Query T0545 MvR76 , , 158 residues
Match_columns 158
No_of_seqs 106 out of 499
Neff 6.5
Searched_HMMs 15564
Date Fri May 21 18:07:01 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0545.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0545.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1muga_ c.18.1.2 (A:) G:T/U mi 100.0 7E-39 4.5E-43 236.8 13.8 148 6-157 2-161 (165)
2 d1vk2a_ c.18.1.2 (A:) Thermoph 98.1 5.3E-05 3.4E-09 46.4 11.6 134 6-156 31-182 (191)
3 d1oe4a_ c.18.1.3 (A:) Single-s 97.5 0.00086 5.5E-08 39.6 10.4 121 10-142 49-221 (245)
4 d1ui0a_ c.18.1.2 (A:) Thermoph 97.4 0.0019 1.2E-07 37.6 10.8 126 11-156 30-178 (192)
5 d2hxma1 c.18.1.1 (A:82-304) Ur 92.1 0.39 2.5E-05 24.6 8.0 128 11-143 53-194 (223)
6 d3euga_ c.18.1.1 (A:) Uracil-D 88.5 0.83 5.3E-05 22.8 10.0 128 11-143 49-190 (225)
7 d2hxma1 c.18.1.1 (A:82-304) Ur 80.7 1.9 0.00012 20.8 8.9 128 11-143 53-194 (223)
8 d2j8xa1 c.18.1.1 (A:26-255) Ur 71.1 3.6 0.00023 19.2 9.7 128 11-142 55-194 (230)
9 d1laue_ c.18.1.1 (E:) Uracil-D 56.4 6.9 0.00044 17.6 7.7 128 11-143 61-201 (228)
10 d1zpsa1 b.168.1.1 (A:8-131) Ph 38.2 5 0.00032 18.4 0.8 48 4-51 14-69 (124)
No 1
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=7e-39 Score=236.85 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=126.3
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC-
Q ss_conf 7863278884798714886777852556788875068999997178876788478899999779602231100235753-
Q T0545 6 FPAVLDENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGS- 84 (158)
Q Consensus 6 ~~p~~~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs- 84 (158)
++|+++++++|||||+|||.+|.++|+||+||+|+||++|+++++++.... +++..+|..+|||+||++++|+|.++
T Consensus 2 ~~d~l~p~~~vlivG~~PG~~s~~~g~~f~~p~n~fw~~l~~~g~~~~~~~--~~~~~~l~~~~i~~~d~~~~~~~~~~~ 79 (165)
T d1muga_ 2 VEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLK--PQEAQHLLDYRCGVTKLVDRPTVQANE 79 (165)
T ss_dssp CCCBCCTTCSEEEEESSCCHHHHHHSSTTCSTTCCHHHHHHHTTSSSSCCC--GGGGGGGGGGTEEEEESCCCCCSSGGG
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC--HHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 887669999889980798977885599826848899999999737876677--767644310446884376677888899
Q ss_pred -CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCC----------CCCEEEEECCCCHHHHCCCHHHHHHHH
Q ss_conf -444430135544899998569851798718057888764124----------684588707987454326777999999
Q T0545 85 -QDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLRG----------MGYETKVLPSSSGANRRFSKNRESEWE 153 (158)
Q Consensus 85 -~D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~----------~~~~~~vlPStSpana~~~~ek~~~W~ 153 (158)
++.++++..+++.+.+....|+ .|+|+|++|++.+.+... .++.++|||||||+|+...++|+++|+
T Consensus 80 ~s~~Ei~~~~~~l~~~i~~~~Pk--ii~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspSp~~~~~~~~~~~~w~ 157 (165)
T d1muga_ 80 VSKQELHAGGRKLIEKIEDYQPQ--ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYR 157 (165)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCS--EEEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSCCCHHHHHHHHH
T ss_pred CCHHHHHHCCCCHHHHHHHHCCC--EEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHHH
T ss_conf 99999986550089999984994--8998287999998467764445423224996789970798678589999999999
Q ss_pred HHHC
Q ss_conf 9960
Q T0545 154 AVFR 157 (158)
Q Consensus 154 ~~~~ 157 (158)
++.+
T Consensus 158 el~~ 161 (165)
T d1muga_ 158 ELDQ 161 (165)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 2
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=98.05 E-value=5.3e-05 Score=46.42 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=85.5
