Query T0544 SnR168A, , 135 residues
Match_columns 135
No_of_seqs 113 out of 289
Neff 4.5
Searched_HMMs 22458
Date Fri May 21 18:04:03 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0544.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0544.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1snl_A Nucleobindin 1, calnuc; 55.1 7.2 0.00032 19.3 2.9 54 9-62 37-102 (103)
2 1j2z_A Acyl-[acyl-carrier-prot 50.1 5.9 0.00026 19.9 1.8 55 5-62 198-252 (270)
3 2d8n_A Recoverin; structural g 49.8 10 0.00047 18.3 3.1 53 45-105 84-138 (207)
4 1n00_A Annexin GH1; membrane-b 33.4 26 0.0011 15.9 6.1 106 8-130 117-222 (321)
5 2ehb_A Calcineurin B-like prot 28.4 30 0.0013 15.5 2.6 15 45-59 87-101 (207)
6 3i6v_A Periplasmic His/Glu/Gln 28.4 13 0.00059 17.7 0.8 28 108-135 195-226 (232)
7 2bec_A Calcineurin B homologou 26.7 16 0.00071 17.2 0.9 16 45-60 74-89 (202)
8 2ppw_A Conserved domain protei 25.7 25 0.0011 15.9 1.8 36 52-88 181-216 (216)
9 2ggm_A Centrin-2; EF-hand supe 24.9 19 0.00083 16.7 1.0 18 43-60 78-95 (172)
10 2k7c_A CABP1, calbrain, calciu 24.5 37 0.0016 14.9 2.9 15 45-59 57-71 (72)
11 1m9i_A Annexin VI; calcium-bin 24.3 37 0.0016 14.9 4.6 18 10-28 122-139 (672)
12 2dn9_A DNAJ homolog subfamily 23.8 38 0.0017 14.8 3.4 28 4-35 14-41 (79)
13 3hsq_A Acyl-[acyl-carrier-prot 23.2 38 0.0017 14.8 2.3 52 8-62 201-252 (259)
14 2zan_A Vacuolar protein sortin 22.4 40 0.0018 14.7 4.7 15 7-21 334-348 (444)
15 1ucv_A Ephrin type-A receptor 22.1 36 0.0016 15.0 2.0 29 45-74 4-32 (81)
16 1pva_A Parvalbumin; calcium bi 22.0 35 0.0016 15.0 2.0 18 45-62 21-38 (110)
17 1or7_C Sigma-E factor negative 21.4 33 0.0015 15.2 1.7 41 40-84 5-45 (90)
No 1
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=55.14 E-value=7.2 Score=19.33 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCC------CHHHHHHHHH------CCCCCHHHHHHHHHCCH
Q ss_conf 898889999999989871255432223------3035788874------68977899999984257
Q T0544 9 ASSDEINAIIRAVYRQVLGNDYVMSTE------RLTSAESLLR------GGEISVRDFVRAVALSE 62 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~~~~~~~~e------r~~~~ES~lr------~g~IsVreFVr~la~S~ 62 (135)
.|.+|+.+++++...++.......... -...++..++ +|.||..||++++.+-+
T Consensus 37 i~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~DG~Is~eEF~~~~~~~e 102 (103)
T 1snl_A 37 LDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102 (103)
T ss_dssp EEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 779999999999887523011131102354767999999999981899998194999999873369
No 2
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=50.06 E-value=5.9 Score=19.89 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 2799898889999999989871255432223303578887468977899999984257
Q T0544 5 WRAGASSDEINAIIRAVYRQVLGNDYVMSTERLTSAESLLRGGEISVRDFVRAVALSE 62 (135)
Q Consensus 5 l~p~~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~~ES~lr~g~IsVreFVr~la~S~ 62 (135)
||...+.+++. .++.+||.+|-... --.+.+..++.++.+.. -|++|+.-+.+|+
T Consensus 198 lr~~~~~~~i~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~f~~~s~ 252 (270)
T 1j2z_A 198 MRQLLESKDID-FIYALYKRLFRPIP-SLRESAKLELEEHANNP-FVKEICSFILESS 252 (270)
T ss_dssp HHHHSCHHHHH-HHHHHHHHHTCSSS-CHHHHHHHHHHHTSSCH-HHHHHHHHHHHCS
T ss_pred HHCCCCHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCH-HHHHHHHHHHHCC
T ss_conf 76478888999-99999999985687-69999999987737998-9999999997189
No 3
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=49.81 E-value=10 Score=18.31 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=26.0
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 46897789999998425788872266787068999888775--07899898899999999870
Q T0544 45 RGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKHL--LGRAPYDQAEVAAHAATYHS 105 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~ 105 (135)
.+|.|+.+||+.++... .....-.-++.+|+.+ =|..-.+..|+.........
