Query T0544 SnR168A, , 135 residues
Match_columns 135
No_of_seqs 113 out of 289
Neff 4.5
Searched_HMMs 15564
Date Fri May 21 18:04:02 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0544.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0544.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jf2a1 b.81.1.1 (A:1-262) UDP 51.9 9.2 0.00059 17.7 4.2 54 6-62 204-257 (262)
2 d1np3a1 a.100.1.2 (A:183-327) 45.3 6.7 0.00043 18.5 2.3 65 58-123 4-76 (145)
3 d1ucva_ a.60.1.2 (A:) Ephrin t 37.7 9.1 0.00058 17.7 2.0 29 45-74 4-32 (81)
4 d1e32a2 c.37.1.20 (A:201-458) 34.7 17 0.0011 16.0 3.7 54 63-117 162-216 (258)
5 d1oqpa_ a.39.1.5 (A:) Caltract 29.3 6.9 0.00044 18.4 0.3 20 45-64 58-77 (77)
6 d1avca1 a.65.1.1 (A:10-350) An 26.7 23 0.0015 15.2 5.6 103 10-128 114-216 (341)
7 d1g8ia_ a.39.1.5 (A:) Frequeni 26.2 24 0.0015 15.1 4.7 50 45-102 73-124 (187)
8 d1omra_ a.39.1.5 (A:) Recoveri 26.0 24 0.0015 15.1 4.2 53 45-105 76-130 (201)
9 d1or7c_ a.180.1.1 (C:) N-termi 25.3 17 0.0011 15.9 1.7 36 40-76 5-40 (66)
10 d1ksoa_ a.39.1.2 (A:) Calcycli 24.7 25 0.0016 14.9 2.6 64 9-72 28-92 (93)
11 d1or7c_ a.180.1.1 (C:) N-termi 23.2 20 0.0013 15.5 1.7 41 40-84 5-45 (66)
12 d3c1va1 a.39.1.2 (A:2-94) Calc 22.8 27 0.0018 14.7 4.2 64 9-72 28-92 (93)
13 d1auib_ a.39.1.5 (B:) Calcineu 22.2 20 0.0013 15.6 1.5 95 1-103 2-114 (165)
14 d1pvaa_ a.39.1.4 (A:) Parvalbu 20.3 28 0.0018 14.7 2.0 17 45-61 20-36 (109)
No 1
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} SCOP: d1j2za_
Probab=51.86 E-value=9.2 Score=17.68 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 799898889999999989871255432223303578887468977899999984257
Q T0544 6 RAGASSDEINAIIRAVYRQVLGNDYVMSTERLTSAESLLRGGEISVRDFVRAVALSE 62 (135)
Q Consensus 6 ~p~~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~~ES~lr~g~IsVreFVr~la~S~ 62 (135)
|.+.+.+++. .|+.+||.+|... ..-.+.+..+|.+..+.. .|++|+.-+..|+
T Consensus 204 r~~~~~~~i~-~l~~~~k~lf~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~fi~~s~ 257 (262)
T d2jf2a1 204 RRGFSREAIT-AIRNAYKLIYRSG-KTLDEVKPEIAELAETYP-EVKAFTDFFARST 257 (262)
T ss_dssp HTTCCHHHHH-HHHHHHHHHHTSC-CCHHHHHHHHHHHHTTCG-GGHHHHHHHHHCC
T ss_pred HCCCCHHHHH-HHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCH-HHHHHHHHHHCCC
T ss_conf 5278989999-9999999997269-978999999998522567-7999999985378
No 2
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=45.33 E-value=6.7 Score=18.52 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 842578887226678706899988877507899898--------899999999870682346675248678885
Q T0544 58 VALSELYREKFFHNNAHNRFIELNFKHLLGRAPYDQ--------AEVAAHAATYHSHGYDADINSYIDSAEYTE 123 (135)
Q Consensus 58 la~S~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~--------~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~ 123 (135)
-..||+|-.+-.=+-.....|+.+|.+|.--. +++ .|+---.++++++|+..+..++-|+.||-.