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCC-
Q ss_conf 78632788847987148867778525567888-7506899999717887678847889999977960223110023575-
Q T0545 6 FPAVLDENTEILILGSLPSDESIRKQQYYGNP-GNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREG- 83 (158)
Q Consensus 6 ~~p~~~~~~~vLilGs~Pg~~S~~~g~yYa~p-~N~FW~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~g- 83 (158)
....-+.+++|+|+|-+||...-.+|..|..+ +..|+++|..++... ..+-+|+++..+...+
T Consensus 31 V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~aG~~L~~~l~~~gl~~---------------~~~~it~~~kc~pp~~~ 95 (191)
T d1vk2a_ 31 VVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRR---------------EDVYICNVVKCRPPNNR 95 (191)
T ss_dssp CCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCG---------------GGSEEEESCSSCCGGGC
T ss_pred CCCCCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC---------------CCEEEEEEECCCCCCCC
T ss_conf 579999986789996133566776476541778999999988632020---------------47279733313476433
Q ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH--------HCC------CCCEEEEECCCCHHHHCCCH-H
Q ss_conf -3444430135544899998569851798718057888764--------124------68458870798745432677-7
Q T0545 84 -SQDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPL--------LRG------MGYETKVLPSSSGANRRFSK-N 147 (158)
Q Consensus 84 -s~D~~i~~~~~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~--------~~~------~~~~~~vlPStSpana~~~~-e 147 (158)
..+.++..-.+-....|..-.|+ .|++.|..|.+..-. ..+ .+..++.++.+|.++...+. .
T Consensus 96 ~p~~~ei~~C~p~L~~ei~~i~Pk--iii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llr~p~~~~ 173 (191)
T d1vk2a_ 96 TPTPEEQAACGHFLLAQIEIINPD--VIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNRSNEL 173 (191)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCS--EEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCCCHHH
T ss_conf 455589999999888887652030--134326089999860355653323671588689987999849889865977888
Q ss_pred HHHHHHHHH
Q ss_conf 999999996
Q T0545 148 RESEWEAVF 156 (158)
Q Consensus 148 k~~~W~~~~ 156 (158)
|...|..+.
T Consensus 174 k~~~~~Dl~ 182 (191)
T d1vk2a_ 174 RRIVLEDIE 182 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 3
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=97.49 E-value=0.00086 Score=39.60 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCCCHH-HHHCCCCCCC-------------------------------C-----CCCHHHHHHHHHCCC
Q ss_conf 27888479871488677-7852556788-------------------------------8-----750689999971788
Q T0545 10 LDENTEILILGSLPSDE-SIRKQQYYGN-------------------------------P-----GNDFWRLVGHAIGEN 52 (158)
Q Consensus 10 ~~~~~~vLilGs~Pg~~-S~~~g~yYa~-------------------------------p-----~N~FW~il~~~~~~~ 52 (158)
-+...++||||.|||.. .+++|=-++. + +-++|.++.+.++.+
T Consensus 49 ~~~~~~~l~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~I~~~v~~P~~~HPKRpi~Gl~~~r~EvSg~rlW~l~~~~~g~p 128 (245)
T d1oe4a_ 49 CKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQP 128 (245)
T ss_dssp CSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 38999789983289877676528686877998877547775578853377776556566654017989999999982998
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCCCC----CCCCCCCHHHHHHHHH--------HHHHHHHHHCCCCCEEEECCCHHHHH
Q ss_conf 76788478899999779602231100----2357534444301355--------44899998569851798718057888
Q T0545 53 LQDMAYEKKLKTLKHNRIGLWDVFKA----GSREGSQDSKIGDEEI--------NDFSGLKEMVPKLRLICFNGRKAGEY 120 (158)
Q Consensus 53 ~~~~~~e~~~~~L~~~gIgl~Dvv~~----~~R~gs~D~~i~~~~~--------~d~~~l~~~~p~i~~i~f~G~~A~~~ 120 (158)
.. |. ..+=+||+|-= .+-++-.-..+...+- .-+.++++.. +++.|+-.|+-|.+.
