Query         T0547 BR53, unknown, 611 residues
Match_columns 611
No_of_seqs    261 out of 901
Neff          5.4 
Searched_HMMs 22458
Date          Fri May 21 18:10:37 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0547.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0547.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1twi_A Diaminopimelate decarbo 100.0       0       0  466.7  39.0  422    8-562     1-426 (434)
  2 2p3e_A Diaminopimelate decarbo 100.0       0       0  462.1  36.6  406   11-561     8-415 (420)
  3 2o0t_A Diaminopimelate decarbo 100.0       0       0  455.8  34.8  436    4-568     8-453 (467)
  4 2j66_A BTRK, decarboxylase; bu 100.0       0       0  437.1  35.1  412   27-570     4-424 (428)
  5 2qgh_A Diaminopimelate decarbo 100.0       0       0  430.0  38.6  396   27-562    20-417 (425)
  6 1f3t_A ODC, ornithine decarbox 100.0       0       0  436.9  32.1  397   18-539     8-409 (425)
  7 3btn_A Antizyme inhibitor 1; T 100.0       0       0  437.1  29.5  401   11-540     2-408 (448)
  8 7odc_A Protein (ornithine deca 100.0       0       0  420.4  35.3  395   18-540    10-410 (424)
  9 2oo0_A ODC, ornithine decarbox 100.0       0       0  420.3  34.5  387   28-539    27-419 (471)
 10 2plj_A Lysine/ornithine decarb 100.0       0       0  417.1  29.8  363   34-539    45-408 (419)
 11 1knw_A Diaminopimelate decarbo 100.0       0       0  399.0  33.9  391   28-562    14-417 (425)
 12 2nva_A Arginine decarboxylase, 100.0       0       0  396.4  32.8  366   33-538     3-372 (372)
 13 2yxx_A Diaminopimelate decarbo 100.0       0       0  376.7  28.0  380   33-562     2-383 (386)
 14 3gwq_A D-serine deaminase; YP_  99.5 1.8E-10 7.9E-15   97.2  23.4  207   42-276    43-254 (426)
 15 3llx_A Predicted amino acid al  99.3 1.5E-10 6.6E-15   97.7  17.1  207   42-282    11-226 (376)
 16 1vfs_A Alanine racemase; TIM-b  98.4 0.00016 7.1E-09   52.2  19.3  195   43-272     4-207 (386)
 17 3cpg_A Uncharacterized protein  98.2  0.0006 2.7E-08   47.9  22.5  201   42-264     9-234 (282)
 18 1w8g_A YGGS, hypothetical UPF0  98.2  0.0006 2.7E-08   47.9  18.9  194   55-272     4-203 (234)
 19 1xfc_A Alanine racemase; alpha  98.2 0.00055 2.5E-08   48.2  17.6  182   48-263    14-203 (384)
 20 3co8_A Alanine racemase; prote  98.1 0.00063 2.8E-08   47.7  16.3  155   47-237    11-171 (380)
 21 2vd8_A Alanine racemase; pyrid  98.0  0.0015 6.5E-08   45.0  19.6  185   45-263    10-201 (391)
 22 3kw3_A Alanine racemase; niaid  98.0 0.00038 1.7E-08   49.4  13.6  158   47-237    22-183 (376)
 23 1bd0_A Alanine racemase; isome  97.9  0.0016 6.9E-08   44.8  16.1  165   45-243     6-177 (388)
 24 1rcq_A Catabolic alanine racem  97.9  0.0023   1E-07   43.4  16.9  154   47-237     5-162 (357)
 25 3hur_A Alanine racemase; struc  97.9  0.0024 1.1E-07   43.3  17.4  179   43-259     6-191 (395)
 26 3e5p_A Alanine racemase; ALR,   97.9  0.0018 8.1E-08   44.3  15.9  165   43-239     5-175 (371)
 27 2rjg_A Alanine racemase; alpha  97.5  0.0033 1.4E-07   42.3  12.7  160   43-238    21-184 (379)
 28 2dy3_A Alanine racemase; alpha  97.4    0.01 4.7E-07   38.5  17.7  179   48-263     6-189 (361)
 29 1ct5_A Protein (yeast hypothet  89.7       1 4.5E-05   23.5  23.5  195   55-269    14-218 (256)
 30 2o57_A Putative sarcosine dime  62.9     5.7 0.00026   17.8   3.5   56  124-183    81-137 (297)
 31 2g5x_A Lychnin, ribosome-inact  52.0     8.5 0.00038   16.6   2.9   29  516-544    89-117 (234)
 32 3bus_A REBM, methyltransferase  49.7     6.7  0.0003   17.3   2.1   59  122-184    57-117 (273)
 33 1oo2_A Transthyretin; retinol-  44.3      12 0.00054   15.4   2.7   75  465-551    24-103 (119)
 34 1w99_A Pesticidial crystal pro  41.6     5.3 0.00023   18.1   0.5   64   52-117    60-127 (558)
 35 3ivs_A Homocitrate synthase, m  39.6      14 0.00063   14.9  11.9   31  206-238   206-236 (423)
 36 2wc1_A Flavodoxin; electron tr  38.2      15 0.00066   14.7   3.3  111  187-315    56-181 (182)
 37 3chv_A Prokaryotic domain of u  38.0      15 0.00067   14.7   7.7   45  204-252    29-77  (284)
 38 1yle_A Arginine N-succinyltran  37.6      15 0.00067   14.7   4.1   63   21-86      4-66  (342)
 39 2d1z_A Endo-1,4-beta-D-xylanas  37.0      15 0.00069   14.6   3.6   56  209-272   183-240 (436)
 40 1w32_A Endo-1,4-beta-xylanase   34.5      17 0.00075   14.3   8.0   61  208-276   191-255 (348)
 41 1kpg_A CFA synthase;, cyclopro  34.0      17 0.00076   14.3   2.7   26  374-399   255-280 (287)
 42 1x13_A NAD(P) transhydrogenase  33.6      13 0.00059   15.1   1.5   21  470-490   280-300 (401)
 43 2gmw_A D,D-heptose 1,7-bisphos  33.3      18 0.00078   14.2  11.4  131   29-168    53-204 (211)
 44 3c6c_A 3-keto-5-aminohexanoate  30.7      19 0.00086   13.9   5.2   65  203-280    42-111 (316)
 45 2qkg_A Insecticidal delta-endo  30.5      14 0.00062   15.0   1.2   57   53-111   103-162 (589)
 46 2ebj_A Pyrrolidone carboxyl pe  29.6     8.8 0.00039   16.4   0.0   12  439-450   136-147 (192)
 47 1iu8_A Pyrrolidone-carboxylate  28.9     5.6 0.00025   17.9  -1.0   17  229-245   129-145 (206)
 48 1ffv_B CUTL, molybdoprotein of  28.3      16 0.00073   14.4   1.2   67  118-192   246-323 (803)
 49 3hww_A 2-succinyl-5-enolpyruvy  28.2      15 0.00069   14.6   1.1   89  510-598   436-551 (556)
 50 2w5f_A Endo-1,4-beta-xylanase   28.1      21 0.00094   13.6   4.9   24  213-239   250-274 (540)
 51 1ta3_B Endo-1,4-beta-xylanase;  27.8      21 0.00095   13.5   6.7   37  210-246   185-221 (303)
 52 2hiy_A Hypothetical protein; C  27.6      22 0.00096   13.5   3.8  130   17-171    44-182 (183)
 53 2uwf_A Endoxylanase, alkaline   25.8      23   0.001   13.3   7.7   12  229-240   222-233 (356)
 54 1phz_A Protein (phenylalanine   24.8      24  0.0011   13.1   2.7   40  320-363   249-288 (429)
 55 2qw5_A Xylose isomerase-like T  24.6      24  0.0011   13.1  15.5   16   30-45     32-47  (335)
 56 3lac_A Pyrrolidone-carboxylate  24.3      15 0.00068   14.6   0.5   16  230-245   134-149 (215)
 57 1fkm_A Protein (GYP1P), ORF YO  24.3      17 0.00075   14.3   0.7   87  367-456   305-391 (396)
 58 1j8u_A Phenylalanine-4-hydroxy  24.0      25  0.0011   13.0   2.2   22  321-342   148-169 (325)
 59 2h4e_A Transthyretin; amyloid,  23.6      25  0.0011   13.0   3.6   75  465-551    32-111 (127)
 60 3e49_A Uncharacterized protein  23.4      25  0.0011   13.0   4.7   73  507-594   227-302 (311)
 61 3d6j_A Putative haloacid dehal  23.0      26  0.0012   12.9   4.8   13   63-75     25-37  (225)
 62 1us2_A Xylanase10C, endo-beta-  22.8      26  0.0012   12.9   5.3   35  191-229   213-247 (530)
 63 3e02_A Uncharacterized protein  22.6      26  0.0012   12.8   6.2   74  506-594   226-302 (311)
 64 1n62_B Carbon monoxide dehydro  22.5      26  0.0011   12.9   1.3   66  119-192   250-326 (809)
 65 3cqb_A Probable protease HTPX   22.4      27  0.0012   12.8   3.0   31  298-328    27-57  (107)
 66 1aug_A Pyroglutamyl peptidase-  21.7      14 0.00063   14.9  -0.1   15  230-244   135-149 (215)
 67 3giu_A Pyrrolidone-carboxylate  21.6     9.1  0.0004   16.3  -1.1   12  439-450   141-152 (215)
 68 3m0z_A Putative aldolase; MCSG  21.4      28  0.0012   12.7   4.9  100  184-318   120-221 (249)
 69 1i60_A IOLI protein; beta barr  21.2      28  0.0012   12.6  11.8   55  211-267    48-102 (278)
 70 1x10_A Pyrrolidone-carboxylate  20.8      15 0.00067   14.7  -0.1   15  230-244   133-147 (208)
 71 1dlc_A Delta-endotoxin CRYIIIA  20.4      29  0.0013   12.5   1.4   86   52-151   103-191 (584)

