Query T0546 BvR159, , 134 residues
Match_columns 134
No_of_seqs 67 out of 69
Neff 3.4
Searched_HMMs 22458
Date Fri May 21 18:04:39 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0546.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0546.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w8x_N Protein P31, protein C, 86.5 0.14 6.4E-06 29.8 0.8 40 4-43 79-118 (126)
2 2hdl_A Small inducible cytokin 59.0 3.2 0.00014 21.5 1.6 21 110-131 58-78 (78)
3 1k2h_A S100A1, S-100 protein, 47.9 15 0.00068 17.3 4.2 64 61-131 10-73 (93)
4 2rgi_A Protein S100-A2, protei 33.3 26 0.0012 15.9 5.4 64 61-131 12-75 (98)
5 1kso_A S-100E protein, S100 ca 31.5 28 0.0012 15.7 5.4 64 61-131 11-74 (101)
6 1cb1_A Calbindin D9K; calcium- 30.5 22 0.00099 16.3 2.2 61 61-131 8-68 (78)
7 3eoz_A Putative phosphoglycera 28.8 30 0.0013 15.5 2.7 37 87-123 53-89 (214)
8 2qve_A Tyrosine aminomutase; M 28.2 32 0.0014 15.4 4.0 31 87-117 477-507 (526)
9 1gkm_A Histidine ammonia-lyase 28.2 32 0.0014 15.4 3.5 41 88-131 462-502 (509)
10 1b43_A Protein (FEN-1); nuclea 27.5 33 0.0014 15.3 4.5 75 54-130 264-338 (340)
11 1a4p_A S100A10; S100 family, E 27.4 33 0.0015 15.3 3.1 61 61-131 10-70 (96)
12 2b3o_A Tyrosine-protein phosph 24.6 11 0.0005 18.1 -0.1 66 43-109 225-290 (532)
13 3b7o_A Tyrosine-protein phosph 24.1 9.2 0.00041 18.7 -0.7 13 94-107 66-78 (316)
14 1juo_A Sorcin; calcium-binding 23.9 38 0.0017 14.9 4.8 67 55-131 28-94 (198)
15 3i9v_6 NADH-quinone oxidoreduc 23.5 23 0.001 16.2 1.3 28 90-117 3-30 (181)
16 2shp_A SHP-2, SYP, SHPTP-2; ty 21.1 2.8 0.00012 21.9 -3.8 28 3-30 123-151 (525)
17 1mij_A Protein prospero; homeo 20.5 45 0.002 14.5 2.5 69 45-116 71-139 (152)
No 1
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=86.47 E-value=0.14 Score=29.76 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=35.3
Q ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 4211328983267621588636887411686067620654
Q T0546 4 TILSIAGKPGLYKLISQGKNMLIVETVDAAKKRVPAYAHD 43 (134)
Q Consensus 4 ~IlsIsGKPGLykLvsq~k~g~IvESLd~~kkr~~~~~~~ 43 (134)
.|-+-+||-|-|-|++++|.-||+..+.++||.+|.+--+
T Consensus 79 RIt~~AG~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlN 118 (126)
T 1w8x_N 79 RIKCPAGKQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLN 118 (126)
T ss_dssp CEECCCCCCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC
T ss_pred EEECCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 8874577853214660666555445506887210268980
No 2
>2hdl_A Small inducible cytokine B14; CXCL14, BRAK, chemokine; NMR {Homo sapiens}
Probab=59.01 E-value=3.2 Score=21.50 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 7898999998887368744335
Q T0546 110 DIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 110 DIKKliqWYniL~~~g~~~F~e 131 (134)
-+||+|+||++..+.+= .|||
T Consensus 58 ~vkklik~~~~~~~k~r-~~~~ 78 (78)
T 2hdl_A 58 STKRFIKWYNAWNEKRR-VYEE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHHHHHHHHHHHHHCC-CCCC
T ss_conf 99999999999876255-0459
No 3
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2jpt_A
Probab=47.95 E-value=15 Score=17.32 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|.+||.+-..+ +|....|+ .+||+..+...+|++-.++.=...++++++=... -..|-.+|+|
T Consensus 10 ~l~~~F~~y~d~-dG~~g~Is-----~~El~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~-n~DG~IdF~E 73 (93)
T 1k2h_A 10 TLINVFHAHSGK-EGDKYKLS-----KKELKDLLQTELSSFLDVQKDADAVDKIMKELDE-NGDGEVDFQE 73 (93)
T ss_dssp HHHHHHHHHHTT-SSCCSSCC-----HHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHH-CTTSCCCHHH
T ss_pred HHHHHHHHHCCC-CCCCCEEC-----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 999999998165-89989786-----9999999998622125677999999999998668-9999697999