T Consensus 4 E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G-~~pe~Ay~e~~he~~lI~~li~~~Gl~~m~~~iSdTAeyG~ 76 (145)
T d1np3a1 4 ETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGE 76 (145)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01223110289997799999999999999839-86999999999701136899999739999998530888999
No 3
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.69 E-value=9.1 Score=17.71 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=23.2
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 468977899999984257888722667870
Q T0544 45 RGGEISVRDFVRAVALSELYREKFFHNNAH 74 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~yr~~f~~~~~~ 74 (135)
.+|.+||.++.+.+..++ |...|-+....
T Consensus 4 ~~~~~sV~~WL~~lgL~q-Y~~~F~~~gi~ 32 (81)
T d1ucva_ 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHCCCC
T ss_conf 999872999998886499-99999995996
No 4
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.73 E-value=17 Score=16.02 Aligned_cols=54 Identities=6% Similarity=-0.079 Sum_probs=31.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHCC
Q ss_conf 888722667870689998887750789989889999999987068234-6675248
Q T0544 63 LYREKFFHNNAHNRFIELNFKHLLGRAPYDQAEVAAHAATYHSHGYDA-DINSYID 117 (135)
Q Consensus 63 ~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a-~Id~lid 117 (135)
.|-..++-+.|+....+..++++|+..+.+...-. ....-.+.||.+ .|..+++
T Consensus 162 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~-~~la~~t~G~s~adl~~lv~ 216 (258)
T d1e32a2 162 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANETHGHVGADLAALCS 216 (258)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCH-HHHHHHCTTCCHHHHHHHHH
T ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCH-HHHHHCCCCCCHHHHHHHHH
T ss_conf 30232378999988999873220457633455303-44442066778999999999
No 5
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=29.31 E-value=6.9 Score=18.45 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=10.4
Q ss_pred HCCCCCHHHHHHHHHCCHHH
Q ss_conf 46897789999998425788
Q T0544 45 RGGEISVRDFVRAVALSELY 64 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~y 64 (135)
.+|.|+-.||++-+.++.+|
T Consensus 58 ~~G~I~~~EF~~~m~k~~~~ 77 (77)
T d1oqpa_ 58 DDNEIDEDEFIRIMKKTSLF 77 (77)
T ss_dssp SSSEECHHHHHHHHHHTTCC
T ss_pred CCCCEEHHHHHHHHHCCCCC
T ss_conf 88939199999999704789
No 6
>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.74 E-value=23 Score=15.17 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 98889999999989871255432223303578887468977899999984257888722667870689998887750789
Q T0544 10 SSDEINAIIRAVYRQVLGNDYVMSTERLTSAESLLRGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKHLLGRA 89 (135)
Q Consensus 10 s~~~~~~vI~AaYrQVf~~~~~~~~er~~~~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khlLGR~ 89 (135)
|.+++.. |+.+|++.|++.. +. .+.+.+ .|. .+.++-+|++....-....++.-.-.-++-.++.+-|+-
T Consensus 114 s~~ei~~-ik~aY~~~y~~~L--~~----dI~~e~-sg~--~~~ll~~ll~~~R~e~~~vd~~~a~~DA~~L~~A~~~k~ 183 (341)
T d1avca1 114 TNEQIHQ-LVAAYKDAYERDL--EA----DITGDT-SGH--FRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKW 183 (341)
T ss_dssp CHHHHHH-HHHHHHHHHCCCH--HH----HHHTTC-CTH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHTTTSS
T ss_pred CHHHHHH-HHHHHHHHCCCCH--HH----HHHHCC-CHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8799999-9999988538768--99----986346-688--999999998547777888897786889999999863547
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCC
Q ss_conf 989889999999987068234667524867888507875
Q T0544 90 PYDQAEVAAHAATYHSHGYDADINSYIDSAEYTESFGDN 128 (135)
Q Consensus 90 p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~d 128 (135)
..+. ..++.|+++.....+-. +. .+|.+..|.+
T Consensus 184 gtde---~~~i~IL~~rs~~hL~~-i~--~~Y~~~~g~~ 216 (341)
T d1avca1 184 GTDE---AQFIYILGNRSKQHLRL-VF--DEYLKTTGKP 216 (341)
T ss_dssp SCCH---HHHHHHHHHSCHHHHHH-HH--HHHHHHHSSC
T ss_pred CCCH---HHHEECCCCCCHHHHHH-HH--HHHHHHCCCC
T ss_conf 8761---35400006899999999-99--9999862888
No 7
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.16 E-value=24 Score=15.11 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=29.3
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHH
Q ss_conf 46897789999998425788872266787068999888775--07899898899999999
Q T0544 45 RGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKHL--LGRAPYDQAEVAAHAAT 102 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i 102 (135)
.+|.|+.+||+.++..-. .-+.-.-++.+|+.+ =|-.-.+..|+......
