Query T0545 MvR76 , , 158 residues
Match_columns 158
No_of_seqs 106 out of 499
Neff 6.5
Searched_HMMs 22458
Date Fri May 21 18:04:33 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0545.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0545.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyw_A TDG, G/T mismatch-speci 100.0 2.3E-43 0 263.0 13.9 154 1-157 10-185 (230)
2 1mug_A Protein (G:T/U specific 100.0 2.3E-37 1E-41 229.2 13.4 148 6-157 2-161 (168)
3 2c2q_A G/U mismatch-specific D 100.0 3.1E-36 1.4E-40 222.8 13.9 149 4-156 16-180 (199)
4 3ikb_A Uncharacterized conserv 98.2 1.9E-05 8.4E-10 49.8 10.6 130 3-144 25-172 (198)
5 1vk2_A Uracil-DNA glycosylase 97.5 0.0024 1.1E-07 38.0 12.2 133 7-156 41-194 (204)
6 1ui0_A Uracil-DNA glycosylase; 97.5 0.0015 6.6E-08 39.1 11.0 129 10-156 30-179 (205)
7 2d3y_A Uracil-DNA glycosylase; 97.4 0.00061 2.7E-08 41.3 7.9 131 10-145 47-199 (219)
8 1oe4_A SMUG1, single-strand se 97.3 0.001 4.6E-08 40.0 8.3 121 10-142 50-222 (247)
9 2owr_A UDG, uracil-DNA glycosy 87.8 1.3 5.9E-05 22.6 8.4 126 11-145 57-190 (218)
10 2j8x_A Uracil-DNA glycosylase; 81.8 2.6 0.00011 21.0 9.3 128 11-142 56-195 (231)
11 3cxm_A Uracil-DNA glycosylase; 80.6 2.8 0.00013 20.7 11.1 130 11-143 90-233 (268)
12 2boo_A UDG, uracil-DNA glycosy 78.4 3.3 0.00015 20.3 9.7 127 12-143 73-213 (247)
13 3fci_A UDG, uracil-DNA glycosy 74.5 4.3 0.00019 19.7 8.5 132 10-143 52-194 (223)
14 2zhx_A UDG, uracil-DNA glycosy 58.2 9.3 0.00041 17.8 10.4 128 11-142 68-208 (238)
15 4eug_A UDG, UNG, protein (glyc 56.8 9.8 0.00044 17.7 10.3 128 11-143 53-194 (229)
16 1udg_A Uracil-DNA glycosylase; 41.8 17 0.00077 16.3 8.8 127 11-143 77-217 (244)
17 1zps_A PRA-CH, phosphoribosyl- 21.7 14 0.00062 16.8 -0.2 47 4-50 21-75 (138)
No 1
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 2rba_A*
Probab=100.00 E-value=2.3e-43 Score=262.98 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 97567786327888479871488677785255678887506899999717887678847889999977960223110023
Q T0545 1 MIKRGFPAVLDENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 1 m~~~~~~p~~~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
+++++|||+++++++|||||+|||.+|+++|+||+||+|+||++|+++++++.+ ..++++..+|+.+||||||+|++|+
T Consensus 10 ~~~~~lPd~l~p~lrvLivG~~PG~~S~~~G~yYa~P~N~FW~~L~~~glt~~~-~~~~~~~~ll~~~gigltdvV~r~~ 88 (230)
T 1wyw_A 10 LLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQ-LNHMDDHTLPGKYGIGFTNMVERTT 88 (230)
T ss_dssp GGGCCCCCBCCSSCSEEEEESSCCHHHHHHTSSSCSSSBCHHHHHHHTTSSSSC-CCGGGGGGHHHHHSEEEEESCCSCC
T ss_pred HHHCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 973779987799986899826979778964998658068999999997378755-7877887777640445444314678
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH------------------CCCCCEEEEECCCCHH
Q ss_conf 57534--444301355448999985698517987180578887641------------------2468458870798745
Q T0545 81 REGSQ--DSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLL------------------RGMGYETKVLPSSSGA 140 (158)
Q Consensus 81 R~gs~--D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~------------------~~~~~~~~vlPStSpa 140 (158)
+.++. .+++.+.. +++.+.+..+ +++.|+|+|++|++.+.+. ...++.+|||||||||
T Consensus 89 ~~~~~~~~~E~~~~~-~~L~~~I~~~-~P~vi~f~Gk~a~~~f~~~~~~~~~~~~~~G~q~~~~~~~~~~v~vlPS~Sp~ 166 (230)
T 1wyw_A 89 PGSKDLSSKEFREGG-RILVQKLQKY-QPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSAR 166 (230)
T ss_dssp SCGGGCCHHHHHHHH-HHHHHHHHHH-CCSEEEEESHHHHHHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTT
T ss_pred CCCCCCCHHHHHHHH-HHHHHHHHHH-CCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf 888999889999868-9999999981-99889663999999997400266642132355643358887459973897088
Q ss_pred HHCCC--HHHHHHHHHHHC
Q ss_conf 43267--779999999960
Q T0545 141 NRRFS--KNRESEWEAVFR 157 (158)
Q Consensus 141 na~~~--~ek~~~W~~~~~ 157 (158)
||+++ +||+..|+++.+
T Consensus 167 na~~~r~~dk~~~~~~L~~ 185 (230)
T 1wyw_A 167 CAQFPRAQDKVHYYIKLKD 185 (230)
T ss_dssp CSSCCSGGGTHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHH
T ss_conf 7066526999999999999
No 2
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A
Probab=100.00 E-value=2.3e-37 Score=229.18 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=125.2
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC
Q ss_conf 78632788847987148867778525567888750689999971788767884788999997796022311002357534
Q T0545 6 FPAVLDENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGSQ 85 (158)
Q Consensus 6 ~~p~~~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs~ 85 (158)
++|+++++++|||||++||.+|.++|+||+||+|+||++|.++++++.+. +.++..+|..+|||+||+|.+|++.++.