No 1  
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00  E-value=0  Score=466.68  Aligned_cols=422  Identities=24%  Similarity=0.340  Sum_probs=347.3

Q ss_pred             CCCCCCCEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             67788743306746872788888899999998557998589874799999999999999999997088987237874533
Q T0547             8 IWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKV   87 (611)
Q Consensus         8 ~Wg~~yF~i~~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKa   87 (611)
                      .||+..|++.+|++++   +++++.||+++     ||||+||++++.|+++++++++||+++..+++  .+++++||+||
T Consensus         1 ~~~~~~~~~~~~~l~~---~~~~~~~la~~-----~GTP~yV~d~~~i~~n~~~l~~af~~~~~~~g--~~~~v~YAvKa   70 (434)
T 1twi_A            1 MLGNDTVEIKDGRFFI---DGYDAIELAEK-----FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG--KEFIVAYAYKA   70 (434)
T ss_dssp             CTTCTTEEEETTEEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHS--CCEEEEEEGGG
T ss_pred             CCCCCEEEEECCEEEE---CCEEHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECC
T ss_conf             9888818998999999---99579999997-----69988998799999999999998877676238--86499998634


Q ss_pred             CCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             7878999999984666785166228899999996489988178788-989999999985423571048986688999999
Q T0547            88 NQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAI  166 (611)
Q Consensus        88 N~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I  166 (611)
                      |+++.|++.+.+.|    +|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+.   .|++ .+++||.+|++++
T Consensus        71 N~~~~vl~~l~~~G----~G~dvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~l~~A~~---~gv~-~~~~ds~~el~~i  142 (434)
T 1twi_A           71 NANLAITRLLAKLG----CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE---ANIR-AFNVDSISELILI  142 (434)
T ss_dssp             CCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCS-EEEECSHHHHHHH
T ss_pred             CCCHHHHHHHHHHC----CCEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH---CCEE-EEECCCHHHHHHH
T ss_conf             89899999999839----98499789999987531257422345566430666667876---7860-3322203566666


Q ss_pred             HHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHH--HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf             999998469862268888507887764-22046665647889899--999999998668987347888633887678899
Q T0547           167 IDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTE--LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHP  243 (611)
Q Consensus       167 ~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~  243 (611)
                      .+++++ .+.++++++|++|.....++ ...+++..||||++.++  ....+....+...+ .+.|+|||+|||+.+...
T Consensus       143 ~~~~~~-~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~~~~~~~~l-~~~GlhfHvgS~~~~~~~  220 (434)
T 1twi_A          143 NETAKE-LGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYV-NVVGVHCHIGSQLTDISP  220 (434)
T ss_dssp             HHHHHH-HTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHHHCSSE-EEEEEECCCCSSBCCSHH
T ss_pred             HHHHHH-CCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCH
T ss_conf             667887-099855012214676756663242254222456530013678999998874136-555620333012244306


