 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCEEEECHHH
Q ss_conf 9999999997198479834599
Q T0542 370 KGDAAELARRTGLNFRTVSIEP 391 (590)
Q Consensus 370 ~~~a~~la~~lg~~~~~i~i~~ 391 (590)
-+.|+.+-+. |++...++.+-
T Consensus 172 PeAA~iVl~s-~~~i~~v~ldv 192 (314)
T 2mas_A 172 PEAAHIVFNE-SWQVTMVGLDL 192 (314)
T ss_dssp HHHHHHHHHS-SSCEEEECHHH
T ss_pred HHHHHHHHHC-CCCEEEECCCC
T ss_conf 8999999838-99869976010
No 58
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=54.57 E-value=3.2 Score=18.56 Aligned_cols=36 Identities=6% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-----------HCCCCEEEECC
Q ss_conf 84589999606741688999999999999999-----------67996998264
Q T0542 3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSA-----------EQGAHLVAFPE 45 (590)
Q Consensus 3 ~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~-----------~~gadLVVfPE 45 (590)
.+|||+++-+ .| |+..+.++++++. -..+|.||+|=
T Consensus 19 ~~mkigvl~~---~G----n~~s~~~aL~~lG~~~~ii~~~~~l~~~D~lIlPG 65 (208)
T 2iss_D 19 SHMKIGVLGV---QG----DVREHVEALHKLGVETLIVKLPEQLDMVDGLILPG 65 (208)
T ss_dssp -CCEEEEECS---SS----CHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECS
T ss_pred CCCEEEEEEC---CC----CHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECC
T ss_conf 9868999967---88----79999999998899899989989982599999899
No 59
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=52.40 E-value=6.8 Score=16.41 Aligned_cols=36 Identities=39% Similarity=0.486 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCEEEECCCCHHH--HHHHHHHHHCCCC
Q ss_conf 99999841568348970588368--9999999851695
Q T0542 317 LRAYVAKNGFRSVLIGLSGGIDS--ALVAAIACDALGA 352 (590)
Q Consensus 317 l~d~~~~~g~~~~viglSGGiDS--~~~~~la~~a~g~ 352 (590)
|..+-++.|-+-+||||+||+-| |++|...++.||.
T Consensus 11 ~~~~~~~~~~~P~IIgItG~~GSGKSTla~~L~~~L~~ 48 (252)
T 1uj2_A 11 LQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp ----------CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99720256999399998898977889999999999663
No 60
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=49.71 E-value=8.7 Score=15.72 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHH-HHHHHHHHHHCCCCEEEECC
Q ss_conf 9984589999606741688999999-99999999967996998264
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEA-ILRWTRHSAEQGAHLVAFPE 45 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~k-i~~~i~~A~~~gadLVVfPE 45 (590)
||..+.||+++.++.++-...-.+. +..+.++|.+.|-+++++|-
T Consensus 1 ~~~s~~i~~~~~~~~p~~~~~~~~~~~~~i~~~a~~~gy~~~i~~~ 46 (287)
T 3bbl_A 1 MSLSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF 46 (287)
T ss_dssp --CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9726999998189995521388999999999999987999999958
No 61
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.61 E-value=9.6 Score=15.44 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEC
Q ss_conf 998458999960674168899999999999999-96799699826
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHS-AEQGAHLVAFP 44 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A-~~~gadLVVfP 44 (590)
||.+|||+++=. .. .+|.+++.+.+.+. .+.|+++-++.
T Consensus 3 ~~~~mKvlVvy~-S~----~GnT~~lA~~ia~g~~~~G~ev~~~~ 42 (211)
T 1ydg_A 3 LTAPVKLAIVFY-SS----TGTGYAMAQEAAEAGRAAGAEVRLLK 42 (211)
T ss_dssp --CCCEEEEEEC-CS----SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEEEE-CC----CHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 899978999997-99----81899999999999875697799998
No 62
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=48.49 E-value=8.1 Score=15.94 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCCEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf 9984589999606741688999-99999999999967996998264003788812
Q T0542 1 MSLQLRLALNQIDSTVGDIAGN-AEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 54 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N-~~ki~~~i~~A~~~gadLVVfPEl~ltGY~~~ 54 (590)
|+|+||+-+.=+.-++-+-.+. -.+.++.++++.++|..+++ .||-+..