T Consensus 2 ~~d~i~p~~~vlivG~aPG~~s~~~g~~f~~p~n~fw~~l~~~~~~~~~~--~~~~~~~l~~~~i~l~dvv~~~~~~~~~ 79 (168)
T 1mug_A 2 VEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQL--KPQEAQHLLDYRCGVTKLVDRPTVQANE 79 (168)
T ss_dssp CCCBCCTTCSEEEEESSCCHHHHHHSSTTCSTTCCHHHHHHHTTSSSSCC--CGGGGGGGGGGTEEEEESCCCCCSSGGG
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC--CHHHHHHHHHCCEEEECCCCCCCCCCCC
T ss_conf 88765999988998279896588559987786188999999965998655--6777655332366772376778888899
Q ss_pred H--HHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHC----------CCCCEEEEECCCCHHHHCCCHHHHHHHH
Q ss_conf 4--443013554489999856985179871805788876412----------4684588707987454326777999999
Q T0545 86 D--SKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLR----------GMGYETKVLPSSSGANRRFSKNRESEWE 153 (158)
Q Consensus 86 D--~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~~----------~~~~~~~vlPStSpana~~~~ek~~~W~ 153 (158)
+ .++++..+++.+.|....|+ .|+|+|++|++...+.. ..+..+++||||||||+...++|.+.|+
T Consensus 80 ~~~~Ei~~~~~~L~~~l~~~~P~--iiv~lG~~A~~~~l~~~~~~~g~~~~~~~~~~~~vlPspS~~~~~~~e~k~~~w~ 157 (168)
T 1mug_A 80 VSKQELHAGGRKLIEKIEDYQPQ--ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYR 157 (168)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCS--EEEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC--EEEECCHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCHHHHCCHHHHHHHHH
T ss_conf 89999999899999999980988--8998595999998477766445400025897779931898778289999999999
Q ss_pred HHHC
Q ss_conf 9960
Q T0545 154 AVFR 157 (158)
Q Consensus 154 ~~~~ 157 (158)
++.+
T Consensus 158 ~l~~ 161 (168)
T 1mug_A 158 ELDQ 161 (168)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 3
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Probab=100.00 E-value=3.1e-36 Score=222.85 Aligned_cols=149 Identities=23% Similarity=0.251 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf 67786327888479871488677785255678887506899999717887678847889999977960223110023575
Q T0545 4 RGFPAVLDENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREG 83 (158)
Q Consensus 4 ~~~~p~~~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~g 83 (158)
+.+||+++++++|||||+|||.+|.++|+||+||+|+||++|+++++++.... .+++..|.++|||+||+|++|++.
T Consensus 16 ~~lP~~~~~~~~vLivG~~PG~~s~~~G~~fagp~n~fw~~l~~~gl~~~~~~--~~~~~~l~~~~i~~td~v~~~~~~- 92 (199)
T 2c2q_A 16 YLVPDVLQPGLTLVLVGTAPSGISARARAYYANPENKFWRTLHAVGLTPRQLV--PQEYATLPQYGLGLTDVAKRHSGV- 92 (199)
T ss_dssp CSSCCBCCTTCSEEEEESCCCHHHHHHTSSSCSTTCCHHHHHHHTTSSSSCCC--GGGGGGGGGGTEEEEESCCSCCSC-
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCC--HHHHCCCCCCCCEEECCCCCCCCC-
T ss_conf 75898779998489984697987997498756862078999988516887778--666233112461354135656888-
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHC---------------CCCCEEEEECCCCHHHHCCC-HH
Q ss_conf 344443013554489999856985179871805788876412---------------46845887079874543267-77
Q T0545 84 SQDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLR---------------GMGYETKVLPSSSGANRRFS-KN 147 (158)
Q Consensus 84 s~D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~~---------------~~~~~~~vlPStSpana~~~-~e 147 (158)
++|..+++...+++...++.+ +++.|+|+|++|++.+.+.. ..++.+++||||||+|+... ++
T Consensus 93 ~~~~~~~e~~~~~L~~~i~~~-~P~vvv~lG~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~lphpS~~~~~~~~~~ 171 (199)
T 2c2q_A 93 AAALPGEAWRPDELRRKVEHY-RPRIVAFTSKRGASETLGVPTGKLPYGPQPQPLDWPAETELWVLPSTSPLGHNHFRLE 171 (199)
T ss_dssp GGGSCGGGCCHHHHHHHHHHH-CCSEEEESSHHHHHHHHCSCGGGCCSEECCCCSSCCTTCEEEECCCCSGGGTTTCCSH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCHH
T ss_conf 788756666676799999960-9968998177999998535644343343320023567874456438885870733256
Q ss_pred HHHHHHHHH
Q ss_conf 999999996
Q T0545 148 RESEWEAVF 156 (158)
Q Consensus 148 k~~~W~~~~ 156 (158)
+..+|.+.+
T Consensus 172 ~~~~l~~~l 180 (199)
T 2c2q_A 172 PWQALGDRV 180 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 4
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=98.18 E-value=1.9e-05 Score=49.82 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=87.2
Q ss_pred CCCCCCCC--CCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 56778632--7888479871488677785255678887506899999717887678847889999977960223110023
Q T0545 3 KRGFPAVL--DENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 3 ~~~~~p~~--~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
+++..||+ +++++|||+|-+||...-++|.-|..+.-+ .|...++. +.+ .+.....|.+++++. |.