T Consensus 129 e~---------ff--~~~fv~N~CPL~f~~e~GkN~TP~~l~~~~~~~l~~~Cd~~L~~~v~~L-~p~~VIgVG~~Ae~r 196 (245)
T d1oe4a_ 129 ET---------FF--KHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVL-GVKLVIGVGRFSEQR 196 (245)
T ss_dssp HH---------HH--TTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCSEEEEESHHHHHH
T ss_pred HH---------HH--HHHHEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHH
T ss_conf 99---------87--6550364178664588899898211578899999999999999999754-960999837899999
Q ss_pred HHH---HCCCCCEEEEECCCCHHHH
Q ss_conf 764---1246845887079874543
Q T0545 121 EPL---LRGMGYETKVLPSSSGANR 142 (158)
Q Consensus 121 ~~~---~~~~~~~~~vlPStSpana 142 (158)
.+. ..+.++.+..+|-+|||+.
T Consensus 197 a~~al~~~g~~v~v~~i~HPSPasp 221 (245)
T d1oe4a_ 197 ARKALMAEGIDVTVKGIMHPSPRNP 221 (245)
T ss_dssp HHHHHHHTTCSCEEEEECCCCTTCG
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCH
T ss_conf 9998623699845864789999880
No 4
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]}
Probab=97.35 E-value=0.0019 Score=37.60 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC---CH
Q ss_conf 7888479871488677785255678887506-8999997178876788478899999779602231100235753---44
Q T0545 11 DENTEILILGSLPSDESIRKQQYYGNPGNDF-WRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGS---QD 86 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~F-W~il~~~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R~gs---~D 86 (158)
+.+++|+|+|-+||...-+.|..|..+...+ -++|..++... + .+-+|++|. |...+. ..
T Consensus 30 ~~~a~imiVgeaPg~~e~~~g~pf~G~aG~lL~~~l~~~gl~~------~---------~vyitn~vk-c~p~~~~~~~~ 93 (192)
T d1ui0a_ 30 NPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPR------E---------EVYITNIVK-CRPPQNRAPLP 93 (192)
T ss_dssp CTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCG------G---------GSEEEESCS-SCCGGGCCCCH
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH------H---------HEEEEEEEE-ECCCCCCCCCC
T ss_conf 9998899996324555664530100226889999999718888------8---------968860265-71344556781
Q ss_pred HHHHHHH-HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHC------------CCCCEEEEECCCCHH--HHCCC----HH
Q ss_conf 4430135-54489999856985179871805788876412------------468458870798745--43267----77
Q T0545 87 SKIGDEE-INDFSGLKEMVPKLRLICFNGRKAGEYEPLLR------------GMGYETKVLPSSSGA--NRRFS----KN 147 (158)
Q Consensus 87 ~~i~~~~-~~d~~~l~~~~p~i~~i~f~G~~A~~~~~~~~------------~~~~~~~vlPStSpa--na~~~----~e 147 (158)
.+++.-. +-....+..-.| +.|++.|+.|++...... ..++. ++|+-.|+ ...-+ ..
T Consensus 94 ~e~~~C~~~~L~~ei~li~P--~iii~lG~~a~~~~l~~~~~~~~~rG~~~~~~~~~--~~~t~HPs~llrnp~~~~~~~ 169 (192)
T d1ui0a_ 94 DEAKICTDKWLLKQIELIAP--QIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIK--VFPMFHPAYLLRNPSRAPGSP 169 (192)
T ss_dssp HHHHHHHHHTHHHHHHHHCC--SEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEE--ECCBCCHHHHHHSCCCSTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCC--CEEEECCCEEEEEECCCCCCCHHCCCCEEECCCCE--EEEECCCHHHHHCCCCCCCHH
T ss_conf 79999999999999974306--59995131012332011353010058258718977--999809478766914223045
Q ss_pred HHHHHHHHH
Q ss_conf 999999996
Q T0545 148 RESEWEAVF 156 (158)
Q Consensus 148 k~~~W~~~~ 156 (158)
|...|..+.