T Consensus 73 ~dg~I~~~EF~~~l~~~~--------~~~~~e~l~~~F~~~D~d~dG~i~~~El~~~~~~ 124 (187)
T d1g8ia_ 73 KDGRIEFSEFIQALSVTS--------RGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 124 (187)
T ss_dssp CSSEEEHHHHHHHHHHHH--------HCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHH
T ss_conf 999785999999999865--------4760336999999980699976969999999999
No 8
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.03 E-value=24 Score=15.09 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=27.0
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 46897789999998425788872266787068999888775--07899898899999999870
Q T0544 45 RGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKHL--LGRAPYDQAEVAAHAATYHS 105 (135)
Q Consensus 45 r~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~ 105 (135)
.+|.|+.+||+.++..-. +.+.-.-++.+|+.+ =|..-.+..|+......+..
T Consensus 76 ~~G~I~f~EF~~~~~~~~--------~~~~~~~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~ 130 (201)
T d1omra_ 76 SDGTLDFKEYVIALHMTS--------AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFK 130 (201)
T ss_dssp SSSEEEHHHHHHHHHHHH--------SSCGGGSHHHHHHHHCTTCSSSBCHHHHHHHHHHHHT
T ss_pred CCCEEEEHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998275315778887522--------2031899999999870478985289999999999874
No 9
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]} SCOP: d1or7f_
Probab=25.26 E-value=17 Score=15.93 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHH
Q ss_conf 7888746897789999998425788872266787068
Q T0544 40 AESLLRGGEISVRDFVRAVALSELYREKFFHNNAHNR 76 (135)
Q Consensus 40 ~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~~~~r 76 (135)
.=|-|.+|+++--++.+.|.+++-.|+. |..+.-.+
T Consensus 5 ~lSAL~DGE~~~~el~~~l~~d~e~r~~-W~~Yhli~ 40 (66)
T d1or7c_ 5 QLSALMDGETLDSELLNELAHNPEMQKT-WESYHLIR 40 (66)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHHHHHHH
T ss_conf 5555544899868899988438888999-99999999
No 10
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=24.66 E-value=25 Score=14.93 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 89888999999998987125543-22233035788874689778999999842578887226678
Q T0544 9 ASSDEINAIIRAVYRQVLGNDYV-MSTERLTSAESLLRGGEISVRDFVRAVALSELYREKFFHNN 72 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~~~~~-~~~er~~~~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~ 72 (135)
.|.+|+..++++-....+++..- .+-.++...--.=.+|.|+-.||+.-+++--.--..|+..+
T Consensus 28 ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~~~h~~~~~~ 92 (93)
T d1ksoa_ 28 LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDC 92 (93)
T ss_dssp EEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHCGGGTTC
T ss_pred ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87999999999864402456899999999999975799997969999999999999999997429
No 11
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=23.20 E-value=20 Score=15.54 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 788874689778999999842578887226678706899988877
Q T0544 40 AESLLRGGEISVRDFVRAVALSELYREKFFHNNAHNRFIELNFKH 84 (135)
Q Consensus 40 ~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~kh 84 (135)
.=|-|.+|+++--++++.|.+++-.+.. |.. |..|--+.+.