T Consensus 1 ~~m~iKli~~DlDGTLl~~~~~i~~~~~~al~~l~~~gi~vvi-----~TGR~~~ 50 (282)
T 1rkq_A 1 MSLAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVL-----TTGRPYA 50 (282)
T ss_dssp -CCCCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEE-----ECSSCGG
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE-----ECCCCHH
T ss_conf 9868769999677665389795199999999999988999999-----9899889
No 63
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
Probab=47.84 E-value=9.9 Score=15.36 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9845899996067416889999999999999996799699826
Q T0542 2 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFP 44 (590)
Q Consensus 2 s~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfP 44 (590)
-||||||++- -|..|- --..+.++.++-.++|-++-++-
T Consensus 13 ~mkmkI~i~~-~P~~GG---~~~~~~~La~~L~~~GheV~vi~ 51 (394)
T 2jjm_A 13 HMKLKIGITC-YPSVGG---SGVVGTELGKQLAERGHEIHFIT 51 (394)
T ss_dssp --CCEEEEEC-CC--CH---HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEEC-CCCCCC---HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8865898978-999997---99999999999997799899993
No 64
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.60 E-value=9 Score=15.62 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 557889999999999984156834897058836899999998516955179887788--898287799999999971984
Q T0542 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPS--KYSSDHSKGDAAELARRTGLN 383 (590)
Q Consensus 306 ~e~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~--~~~s~~~~~~a~~la~~lg~~ 383 (590)
.|+-.++.+-|+-.++.+.|....|-.++-.+-..++++-..+.+.++.+....... +...-.+.+.|-..++.+|+.
T Consensus 16 ~e~q~k~f~~WiN~~L~~~~~~~~i~dl~~Dl~DGv~L~~Lle~l~~~~i~~~~~~pk~~~~~~~Nv~~aL~~l~~~gi~ 95 (129)
T 2yrn_A 16 LEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGIN 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 99999999999999887779997622289884556999999999869866555689877999999999999999970974
Q ss_pred EEEECHHHHH
Q ss_conf 7983459999
Q T0542 384 FRTVSIEPMF 393 (590)
Q Consensus 384 ~~~i~i~~~~ 393 (590)
...+.-++++
T Consensus 96 ~~~i~~eDI~ 105 (129)
T 2yrn_A 96 IQGLSAEEIR 105 (129)
T ss_dssp CTTCCHHHHH
T ss_pred ECCCCHHHHH
T ss_conf 4787389822
No 65
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=46.77 E-value=10 Score=15.25 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCC-CCEEEECCCCHHH--HHHHHHHHHCC----CCCCEEEEECCCCCCCHHHH
Q ss_conf 99999999984156-8348970588368--99999998516----95517988778889828779
Q T0542 313 LVVGLRAYVAKNGF-RSVLIGLSGGIDS--ALVAAIACDAL----GAQNVYGVSMPSKYSSDHSK 370 (590)
Q Consensus 313 ~~~~l~d~~~~~g~-~~~viglSGGiDS--~~~~~la~~a~----g~~~v~~~~mp~~~~s~~~~ 370 (590)
+.....+++.+... .-++|||+|+.-| |++|.+....+ +..+|..+.|-+++-+....
T Consensus 64 ~~~~~~~fl~~~~~k~P~iIGIaG~sgSGKST~a~~L~~~L~~~~~~~~v~~is~D~F~~~~~~l 128 (308)
T 1sq5_A 64 RQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp HHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEECCCHHH
T ss_conf 99999998634478998899986799998778999999997313589953998211357883688
No 66
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7
Probab=43.92 E-value=11 Score=14.97 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=23.2
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9984589999606741688999999999999999679969982
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 43 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVf 43 (590)
|+ ++||+++ .|..+|+....+.++. ...++|+|+.
T Consensus 4 m~-~~~I~Vi------SDiHgn~~al~~vl~~-~~~~~D~iih 38 (176)
T 3ck2_A 4 MA-KQTIIVM------SDSHGDSLIVEEVRDR-YVGKVDAVFH 38 (176)
T ss_dssp CC-CEEEEEE------CCCTTCHHHHHHHHHH-HTTTSSEEEE
T ss_pred CC-CCEEEEE------ECCCCCHHHHHHHHHH-HHCCCCEEEE
T ss_conf 54-6899999------1058997899999999-8789989998
No 67
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.54 E-value=12 Score=14.83 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH---HHHHHHHHH---C-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 78899999999999841568348970588368---999999985---1-6955179887788898287799999999971
Q T0542 308 EVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS---ALVAAIACD---A-LGAQNVYGVSMPSKYSSDHSKGDAAELARRT 380 (590)
Q Consensus 308 ~~~~a~~~~l~d~~~~~g~~~~viglSGGiDS---~~~~~la~~---a-~g~~~v~~~~mp~~~~s~~~~~~a~~la~~l 380 (590)