No 4
>2rgi_A Protein S100-A2, protein S-100L; alpha helical, EF-hand, metal binding protein; 1.60A {Homo sapiens}
Probab=33.27 E-value=26 Score=15.90 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|.+||.+-..+ +|...+| |+.||+..+..-+|++-....=+..+.++++=-+. -..|-.+|.|
T Consensus 12 ~li~vF~kya~k-dGd~~tL-----sk~Elk~ll~~e~~~~~~~~~~~~~i~~~~~~lD~-n~Dg~IdF~E 75 (98)
T 2rgi_A 12 VLVTTFHKYSSQ-EGDKFKL-----SKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDE-NSDQQVDFQE 75 (98)
T ss_dssp HHHHHHHHHHTT-SSCTTCE-----EHHHHHHHHHHHSCCSCSTTSCHHHHHHHHHHHHH-TTTSEECHHH
T ss_pred HHHHHHHHHCCC-CCCCCEE-----CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 999999997455-8997808-----79999999998613014566999999999998668-9999796999
No 5
>1kso_A S-100E protein, S100 calcium-binding protein A3; S100,EF-hand,Ca2+ binding protein,Zn2+ binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.2
Probab=31.53 E-value=28 Score=15.73 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|.+||.+-..++ |....| +..||+..+...++++-....=...++++++=-+ .-..|..+|.|
T Consensus 11 ~li~~F~ky~d~d-Gd~~~L-----s~~Elk~ll~~~~~~~~~~~~~~~~v~~~~~~~D-~n~DG~IdF~E 74 (101)
T 1kso_A 11 AIVCTFQEYAGRC-GDKYKL-----CQAELKELLQKELATWTPTEFRECDYNKFMSVLD-TNKDCEVDFVE 74 (101)
T ss_dssp HHHHHHHHHHTSS-SCTTCE-----EHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHH-HTTTCEECHHH
T ss_pred HHHHHHHHHCCCC-CCCCEE-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHH
T ss_conf 9999999883768-998968-----7999999999860103566699999999999975-89999796999
No 6
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=30.46 E-value=22 Score=16.30 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|.+||..-..+ +|...+| +..||+..+...+|++..++ .+++++++=.. .-..|..+|.|
T Consensus 8 ~l~~~F~~f~~~-d~~~g~i-----s~~El~~ll~~~~~~~~~~~---~~v~~~~~~~D-~d~dG~IdF~E 68 (78)
T 1cb1_A 8 ELKSIFEKYAAK-EGDPNQL-----SKEELKQLIQAEFPSLLKGP---RTLDDLFQELD-KNGDGEVSFEE 68 (78)
T ss_dssp HHHHHHHHHHTT-SSSTTEE-----CHHHHHHHHHHHCSSCCSSC---CCSSHHHHHTC-CCSSSSEEHHH
T ss_pred HHHHHHHHHCCC-CCCCCEE-----CHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHC-CCCCCCCCHHH
T ss_conf 999999997446-8997988-----79999999998768889999---99999999983-69999796999
No 7
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural genomics consortium, SGC; 2.40A {Plasmodium falciparum 3D7}
Probab=28.81 E-value=30 Score=15.51 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7899999998588655213533478989999988873
Q T0546 87 ADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVN 123 (134)
Q Consensus 87 ~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~ 123 (134)
+..+..+|++.+.+..-++||.|+.+.-.|=-.++.+
T Consensus 53 A~~~~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~ 89 (214)
T 3eoz_A 53 ADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISK 89 (214)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 9999999997525899778997985689999999998
No 8
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A*
Probab=28.19 E-value=32 Score=15.37 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7899999998588655213533478989999
Q T0546 87 ADELHAYFAEVLPNYDRDRVHNGDIKKLISW 117 (134)
Q Consensus 87 ~~eL~~yf~eVLP~yD~dRVy~SDIKKliqW 117 (134)
...+.+.+.+++|-+|+||...-||..+.++
T Consensus 477 ~~~~~~~~R~~v~~~~~DR~l~~di~~~~~~ 507 (526)
T 2qve_A 477 AKATYEAVRRLVPTLGVDRYMADDIELVADA 507 (526)
T ss_dssp HHHHHHHHHHHSCCCCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999997588877898851999999999
No 9
>1gkm_A Histidine ammonia-lyase; histidine degradation; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A 1gkj_A 1gk3_A 1eb4_A 1gk2_A
