Query T0546 BvR159, , 134 residues
Match_columns 134
No_of_seqs 67 out of 69
Neff 3.4
Searched_HMMs 15564
Date Fri May 21 18:06:42 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0546.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0546.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b43a1 a.60.7.1 (A:220-339) F 61.7 6.3 0.0004 18.7 4.5 74 54-129 44-117 (120)
2 d1e8aa_ a.39.1.2 (A:) Calcycli 41.1 14 0.00087 16.7 5.6 51 61-117 9-59 (87)
3 d3c1va1 a.39.1.2 (A:2-94) Calc 40.1 14 0.0009 16.6 3.3 63 62-131 11-73 (93)
4 d1zfsa1 a.39.1.2 (A:1-93) Calc 31.9 19 0.0012 15.8 5.6 64 61-131 10-73 (93)
5 d1wgla_ a.5.2.4 (A:) Toll-inte 19.9 27 0.0017 14.8 1.8 24 84-107 6-29 (59)
6 d1mija_ a.4.1.1 (A:) Homeo-pro 18.0 35 0.0023 14.1 2.5 69 45-116 71-139 (152)
7 d3cr5x1 a.39.1.2 (X:0-89) Calc 17.2 37 0.0024 14.0 5.8 64 61-131 10-73 (90)
8 d1ksoa_ a.39.1.2 (A:) Calcycli 16.6 38 0.0024 13.9 5.2 63 62-131 11-73 (93)
9 d1sqia1 d.32.1.3 (A:8-156) 4-h 16.1 29 0.0019 14.6 1.2 22 47-72 85-106 (149)
10 d2fug13 d.15.13.1 (1:250-333) 14.1 24 0.0015 15.1 0.4 14 4-17 1-17 (84)
No 1
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=61.75 E-value=6.3 Score=18.71 Aligned_cols=74 Identities=11% Similarity=0.262 Sum_probs=52.9
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6327775588999999876267623268555897899999998588655213533478989999988873687443
Q T0546 54 YTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEF 129 (134)
Q Consensus 54 YT~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F 129 (134)
|....+.|-.++.+.....+......+.+.+.+-+.|+.|+-+ --+|+++||-.. |+|+.+=++--.+.++.+|
T Consensus 44 ~~~~~~~~~~~~~~~f~~p~v~d~~~~~~~~pd~~~l~~fL~~-e~~f~~~rv~~~-l~kl~k~~~~~~Q~~L~~f 117 (120)
T d1b43a1 44 FQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDPDEEGILKFLCD-EHDFSEERVKNG-LERLKKAIKSGKQSTLESW 117 (120)
T ss_dssp TGGGCSSCHHHHHHHHHSCCCCCCCCCCCCCCCHHHHHHHHTT-TTCCCHHHHHHH-HHHHHHHHHHTTGGGCCSS
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCHHHHHHH-HHHHHHHHCCCCCCCHHHH
T ss_conf 8860122628899986289888877867799998999999998-129899999999-9999998735877889987
No 2
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}
Probab=41.07 E-value=14 Score=16.66 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 588999999876267623268555897899999998588655213533478989999
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISW 117 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqW 117 (134)
-|.+||.+-..++ |...++ +++||+..+..-+|++=..-.=+..++++++=
T Consensus 9 ~li~vF~kya~~~-g~~~~L-----sk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~ 59 (87)
T d1e8aa_ 9 GIVNIFHQYSVRK-GHFDTL-----SKGELKQLLTKELANTIKNIKDKAVIDEIFQG 59 (87)
T ss_dssp HHHHHHHHHHTSS-SSTTEE-----CHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CCCCEE-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999874568-997868-----69999999998722124678999999999998
No 3
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}
Probab=40.13 E-value=14 Score=16.57 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 62 LSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 62 L~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
|.+||.+-..+ +|....|+ .+||+..+..-+|++-..++-...+..+++=... -..|..+|.|
T Consensus 11 l~~~F~~ya~~-dg~~~~L~-----~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~-n~DG~I~F~E 73 (93)
T d3c1va1 11 MVSTFHKYSGK-EGDKFKLN-----KSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS-NRDNEVDFQE 73 (93)
T ss_dssp HHHHHHHHHTS-SSSTTEEC-----HHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCT-TCSSSEEHHH
T ss_pred HHHHHHHHCCC-CCCCCEEC-----HHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 99999988567-89989667-----9999999997442103568999999999999827-9999797999
No 4
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}
Probab=31.89 E-value=19 Score=15.76 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-|.++|.+...+ +|....| +.+||+.-+....|.+-....-...++++++=+.. -..|..+|.|
T Consensus 10 ~l~~~F~~y~d~-dg~~G~i-----s~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~-d~dG~Idf~E 73 (93)
T d1zfsa1 10 TLINVFHAHSGK-EGDKYKL-----SKKELKDLLQTELSSFLDVQKDADAVDKIMKELDE-NGDGEVDFQE 73 (93)
T ss_dssp HHHHHHHHHGGG-SSCCSSE-----EHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTT-TCCSEECSHH
T ss_pred HHHHHHHHHCCC-CCCCCEE-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 999999998266-8998875-----19999999998652113568999999999999749-9999796999
No 5
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.89 E-value=27 Score=14.82 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 589789999999858865521353
Q T0546 84 KASADELHAYFAEVLPNYDRDRVH 107 (134)
Q Consensus 84 kas~~eL~~yf~eVLP~yD~dRVy 107 (134)
....++.-.++.+.+|+.|++-+.