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf             99999999999999997179940587245565547777777777788889999999999999999648998778870756
Q T0547           244 LKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGR  323 (611)
Q Consensus       244 ~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGR  323 (611)
                      +..+++.+..++.++++.|. .+++||+||||+++|.......    +...++..+......  .....+.|+|++||||
T Consensus       221 ~~~~~~~~~~~~~~~~~~g~-~~~~ldiGGG~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~l~~EPGR  293 (434)
T 1twi_A          221 FIEETRKVMDFVVELKEEGI-EIEDVNLGGGLGIPYYKDKQIP----TQKDLADAIINTMLK--YKDKVEMPNLILEPGR  293 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCSEEECCCCBCCCSSSSSCCC----CHHHHHHHHHHHHHT--TTTTSCCCEEEECCSH
T ss_pred             HHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC----HHHHHHHHHHHHHHH--HHCCCCCCEEEECCCC
T ss_conf             89999999999999998399-8047640366664323565321----024431012332221--1024677569833872


Q ss_pred             HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             77750411455221022356666545565445178999999997307434688999999999999999736966789998
Q T0547           324 FVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRS  403 (611)
Q Consensus       324 aivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra  403 (611)
                      |+||.+++||++|++++......                                                         
T Consensus       294 ~lva~ag~lvt~V~~~k~~~~~~---------------------------------------------------------  316 (434)
T 1twi_A          294 SLVATAGYLLGKVHHIKETPVTK---------------------------------------------------------  316 (434)
T ss_dssp             HHHGGGEEEEEEEEEEEECSSCE---------------------------------------------------------
T ss_pred             EEEECCCCCEEEEEEEECCCCCC---------------------------------------------------------
T ss_conf             13214423057899852258762---------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             99999999999999851234560467888888755653303244223101000663120135467888651048733643
Q T0547           404 NAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITC  483 (611)
Q Consensus       404 ~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTC  483 (611)
                                                         +++++-|+..++++.|-. ..+|+.+...-  .+.....+++-||
T Consensus       317 -----------------------------------~~~~d~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~i~G~tC  358 (434)
T 1twi_A          317 -----------------------------------WVMIDAGMNDMMRPAMYE-AYHHIINCKVK--NEKEVVSIAGGLC  358 (434)
T ss_dssp             -----------------------------------EEEESCCTTTCCHHHHHC-CCCCEEESBCC--SCEEEEEEECSSS
T ss_pred             -----------------------------------EEEECCCCCCCCCCHHHC-CCCCEEEECCC--CCCCEEEEEEECC
T ss_conf             -----------------------------------699713467877530200-01100220268--9961799994488


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf             7466301467776556778887896078886020699974775156789857999988996288751378878999987
Q T0547           484 DSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED  562 (611)
Q Consensus       484 DSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~  562 (611)
                      ||...+...    .+|+++.. |  -+|-|..+|||.-.+....|-|..+.+|-|+  +++..  -+.+.+|.+|+++.
T Consensus       359 ~s~D~l~~~----~~lp~l~~-G--D~l~f~~~GAY~~~~~s~FN~~~~p~~v~v~--~~~~~--~ir~~~t~ed~~~~  426 (434)
T 1twi_A          359 ESSDVFGRD----RELDKVEV-G--DVLAIFDVGAYGISMANNYNARGRPRMVLTS--KKGVF--LIRERETYADLIAK  426 (434)
T ss_dssp             CTTCEEEEE----EEEECCCT-T--CEEEEECCSSSSGGGCBCTTTCCCCEEEEEE--TTEEE--EEECCCCHHHHTTT
T ss_pred             CCCCEECCC----CCCCCCCC-C--CEEEECCCCCCCHHHCCCCCCCCCCCEEEEE--CCEEE--EEECCCCHHHHHHC
T ss_conf             897689945----30688998-9--9999949850438464766799988299998--99089--99768999999746


No 2  
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00  E-value=0  Score=462.07  Aligned_cols=406  Identities=22%  Similarity=0.332  Sum_probs=335.1

Q ss_pred             CCCCEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf             88743306746872788888899999998557998589874799999999999999999997088987237874533787
Q T0547            11 NENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQY   90 (611)
Q Consensus        11 ~~yF~i~~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~   90 (611)
                      .+||+..+|++++   +++++.+|+++     ||||+||++++.|++++++++++|+.          .+++||+|||++
T Consensus         8 ~~~~~~~~~~l~~---~~~~l~~l~~~-----~gTP~yv~d~~~i~~n~~~l~~a~p~----------~~i~YAvKaN~~   69 (420)
T 2p3e_A            8 NPYLEYRDGELFI---EGVSLKELAQT-----FGTPLYVYSSNFIKERFEAYRKAFPD----------ALICYAVKANFN   69 (420)
T ss_dssp             CTTEEEETTEEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHSTT----------SEEEEEGGGCCC
T ss_pred             CCCCEEECCEEEE---CCCCHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEECCCCC
T ss_conf             8651698999999---99019999996-----39988998999999999999986899----------889999666899


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf             8999999984666785166228899999996489988178788-989999999985423571048986688999999999
Q T0547            91 PGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDI  169 (611)
Q Consensus        91 ~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~i  169 (611)
                      +.|++.+.+.|    .|+||+|.+|+.+|+++|+++++|+++| +|++++++.|+.   .|.. ++++||.+|+++|.+.
T Consensus        70 ~~vl~~l~~~G----~g~dvaS~~El~~al~~G~~~~~Ii~~~p~k~~~~i~~a~~---~gv~-~~~~ds~~El~~i~~~  141 (420)
T 2p3e_A           70 PHLVKLLGELG----AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD---SEIL-MFNVESRQELDVLNEI  141 (420)
T ss_dssp             HHHHHHHHHTT----CEEEESSHHHHHHHHHTTCCGGGEEECSSCCCHHHHHHHHH---TTCS-EEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHCC----CCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HHCC-CCCCCCHHHHHHHHHH
T ss_conf             89999999819----98289858999999985999110687466531367899987---4012-3455778888999988


Q ss_pred             HHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             998469862268888507887764-2204666564788989999999999866898734788863388767889999999
Q T0547           170 AKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKAL  248 (611)
Q Consensus       170 a~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai  248 (611)
                      +++ .+..++|+||+||.....++ +..+++..||||++.+++..++..+++...+ .+.|||||+|||+.+++.|+.++
T Consensus       142 ~~~-~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~~~~~~l-~~~GlHfH~gS~~~~~~~~~~~~  219 (420)
T 2p3e_A          142 AGK-LGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENL-EIVGIHCHIGSQILDISPYREAV  219 (420)
T ss_dssp             HHH-HTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHHTCTTE-EEEEEECCCCSSBSSCTHHHHHH
T ss_pred             HHH-CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCHHHHHHHH
T ss_conf             874-3999679999834877667756557776555564305668888887654797-38999980898769838988778