T Consensus 170 K~~~w~DL~ 178 (192)
T d1ui0a_ 170 KHLTWLDIQ 178 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 789999999
No 5
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} SCOP: d2sspe_ d4skne_ d1okba_ d1lqja_ d1lqjb_ d1lqjc_ d1lqmg_ d1lqma_ d1uuga_ d1lqga_ d1lqgb_ d1lqmc_ d1uugc_ d1euia_ d1euib_ d1euga_ d2uuga_ d2uugb_ d4euga_ d1flza_ d3euga_ d1udha_ d1udie_
Probab=92.10 E-value=0.39 Score=24.65 Aligned_cols=128 Identities=11% Similarity=-0.003 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCC-CHHH-------HHHHHH-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-7852556788875-0689-------999971-7887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGN-DFWR-------LVGHAI-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N-~FW~-------il~~~~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. .-+.|--|+-+.+ ..=+ -|..-. +...+.. -...-.-++|+=|+|.+-.++
T Consensus 53 ~~~vkVVIlGQDPY~~~g~A~GLaFsv~~~~~~ppSLrNI~kel~~d~~~~~~~~~---g~L~~Wa~QGVLLLN~~LTv~ 129 (223)
T d2hxma1 53 IKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGH---GDLSGWAKQGVLLLNAVLTVR 129 (223)
T ss_dssp GGGCCEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSS---CCTHHHHHTTEEEEESSCCEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCEEEEECEEEEC
T ss_conf 11124888713655772111232445788888877899999999976112457887---765430117726762306651
Q ss_pred CCCCCHHH--H-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 57534444--3-01355448-9999856985179871805788876412468458870798745432
Q T0545 81 REGSQDSK--I-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs~D~~--i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
.|...+. + .+...+.+ +.|..+.+.+ ..++=|+.|.+...........+...+-+||+.++
T Consensus 130 -~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v-vfiLWG~~A~~~~~~i~~~~h~il~~~HPSPlS~~ 194 (223)
T d2hxma1 130 -AHQANSHKERGWEQFTDAVVSWLNQNSNGL-VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY 194 (223)
T ss_dssp -TTBTTTTTTSSHHHHHHHHHHHHHHHCCSC-EEEEESHHHHHHTTTSCTTTSEEEEECCCSTTTGG
T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECHHHHHHHHCCCCCCCEEEECCCCCCHHCC
T ss_conf -666564211037899999999998438998-99975735687754068988778873788811105
No 6
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=88.48 E-value=0.83 Score=22.83 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCCC--------HHHHHHHHH-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-78525567888750--------689999971-7887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGND--------FWRLVGHAI-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N~--------FW~il~~~~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. --+.|-.|+-+.+. ..+-|..-. +...+.. .........|+=|.|.+-.++
T Consensus 49 ~~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~PpSL~NI~kel~~d~~~~~~~~~---g~L~~Wa~QGVLLLN~~LTv~ 125 (225)
T d3euga_ 49 LGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNH---GYLESWARQGVLLLNTVLTVR 125 (225)
T ss_dssp GGGCCEEEEESSCCCSTTTCSSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSC---CCCHHHHTTTEEEEESSCCEE
T ss_pred HHHCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHCCEEEEEEEEEEE
T ss_conf 75756999965788755511364133158988883499999999986389878999---852035417657774359998