T Consensus 25 ~~~~~Pv~~g~~~A~imiIGeAPG~~Ed~~G~PFvG~sG~---~L~~~lGl-----~r~---~~y~~~~v~i~n~~~-c~ 92 (198)
T 3ikb_A 25 EKNIEPLFAAPKTARINIVGQAPGIKAQESRLYWNDKSGD---RLREWMGV-----DYD---TFYHSGYFAVIPMDF-YY 92 (198)
T ss_dssp TTTCCCCCBCCTTCCEEEECSCCCHHHHHHCCSSCSHHHH---HHHHHHTC-----CHH---HHHHSSCEEECCSCS-SC
T ss_pred HCCCCCEEECCCCCCEEEECCCCCHHHHCCCCCCCCCHHH---HHHHHHCC-----CHH---HCCCCCCEEEEECCC-CC
T ss_conf 2499734545999888996489976551049988680678---99999476-----164---415667889996444-57
Q ss_pred CCCC--CH-HHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH-------------HCCCCCEEEEECCCCHHHHCC
Q ss_conf 5753--44-4430135544899998569851798718057888764-------------124684588707987454326
Q T0545 81 REGS--QD-SKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPL-------------LRGMGYETKVLPSSSGANRRF 144 (158)
Q Consensus 81 R~gs--~D-~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~-------------~~~~~~~~~vlPStSpana~~ 144 (158)
-... -| ....+..+.-...++.+.++++.|+..|+.|.++.-. ....+..++.+|-+||+|..+
T Consensus 93 Pp~nr~~~~~p~~~c~~~~~~~l~~~l~~PklIv~LG~~A~~~~l~~~~~~~l~~~~~~~~~~~~~~~pl~HPS~~N~~w 172 (198)
T 3ikb_A 93 PGKGKSGDLPPRKGFAQKWHQPILDLLPDIQLTILIGNYAQKYYLHQKSSVKLTDTVAHYKKYLPDYFPLVHPSPRNQIW 172 (198)
T ss_dssp CCBCSSSBCCCCTTHHHHHHHHHHTTCTTCCEEEEESHHHHHHHTTCCTTSCHHHHHHTGGGGTTTEEEECCCCGGGHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHH
T ss_conf 99999999985699999999999996589758998789999988087778863656540155388868862888355178
No 5
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=97.52 E-value=0.0024 Score=37.96 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCCC---CCCCCEEEEECCCCHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCC
Q ss_conf 8632---788847987148867778525567888-750689999971788767884788999997796022311002357
Q T0545 7 PAVL---DENTEILILGSLPSDESIRKQQYYGNP-GNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSRE 82 (158)
Q Consensus 7 ~p~~---~~~~~vLilGs~Pg~~S~~~g~yYa~p-~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~ 82 (158)
.||+ +.+++|||+|-.||...-++|..|..+ +..++++|...+... ..+-+|+++..+...
T Consensus 41 ~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~sG~~L~~~l~~~gl~~---------------~~v~itn~~kc~pp~ 105 (204)
T 1vk2_A 41 NVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRR---------------EDVYICNVVKCRPPN 105 (204)
T ss_dssp SCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCG---------------GGSEEEESCSSCCGG
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHCCEEHHHHHHHHHHHHHHHCCCC---------------CCEEEEEEECCCCCC
T ss_conf 87788899987889995433566787487606636889999987620230---------------364786443144764
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH--------HC------CCCCEEEEECCCCHHHHCCCH
Q ss_conf 5--3444430135544899998569851798718057888764--------12------468458870798745432677
Q T0545 83 G--SQDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPL--------LR------GMGYETKVLPSSSGANRRFSK 146 (158)
Q Consensus 83 g--s~D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~--------~~------~~~~~~~vlPStSpana~~~~ 146 (158)
+ ....++..-.+-....|..-.| +.|++.|..|.+..-. .. ..+..++.++.+|..+...+.
T Consensus 106 ~~~p~~~e~~~C~~~L~~eI~~i~P--kiiv~LG~~A~~~ll~~~~~~i~~~rG~~~~~~~~~~v~pt~HPs~llrn~~~ 183 (204)
T 1vk2_A 106 NRTPTPEEQAACGHFLLAQIEIINP--DVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNRSN 183 (204)
T ss_dssp GCCCCHHHHHHHHHHHHHHHHHHCC--SEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCCCH
T ss_pred CCCCCHHHHHHHCHHHHHHHHCCCC--CEEEECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCCCH
T ss_conf 4456709999745223555540487--31773065889998624566543136735886899879998497798779387
Q ss_pred -HHHHHHHHHH
Q ss_conf -7999999996
Q T0545 147 -NRESEWEAVF 156 (158)
Q Consensus 147 -ek~~~W~~~~ 156 (158)
.|...|..+.