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHC
Q ss_conf             99999999999717994058724556554777777777778888999999999999999964899877887075677750
Q T0547           249 NEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAAN  328 (611)
Q Consensus       249 ~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~  328 (611)
                      +++.+++.++.+.|. .+++||+||||+++|.......    ..+.+..       ..+.....+.|+|++|||||+||+
T Consensus       220 ~~~~~~~~~~~~~g~-~l~~idiGGG~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~l~~EPGR~lva~  287 (420)
T 2p3e_A          220 EKVVSLYESLTQKGF-DIKYLDIGGGLGIKYKPEDKEP----APQDLAD-------LLKDLLENVKAKIILEPGRSIMGN  287 (420)
T ss_dssp             HHHHHHHHHHHHTTC-CCCEEECCCCBCCCCSTTCCCC----CHHHHHH-------HHTTTC--CCSEEEECCSHHHHGG
T ss_pred             HHHHHHHHHHHHHCC-CCCEEECCCCCCCCCCCCCCCC----CHHHHHH-------HHHHHHHCCCCEEEEEECCEEEEC
T ss_conf             999999998887299-8554530676475677654431----0466789-------999876455877999215357506


Q ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             41145522102235666654556544517899999999730743468899999999999999973696678999899999
Q T0547           329 HAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEIL  408 (611)
Q Consensus       329 ~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l  408 (611)
                      +++||++|++++......                                                              
T Consensus       288 ag~lv~~V~~~k~~~~~~--------------------------------------------------------------  305 (420)
T 2p3e_A          288 AGILITQVQFLKDKGSKH--------------------------------------------------------------  305 (420)
T ss_dssp             GEEEEEEEEEEEEETTEE--------------------------------------------------------------
T ss_pred             EEEEEEEEEEEEECCCEE--------------------------------------------------------------
T ss_conf             189999999998479817--------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             99999999985123456046788888875565330324422310100066312013546788865104873364374663
Q T0547           409 THLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGE  488 (611)
Q Consensus       409 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~  488 (611)
                                                    ++++|-+++..+..+|- +..+++.|... ++.+.....+++-||||...
T Consensus       306 ------------------------------~~~vd~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~i~G~tC~~~D~  353 (420)
T 2p3e_A          306 ------------------------------FIIVDAGMNDLIRPSIY-NAYHHIIPVET-KERKKVVADIVGPICETGDF  353 (420)
T ss_dssp             ------------------------------EEEESCCTTTCCHHHHH-CCCCCEEESBC-CC---CEEEEECSSSSTTCE
T ss_pred             ------------------------------EEEEECCCCCCCCHHHH-CCCCCEECCCC-CCCCCEEEEEEECCCCCCCE
T ss_conf             ------------------------------99995675775564562-24421000114-77882279999717888888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHH
Q ss_conf             0146777655677888789607888602069997477515678985799998899628875137887899998
Q T0547           489 ISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE  561 (611)
Q Consensus       489 i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~  561 (611)
                      +-.    ..+|++++. |.  +|.|..+|||.-.+...+|-|..+.+|.|+   +| .++-+.+.+|.+|++.
T Consensus       354 l~~----~~~lp~l~~-GD--~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~---~g-~~~lir~ret~ed~~~  415 (420)
T 2p3e_A          354 LAL----DREIEEVQR-GE--YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE---NG-SVKLIRKRENYDYIVE  415 (420)
T ss_dssp             EEE----EEECCCCCT-TC--EEEECSCTTTTGGGCBCGGGCCCCEEEEEE---TT-EEEEEECCCCHHHHHG
T ss_pred             EEE----CCCCCCCCC-CC--EEEECCCCHHHHHHHCCCCCCCCCCEEEEE---CC-EEEEEECCCCHHHHHH
T ss_conf             904----663788999-99--999869673246563745489998589998---99-7999976899999986


No 3  
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00  E-value=0  Score=455.79  Aligned_cols=436  Identities=18%  Similarity=0.240  Sum_probs=352.9

Q ss_pred             CCCCCCCCCCCEEE-CCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             87676778874330-67468727888888999999985579985898747999999999999999999970889872378
Q T0547             4 YGIDIWGNENFIIK-NGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAV   82 (611)
Q Consensus         4 Y~i~~Wg~~yF~i~-~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~v   82 (611)
                      |=-++|=-..+..+ +|+|++   ++++|.+|+++     ||||+||++++.|+++++++++||.         ...+++
T Consensus         8 ~~~p~~~~~~~~~~~~g~l~~---~g~~l~~La~~-----~GTP~yV~d~~~i~~n~~~l~~a~~---------~~~~i~   70 (467)
T 2o0t_A            8 HLAPNVWPRNTTRDEVGVVCI---AGIPLTQLAQE-----YGTPLFVIDEDDFRSRCRETAAAFG---------SGANVH   70 (467)
T ss_dssp             CCCTTTSCTTEEECSSSCEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHTS---------SGGGBE
T ss_pred             CCCCCCCCCCCEECCCCEEEE---CCEEHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCC---------CCCEEE
T ss_conf             478551788541889997999---99749999997-----6999899889999999999998558---------998799


Q ss_pred             EEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             745337878999999984666785166228899999996489988178788-9899999999854235710489866889
Q T0547            83 YPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLN  161 (611)
Q Consensus        83 YaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~  161 (611)
                      ||+|||+++.|++.+.+.|    +|+||+|.+|+.+|+++|+++++|+||| .|++++|+.|+..   |.. .+++||++
T Consensus        71 YAvKaN~~~~vl~~l~~~G----~G~dvaS~~El~~al~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~-~i~~Ds~~  142 (467)
T 2o0t_A           71 YAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKA---GVG-HIVVDSMT  142 (467)
T ss_dssp             EEGGGCCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHH---TCS-EEEECSHH
T ss_pred             EEECCCCCHHHHHHHHHCC----CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH---CCE-EEEECCHH
T ss_conf             9875489899999999819----979998999999999749896629982898999999998862---551-78867789