.+...+-..+..+...++-+-++|||+||--| +++..|+.. . .+..+|..+.|-.+|=+.. +-..|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~P~iigiaG~qGSGKSTl~~~l~~~l~~~~~~~~~v~~iS~DdfY~~~~---~r~~L~~~~ 87 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE---DQLKLNEQF 87 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH---HHHHHHHHC
T ss_conf 79999999999975258999989983789878899999999999997507887079953345777989---999986223
No 68
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.17 E-value=13 Score=14.59 Aligned_cols=54 Identities=30% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCHHH---HHHHHHHHHCCCCC--CEEEEECCCCCC
Q ss_conf 99999999999841568348970588368---99999998516955--179887788898
Q T0542 311 SALVVGLRAYVAKNGFRSVLIGLSGGIDS---ALVAAIACDALGAQ--NVYGVSMPSKYS 365 (590)
Q Consensus 311 ~a~~~~l~d~~~~~g~~~~viglSGGiDS---~~~~~la~~a~g~~--~v~~~~mp~~~~ 365 (590)
.+++..+-+.+....-++.+|||+|++-| +++-.|+. .++.. ++..+.+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~r~iIgI~G~~gSGKSTlak~L~~-~l~~~~~~~~~i~~D~~~~ 63 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA-ALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH-HHHHTTCCEEEEESGGGBC
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCEEC
T ss_conf 9999999997511499938999889887899999999999-8512379859982464544
No 69
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=39.87 E-value=13 Score=14.56 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=6.1
Q ss_pred CCCCEEEEEEE
Q ss_conf 99845899996
Q T0542 1 MSLQLRLALNQ 11 (590)
Q Consensus 1 Ms~~mkIAlaQ 11 (590)
|+.+|||+++=
T Consensus 1 mk~p~KV~IiG 11 (327)
T 1y7t_A 1 MKAPVRVAVTG 11 (327)
T ss_dssp CCCCEEEEESS
T ss_pred CCCCCEEEEEC
T ss_conf 99998899988
No 70
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A*
Probab=39.21 E-value=13 Score=14.50 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHH-CCCCEEEECCCCCCCC
Q ss_conf 9999999999996-7996998264003788
Q T0542 23 AEAILRWTRHSAE-QGAHLVAFPEMALTGY 51 (590)
Q Consensus 23 ~~ki~~~i~~A~~-~gadLVVfPEl~ltGY 51 (590)
.+.+.++.+.... .+-++++||+.-.-.|
T Consensus 49 ~~~A~~l~~dL~~~~~~~v~~fP~~e~lpy 78 (483)
T 3hjh_A 49 MQNALRLHDEISQFTDQMVMNLADWETLPY 78 (483)
T ss_dssp HHHHHHHHHHHHHTCSSCEEECCCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCCCCC
T ss_conf 999999999998516853046676445767
No 71
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A*
Probab=38.41 E-value=14 Score=14.42 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEE-EECCCCCCC-------H----HHHHHHHHHHHHCCCC
Q ss_conf 999999841568348970588368999999985169551798-877888982-------8----7799999999971984
Q T0542 316 GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG-VSMPSKYSS-------D----HSKGDAAELARRTGLN 383 (590)
Q Consensus 316 ~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~-~~mp~~~~s-------~----~~~~~a~~la~~lg~~ 383 (590)
+|.+-+++..-+ +.=+.-|==+.++++|-.+---.+++.. +.|-+.+.. + .+-+.|+.+.+. +++
T Consensus 107 ~i~~~~~~~~~~--vtivaiGPLTNiA~al~~~P~~~~~i~~iviMGG~~~~gn~~~~aEfN~~~DPeAA~iVl~s-~~~ 183 (313)
T 1q8f_A 107 YIIDTLMASDGD--ITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTS-GVP 183 (313)
T ss_dssp HHHHHHHHSCSC--EEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSCCSSSSSCCHHHHTCHHHHHHHHTS-CSC
T ss_pred HHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCHHHHHHHHHEEECCCCCCCCCCCCCHHCCEEECCHHHHHHHCC-CCC
T ss_conf 999999828896--69996364005999987693988743535774567888887844110179774676888527-996
Q ss_pred EEEECHHHH
Q ss_conf 798345999
Q T0542 384 FRTVSIEPM 392 (590)
Q Consensus 384 ~~~i~i~~~ 392 (590)
...++.+-.
T Consensus 184 i~~v~ldvt 192 (313)
T 1q8f_A 184 LVMMGLDLT 192 (313)
T ss_dssp EEEECHHHH
T ss_pred EEECCCCCC
T ss_conf 476566533
No 72
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease, 2'-desoxyuridine endonuclease; HET: PG4; 1.23A {Methanothermobacterthermautotrophicus} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=37.77 E-value=14 Score=14.35 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 9984589999606741688999999999999999679969982640037
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALT 49 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~lt 49 (590)
|+ +|||+.--.+ |=-+...+.+.+.|+ +.++|+|++.|....