T Consensus 184 ~~k~~~~~Dl~ 194 (204)
T 1vk2_A 184 ELRRIVLEDIE 194 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 88999999999
No 6
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=97.51 E-value=0.0015 Score=39.15 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=76.4
Q ss_pred CCCCCCEEEEECCCCHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC---C
Q ss_conf 27888479871488677785255678887-5068999997178876788478899999779602231100235753---4
Q T0545 10 LDENTEILILGSLPSDESIRKQQYYGNPG-NDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGS---Q 85 (158)
Q Consensus 10 ~~~~~~vLilGs~Pg~~S~~~g~yYa~p~-N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs---~ 85 (158)
=+.+++|||+|-+||...-+.|..|..+. ..+.++|..++... + .+-+|++|. |...+. .
T Consensus 30 G~~~a~imiVgeaPg~~e~~~G~pf~G~sG~lL~~~l~~~gl~r------~---------~vyitn~vk-c~p~~~~~p~ 93 (205)
T 1ui0_A 30 GNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPR------E---------EVYITNIVK-CRPPQNRAPL 93 (205)
T ss_dssp ECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCG------G---------GSEEEESCS-SCCGGGCCCC
T ss_pred CCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH------H---------HEEEEEEEE-ECCCCCCCCC
T ss_conf 99999999997821454444441115350436888899839889------9---------958861464-6033456798
Q ss_pred HHHHHHHH-HHHHHHHHHHCCCCCEEEECCCHHHHHHHHH-------C-----CCCCEEEEECCCCHHHHCCC----HHH
Q ss_conf 44430135-5448999985698517987180578887641-------2-----46845887079874543267----779
Q T0545 86 DSKIGDEE-INDFSGLKEMVPKLRLICFNGRKAGEYEPLL-------R-----GMGYETKVLPSSSGANRRFS----KNR 148 (158)
Q Consensus 86 D~~i~~~~-~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~-------~-----~~~~~~~vlPStSpana~~~----~ek 148 (158)
..+++.-. +-....|..- +++.|+..|+.|++..-.. + ..+..++.++.+|.+...-+ ..|
T Consensus 94 ~~ei~~C~~~~L~~ei~lv--~Pkiii~lG~~A~~~ll~~~~~~~~~rG~~~~~~g~~v~~tyHPs~LlrnP~~~~~~~K 171 (205)
T 1ui0_A 94 PDEAKICTDKWLLKQIELI--APQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAPGSPK 171 (205)
T ss_dssp HHHHHHHHHHTHHHHHHHH--CCSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCEEEECCCHHEEHHHHCCCCHHHHCCCEEECCCCEEEEECCCHHHHHCCCCCCCHHH
T ss_conf 5999999999999999854--88489952501000113103520121483486289779998286898769253430467
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q T0545 149 ESEWEAVF 156 (158)
Q Consensus 149 ~~~W~~~~ 156 (158)
...|..+.
T Consensus 172 ~~~w~Dl~ 179 (205)
T 1ui0_A 172 HLTWLDIQ 179 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 89999999
No 7
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=97.40 E-value=0.00061 Score=41.34 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCHHH-HHCC-CCCCCC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC--
Q ss_conf 278884798714886777-8525-567888-75068999997178876788478899999779602231100235753--
Q T0545 10 LDENTEILILGSLPSDES-IRKQ-QYYGNP-GNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGS-- 84 (158)
Q Consensus 10 ~~~~~~vLilGs~Pg~~S-~~~g-~yYa~p-~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs-- 84 (158)
=+.+++|+|+|-.||... .+.| .+.+.+ +..+-++|...+.......... .-+....+-+|+++..+. .+.
T Consensus 47 G~~~A~imiVGeaPG~~ee~~~g~pf~g~~sG~lL~~~l~~~gl~~~~~~~~~---~~~~~~~~y~tn~vk~rp-p~nrp 122 (219)
T 2d3y_A 47 GDPEARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPESLPG---DDLRLYGVYLTAAVRCAP-PKNKP 122 (219)
T ss_dssp ECTTCSEEEEESCCCTTTHHHHSSTTTTSHHHHHHHHHHHHTTCBSCSCCCTT---SCCCBSSEEEEESCCSCC-GGGCC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCHHCCC---CCCCCCCEEECCCCCCCC-CCCCC
T ss_conf 99774789960542001023478641034037788888998467643010012---101011201015532367-66689
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH-----------------CCCCCEEEEECCCCHHHHCCC
Q ss_conf 4444301355448999985698517987180578887641-----------------246845887079874543267
Q T0545 85 QDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLL-----------------RGMGYETKVLPSSSGANRRFS 145 (158)
Q Consensus 85 ~D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~-----------------~~~~~~~~vlPStSpana~~~ 145 (158)
-..++..-.+-.+..+..- .+++.|+..|+.|.+..... ...++.++..--+|.+|....