T Consensus 5 ~lSAL~DgE~~~~el~~~l~~d~e~~~~-W~~---Yhli~d~lr~ 45 (66)
T d1or7c_ 5 QLSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMRG 45 (66)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHHC
T ss_conf 9999992887739999998659999999-999---9999999865
No 12
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}
Probab=22.82 E-value=27 Score=14.71 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 8988899999999898712554322-233035788874689778999999842578887226678
Q T0544 9 ASSDEINAIIRAVYRQVLGNDYVMS-TERLTSAESLLRGGEISVRDFVRAVALSELYREKFFHNN 72 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~~~~~~~-~er~~~~ES~lr~g~IsVreFVr~la~S~~yr~~f~~~~ 72 (135)
.+.+|+..++.+.....+++...-+ -+++...=-.=++|.|+-.||+.-+.+--.--..+|..+
T Consensus 28 L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l~~~~~~~~~~~ 92 (93)
T d3c1va1 28 LNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 92 (93)
T ss_dssp ECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ECHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67999999999744210356899999999999982799997979999999999999999987249
No 13
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.20 E-value=20 Score=15.58 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCC---------------CHHHHHHHHHCCCCCHHHHHHHHHCCHHH
Q ss_conf 972327998988899999999898712-55432223---------------30357888746897789999998425788
Q T0544 1 MPLEWRAGASSDEINAIIRAVYRQVLG-NDYVMSTE---------------RLTSAESLLRGGEISVRDFVRAVALSELY 64 (135)
Q Consensus 1 ~P~el~p~~s~~~~~~vI~AaYrQVf~-~~~~~~~e---------------r~~~~ES~lr~g~IsVreFVr~la~S~~y 64 (135)
.|.+|-...|++++..+ +.+++..=- +...+..+ ++...=..=.+|.|+-.||++.++.-
T Consensus 2 ~~~~~~t~ft~eei~~l-~~~F~~~D~d~~G~I~~~E~~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~EFl~~~~~~--- 77 (165)
T d1auib_ 2 YPLEMCSHFDADEIKRL-GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF--- 77 (165)
T ss_dssp CCCCCCCSCCHHHHHHH-HHHHHHHCTTCCSEECHHHHTTSHHHHTCTTHHHHHHHHCTTCSSSEEHHHHHHHHGGG---
T ss_pred CHHHHCCCCCHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC---
T ss_conf 45777079999999999-99999887899897959999976602688899999999732310124466663210012---
Q ss_pred HHHCCCCCCCHHHHHHHHHHHC--CCCCCCHHHHHHHHHHH
Q ss_conf 8722667870689998887750--78998988999999998
Q T0544 65 REKFFHNNAHNRFIELNFKHLL--GRAPYDQAEVAAHAATY 103 (135)
Q Consensus 65 r~~f~~~~~~~r~iEl~~khlL--GR~p~~~~Ei~~~~~i~ 103 (135)
-........+...|+.+= |-...+..|+.......
T Consensus 78 ----~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~ 114 (165)
T d1auib_ 78 ----SVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 114 (165)
T ss_dssp ----CTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf ----2100257899999987502432223289999999975
No 14
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=20.29 E-value=28 Score=14.65 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.4
Q ss_pred HCCCCCHHHHHHHHHCC
Q ss_conf 46897789999998425
Q T0544 45 RGGEISVRDFVRAVALS 61 (135)
Q Consensus 45 r~g~IsVreFVr~la~S 61 (135)
.+|.|+-.||+..++.+
T Consensus 20 ~dG~idf~EF~~~~~~~ 36 (109)
T d1pvaa_ 20 AEGSFNHKKFFALVGLK 36 (109)
T ss_dssp STTCCCHHHHHHHHTCT
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 89978699999999871
Done!