T Consensus 1 ~~-~lki~twNv~---g~~~~~~~~~~~~i~---~~~~DIi~lQEv~~~ 42 (265)
T 3g91_A 1 MA-VLKIISWNVN---GLRAVHRKGFLKWFM---EEKPDILCLQEIKAA 42 (265)
T ss_dssp -C-EEEEEEEECS---CHHHHHHHTHHHHHH---HHCCSEEEEECCCSC
T ss_pred CC-CCEEEEEECC---CHHHHHHHHHHHHHH---HCCCCEEEEECCCCC
T ss_conf 98-6199999939---714556758999998---579969999924076
No 73
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=36.88 E-value=14 Score=14.26 Aligned_cols=76 Identities=16% Similarity=0.034 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH--HCCCCCCEE-EEECCCCCC-----------------CHHHHHHH
Q ss_conf 9999999984156834897058836899999998--516955179-887788898-----------------28779999
Q T0542 314 VVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIAC--DALGAQNVY-GVSMPSKYS-----------------SDHSKGDA 373 (590)
Q Consensus 314 ~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~--~a~g~~~v~-~~~mp~~~~-----------------s~~~~~~a 373 (590)
+..|.+.+++..-+ |.=++-|==+.++++|-. ..+ .++|- -+.|-+... --.+.+.|
T Consensus 129 ~~~i~~~~~~~~~~--vtivaiGPLTNiA~al~~~~p~i-~~~i~~iviMGG~~~~~GNv~~~~~~~~aEfN~~~DPeAA 205 (338)
T 3epw_A 129 QQLLADLVMNSEEK--VTICVTGPLSNVAWCIDKYGEKF-TSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASA 205 (338)
T ss_dssp HHHHHHHHHHCSSC--EEEEECSCTHHHHHHHHHHTHHH-HTTEEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHH
T ss_pred HHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCHHH-HHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999999858997--79998367069999999605658-7642748996465678886556789974002004498999
Q ss_pred HHHHHHCCCCEEEECHHHH
Q ss_conf 9999971984798345999
Q T0542 374 AELARRTGLNFRTVSIEPM 392 (590)
Q Consensus 374 ~~la~~lg~~~~~i~i~~~ 392 (590)
+.+-+.-|++...++.+-.
T Consensus 206 ~~Vl~s~g~~i~~vpldvt 224 (338)
T 3epw_A 206 KTVFGCPGLRRIMFSLDST 224 (338)
T ss_dssp HHHHTCTTCCEEEECHHHH
T ss_pred HHHHHCCCCCEEEECCCCE
T ss_conf 9998088985899535530
No 74
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.39 E-value=15 Score=14.21 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=11.0
Q ss_pred CCCCEEEEEEECC
Q ss_conf 9984589999606
Q T0542 1 MSLQLRLALNQID 13 (590)
Q Consensus 1 Ms~~mkIAlaQ~~ 13 (590)
|+|+|||+++-+.
T Consensus 1 m~~~~ki~~Iapy 13 (196)
T 2q5c_A 1 MSLSLKIALISQN 13 (196)
T ss_dssp -CCCCEEEEEESC
T ss_pred CCCCEEEEEECCC
T ss_conf 9863069998681
No 75
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=32.46 E-value=17 Score=13.80 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=18.1
Q ss_pred CCEEEECCCCHHH--HHHHHHHHHCCCC
Q ss_conf 8348970588368--9999999851695
Q T0542 327 RSVLIGLSGGIDS--ALVAAIACDALGA 352 (590)
Q Consensus 327 ~~~viglSGGiDS--~~~~~la~~a~g~ 352 (590)
...+|||.||+-| |.++.+..+.+|-
T Consensus 11 ~~mIIgiTG~igsGKStv~~~l~~~~G~ 38 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7779998678868899999999885398
No 76
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=32.29 E-value=16 Score=13.91 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.8
Q ss_pred EEEEEEHHHH
Q ss_conf 9998624676
Q T0542 254 VVLDLDLPAA 263 (590)
Q Consensus 254 l~~diDl~~~ 263 (590)
++++.+.+..
T Consensus 134 Ifl~~~~e~~ 143 (207)
T 2qt1_A 134 YFLTIPYEEC 143 (207)
T ss_dssp EEEECCHHHH
T ss_pred EEEECCHHHH
T ss_conf 9999999999
No 77
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 kdops; 1.75A {Neisseria meningitidis serogroup B} PDB: 3fyo_A* 3fyp_A* 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=31.84 E-value=17 Score=13.74 Aligned_cols=33 Identities=3% Similarity=0.116 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 416889999999999999996799699826400
Q T0542 15 TVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMA 47 (590)
Q Consensus 15 ~~gD~~~N~~ki~~~i~~A~~~gadLVVfPEl~ 47 (590)
..++.+.+++.+.++++.|++.|+|.|-|+-..
T Consensus 24 ~nhn~d~~l~~Akkli~~A~~aGadaVKfQt~~ 56 (280)
T 2qkf_A 24 VLESLDSTLQTCAHYVEVTRKLGIPYIFKASFD 56 (280)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 367999999999999999998499979985203
No 78
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=31.27 E-value=18 Score=13.68 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=32.2
Q ss_pred EEEEEECCCCCCCHHHH---HHHHHHHHHHHHHC--CCCEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999606741688999---99999999999967--9969982-640037888123331068899999999999998652
Q T0542 6 RLALNQIDSTVGDIAGN---AEAILRWTRHSAEQ--GAHLVAF-PEMALTGYPVEDLALRSSFVEASRTALRELAARLAE 79 (590)
Q Consensus 6 kIAlaQ~~~~~gD~~~N---~~ki~~~i~~A~~~--gadLVVf-PEl~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~ 79 (590)
|||++ +|+.+| ++.+++.+++.... ++|.|+| .-+. +|.+ ...++.+.+.++...