T Consensus 123 p~~ee~~~~~~ll~e~~~l-i~PkvIv~LG~~A~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~viptyHPS~llr~~~ 199 (219)
T 2d3y_A 123 TPEELRACARWTEVELGLL-PEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTG 199 (219)
T ss_dssp CHHHHHHHHHHHHHHHHTC-TTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHHHHT
T ss_pred CCHHHHHHCCHHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 7088888486679999984-2861454303899998776516521223420221773799938999868886665879
No 8
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=97.32 E-value=0.001 Score=40.05 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=68.9
Q ss_pred CCCCCCEEEEECCCCHH-HHHCCCCCCC------------------------------------CCCCHHHHHHHHHCCC
Q ss_conf 27888479871488677-7852556788------------------------------------8750689999971788
Q T0545 10 LDENTEILILGSLPSDE-SIRKQQYYGN------------------------------------PGNDFWRLVGHAIGEN 52 (158)
Q Consensus 10 ~~~~~~vLilGs~Pg~~-S~~~g~yYa~------------------------------------p~N~FW~il~~~~~~~ 52 (158)
.+...++||||.|||.. .+++|=-++. -+-++|.++.+.++.+
T Consensus 50 ~~~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~p 129 (247)
T 1oe4_A 50 CKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQP 129 (247)
T ss_dssp CSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 28999889984289877786408785887999878536774678964477776535466425652988999999873998
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCCCC----CCCCCCCHHHHHHHHH--------HHHHHHHHHCCCCCEEEECCCHHHHH
Q ss_conf 76788478899999779602231100----2357534444301355--------44899998569851798718057888
Q T0545 53 LQDMAYEKKLKTLKHNRIGLWDVFKA----GSREGSQDSKIGDEEI--------NDFSGLKEMVPKLRLICFNGRKAGEY 120 (158)
Q Consensus 53 ~~~~~~e~~~~~L~~~gIgl~Dvv~~----~~R~gs~D~~i~~~~~--------~d~~~l~~~~p~i~~i~f~G~~A~~~ 120 (158)
.. -+ ..+=+||+|-= .+-++---.++...+- .-+.+++... +++.|+-.|+.|.+.
T Consensus 130 e~--ff---------~~~fv~N~CPL~f~~~~GkN~TP~~l~~~~~~~l~~~Cd~~L~~vv~~l-~p~~VVgVG~~Ae~r 197 (247)
T 1oe4_A 130 ET--FF---------KHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVL-GVKLVIGVGRFSEQR 197 (247)
T ss_dssp HH--HH---------TTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCSEEEEESHHHHHH
T ss_pred HH--HH---------HHHEEEECCCCEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHH
T ss_conf 89--86---------6340451377223288998688133789999999999999999999862-972899977899999
Q ss_pred HHHH---CCCCCEEEEECCCCHHHH
Q ss_conf 7641---246845887079874543
Q T0545 121 EPLL---RGMGYETKVLPSSSGANR 142 (158)
Q Consensus 121 ~~~~---~~~~~~~~vlPStSpana 142 (158)
.+.- .+.++++..+|-+|||+.
T Consensus 198 a~~al~~~g~~V~v~~i~HPSPasp 222 (247)
T 1oe4_A 198 ARKALMAEGIDVTVKGIMHPSPRNP 222 (247)
T ss_dssp HHHHHHHTTCSCEEEEECCCCTTCG
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCH
T ss_conf 9998514699836865589999880
No 9
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A
Probab=87.82 E-value=1.3 Score=22.59 Aligned_cols=126 Identities=12% Similarity=0.026 Sum_probs=72.7
Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCC------HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC
Q ss_conf 788847987148867778525567888750------68999997178876788478899999779602231100235753
Q T0545 11 DENTEILILGSLPSDESIRKQQYYGNPGND------FWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGS 84 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~------FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs 84 (158)
.++.||+|+|--|=.. .+.|-.|+-|.+- .-+.|....+.+.+ ...+ +-..+|+=|.|.+-.+.. |.
T Consensus 57 ~~~vKVVIlGQDPYp~-~a~GLaFSv~~~~ppSL~NI~kel~~~~~~~~~-~~~~----~wa~QGVLLLNt~LTv~~-g~ 129 (218)
T 2owr_A 57 LRNKRVCVCGIDPYPK-DGTGVPFESPNFTKKSIKEIASSISRLTGVIDY-KGYN----LNIIDGVIPWNYYLSCKL-GE 129 (218)
T ss_dssp STTCCEEEEESSCCSS-CCCSSTTCCTTSCCHHHHHHHHHHHHHHCCCCC-SEEC----GGGSTTEEEEESSSCEET-TC
T ss_pred HHHCEEEEEECCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCC----HHHHCCEEEEEEEEEEEC-CC
T ss_conf 8894699984589997-676731578998647999999986652398888-9876----365388788751388756-98
Q ss_pred CHH--HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHCCC
Q ss_conf 444--4301355448999985698517987180578887641246845887079874543267
Q T0545 85 QDS--KIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRRFS 145 (158)
Q Consensus 85 ~D~--~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~~~ 145 (158)
..+ ...+...+++-+.+..... .+++-|+++.+...........+..-|++|+|++.|.
T Consensus 130 ~~sH~~~We~fT~~ii~~l~~~~~--v~~ll~~~~~~~~~~~~~~~~~ii~~~hPss~~rgF~ 190 (218)
T 2owr_A 130 TKSHAIYWDKISKLLLQHITKHVS--VLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFE 190 (218)
T ss_dssp TTTTHHHHHHHHHHHHHHHTTTCS--EEEEECHHHHHHHHHHCSCCCEEEEECCTTC----CC
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC--EEEEEECHHHHHHHHCCCCCCEEEECCCCCCCCCCCC
T ss_conf 787766909999999999817797--5999865898855534798828995898744467989
No 10
>2j8x_A Uracil-DNA glycosylase; hydrolase/inhibitor, hydrolase/inhibitor complex, EBV, DNA repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=81.77 E-value=2.6 Score=20.97 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCC--------HHHHHHHHH-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 788847987148867778525567888750--------689999971-78876788478899999779602231100235
Q T0545 11 DENTEILILGSLPSDESIRKQQYYGNPGND--------FWRLVGHAI-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGSR 81 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~--------FW~il~~~~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R 81 (158)
.++.||+|+|--|=...-+.|-.|+-+.+. .-|-|..-. +...+. .........+|+-|.|.+-.++.