Probab=28.19 E-value=32 Score=15.37 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89999999858865521353347898999998887368744335
Q T0546 88 DELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 88 ~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
..+.+.+.+++|-+|+||...-||..+.. +|...+++.-.|
T Consensus 462 ~~~~~~~R~~vp~~~~DR~l~~di~~~~~---~l~~g~~~~~~~ 502 (509)
T 1gkm_A 462 EKARQALRSEVAHYDRDRFFAPDIEKAVE---LLAKGSLTGLLP 502 (509)
T ss_dssp HHHHHHHHTTSCCCCSCCCCHHHHHHHHH---HHHTTTTGGGSC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHH---HHHCCCHHHHHH
T ss_conf 99999999758997788886799999999---997397888742
No 10
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=27.53 E-value=33 Score=15.30 Aligned_cols=75 Identities=9% Similarity=0.230 Sum_probs=51.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 63277755889999998762676232685558978999999985886552135334789899999888736874433
Q T0546 54 YTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFV 130 (134)
Q Consensus 54 YT~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~ 130 (134)
|..-.+.|...+-+.....+.-....+.+...+.+.|+.|+.+ --+|+++||.. -++|+..=++--.+..+.+|-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~fl~~-e~~f~~~~v~~-~~~~l~k~~~~~~q~~l~~f~ 338 (340)
T 1b43_A 264 FQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDPDEEGILKFLCD-EHDFSEERVKN-GLERLKKAIKSGKQSTLESWF 338 (340)
T ss_dssp TGGGCSSCHHHHHHHHHSCCCCCCCCCCCCCCCHHHHHHHHTT-TTCCCHHHHHH-HHHHHHHHHHHTTGGGCCSSC
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCHHHHHH-HHHHHHHHHCCCCCCCHHHHC
T ss_conf 8750101589999984699878766663699998999999998-66999999999-999999775258767878752
No 11
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=27.44 E-value=33 Score=15.29 Aligned_cols=61 Identities=10% Similarity=0.225 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|..+|.+.... +| .-+..||+..+..-.|++-.+.+=...++++++..+.= ..|-.+|+|
T Consensus 10 ~l~~~F~~yd~d-~G--------~is~~El~~ll~~~~~~~~~~~~~~~~~~~~~~~lD~d-~DG~I~F~E 70 (96)
T 1a4p_A 10 TMMFTFHKFAGD-KG--------YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC-RDGKVGFQS 70 (96)
T ss_dssp HHHHHHHHHHGG-GC--------SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTT-SSSCBCHHH
T ss_pred HHHHHHHHHCCC-CC--------EECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCHHH
T ss_conf 999999988599-99--------68599999999986331146779999999999998189-999797999
No 12
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Probab=24.57 E-value=11 Score=18.12 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 4402302246763277755889999998762676232685558978999999985886552135334
Q T0546 43 DKVISLADIAMYTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNG 109 (134)
Q Consensus 43 ~~Vs~L~dIaiYT~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~S 109 (134)
+++.-|..++.+..-.---+++-|+.+...+....-+........+.-+.=+..|+| ||.-||.-+
T Consensus 225 ~~~~~l~~~~~~~~i~k~GF~~ef~~l~~~~~~~~~~~~~~~~~~N~~KNRy~~i~p-~D~tRV~L~ 290 (532)
T 2b3o_A 225 NRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILP-FDHSRVILQ 290 (532)
T ss_dssp CC-----------------CHHHHHHHHTTTTTTCCCCCGGGSTTGGGGCSSTTCCC-CTTTBCCCS
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-CCCCEEECC
T ss_conf 899875321334443433560057413545366786720046778644589999788-757679834
No 13
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11, tyrosine phosphatase, structural genomics, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 3jrl_A*
Probab=24.06 E-value=9.2 Score=18.66 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=5.3
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 99858865521353
Q T0546 94 FAEVLPNYDRDRVH 107 (134)
Q Consensus 94 f~eVLP~yD~dRVy 107 (134)
+..|+| ||.-||.