T Consensus 3 ~Iavi------sDiHgn~~al~~~l~~i~~~~~~~~~~D~iv~lGDlv--d~gp--------~~~e~~~~l~~l~~~--- 63 (252)
T 1nnw_A 3 YVAVL------ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIV--GLFP--------YPKEVIEVIKDLTKK--- 63 (252)
T ss_dssp EEEEE------ECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSS--SSSS--------CHHHHHHHHHHHHHH---
T ss_pred EEEEE------ECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--CCCC--------CHHHHHHHHHHHHHC---
T ss_conf 89999------8320299999999999987531588877899937737--8988--------879999999976530---
Q ss_pred HCCCCEEEEEEEEEC
Q ss_conf 010881899832110
Q T0542 80 EGFGELPVLVGYLDR 94 (590)
Q Consensus 80 ~~~~~i~ivvG~~~~ 94 (590)
.++.++.|..+.
T Consensus 64 ---~~~~~i~GNHD~ 75 (252)
T 1nnw_A 64 ---ENVKIIRGKYDQ 75 (252)
T ss_dssp ---SCEEEECCHHHH
T ss_pred ---CCEEEECCCCHH
T ss_conf ---781898067108
No 79
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=30.49 E-value=18 Score=13.63 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 889999999999999996799699826
Q T0542 18 DIAGNAEAILRWTRHSAEQGAHLVAFP 44 (590)
Q Consensus 18 D~~~N~~ki~~~i~~A~~~gadLVVfP 44 (590)
+-.+|++.+.++|++|++.|||.|=|.
T Consensus 29 NH~Gd~~~a~~lI~~A~~~GadaVKFQ 55 (349)
T 2wqp_A 29 NHEGSLKTAFEMVDAAYNAGAEVVKHQ 55 (349)
T ss_dssp TTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 757769999999999998399999901
No 80
>1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A*
Probab=30.19 E-value=7.8 Score=16.03 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999999999984156
Q T0542 311 SALVVGLRAYVAKNGF 326 (590)
Q Consensus 311 ~a~~~~l~d~~~~~g~ 326 (590)
+.+...+.+++++.|.
T Consensus 226 ~~~~~~~~~~L~~~gl 241 (402)
T 1ysl_A 226 QSFAQVWDEHKKRTGL 241 (402)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999998399
No 81
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=29.91 E-value=19 Score=13.53 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999998415683489705883689999999851695517988778889828779999999997198479834
Q T0542 312 ALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVS 388 (590)
Q Consensus 312 a~~~~l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~ 388 (590)
..+..+-..+.+.+++++++=+|.=+|+.+..+.-..-+.+++|+|. ++.-.|.+-...+|+.||+.-..+.
T Consensus 100 ~I~~~i~~~i~~~~p~~ivlvvsNPvd~~t~~~~k~sg~~~~rviG~-----gt~LDs~R~~~~ia~~l~v~~~~V~ 171 (309)
T 1hyh_A 100 SMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGT-----GTLLDTARMQRAVGEAFDLDPRSVS 171 (309)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC-----TTHHHHHHHHHHHHHHHTCCGGGCB
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999987239972999915956899999999659983775344-----4258899999999998399965444
No 82
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=28.35 E-value=20 Score=13.35 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999841568348970588368999999985169551798
Q T0542 317 LRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 357 (590)
Q Consensus 317 l~d~~~~~g~~~~viglSGGiDS~~~~~la~~a~g~~~v~~ 357 (590)
|++.+++.+ .++-|-..|||.+.-+..|+.. .|...+|+
T Consensus 168 L~~l~~~~~-~~i~I~vgGGV~~~Ni~~l~~~-~g~~~~Hg 206 (224)
T 2bdq_A 168 IKALVEYAN-NRIEIMVGGGVTAENYQYICQE-TGVKQAHG 206 (224)
T ss_dssp HHHHHHHHT-TSSEEEECSSCCTTTHHHHHHH-HTCCEEEE
T ss_pred HHHHHHHCC-CCEEEEECCCCCHHHHHHHHHH-HCCEEEEE
T ss_conf 999999639-9859998699799999999996-59848997
No 83
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032}
Probab=27.61 E-value=20 Score=13.33 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=18.6
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9984589999606741688999999999999999679969982
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 43 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVVf 43 (590)
|+|+|||+++=. |.+.. .....+++ ..+++|+.+
T Consensus 1 m~~~irvgiIG~----G~~g~---~h~~~~~~--~~~~~lvav 34 (344)
T 3euw_A 1 MSLTLRIALFGA----GRIGH---VHAANIAA--NPDLELVVI 34 (344)
T ss_dssp --CCEEEEEECC----SHHHH---HHHHHHHH--CTTEEEEEE
T ss_pred CCCCEEEEEECC----CHHHH---HHHHHHHC--CCCCEEEEE
T ss_conf 998667989997----09999---99999970--899589999
No 84
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=27.52 E-value=21 Score=13.26 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-----------HCCCCEEEECC