T Consensus 56 ~~~vKVVIlGQDPY~~~~A~GLaFSv~~~~~~ppSL~NI~kel~~d~~~~~~~~---~g~L~~Wa~QGVLLLNt~LTv~~ 132 (231)
T 2j8x_A 56 PSDIKVVILGQDPYHGGQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPD---HGCLDAWASQGVLLLNTILTVQK 132 (231)
T ss_dssp GGGCCEEEEECSCCSSSCCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCS---SCCCHHHHTTTEEEEESSCCEET
T ss_pred HHHEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHCCEEEECCEEEEEC
T ss_conf 879079998557998885020677515899798459999999986458788899---89868997498688614389738
Q ss_pred CCC-CHHHH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 753-44443-01355448-999985698517987180578887641246845887079874543
Q T0545 82 EGS-QDSKI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANR 142 (158)
Q Consensus 82 ~gs-~D~~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana 142 (158)
..+ +.+++ .+.....+ ..|.+..+.+ ..+.=|+.|.+...........+...+=+||+++
T Consensus 133 g~~~SH~~~gWe~ft~~li~~l~~~~~~v-VfiLWG~~A~~~~~~i~~~~h~Il~~~HPSPl~~ 195 (231)
T 2j8x_A 133 GKPGSHADIGWAWFTDHVISLLSERLKAC-VFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQ 195 (231)
T ss_dssp TBTTTTTTSSHHHHHHHHHHHHHHHCSSC-EEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCE-EEEEECHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 99888667992876999999997177884-9999586999988627887877997279995224
No 11
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi}
Probab=80.61 E-value=2.8 Score=20.73 Aligned_cols=130 Identities=11% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCC--------CHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-7852556788875--------0689999971-7887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGN--------DFWRLVGHAI-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N--------~FW~il~~~~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. --+.|-.|+-+.+ ..-|-|..-+ +...+.. ....-..+.|+=|.|.+-.|+
T Consensus 90 ~~~vKVVIlGQDPYh~~gqA~GLaFSv~~~~k~PpSLrNI~KeL~~d~~~~~~p~~---g~L~~Wa~QGVLLLNt~LTv~ 166 (268)
T 3cxm_A 90 FRGLKVVLLGQDPYHDLHQAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKH---GYLQSWSEQGMLMLNATLTVE 166 (268)
T ss_dssp STTCCEEEEESSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSS---CCCHHHHTTTEEEEESSCCEE
T ss_pred HHHCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHCCEEEEEEEEEEE
T ss_conf 87947999733699899974058775589889980399999999975177888998---407889849868884338887
Q ss_pred CCCC-CHHHHHHH--HHHH-HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 5753-44443013--5544-89999856985179871805788876412468458870798745432
Q T0545 81 REGS-QDSKIGDE--EIND-FSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs-~D~~i~~~--~~~d-~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
...+ +-+.++-| .... ++.|..+.++.-....=|+.|............-+..-+-+||+.|+
T Consensus 167 ~g~~~SH~~~~gWe~fT~~vI~~l~~~~~~~vVF~LWG~~Aq~~~~~i~~~~h~Il~s~HPSPLSa~ 233 (268)
T 3cxm_A 167 AHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSAN 233 (268)
T ss_dssp TTCTTTTTTTSCHHHHHHHHHHHHHHHCSSCCEEEEESHHHHGGGGGSCTTTSEEEEECCSSHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 7864421475689999999999985158887799970827999885089878669964799974445
No 12
>2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans}
Probab=78.37 E-value=3.3 Score=20.32 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCCCC--------HHHHHHHHH-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 888479871488677-78525567888750--------689999971-78876788478899999779602231100235
Q T0545 12 ENTEILILGSLPSDE-SIRKQQYYGNPGND--------FWRLVGHAI-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGSR 81 (158)
Q Consensus 12 ~~~~vLilGs~Pg~~-S~~~g~yYa~p~N~--------FW~il~~~~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R 81 (158)
++.||+|||--|=.. .-+.|-.|+-+.+. .-+-|..-. +...+. ........+.|+=|.|.+-.+..