Q ss_pred CCCC--CHHHH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 5753--44443-01355448-9999856985179871805788876412468458870798745432
Q T0545 81 REGS--QDSKI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs--~D~~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
. |. +.+.+ .+...+.+ +.|....+.+ ..++=|+.|.+...........+..-+-+||+.|+
T Consensus 126 ~-g~~~SH~~~GWe~ft~~ii~~l~~~~~~v-vfiLwG~~A~~~~~~i~~~~h~il~s~HPSPlsa~ 190 (225)
T d3euga_ 126 A-GQAHSHASLGWETFTDKVISLINQHREGV-VFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAH 190 (225)
T ss_dssp T-TBTTTTTTSSHHHHHHHHHHHHHHHCSSC-EEEEESHHHHHHTTTSCTTTSEEEEECCSSTTTGG
T ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEEEEHHHHHHHHHCCCCCEEEEECCCCHHHCC
T ss_conf 5-75666211158999999999997367785-99986130667776515678769982799822148
No 7
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.73 E-value=1.9 Score=20.76 Aligned_cols=128 Identities=10% Similarity=0.002 Sum_probs=74.8
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCCC-----HHHHHHHH---H-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-78525567888750-----68999997---1-7887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGND-----FWRLVGHA---I-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N~-----FW~il~~~---~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|+|--|=.. --+.|-.|+-+.+. .--|+-++ + +...+ .........++|+=|.|++-.++
T Consensus 53 ~~~vKVVIlGQDPY~~~~~A~GlaFSv~~~~~~ppSL~NI~kel~~d~~~~~~~---~~g~L~~Wa~QGVLLLNt~LTv~ 129 (223)
T d2hxma1 53 IKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHP---GHGDLSGWAKQGVLLLNAVLTVR 129 (223)
T ss_dssp GGGCCEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHCTTCCCC---SSCCTHHHHHTTEEEEESSCCEE
T ss_pred HHHCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC---CCCCHHHHHCCCEEEEECCEEEE
T ss_conf 757469999526876678510033103688556841999999998763568788---86613544207768886516787
Q ss_pred CCCCCH--HHH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 575344--443-01355448-9999856985179871805788876412468458870798745432
Q T0545 81 REGSQD--SKI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs~D--~~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
. |... +.+ .+...+.+ +.|......+ ..++=|+.|.+...........+..-+=+||+.++
T Consensus 130 ~-g~~~SH~~~gW~~ft~~ii~~l~~~~~~v-VfiLWG~~A~~~~~~i~~~~h~il~~~HPSPls~~ 194 (223)
T d2hxma1 130 A-HQANSHKERGWEQFTDAVVSWLNQNSNGL-VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY 194 (223)
T ss_dssp T-TBTTTTTTSSHHHHHHHHHHHHHHHCCSC-EEEEESHHHHHHTTTSCTTTSEEEEECCCSTTTGG
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEEEEHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 5-40247402689999999999986546783-99873232789988625689879982799721107
No 8
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=71.05 E-value=3.6 Score=19.24 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCC--------HHHHHHH-HHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 788847987148867778525567888750--------6899999-7178876788478899999779602231100235
Q T0545 11 DENTEILILGSLPSDESIRKQQYYGNPGND--------FWRLVGH-AIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSR 81 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~S~~~g~yYa~p~N~--------FW~il~~-~~~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~R 81 (158)
.++.||+|||--|=...-+.|-.|+-+.+. .-+-|.. ..+...+. .........+|+-|.|.+-.++.