Q ss_conf 84589999606741688999999999999999-----------67996998264
Q T0542 3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSA-----------EQGAHLVAFPE 45 (590)
Q Consensus 3 ~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~-----------~~gadLVVfPE 45 (590)
|+|||+++-.. .| |+..+.+.+++.. -..+|.+++|=
T Consensus 1 ~~mki~IID~g--~g----N~~Sv~~al~~lg~~~~ii~~~~~l~~~D~lIlPG 48 (200)
T 1ka9_H 1 MRMKALLIDYG--SG----NLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPG 48 (200)
T ss_dssp --CEEEEECSS--CS----CHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECC
T ss_pred CCCEEEEEECC--CC----HHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEECC
T ss_conf 99779999789--85----89999999998799699987989984089899969
No 85
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=27.30 E-value=21 Score=13.23 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH---CCCCCEEEECCCC
Q ss_conf 57889999999999984---1568348970588
Q T0542 307 EEVYSALVVGLRAYVAK---NGFRSVLIGLSGG 336 (590)
Q Consensus 307 e~~~~a~~~~l~d~~~~---~g~~~~viglSGG 336 (590)
+++.++.+..+.+.++. +.-+.++|+||||
T Consensus 10 ~e~~~~aA~~i~~~I~~~~~~~~~~~~ialsGG 42 (266)
T 1fs5_A 10 EQVGKWAARHIVNRINAFKPTADRPFVLGLPTG 42 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999999999999999987760499849998998
No 86
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1
Probab=26.68 E-value=9.7 Score=15.42 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH--------------HCCCCEEEEC
Q ss_conf 9984589999606741688999999999999999--------------6799699826
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSA--------------EQGAHLVAFP 44 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~--------------~~gadLVVfP 44 (590)
|| +|||+++.+ .|++..- .+.++++. -.++|.+++|
T Consensus 1 ~~-~~~Igvl~~---~Gn~~~h----~~~l~~lg~~~~~v~~v~~~~~l~~~D~lIlP 50 (227)
T 2abw_A 1 MS-EITIGVLSL---QGDFEPH----INHFIKLQIPSLNIIQVRNVHDLGLCDGLVIP 50 (227)
T ss_dssp -C-CEEEEEECT---TSCCHHH----HHHHHTTCCTTEEEEEECSHHHHHTCSEEEEC
T ss_pred CC-CCEEEEEEC---CCCHHHH----HHHHHHCCCCCEEEEEECCHHHHHCCCEEEEC
T ss_conf 99-878999966---8759999----99999749985289990999998438989978
No 87
>2qw5_A Xylose isomerase-like TIM barrel; YP_324688.1, putative sugar phosphate isomerase/epimerase, structural genomics; 1.78A {Anabaena variabilis atcc 29413}
Probab=25.39 E-value=22 Score=13.01 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 8899999999999841568348970
Q T0542 309 VYSALVVGLRAYVAKNGFRSVLIGL 333 (590)
Q Consensus 309 ~~~a~~~~l~d~~~~~g~~~~vigl 333 (590)
.|+..+-.|+.-.......|+.+++
T Consensus 158 ~~~~~~~~l~~l~~~A~~~Gv~l~i 182 (335)
T 2qw5_A 158 RYANAQPILDKLGEYAEIKKVKLAI 182 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 9999999999999998746736999
No 88
>3guv_A Site-specific recombinase, resolvase family protein; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae sp19-bs75}
Probab=25.15 E-value=23 Score=12.98 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCCEEEEEEECCCCCCCHHH--HHHHHHHHHHH-HHHCCCCEE-EECCCCCCCCCHH
Q ss_conf 998458999960674168899--99999999999-996799699-8264003788812
Q T0542 1 MSLQLRLALNQIDSTVGDIAG--NAEAILRWTRH-SAEQGAHLV-AFPEMALTGYPVE 54 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~--N~~ki~~~i~~-A~~~gadLV-VfPEl~ltGY~~~ 54 (590)
|++||||++=-= ....+-.. .+++-.+.+++ |...|-.++ +|-+...+|+...
T Consensus 1 m~~~~r~~~Y~R-vSt~~Q~~~~Sle~Q~~~~~~~~~~~~~~i~~~~~D~~~Sg~~~~ 57 (167)
T 3guv_A 1 MSLKIKVYLYTR-VSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIE 57 (167)
T ss_dssp ---CCEEEEEEE-CSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEEEEEECCCSSSSSC
T ss_pred CCCCCEEEEEEE-ECCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC
T ss_conf 986208999999-896301458899999999999998779961589982306545403
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=24.95 E-value=23 Score=12.96 Aligned_cols=28 Identities=39% Similarity=0.621 Sum_probs=18.5
Q ss_pred CCCCEEEECCCCHHH--HHHHHHHHHCCCC
Q ss_conf 568348970588368--9999999851695
Q T0542 325 GFRSVLIGLSGGIDS--ALVAAIACDALGA 352 (590)
Q Consensus 325 g~~~~viglSGGiDS--~~~~~la~~a~g~ 352 (590)
..+.++|||+|++-| |++|-+.++.||.