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHH--HHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf             99999999998469862268888507887764-22046665647889899--9999999986689873478886338876
Q T0547           162 ELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTE--LIEAVNLLKENKLLEQFTMIHFHLGSQI  238 (611)
Q Consensus       162 EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI  238 (611)
                      ||+++.+++++ .++.+++++|+++.....++ ...+++..+|||++.++  +...+..+.....+ .+.|+|||+|||+
T Consensus       143 El~~i~~~~~~-~~~~~~i~lrl~~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~~~~~~~~~-~l~Glh~H~gS~~  220 (467)
T 2o0t_A          143 EIERLDAIAGE-AGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHL-RLVGLHSHIGSQI  220 (467)
T ss_dssp             HHHHHHHHHHH-HTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHHHHCSSE-EEEEEECCCEEEE
T ss_pred             HHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCC
T ss_conf             99999998776-298742222026886555542223576544567540135789999999736698-4788998528887


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             7889999999999999999997----179940587245565547777777777788889999999999999999648998
Q T0547           239 TEIHPLKKALNEAGNIYTELRK----MGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE  314 (611)
Q Consensus       239 ~di~~~~~ai~ea~~ly~eL~~----~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~  314 (611)
                      .|++.|..+++.+..++.++.+    ..+..++++|+|||||++|.....+.    +++.|+..+...+++.+...+.+.
T Consensus       221 ~d~~~~~~a~~~~~~l~~~~~~~~~~~~~~~l~~ld~GGG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
T 2o0t_A          221 FDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPP----PIAELAAKLGTIVSDESTAVGLPT  296 (467)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCC----CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7708899999999998888998655650766331034078676777777776----378899999999998753205667


Q ss_pred             CEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             77887075677750411455221022356666545565445178999999997307434688999999999999999736
Q T0547           315 PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDL  394 (611)
Q Consensus       315 P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~  394 (611)
                      |+|++|||||+||.+++||++|+.++.........    .                                        
T Consensus       297 ~~l~~EPGR~lv~~ag~lvt~V~~~k~~~~k~~~~----~----------------------------------------  332 (467)
T 2o0t_A          297 PKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAH----R----------------------------------------  332 (467)
T ss_dssp             CEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCE----E----------------------------------------
T ss_pred             CEEEEECCEEEECCCCEEEEEEEEEEEECCCCCCC----E----------------------------------------
T ss_conf             51899557266236403899999987411223386----5----------------------------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96678999899999999999999851234560467888888755653303244223101000663120135467888651
Q T0547           395 GYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTR  474 (611)
Q Consensus       395 G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~  474 (611)
                                                                 ..+.++-+....++.+| .+..+|+.++.+..+.+..
T Consensus       333 -------------------------------------------~~v~~D~g~~~~~~~~~-~~~~~~i~~~~~~~~~~~~  368 (467)
T 2o0t_A          333 -------------------------------------------RYVSVDGGMSDNIRTAL-YGAQYDVRLVSRVSDAPPV  368 (467)
T ss_dssp             -------------------------------------------EEEEESCCTTTCCHHHH-HCCCCCEEECSSCCCSCEE
T ss_pred             -------------------------------------------EEEEECCCCCCCCCHHH-HCCCCCEEECCCCCCCCEE
T ss_conf             -------------------------------------------89998765545667566-0774634852577889757


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             04873364374663014677765567788878960788860206999747751567898579999889962887513788
Q T0547           475 SASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQ  554 (611)
Q Consensus       475 ~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gd  554 (611)
                      ...+++-||+|...+-.  +..+| .++. .|.  +|.|+.+|||+-.+...+|.|+.+-+|-|+  ++..  +-+.+.+
T Consensus       369 ~~~v~GptC~s~D~l~~--~~~lP-~~l~-~GD--~l~~~~~GAY~~s~ss~fN~~~~P~~v~i~--~g~~--~lirrre  438 (467)
T 2o0t_A          369 PARLVGKHCESGDIIVR--DTWVP-DDIR-PGD--LVAVAATGAYCYSLSSRYNMVGRPAVVAVH--AGNA--RLVLRRE  438 (467)
T ss_dssp             EEEEECSSSSTTCEEEE--EEEEE-TTCC-TTC--EEEESCCSSSSSTTCBCGGGCCCCEEEEEE--TTEE--EEEECCC
T ss_pred             EEEEEECCCCCCCEEEE--CCCCC-CCCC-CCC--EEEECCCCHHHHHHHCCCCCCCCCCEEEEE--CCEE--EEEECCC
T ss_conf             99999718898779904--54478-8899-999--999859213257774726699998389999--9969--9998889


Q ss_pred             CHHHHHHH-HCCCHH
Q ss_conf             78999987-285888
Q T0547           555 SILDTLED-LDYDIH  568 (611)
Q Consensus       555 t~~~vL~~-v~y~~~  568 (611)
                      |.+|+++. ++-.|+
T Consensus       439 t~ed~~~~~~~~~p~  453 (467)
T 2o0t_A          439 TVDDLLSLEVRGVPR  453 (467)
T ss_dssp             CHHHHHTTBCC----
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             999998534201876


No 4  
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00  E-value=0  Score=437.12  Aligned_cols=412  Identities=18%  Similarity=0.250  Sum_probs=323.5

Q ss_pred             CCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf             88888999999985579985898747999999999999999999970889872378745337878999999984666785
Q T0547            27 KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNY  106 (611)
Q Consensus        27 ~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~  106 (611)
                      .+.+|.+|+++     ||||+||++++.|++++++++++|.         ...+++||+|||+++.|++.+.+.|    .
T Consensus         4 ~~~~l~~la~~-----~gTP~yv~d~~~i~~n~~~l~~~~~---------~~~~i~yA~KaN~~~~vl~~l~~~g----~   65 (428)
T 2j66_A            4 DQAEITALTKR-----FETPFYLYDGDFIEAHYRQLRSRTN---------PAIQFYLSLKANNNIHLAKLFRQWG----L   65 (428)
T ss_dssp             CHHHHHHHHHH-----SCSSEEEEEHHHHHHHHHHHHHTSC---------TTEEEEEEGGGCCCHHHHHHHHHTT----C
T ss_pred             CHHHHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEECCCCCHHHHHHHHHCC----C
T ss_conf             64329999984-----1999899889999999999985268---------9978999874279999999999819----9