T Consensus 84 ~~g~I~f~EFl~~~~~~--------~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~ 138 (207)
T 2d8n_A 84 LDGTLDFKEYVIALHMT--------TAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFK 138 (207)
T ss_dssp CCSEEEHHHHHHHHHHH--------SCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHH
T ss_conf 99816412565554330--------25653768999999761089981719999999999865
No 4
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=33.37 E-value=26 Score=15.88 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98988899999999898712554322233035788874689778999999842578887226678706899988877507
Q T0544 8 GASSDEINAIIRAVYRQVLGNDYVMSTERLTSAESLLRGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKHLLG 87 (135)
Q Consensus 8 ~~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khlLG 87 (135)
..|.+++..+ +++|++.|++.. +. .+.+.+ .|. .+.++-+|.+...+-....+..-.-.-++..++..=|
T Consensus 117 ~rs~~e~~~i-k~aY~~~y~~~L--~~----di~~e~-sg~--~~~lll~ll~~~R~e~~~vd~~~a~~da~~L~~a~~~ 186 (321)
T 1n00_A 117 TRSANQLLHA-RQAYHARYKKSL--EE----DVAHHT-TGD--FHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISN 186 (321)
T ss_dssp SSCHHHHHHH-HHHHHHHHSSCH--HH----HHHHHC-CHH--HHHHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HHHHHHHHHHHH--HH----HHHHCC-CHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 3986999999-999999980769--99----998536-688--9999999984587679976989988899999998616
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 8998988999999998706823466752486788850787578
Q T0544 88 RAPYDQAEVAAHAATYHSHGYDADINSYIDSAEYTESFGDNVV 130 (135)
Q Consensus 88 R~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~d~V 130 (135)
+.+.+. .++.|+++.-...+- ++. .+|...+|.+..
T Consensus 187 ~~~~~~----~~i~Il~~rs~~hL~-~i~--~~Y~~~~g~~L~ 222 (321)
T 1n00_A 187 KAYSDD----DVIRVLATRSKAQIN-ATL--NHYKNEYGNDIN 222 (321)
T ss_dssp TCTTCH----HHHHHHHHSCHHHHH-HHH--HHHHHHHSSCTT
T ss_pred CCCCHH----HHHHHHHHCCHHHHH-HHH--HHHHHHCCCCHH
T ss_conf 788789----999999858999999-999--999986184499
No 5
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=28.44 E-value=30 Score=15.45 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=12.6
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 468977899999984
Q T0544 45 RGGEISVRDFVRAVA 59 (135)
Q Consensus 45 r~g~IsVreFVr~la 59 (135)
.+|.|+..||+.++.