T Consensus 22 ~~kp~iIgI~G~~GSGKSTvA~~L~~~l~~ 51 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999579998998865399999999998587
No 90
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=24.91 E-value=23 Score=12.95 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=14.2
Q ss_pred HHHHHHHHHHH--CCCCEEEECHHHHH
Q ss_conf 79999999997--19847983459999
Q T0542 369 SKGDAAELARR--TGLNFRTVSIEPMF 393 (590)
Q Consensus 369 ~~~~a~~la~~--lg~~~~~i~i~~~~ 393 (590)
+-+.|+.+-+. .|++...++.+-..
T Consensus 186 DPeAA~iVl~s~~~~~pi~~vpldvt~ 212 (360)
T 3fz0_A 186 DPEAGVVVLQHKGWKCPVQLVNWEVTV 212 (360)
T ss_dssp CHHHHHHHHHCSCCSSCEEEECHHHHH
T ss_pred CHHHHHHHHHCCCCCCCEEEECCCCEE
T ss_conf 999999998474558976883401020
No 91
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=23.92 E-value=24 Score=12.83 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=19.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 998458999960674168899999999999999967996--9982
Q T0542 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH--LVAF 43 (590)
Q Consensus 1 Ms~~mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gad--LVVf 43 (590)
|++||||+++- |...+ .-++-..+++-.+.|.+ ++++
T Consensus 5 ~~~kmKIl~v~-----gt~pe-~i~~a~l~~~L~~~~~~v~~~v~ 43 (375)
T 3beo_A 5 MTERLKVMTIF-----GTRPE-AIKMAPLVLELQKHPEKIESIVT 43 (375)
T ss_dssp CSSCEEEEEEE-----CSHHH-HHHHHHHHHHHTTCTTTEEEEEE
T ss_pred CCCCCEEEEEE-----CCCHH-HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 77788899996-----34686-99999999999828999659999
No 92
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=23.73 E-value=24 Score=12.81 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=17.6
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 58999960674168899999999999999967996998
Q T0542 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVA 42 (590)
Q Consensus 5 mkIAlaQ~~~~~gD~~~N~~ki~~~i~~A~~~gadLVV 42 (590)
||+++++..-+-..+ .+.+.++.|++.|.+=|=
T Consensus 1 mkl~~~t~~f~~~~~-----~l~e~~~~a~~~G~~gIE 33 (286)
T 3dx5_A 1 MKYSLCTISFRHQLI-----SFTDIVQFAYENGFEGIE 33 (286)
T ss_dssp CEEEEEGGGGTTSCC-----CHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEHHHHCCCCC-----CHHHHHHHHHHCCCCEEE
T ss_conf 916885387537899-----999999999980999999
No 93
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=22.74 E-value=11 Score=15.18 Aligned_cols=52 Identities=23% Similarity=0.453 Sum_probs=24.5
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 48970588368999999985169551798877888982877999999999719847983459999
Q T0542 329 VLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMF 393 (590)
Q Consensus 329 ~viglSGGiDS~~~~~la~~a~g~~~v~~~~mp~~~~s~~~~~~a~~la~~lg~~~~~i~i~~~~ 393 (590)
+||| .|-+-..++..|... |..++. +. ..|.+.|+.+|+.+|+ ..++.+...
T Consensus 171 lviG-aGem~~~~~k~L~~~--g~~~i~-v~-------nRt~~ra~~la~~~~~--~~~~~~~l~ 222 (404)
T 1gpj_A 171 LVVG-AGEMGKTVAKSLVDR--GVRAVL-VA-------NRTYERAVELARDLGG--EAVRFDELV 222 (404)
T ss_dssp EEES-CCHHHHHHHHHHHHH--CCSEEE-EE-------CSSHHHHHHHHHHHTC--EECCGGGHH
T ss_pred EEEE-CCHHHHHHHHHHHHC--CCCEEE-EE-------CCCHHHHHHHHHHCCC--EEEEHHHHH
T ss_conf 9991-757889999999827--975278-97-------6867678998875291--899724655
No 94
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}
Probab=21.93 E-value=26 Score=12.58 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=11.2
Q ss_pred HHHHHHHCCCCEEEECHHHHHHHHHH
Q ss_conf 99999971984798345999999998
Q T0542 373 AAELARRTGLNFRTVSIEPMFDAYMA 398 (590)
Q Consensus 373 a~~la~~lg~~~~~i~i~~~~~~~~~ 398 (590)
|..++..||.+...++|.....++..