Q ss_pred             EEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             166228899999996489988178788-9899999999854235710489866889999999999984698622688885
Q T0547           107 GLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR  185 (611)
Q Consensus       107 GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~  185 (611)
                      |+||+|.+|+.+|+++|+++++|+||| +|++++++.|+.   .|.. ++++|+.+|+++|...++. .++..++++|++
T Consensus        66 g~dv~S~~El~~al~~G~~~~~i~~~gp~k~~~~l~~a~~---~gv~-~~~~ds~~~~~~i~~~~~~-~~~~~~v~~r~~  140 (428)
T 2j66_A           66 GVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQ---SGIY-CIIAESVEELFYIEELAEK-ENKTARVAIRIN  140 (428)
T ss_dssp             EEEESSHHHHHHHHHTTCCGGGEEECCSCCCHHHHHHHHH---HTCS-EEEECSHHHHHHHHHHHHH-HTCCEEEEEEEE
T ss_pred             CEEEECHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHH---CCEE-EECCCCHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf             1997599999999985999322898788664999877762---5804-3126899999999998875-398627997327


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             07887764220466656478898999999999986689873478886338876788999999999999999999717994
Q T0547           186 LHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN  265 (611)
Q Consensus       186 l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~  265 (611)
                      +.......+..+|+..+|||++.+++.+++..++....+ .+.|+|||+|||+.+.+.|.++++++.+++..+.+..+..
T Consensus       141 ~~~~~~~~~~~~g~~~~kfg~~~~~~~~~~~~~~~~~~~-~~~GlH~h~GS~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  219 (428)
T 2j66_A          141 PDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFT-KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIV  219 (428)
T ss_dssp             CSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHCTTE-EEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             875520122212666543564202348899876531566-2688687378775411569999999999999999964996


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf             05872455655477777777777888899999999999999996489987788707567775041145522102235666
Q T0547           266 LKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYA  345 (611)
Q Consensus       266 l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~  345 (611)
                      +++||+||||+++|.....+    +++++|+..+...++.. .+...|.|+|++|||||+||++++||++|++++.....
T Consensus       220 ~~~ldiGGG~~~~~~~~~~~----~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~  294 (428)
T 2j66_A          220 CECINLGGGFGVPYFSHEKA----LDIGKITRTVSDYVQEA-RDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGE  294 (428)
T ss_dssp             CSEEECCCCBCCCCC--CCC----CCHHHHHHHHHHHHHHH-HTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTE
T ss_pred             CCEECCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHH-HHHCCCCCEEEEECCEEEEHHCCCEEEEEEEEECCCCC
T ss_conf             41212367767664335663----20788999999999987-75138874699724433601115367899997147984


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             65455654451789999999973074346889999999999999997369667899989999999999999985123456
Q T0547           346 ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQN  425 (611)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~  425 (611)
                      ..                                                                              
T Consensus       295 ~~------------------------------------------------------------------------------  296 (428)
T 2j66_A          295 VF------------------------------------------------------------------------------  296 (428)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             EE------------------------------------------------------------------------------
T ss_conf             69------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-----CCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             0467888888755653303244223101000-----66312013546-78886510487336437466301467776556
Q T0547           426 PADLLAIQDEVQERYLVNFSLFQSMPDFWGL-----EQNFPIMPLDR-LDEEPTRSASIWDITCDSDGEISYSKDKPLFL  499 (611)
Q Consensus       426 ~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai-----~Q~Fpi~Pl~r-l~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~l  499 (611)
                                    +.++-+....+++.|--     .+..+..|+.. -..++....+|++-||+|...+-.    ..+|
T Consensus       297 --------------~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~tC~~~D~l~~----~~~l  358 (428)
T 2j66_A          297 --------------VIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGK----DVHV  358 (428)
T ss_dssp             --------------EEESCCTTTCTTC-----------CEEEEC---------CEEEEEECSSSSTTCEEEE----EEEE
T ss_pred             --------------EEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEECC----CCCC
T ss_conf             --------------9984500035652433632122330477740377777884179998659997526632----5547


Q ss_pred             CCCCCCCCCEEEEEEECCHHHHHHCCCC-CCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH-HCCCHHHH
Q ss_conf             7788878960788860206999747751-56789857999988996288751378878999987-28588899
Q T0547           500 HDVDVEKENYFLGFFLVGAYQEVLGMKH-NLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED-LDYDIHAI  570 (611)
Q Consensus       500 h~~~~~~e~y~lG~FlvGAYQeiLGd~H-NLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~-v~y~~~~l  570 (611)
                      ++++. |.  +|.|+.+|||+..|+..| |-+..+-+|.  ++++.+++  +.+.+|.+|++.. ++++..-|
T Consensus       359 p~l~~-GD--~l~f~~~GAY~~s~s~~~fn~~p~p~~vl--~~~g~~~l--ir~ret~ed~~~~~~~~~~~~~  424 (428)
T 2j66_A          359 PALYP-GD--LVCVLNSGAYGLSFSPVHFLGHPTPIEIL--KRNGSYEL--IRRKGTADDIVATQLQTESNLL  424 (428)
T ss_dssp             SCCCT-TC--EEEESSCSSSSGGGSCTTGGGCCCCEEEE--EETTEEEE--EECCCCHHHHHGGGC-------
T ss_pred             CCCCC-CC--EEEEECCCCCHHHHHCHHHCCCCCCCEEE--EECCEEEE--EECCCCHHHHHHCCCCCCCCCC
T ss_conf             88999-99--99991886315656021223999980999--98998999--9788989999855134543531


No 5  
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00  E-value=0  Score=429.97  Aligned_cols=396  Identities=21%  Similarity=0.269  Sum_probs=321.6

Q ss_pred             CCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf             88888999999985579985898747999999999999999999970889872378745337878999999984666785
Q T0547            27 KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNY  106 (611)
Q Consensus        27 ~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~  106 (611)
                      ...++.+|+++     +|||+||++++.|++++++++++|+.        -..++.||+|||+++.|++.+.+.|    +
T Consensus        20 ~~~~~~~l~~~-----~gTP~yv~d~~~l~~n~~~l~~a~~~--------~~~~v~YAvKaN~~~~vl~~l~~~G----~   82 (425)
T 2qgh_A           20 HMFNYEELFQT-----HKTPFYLYDFDKIKQAFLNYKEAFKG--------RKSLICYALKANSNLSILSLLAHLE----S   82 (425)
T ss_dssp             ---CHHHHHHH-----CCSSEEEEEHHHHHHHHHHHHHTTCS--------SCEEEEEEGGGCCCHHHHHHHHHTT----C
T ss_pred             CCCCHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHHHHHHHHHCC----C
T ss_conf             54899999871-----49988997699999999999985799--------9975999984289999999999849----9