T Consensus 87 ~dG~I~f~EF~~~l~ 101 (207)
T 2ehb_A 87 RNGVIEFGEFVRSLG 101 (207)
T ss_dssp CSSEECHHHHHHHHG
T ss_pred CCCCEEHHHHHHHHH
T ss_conf 998382999998888
No 6
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=28.40 E-value=13 Score=17.67 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=20.9
Q ss_pred CHHHHHHHCCCHHHH----HCCCCCCCCCCCC
Q ss_conf 234667524867888----5078757888799
Q T0544 108 YDADINSYIDSAEYT----ESFGDNVVPYFRG 135 (135)
Q Consensus 108 ~~a~Id~lidS~EY~----~~FG~d~VPY~RG 135 (135)
++..|+.|..|.||. +.||.|..||.-|
T Consensus 195 in~~l~~l~~~G~~~~I~~ky~g~d~~~~~~~ 226 (232)
T 3i6v_A 195 FDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHCTTSCCCC--
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999969199999998779985647887
No 7
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=26.68 E-value=16 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.2
Q ss_pred HCCCCCHHHHHHHHHC
Q ss_conf 4689778999999842
Q T0544 45 RGGEISVRDFVRAVAL 60 (135)
Q Consensus 45 r~g~IsVreFVr~la~ 60 (135)
.+|.|+..||++.++.
T Consensus 74 ~~g~I~~~eF~~~~~~ 89 (202)
T 2bec_A 74 GSQRVDFPGFVRVLAH 89 (202)
T ss_dssp SCCCCCHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 7887549999999988
No 8
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4}
Probab=25.75 E-value=25 Score=15.95 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=26.1
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999998425788872266787068999888775078
Q T0544 52 RDFVRAVALSELYREKFFHNNAHNRFIELNFKHLLGR 88 (135)
Q Consensus 52 reFVr~la~S~~yr~~f~~~~~~~r~iEl~~khlLGR 88 (135)
+|++++...++-|++-||..+-+ ..|.-..|.+||+
T Consensus 181 ~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~ 216 (216)
T 2ppw_A 181 QDFLKDTISGKYFQEYFFENCQD-DEVAAYLKEVLAK 216 (216)
T ss_dssp HHHHHHHSCSHHHHHHHHHHCCC-HHHHHHHHC----
T ss_pred HHHHHHHHCCHHHHHHHHHHCCH-HHHHHHHHHHHCC
T ss_conf 99999886444589999981880-8999999998549
No 9
>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} SCOP: a.39.1.5 PDB: 1zmz_A 2ami_A
Probab=24.95 E-value=19 Score=16.74 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHHCCCCCHHHHHHHHHC
Q ss_conf 874689778999999842
Q T0544 43 LLRGGEISVRDFVRAVAL 60 (135)
Q Consensus 43 ~lr~g~IsVreFVr~la~ 60 (135)
.-.+|.|+..+|+..+..
T Consensus 78 ~~~~~~I~~~eF~~~~~~ 95 (172)
T 2ggm_A 78 KEGTGKMNFGDFLTVMTQ 95 (172)
T ss_dssp TTCCSEEEHHHHHHHHHH
T ss_pred CCCCCEEECHHHHHHHHH
T ss_conf 678973500789999999
No 10
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=24.53 E-value=37 Score=14.92 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=8.5
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 468977899999984
Q T0544 45 RGGEISVRDFVRAVA 59 (135)
Q Consensus 45 r~g~IsVreFVr~la 59 (135)
.+|.|+..||+..+.
T Consensus 57 ~dG~I~~~EF~~~m~ 71 (72)
T 2k7c_A 57 GDGRVDFEEFVRMMS 71 (72)
T ss_dssp SSCCEEHHHHHHHHH
T ss_pred CCCEEEHHHHHHHHC
T ss_conf 998384999999976
No 11
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=24.33 E-value=37 Score=14.90 Aligned_cols=18 Identities=11% Similarity=0.457 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999998987125
Q T0544 10 SSDEINAIIRAVYRQVLGN 28 (135)
Q Consensus 10 s~~~~~~vI~AaYrQVf~~ 28 (135)
|.+++.. |+++|++.|++
T Consensus 122 sn~ei~~-ik~aY~~~y~~ 139 (672)
T 1m9i_A 122 TNEQMHQ-LVAAYKDAYER 139 (672)
T ss_dssp CHHHHHH-HHHHHHHHSCS
T ss_pred CHHHHHH-HHHHHHHHHCC
T ss_conf 9999999-99999999777
No 12
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=38 Score=14.83 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 32799898889999999989871255432223
Q T0544 4 EWRAGASSDEINAIIRAVYRQVLGNDYVMSTE 35 (135)
Q Consensus 4 el~p~~s~~~~~~vI~AaYrQVf~~~~~~~~e 35 (135)
.+.+++|.++ |+.+||++.-..|+....