T Consensus 157 a~~v~~~LG~~~~a~di~~gC~g~~~ 182 (392)
T 3led_A 157 AIEVQNALGLGGFAFDMNVACSSATF 182 (392)
T ss_dssp HHHHHHHTTCCSEEEEEECGGGHHHH
T ss_pred HHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 99999861444402220461768999
No 95
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=21.26 E-value=27 Score=12.49 Aligned_cols=24 Identities=25% Similarity=0.045 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 899899999999985156686378
Q T0542 536 YDRELVVKTLRMVDTAEYKRRQYP 559 (590)
Q Consensus 536 ~~~~~v~~~~~~~~~~~~KR~~~p 559 (590)
-|.+.|+||++|--..-+.|.|.|
T Consensus 76 tD~akVEKWF~RNC~~v~gReCTa 99 (112)
T 1dw0_A 76 TDSARVEKWLGRNCNSVIGRDCTP 99 (112)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCHHHHHHHHHHHCHHHHCCCCCH
T ss_conf 788999999971037666345778
No 96
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=20.96 E-value=27 Score=12.45 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=6.4
Q ss_pred CCEEEECCCCHHHHHH
Q ss_conf 8348970588368999
Q T0542 327 RSVLIGLSGGIDSALV 342 (590)
Q Consensus 327 ~~~viglSGGiDS~~~ 342 (590)
+.+++=++|---..++
T Consensus 185 ~~i~ll~~G~~Ka~~l 200 (238)
T 1y89_A 185 KRISYLVLGAGKAEIV 200 (238)
T ss_dssp SEEEEEECSGGGHHHH
T ss_pred CEEEEEECCHHHHHHH
T ss_conf 9689997586899999
No 97
>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.94 E-value=27 Score=12.45 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8899999999999999967996998264
Q T0542 18 DIAGNAEAILRWTRHSAEQGAHLVAFPE 45 (590)
Q Consensus 18 D~~~N~~ki~~~i~~A~~~gadLVVfPE 45 (590)
+-.++++++.++|+.|++.|||.|=|.=
T Consensus 38 NH~Gdl~~ak~lI~~A~~sGAdaVKFQ~ 65 (385)
T 1vli_A 38 NHDGKLDQAFALIDAAAEAGADAVKFQM 65 (385)
T ss_dssp TTTTCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6588299999999999980989999115
No 98
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=20.69 E-value=28 Score=12.41 Aligned_cols=22 Identities=32% Similarity=0.191 Sum_probs=11.9
Q ss_pred EEECCCCHHH--HHHHHHHHHCCC
Q ss_conf 8970588368--999999985169
Q T0542 330 LIGLSGGIDS--ALVAAIACDALG 351 (590)
Q Consensus 330 viglSGGiDS--~~~~~la~~a~g 351 (590)
+|||+||+-| +++|.+..+.+|
T Consensus 3 iIgltG~igSGKsTva~~l~~~~g 26 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999979998669999999998319
No 99
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=20.47 E-value=28 Score=12.38 Aligned_cols=121 Identities=11% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHHCCCC-----CCEEEEE---CCCCCCCHHHHHHHHHH
Q ss_conf 55788999999999998415683489705-883689999999851695-----5179887---78889828779999999
Q T0542 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLS-GGIDSALVAAIACDALGA-----QNVYGVS---MPSKYSSDHSKGDAAEL 376 (590)
Q Consensus 306 ~e~~~~a~~~~l~d~~~~~g~~~~viglS-GGiDS~~~~~la~~a~g~-----~~v~~~~---mp~~~~s~~~~~~a~~l 376 (590)
.+.+.+.+...-.+|+.+.=.++-+||++ +| +++.+ ++. .+.+ .++.-+. ..+...+....+-+..+
T Consensus 36 ~~~~~~~vg~~aA~~L~~~l~~~~~igv~~WG--~Tl~~-~~~-~l~~~~~~~~~~~vv~l~G~~~~~~~~~~~~i~~~l 111 (264)
T 2r5f_A 36 EESIKQAIGSAAAHYLETSLSAQDHIGISSWS--STIRA-MVS-HMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRL 111 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECTTC--HHHHH-HHH-TCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC--HHHHH-HHH-HCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 68999999999999999865569859994673--59999-998-647666767875999556767877775899999999
Q ss_pred HHHCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHH
Q ss_conf 99719847983459999999986183574066555657899999999761978987486677
Q T0542 377 ARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSE 438 (590)
Q Consensus 377 a~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~lvl~t~n~sE 438 (590)
|+.+|.++..++.-..++.- ...+.-.+ +.-+ .-.+.++.+..-.++|-|+.++
T Consensus 112 A~~~~~~~~~l~aP~~~~s~----~~~~~l~~--~~~i--~~vl~~~~~~dial~gIG~~~~ 165 (264)
T 2r5f_A 112 ATLLNCPAFLLPSQSIEQSV----ESKQRIVE--MEEV--KEVLHRFDSITLAIVGIGELEP 165 (264)
T ss_dssp HHHHTSCEECCCCC--------------CCHH--HHHH--HHHHHHTTTCCEEEECCEECC-
T ss_pred HHHCCCEEEEECCCCCCCCH----HHHHHHHH--CHHH--HHHHHHHHHCCEEEEECCCCCC
T ss_conf 99729818951561003799----99999986--9489--9999999859999995278876
Done!