Q ss_pred             EEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             166228899999996489988178788-9899999999854235710489866889999999999984698622688885
Q T0547           107 GLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR  185 (611)
Q Consensus       107 GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~  185 (611)
                      |+||+|++|+.+|+++|+++.+|+|+| +|+.++++.|+.   .|.. ++++||++|+++|.+++++ .+++++++||++
T Consensus        83 g~dvaS~~El~~al~~G~~~~~ii~~g~~k~~~~i~~a~~---~~v~-~~~~ds~~el~~l~~~~~~-~~~~~~v~lRin  157 (425)
T 2qgh_A           83 GADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK---LNIL-FLNVESFMELKTIETIAQS-LGIKARISIRIN  157 (425)
T ss_dssp             EEEESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHH---TTCS-EEEECSHHHHHHHHHHHHH-HTCCEEEEEEBC
T ss_pred             CEEEECHHHHHHHHHCCCCHHHCEECCCCCCHHHHHHHHH---CCEE-EEEEECHHHHHHHHHHHHH-CCCCCEEEEEEE
T ss_conf             5998299999999975998001332155477899999875---0324-6663031157899999886-299727999983


Q ss_pred             ECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             07887764-22046665647889899999999998668987347888633887678899999999999999999971799
Q T0547           186 LHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK  264 (611)
Q Consensus       186 l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~  264 (611)
                      |.....++ +..+|+..||||++..++.+.+..++....+ .+.|+|||+|||+.+...++.+++.+..++.++...|. 
T Consensus       158 p~~~~~~~~~~~~g~~~skfG~~~~~~~~~~~~~~~~~~l-~~~GlhfH~gS~~~~~~~~~~ai~~~~~~~~~~~~~g~-  235 (425)
T 2qgh_A          158 PNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL-EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI-  235 (425)
T ss_dssp             CCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHHCSSE-EEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf             6887566755046765575771167888998754411534-78899974787767607789999888999999998389-


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCC
Q ss_conf             40587245565547777777777788889999999999999999648998778870756777504114552210223566
Q T0547           265 NLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY  344 (611)
Q Consensus       265 ~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~  344 (611)
                      .++++|+||||+++|......     +..+++..+.       ....-+.+++++||||++||.+++||++|+++|....
T Consensus       236 ~l~~idiGGG~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~  303 (425)
T 2qgh_A          236 DLRFFDVGGGIGVSYENEETI-----KLYDYAQGIL-------NALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQN  303 (425)
T ss_dssp             CCCEEECCCCBCCCTTSCCCC-----CHHHHHHHHH-------HHTTTCCCEEEECCCHHHHTTTEEEEEEEEEEEC--C
T ss_pred             CCCEEEECCCCCCCCCCCCCH-----HHHHHHHHHH-------HHHHCCCCEEEEEECCEEEECCCEEEEEEEEEEECCC
T ss_conf             875345468667788764302-----4899999999-------9861457536740012786336089999999974299


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             66545565445178999999997307434688999999999999999736966789998999999999999998512345
Q T0547           345 AENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQ  424 (611)
Q Consensus       345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~  424 (611)
                      ..                                                                              
T Consensus       304 ~~------------------------------------------------------------------------------  305 (425)
T 2qgh_A          304 KR------------------------------------------------------------------------------  305 (425)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CE------------------------------------------------------------------------------
T ss_conf             25------------------------------------------------------------------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             60467888888755653303244223101000663120135467888651048733643746630146777655677888
Q T0547           425 NPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDV  504 (611)
Q Consensus       425 ~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~  504 (611)
                                    ++++|-+++..++..| .+..+|+.+...-+.++.....+++-||||...+...    .+|+++..
T Consensus       306 --------------~~ivD~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~GptC~~~D~l~~~----~~LP~l~~  366 (425)
T 2qgh_A          306 --------------FVIVDAGMNDFLRPSL-YHAKHAIRVITPSKGREISPCDVVGPVCESSDTFLKD----AHLPELEP  366 (425)
T ss_dssp             --------------EEEESCCTTTCCHHHH-HCCCCCEEECSCC---CCEEEEEECSSSSTTCEEEEE----EEECCCCT
T ss_pred             --------------EEEECCCHHCCCCHHH-CCCCCCEEECCCCCCCCCEEEEEECCCCCCCCEECCC----CCCCCCCC
T ss_conf             --------------9998774102467455-0565422651356788840799990487777888636----64789999


Q ss_pred             CCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf             7896078886020699974775156789857999988996288751378878999987
Q T0547           505 EKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED  562 (611)
Q Consensus       505 ~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~  562 (611)
                       | + +|.|..+|||.-.++...|-|..+.+|-|  +++..++  +.+.+|.+|++..
T Consensus       367 -G-D-~l~f~~~GAYt~~~~s~FN~~p~p~~v~~--~~g~~~~--ir~ret~ed~~~~  417 (425)
T 2qgh_A          367 -G-D-KIAIEKVGAYGSSMASQYNSRPKLLELAL--EDHKIRV--IRKREALEDLWRL  417 (425)
T ss_dssp             -T-C-EEEECSCSSSSGGGCCCTTTCCCCEEEEE--CC-CEEE--EECCCCGGGGTGG
T ss_pred             -C-C-EEEECCCCCCHHHHCCCCCCCCCCEEEEE--ECCEEEE--EECCCCHHHHHHH
T ss_conf             -9-9-99994975112645375548999839999--8997999--9768999999970


No 6  
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00  E-value=0  Score=436.94  Aligned_cols=397  Identities=20%  Similarity=0.244  Sum_probs=313.8

Q ss_pred             CCEEEECCCCCCCHHHHHHHH---HHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH
Q ss_conf             674687278888889999999---85579985898747999999999999999999970889872378745337878999
Q T0547            18 NGKVCINYEKKPAIIDIVKEL---RDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFV   94 (611)
Q Consensus        18 ~G~l~v~p~~~~~l~dlv~~l---~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv   94 (611)
                      ++.+..+-..+.++.+++.+.   ..++.|||+||++.+.|+.|+++++++|+.          .+++||+|||+++.|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtP~yv~d~~~i~~~~~~~~~~lp~----------~~~~YAvKaN~~~~vl   77 (425)
T 1f3t_A            8 NDDLSCRFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPR----------VTPFYAVKCNDDWRVL   77 (425)
T ss_dssp             ------CBCCCSSHHHHHHHHCC------CCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGGGCCCHHHH
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEECCCCCHHHH
T ss_conf             786655653586388899864300347899837995899999999999986899----------8888885248989999