T Consensus 14 gv~~~as~~e----Ik~aYr~l~~~~hPDk~~ 41 (79)
T 2dn9_A 14 GVPRNASQKE----IKKAYYQLAKKYHPDTNK 41 (79)
T ss_dssp TCCTTCCHHH----HHHHHHHHHHHTCTTTCS
T ss_pred CCCCCCCHHH----HHHHHHHHHHHHHHCCCC
T ss_conf 9999949999----999999999864200012
No 13
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A*
Probab=23.15 E-value=38 Score=14.83 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 9898889999999989871255432223303578887468977899999984257
Q T0544 8 GASSDEINAIIRAVYRQVLGNDYVMSTERLTSAESLLRGGEISVRDFVRAVALSE 62 (135)
Q Consensus 8 ~~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~~ES~lr~g~IsVreFVr~la~S~ 62 (135)
+.+ .+.-..|+.+||.+|-.. .--++++..+|.+.... -.+++|+.-+.+|+
T Consensus 201 ~~~-~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~s~ 252 (259)
T 3hsq_A 201 GFS-PEVRNAIKHAYKVIYHSG-ISTRKALDELEASGNLI-EQVKYIIKFFRDSD 252 (259)
T ss_dssp TCC-HHHHHHHHHHHHHHHSSS-SCHHHHHHHHHTTCCCC-HHHHHHHHHHHHCS
T ss_pred CCC-HHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCCC-HHHHHHHHHHHCCC
T ss_conf 999-999999999999997179-98999999998635798-99999999997188
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=22.40 E-value=40 Score=14.66 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=6.4
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 998988899999999
Q T0544 7 AGASSDEINAIIRAV 21 (135)
Q Consensus 7 p~~s~~~~~~vI~Aa 21 (135)
.+.|.+++..+++.|
T Consensus 334 ~g~sgaDl~~lv~~A 348 (444)
T 2zan_A 334 DGYSGADISIIVRDA 348 (444)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 999999999999999
No 15
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=22.12 E-value=36 Score=15.00 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=21.8
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 468977899999984257888722667870
Q T0544 45 RGGEISVRDFVRAVALSELYREKFFHNNAH 74 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~yr~~f~~~~~~ 74 (135)
.++.+||.++.+.++.++ |...|-.....
T Consensus 4 ~~~~~sV~~WL~~lgL~~-Y~~~F~~~gi~ 32 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHHCCC
T ss_conf 999870999998886099-99999980978
No 16
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=22.02 E-value=35 Score=15.01 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.8
Q ss_pred HCCCCCHHHHHHHHHCCH
Q ss_conf 468977899999984257
Q T0544 45 RGGEISVRDFVRAVALSE 62 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~ 62 (135)
.+|.|+.+||+..++.+.
T Consensus 21 ~dg~idf~eF~~~~~~~~ 38 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKA 38 (110)
T ss_dssp STTCCCHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 999887999999998614
No 17
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=21.37 E-value=33 Score=15.17 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 788874689778999999842578887226678706899988877
Q T0544 40 AESLLRGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKH 84 (135)
Q Consensus 40 ~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~kh 84 (135)
.=|-|.+|+++--|+++.|.+++.-+.. |.. |..|--..+.
T Consensus 5 ~lSAL~DGEl~~~el~~~l~~d~e~~~~-W~~---YhlI~d~lr~ 45 (90)
T 1or7_C 5 QLSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMRG 45 (90)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHHC
T ss_conf 9999993898749999998759999999-999---9999999966
Done!