T Consensus 73 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~ppSL~NI~kel~~d~~~~~~~~---~g~L~~Wa~QGVLLLNt~LTv~~ 149 (247)
T 2boo_A 73 GEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPK---HGYLRSWAEQGVLLLNAVLTVRA 149 (247)
T ss_dssp GGCCEEEEESSCCCSTTCCSSSSSCCCTTSCCCHHHHHHHHHHHHHSTTCCCCS---SCCCHHHHTTTEEEEESSCCEET
T ss_pred HHCEEEEEECCCCCCCCEECEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC---CCCHHHHHHCCEEEEEEEEEECC
T ss_conf 577599995568855552211200311797899327899999998607987888---86266697687789860165218
Q ss_pred CCCCHH--HH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 753444--43-01355448-9999856985179871805788876412468458870798745432
Q T0545 82 EGSQDS--KI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 82 ~gs~D~--~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
|...+ .+ .+...+.+ +.|..+...+ ..++=|+.|.+...........+..-+-+||+.++
T Consensus 150 -g~~~SH~~~gWe~fT~~ii~~i~~~~~~v-VfiLWG~~Aq~~~~~i~~~~h~il~s~HPSPls~~ 213 (247)
T 2boo_A 150 -GQANSHQGKGWEHFTDAVIKAVNAKEERV-VFILWGSYARKKKKLITGKNHVVIESGHPSPLSEQ 213 (247)
T ss_dssp -TBTTTTTTSSHHHHHHHHHHHHHTCSSCC-EEEEESHHHHGGGGGCCCTTCEEEEECCSSTTTGG
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEEEHHHHHHHHHHCCCCCCEEEECCCCCHHHCC
T ss_conf -87566521309999999999998256885-99971578998874046778659970898811138
No 13
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 4skn_E* 1okb_A
Probab=74.48 E-value=4.3 Score=19.71 Aligned_cols=132 Identities=9% Similarity=0.014 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCCCHH-HHHCCCCCCCCCC-----CHHHHHHHHHCCCCC--CCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 27888479871488677-7852556788875-----068999997178876--788478899999779602231100235
Q T0545 10 LDENTEILILGSLPSDE-SIRKQQYYGNPGN-----DFWRLVGHAIGENLQ--DMAYEKKLKTLKHNRIGLWDVFKAGSR 81 (158)
Q Consensus 10 ~~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N-----~FW~il~~~~~~~~~--~~~~e~~~~~L~~~gIgl~Dvv~~~~R 81 (158)
=.++.||+|+|--|=.. --+.|-.|+-+.+ ..-.|+-++- .+.. ..+..-...-..+.|+=|.|++-.++.
T Consensus 52 ~~~~vKVVIlGQDPY~~~~~A~GLaFSv~~~~~~ppSL~NI~kel~-~d~~~~~~~~~gdL~~Wa~QGVLLLNt~LTv~~ 130 (223)
T 3fci_A 52 DIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELS-TDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRA 130 (223)
T ss_dssp CGGGCCEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHH-HHSTTCCCCSSCCTHHHHTTTEEEEESSCCEET
T ss_pred CHHHCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCHHHHHHCCEEEEECCEEEEC
T ss_conf 9857479999435876677410033312588545850899999998-751588788866046675177688866189975
Q ss_pred CCC-CHHHH-HHHHHHH-HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 753-44443-0135544-89999856985179871805788876412468458870798745432
Q T0545 82 EGS-QDSKI-GDEEIND-FSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 82 ~gs-~D~~i-~~~~~~d-~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
..+ +-+.+ .+..... +..|..+...+ ..+.=|+.|.+...........+...+=+||+.++
T Consensus 131 ~~~~SH~~~gWe~ft~~vi~~l~~~~~~v-Vf~lWG~~A~~~~~~i~~~~h~ii~~~HPSPlsa~ 194 (223)
T 3fci_A 131 HQANSHKERGWEQFTDAVVSWLNQNSNGL-VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY 194 (223)
T ss_dssp TCTTTTTTSSHHHHHHHHHHHHHHHCCSC-EEEEESHHHHHHTTTCCTTTSEEEEECCSSTTTGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EEEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 53457521268999999999986647783-98743877999987515789869980699820237
No 14
>2zhx_A UDG, uracil-DNA glycosylase; DNA repair, UNG-UGI complex, UNG-DNA interactions, cytoplasm, DNA damage; 3.10A {Mycobacterium tuberculosis}
Probab=58.15 E-value=9.3 Score=17.81 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCCCH---------HHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-785255678887506---------899999717887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGNDF---------WRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N~F---------W~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. --+.|--|+-+.+-= -|-|..-++...+... +..-.-+.|+=|.|.+-.++
T Consensus 68 ~~~vKVVIlGQDPY~~~g~A~GLaFSv~~~~~~~PpSLrNI~Kel~~d~g~~~~~~g---dL~~Wa~QGVLLLNt~LTv~ 144 (238)
T 2zhx_A 68 FDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADLGYPLPSNG---DLTPWAQRGVLLLNRVLTVR 144 (238)
T ss_dssp STTCCEEEECCSCCSSTTTCCSSSSCCCTTCCSCCHHHHHHHHHHHHHSSCCCCSSS---CCHHHHTTTEECCCSSCCCC
T ss_pred HHHCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHCCEEEEEEEEEEC
T ss_conf 879279987337999988548567532899978988999999999985399999998---86889858889985145631
Q ss_pred CCCCCH-HHH-HHHHHHHHHHHH-HHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 575344-443-013554489999-85698517987180578887641246845887079874543
Q T0545 81 REGSQD-SKI-GDEEINDFSGLK-EMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANR 142 (158)
Q Consensus 81 R~gs~D-~~i-~~~~~~d~~~l~-~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana 142 (158)
...+.+ ..+ .+...+.+-+.+ ++...+ ..++=|+.|.+...........+..-+-+||+.|
T Consensus 145 ~g~~~SH~~~gWe~fT~~vI~~l~~~~~~~-VfiLWG~~Aq~~~~~I~~~~h~il~s~HPSPlSa 208 (238)
T 2zhx_A 145 PSNPASHRGKGWEAVTECAIRALAARAAPL-VAILWGRDASTLKPMLAAGNCVAIESPHPSPLSA 208 (238)