T Consensus 6 s~~~Ee~i~~LkeMFP~~D~~vI~ 29 (59)
T d1wgla_ 6 SGCSEEDLKAIQDMFPNMDQEVIR 29 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 767699999999987887799999
No 6
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.98 E-value=35 Score=14.12 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=45.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 023022467632777558899999987626762326855589789999999858865521353347898999
Q T0546 45 VISLADIAMYTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLIS 116 (134)
Q Consensus 45 Vs~L~dIaiYT~~eevPL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliq 116 (134)
+..-.||.+-. |--|..||.--+.|.|.-+++-.........|++||..|.-.-|.|--.---|=|+|+
T Consensus 71 i~~~~~i~v~r---dsEl~r~LN~HYNk~N~~evP~~F~~v~~~TLrEFf~Ai~~gkD~e~sWKK~IYKvI~ 139 (152)
T d1mija_ 71 IKTPDDLLIAG---DSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIIS 139 (152)
T ss_dssp ---------------CHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHHHHHHHHTTGGGSTTTTHHHHHHHH
T ss_pred CCCHHHEEECC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 56688802254---5899999987514568775749999999999999999997388677304588999999
No 7
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=17.20 E-value=37 Score=14.01 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 61 PLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 61 PL~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
-+-+||.+-..++ |...+ -+..||+..+..=||++=....-+..+.++++=-+.= ..|-.+|.|
T Consensus 10 ~ii~vFhkYa~~~-G~~~t-----Lsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m~~LD~n-~Dg~vdF~E 73 (90)
T d3cr5x1 10 ALIDVFHQYSGRE-GDKHK-----LKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQE 73 (90)
T ss_dssp HHHHHHHHHHTSS-SSTTS-----BCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTT-SSSSBCHHH
T ss_pred HHHHHHHHHHCCC-CCCCC-----CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCHHH
T ss_conf 9999999970658-98572-----8799999999998789866899889999999986579-999697999
No 8
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=16.64 E-value=38 Score=13.92 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8899999987626762326855589789999999858865521353347898999998887368744335
Q T0546 62 LSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVE 131 (134)
Q Consensus 62 L~eV~~~i~~ke~g~~~~i~~kkas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYniL~~~g~~~F~e 131 (134)
+.+||.+-..++ |...++ +.+||+..+..-+|++-..+.-...++++++=-.. -..|..+|.|
T Consensus 11 i~~vF~kya~~d-Gd~~~l-----s~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~-n~Dg~IdF~E 73 (93)
T d1ksoa_ 11 IVCTFQEYAGRC-GDKYKL-----CQAELKELLQKELATWTPTEFRECDYNKFMSVLDT-NKDCEVDFVE 73 (93)
T ss_dssp HHHHHHHHHTSS-SCTTCE-----EHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHH-TTTCEECHHH
T ss_pred HHHHHHHHCCCC-CCCCEE-----CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 999999983758-998968-----79999999998644024568999999999999757-9999796999
No 9
>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.08 E-value=29 Score=14.65 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=10.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 30224676327775588999999876
Q T0546 47 SLADIAMYTDAEEVPLSEVLEAVKKK 72 (134)
Q Consensus 47 ~L~dIaiYT~~eevPL~eV~~~i~~k 72 (134)
-+..|+.++++ +..+++.+.++
T Consensus 85 G~~hiaf~V~d----i~~~~~~l~~~ 106 (149)
T d1sqia1 85 GVKDIAFEVED----CEHIVQKARER 106 (149)
T ss_dssp EEEEEEEEEEC----HHHHHHHHHHH
T ss_pred EEEEEEEEECC----HHHHHHHHHHC
T ss_conf 48999999523----99999999988
No 10
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=14.15 E-value=24 Score=15.13 Aligned_cols=14 Identities=43% Similarity=1.106 Sum_probs=0.0
Q ss_pred HHHHHCC---CCCEEEE
Q ss_conf 4211328---9832676
Q T0546 4 TILSIAG---KPGLYKL 17 (134)
Q Consensus 4 ~IlsIsG---KPGLykL 17 (134)
+|.++|| +||+|.+
T Consensus 1 Kl~~vSG~V~~PGvyE~ 17 (84)
T d2fug13 1 KLYQISGPVKRPGVYEL 17 (84)
T ss_dssp EEEEEESSBSSCEEEEE
T ss_pred CEEEEECCCCCCCEEEE
T ss_conf 95775146348936898
Done!