T Consensus 55 ~~~vKVVIlGQDPY~~~~A~GLaFSv~~~~~~PpSL~NI~kel~~d~~~~~~~~---~g~L~~Wa~QGVLLLN~~LTv~~ 131 (230)
T d2j8xa1 55 PSDIKVVILGQDPYHGGQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPD---HGCLDAWASQGVLLLNTILTVQK 131 (230)
T ss_dssp GGGCCEEEEECSCCSSSCCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCS---SCCCHHHHTTTEEEEESSCCEET
T ss_pred HHHEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCC---CCCHHHHHHCCEEEEEEEEEEEC
T ss_conf 768379998536787875214432046789789429999999986457888777---89868996388776630367747
Q ss_pred CCC-CHHHH-HHHHHHHH-HHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 753-44443-01355448-999985698517987180578887641246845887079874543
Q T0545 82 EGS-QDSKI-GDEEINDF-SGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANR 142 (158)
Q Consensus 82 ~gs-~D~~i-~~~~~~d~-~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana 142 (158)
..+ +-+.+ .+...+.+ ..|.++.+.+ ..++=|+.|.+...........+...+=+||+++
T Consensus 132 g~~~SH~~~gWe~ft~~~i~~l~~~~~~v-VfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPls~ 194 (230)
T d2j8xa1 132 GKPGSHADIGWAWFTDHVISLLSERLKAC-VFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQ 194 (230)
T ss_dssp TBTTTTTTSSHHHHHHHHHHHHHHHCSSC-EEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 99998333474889999999997277887-9984014466666531577876996789994224
No 9
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=56.45 E-value=6.9 Score=17.64 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=70.0
Q ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCCC-HHHHHH----HH---H-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 7888479871488677-78525567888750-689999----97---1-7887678847889999977960223110023
Q T0545 11 DENTEILILGSLPSDE-SIRKQQYYGNPGND-FWRLVG----HA---I-GENLQDMAYEKKLKTLKHNRIGLWDVFKAGS 80 (158)
Q Consensus 11 ~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N~-FW~il~----~~---~-~~~~~~~~~e~~~~~L~~~gIgl~Dvv~~~~ 80 (158)
.++.||+|||--|=.. --+.|-.|+-+.+. -=+-|- ++ . ....+ .........+.|+=|.|.+-.++
T Consensus 61 ~~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~ppSLrNI~kel~~d~~~~~~~---~~g~L~~Wa~QGVLLLNt~LTv~ 137 (228)
T d1laue_ 61 PDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMS---GHGCLEKWARDGVLLLNTTLTVK 137 (228)
T ss_dssp GGGCCEEEEECSCCCSTTTCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCC---SCCCCHHHHHTTEEEEESSCCEE
T ss_pred HHHCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHCCCCEEEEEEEEEEE
T ss_conf 636359999614887664131131235888465067899999988644777678---76654343328789996027887
Q ss_pred CCCC-CHHHH-HHHHHHH-HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHC
Q ss_conf 5753-44443-0135544-89999856985179871805788876412468458870798745432
Q T0545 81 REGS-QDSKI-GDEEIND-FSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRR 143 (158)
Q Consensus 81 R~gs-~D~~i-~~~~~~d-~~~l~~~~p~i~~i~f~G~~A~~~~~~~~~~~~~~~vlPStSpana~ 143 (158)
...+ +-+.+ .+..... ++.|..+.+.+ ..++=|+.|.+... .......+..-+=+||+.|+
T Consensus 138 ~g~~~SH~~~gWe~ft~~ii~~l~~~~~~v-VfiLWG~~Aq~~~~-~~~~~h~il~~~HPSPlsa~ 201 (228)
T d1laue_ 138 RGAAASHSRIGWDRFVGGVIRRLAARRPGL-VFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSKV 201 (228)
T ss_dssp TTBTTTTTTSSHHHHHHHHHHHHHHHCTTC-EEEEESHHHHHHCC-CCTTTSEEEEECCCSTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-EEEEEHHHHHHHHH-CCCCCCEEEEECCCCHHHCC
T ss_conf 797567655439999999999997588882-89973115777754-47999859997899824316
No 10
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.19 E-value=5 Score=18.41 Aligned_cols=48 Identities=10% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCCCCCCC---CCCCEEEEECCCCHH---HH--HCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 67786327---888479871488677---78--52556788875068999997178
Q T0545 4 RGFPAVLD---ENTEILILGSLPSDE---SI--RKQQYYGNPGNDFWRLVGHAIGE 51 (158)
Q Consensus 4 ~~~~p~~~---~~~~vLilGs~Pg~~---S~--~~g~yYa~p~N~FW~il~~~~~~ 51 (158)
.||-|+|- ..-.||++|-|=-.. ++ ...+||...||+.|.==..++..
T Consensus 14 ~gLiP~ivqd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~ 69 (124)
T d1zpsa1 14 EDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHV 69 (124)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCC
T ss_pred CCCEEEEEEECCCCCEEEEEECCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCE
T ss_conf 98056999987899899999769999999874492899981121221102403786
Done!