T ss_dssp TTCTTTTTTSSHHHHHHHHHHHHHHSSSCE-EEEEESHHHHTTTTTSCSSSEEEEEECCSSTTTG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-EEEEECHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 898776524785999999999997268882-8999785888776135877887997889995012
No 15
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli B} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A
Probab=56.81 E-value=9.8 Score=17.68 Aligned_cols=128 Identities=10% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCCCCEEEEECCCCHHHH-HCCCCCCCCCCCHH-HHH--------HHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 788847987148867778-52556788875068-999--------99717887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDESI-RKQQYYGNPGNDFW-RLV--------GHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~S~-~~g~yYa~p~N~FW-~il--------~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|+|--|=...- +.|-.|+-+.+.=+ +-| .++.+...+.. ........+|+=|.|++-.++
T Consensus 53 ~~~vKVVIlGQDPY~~~~~A~GLaFsv~~~~k~PpSL~NI~kel~~d~~~~~~~~~---g~L~~Wa~QGVLLLNt~LTv~ 129 (229)
T 4eug_A 53 LGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNH---GYLESWARQGVLLLNTVLTVR 129 (229)
T ss_dssp GGGCCEEEEESSCCCSTTTCSSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSC---CCCHHHHTTTEEEEESSCCEE
T ss_pred HHHEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCHHHHHCCEEEEECEEEEE
T ss_conf 75828999724799988877876532589987980799999999986389877899---863258749889972458887
Q ss_pred CCCCCH--HHH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 575344--443-01355448-9999856985179871805788876412468458870798745432
Q T0545 81 REGSQD--SKI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs~D--~~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
.|..+ ..+ .+...+.+ +.|.+....+ ...+=|+.|.+...........+..-+=+||+.|+
T Consensus 130 -~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v-VfiLWG~~A~~~~~~i~~~~~~Il~~~HPSPlsa~ 194 (229)
T 4eug_A 130 -AGQAHSHASLGWETFTDKVISLINQHREGV-VFLLWGSHAQKKGAIIDKQRHHVLKAPQPSPLSAH 194 (229)
T ss_dssp -TTBTTTTTTSSHHHHHHHHHHHHHHHCSSC-EEEEESHHHHHHTTTSCTTTSEEEEECCSSTTTGG
T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf -777899788777999999999998267874-99997768898873079878659982799811037
No 16
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=41.80 E-value=17 Score=16.30 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=68.9
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCC-C-------HHHHHHH-HHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-7852556788875-0-------6899999-717887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGN-D-------FWRLVGH-AIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N-~-------FW~il~~-~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. --+.|-.|+-+.+ . .-|-|.. ..+.+.+. .-.......+|+=|+|.+-.++
T Consensus 77 ~~~vKVVIlGQDPY~~~~~A~GLaFsv~~~~~~ppSLrNI~kel~~d~~~~~~~~---~g~L~~Wa~QGVLLLN~~LTv~ 153 (244)
T 1udg_A 77 PDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSG---HGCLEKWARDGVLLLNTTLTVK 153 (244)
T ss_dssp GGGCCEEEEECSCCCSTTTCSSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCS---CCCCHHHHHTTEEEEESSCCEE
T ss_pred HHHCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHCCEEEEEEEEEEE
T ss_conf 5334699996158876640333331367641323778999999975347777777---8877778527778775048887
Q ss_pred CCCCCHH--HH-HHHHHHH-HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 5753444--43-0135544-89999856985179871805788876412468458870798745432
Q T0545 81 REGSQDS--KI-GDEEIND-FSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs~D~--~i-~~~~~~d-~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
. |...+ .+ .+...+. ++.|..+.+.+. .++=|+.|.+... .......+..-+-+||+.++
T Consensus 154 ~-g~~~SH~~~GWe~fT~~vi~~l~~~~~~vV-fiLWG~~Aq~~~~-~~~~~h~Il~s~HPSPls~~ 217 (244)
T 1udg_A 154 R-GAAASHSRIGWDRFVGGVIRRLAARRPGLV-FMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSKV 217 (244)
T ss_dssp T-TBTTTTTTSSHHHHHHHHHHHHHHHCSSCE-EEEESHHHHHHCC-CCTTTSEEEEECCSSTTSSS
T ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHCCCCCEE-EEEEHHHHHHHHC-CCCCCCEEEEECCCCHHHCC
T ss_conf 2-545776421099999999999972889869-9973466765620-38999869987899845436
No 17
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=21.67 E-value=14 Score=16.84 Aligned_cols=47 Identities=9% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCCCCCCCC---CCCEEEEECCCCHH---HH--HCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 677863278---88479871488677---78--5255678887506899999717
Q T0545 4 RGFPAVLDE---NTEILILGSLPSDE---SI--RKQQYYGNPGNDFWRLVGHAIG 50 (158)
Q Consensus 4 ~~~~p~~~~---~~~vLilGs~Pg~~---S~--~~g~yYa~p~N~FW~il~~~~~ 50 (158)
.||-|+|-- .-+||++|-|=-.. ++ ...+||..-||+.|.==..++.
T Consensus 21 ~GLiPaIvQd~~tg~VLMlaymN~eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~ 75 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGH 75 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSC
T ss_pred CCCEEEEEEECCCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCC
T ss_conf 9837799998799989999977999999655149489993244323210130487
Done!