T Consensus 66 y~~i~p-~D~sRV~ 78 (316)
T 3b7o_A 66 YKNILP-FDHTRVV 78 (316)
T ss_dssp STTCCC-CTTTEEE
T ss_pred CCCCCC-CCCCEEE
T ss_conf 999788-7467787
No 14
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=23.94 E-value=38 Score=14.89 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=40.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32777558899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 55 TDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 55 T~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
+.+++-+|++.|.++..+ +| .| +..||+..+...-.+.+.++.-...++.+|+=+.. -.+|..+|+|
T Consensus 28 ~~~~~~~~~~~F~~~ad~-dG---~I-----~~~EL~~~L~~~g~~~~~~~fs~e~~~~li~~~D~-d~~G~i~f~E 94 (198)
T 1juo_A 28 PGQTQDPLYGYFAAVAGQ-DG---QI-----DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR-DMSGTMGFNE 94 (198)
T ss_dssp TTCCCCTTHHHHHHHHTT-TT---EE-----CHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCT-TCSSCEEHHH
T ss_pred CCCCCHHHHHHHHHHCCC-CC---CC-----CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEHHH
T ss_conf 987608999999994899-99---69-----89999999998288877777899999999998588-9998180999
No 15
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6*
Probab=23.51 E-value=23 Score=16.18 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=13.0
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999998588655213533478989999
Q T0546 90 LHAYFAEVLPNYDRDRVHNGDIKKLISW 117 (134)
Q Consensus 90 L~~yf~eVLP~yD~dRVy~SDIKKliqW 117 (134)
|.+.|.+.+++.+++-+..+-+.+++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~t~~~~~~~w 30 (181)
T 3i9v_6 3 LKDLFERDVQELEREGILFTTLEKLVAW 30 (181)
T ss_dssp ------------CTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCEEEEEHHHHHHH
T ss_conf 3137788999876478377469999889
No 16
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 PDB: 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=21.10 E-value=2.8 Score=21.87 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHHHHCCCCCEEEEECC-CCCEEEEEEE
Q ss_conf 042113289832676215-8863688741
Q T0546 3 KTILSIAGKPGLYKLISQ-GKNMLIVETV 30 (134)
Q Consensus 3 ~~IlsIsGKPGLykLvsq-~k~g~IvESL 30 (134)
+++|.-.|++|-|=+-.. +..|--|=|+
T Consensus 123 e~lL~~~~~~G~FLVR~s~~~~g~y~Ls~ 151 (525)
T 2shp_A 123 EKLLTEKGKHGSFLVRESQSHPGDFVLSV 151 (525)
T ss_dssp HHHHHHTCCTTEEEEEECSSSTTCEEEEE
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCEEEEE
T ss_conf 99996179998688554789999789999
No 17
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=20.47 E-value=45 Score=14.46 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=46.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 023022467632777558899999987626762326855589789999999858865521353347898999
Q T0546 45 VISLADIAMYTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLIS 116 (134)
Q Consensus 45 Vs~L~dIaiYT~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliq 116 (134)
+..-.||.+-. |--|..||.--+.|.|.-+++-.........|++||..|.-.-|.|--.---|=|+|+
T Consensus 71 i~~~~~i~v~r---dsEl~r~LN~HYNk~N~~evP~~F~~v~~~TLrEFf~Ai~~gkD~e~sWKK~IYKvI~ 139 (152)
T 1mij_A 71 IKTPDDLLIAG---DSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIIS 139 (152)
T ss_dssp ---------------CHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHHHHHHHHTTGGGSTTTTHHHHHHHH
T ss_pred CCCHHHEEECC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 66788802253---5899999987514568775748899999999999999997388777215689999999
Done!