Q ss_pred             HHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             999984666785166228899999996489988178788-9899999999854235710489866889999999999984
Q T0547            95 KNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKER  173 (611)
Q Consensus        95 ~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~  173 (611)
                      +.+.+.|    +|+||+|.+|+.+|+++|+++.+|+++| +|++++|+.|+.   .|.+ .+++||++||++|.+.+   
T Consensus        78 ~~l~~~G----~g~dvaS~~El~~al~aG~~~~~Ii~~gp~Ks~~el~~A~~---~gv~-~i~~Ds~~eL~~i~~~~---  146 (425)
T 1f3t_A           78 GTLAALG----TGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARD---SGVD-VMTFDCVDELEKVAKTH---  146 (425)
T ss_dssp             HHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHC---
T ss_pred             HHHHHHC----CEEEECCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHHC---
T ss_conf             9999839----95996299999999986989042999479899999999998---7999-99967889999999867---


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             69862268888507887764220466656478898999999999986689873478886338876788999999999999
Q T0547           174 FKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGN  253 (611)
Q Consensus       174 l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~  253 (611)
                        .+.++.+|+++....     .+++..||||++.+++.++++.+++.+.  .+.|+|||+|||+.+...|..+++.+..
T Consensus       147 --~~~~v~~Ri~~~~~~-----~~~~~~sKFGi~~~~~~~~l~~~~~~~l--~l~GlH~H~GS~~~~~~~~~~~i~~~~~  217 (425)
T 1f3t_A          147 --PKAKMVLRISTDDSL-----ARCRLSVKFGAKVEDCRFILEQAKKLNI--DVTGVSFHVGSGSTDASTFAQAISDSRF  217 (425)
T ss_dssp             --TTCEEEEEBCC---------------CCSCBCHHHHHHHHHHHHHTTC--EEEEEECCCCSCCSCTHHHHHHHHHHHH
T ss_pred             --CCCCEEEEEECCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             --899727996146766-----7687888889879999999999986698--3899863267677797999999999999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEE
Q ss_conf             99999971799405872455655477777777777888899999999999999996489987788707567775041145
Q T0547           254 IYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLI  333 (611)
Q Consensus       254 ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv  333 (611)
                      ++..+++.|. .+++||+|||||++|+.       .+++++|+..|...+++.+..  ...|+|++||||++||.+++|+
T Consensus       218 l~~~~~~~g~-~l~~idiGGG~~~~~~~-------~~~~~~~~~~i~~~l~~~~~~--~~~~~l~~EPGR~lva~ag~lv  287 (425)
T 1f3t_A          218 VFDMGTELGF-NMHILDIGGGFPGTRDA-------PLKFEEIAGVINNALEKHFPP--DLKLTIVAEPGRYYVASAFTLA  287 (425)
T ss_dssp             HHHHHHHTTC-CCCEEECCCCCCSSTTS-------SSCHHHHHHHHHHHHHHHSCC--CTTCEEEECCSHHHHGGGEEEE
T ss_pred             HHHHHHHHCC-CCCEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCC--CCCCEEEEECCCCEEECEEEEE
T ss_conf             9999998199-74068645776777889-------999999999999999986154--6796899904641562338999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             52210223566665455654451789999999973074346889999999999999997369667899989999999999
Q T0547           334 APVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLIT  413 (611)
Q Consensus       334 ~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~  413 (611)
                      ++|+++|...........  +       .                                                   
T Consensus       288 t~V~~~K~~~g~~~~i~~--~-------~---------------------------------------------------  307 (425)
T 1f3t_A          288 VNVIAKKVTPGVQTDVGA--H-------A---------------------------------------------------  307 (425)
T ss_dssp             EEEEEEEEC-----------------------------------------------------------------------
T ss_pred             EEEEEEEECCCCEEEEEC--C-------C---------------------------------------------------
T ss_conf             999999953881577512--4-------4---------------------------------------------------


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             99998512345604678888887556533032442231010006631201354-67888651048733643746630146
Q T0547           414 KKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLD-RLDEEPTRSASIWDITCDSDGEISYS  492 (611)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~-rl~e~P~~~~~l~DiTCDSDG~i~~~  492 (611)
                                        ....-.-.|++|-+++.++...|-=.+.+..+|.. .....+....++++-||+|...+-. 
T Consensus       308 ------------------~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~~C~~~D~l~~-  368 (425)
T 1f3t_A          308 ------------------ESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVE-  368 (425)
T ss_dssp             ----------------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCTTCCEEEEEEECSSSCTTCEEEE-
T ss_pred             ------------------CCCCCCEEEEECCHHCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE-
T ss_conf             ------------------4576532899670103656777731343001356688888877789999518888749947-


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             77765567788878960788860206999747751567898579999
Q T0547           493 KDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS  539 (611)
Q Consensus       493 ~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~  539 (611)
                       +  .+|+++. .|.  +|.|+.+|||...++...|.|..+.+|.|.
T Consensus       369 -~--~~LP~l~-~GD--~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~  409 (425)
T 1f3t_A          369 -R--YYLPEMQ-VGE--WLLFEDMGAYTVVGTSSFNGFQSPTIYYVV  409 (425)
T ss_dssp             -E--EEEECCC-TTC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEC
T ss_pred             -C--CCCCCCC-CCC--EEEECCCCHHHHHHCCCCCCCCCCEEEEEE
T ss_conf             -7--6988999-999--998728561037664766699998199999


No 7  
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00  E-value=0  Score=437.08  Aligned_cols=401  Identities=19%  Similarity=0.214  Sum_probs=312.5

Q ss_pred             CCCCEEECCEEEECC-CCCCCHHHHHHHHHHC---CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             887433067468727-8888889999999855---799858987479999999999999999999708898723787453
Q T0547            11 NENFIIKNGKVCINY-EKKPAIIDIVKELRDD---GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLK   86 (611)
Q Consensus        11 ~~yF~i~~G~l~v~p-~~~~~l~dlv~~l~~~---~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK   86 (611)
                      +||++-  ++-++.. .+++++.+|++....+   .-++|+||++.+.|++|+++++++|++          .+++||+|
T Consensus         2 ~~~~~~--~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~pfyv~dl~~i~~~~~~~~~~lp~----------v~~~YAvK   69 (448)
T 3btn_A            2 KGFIDD--ANYSVGLLDEGTNLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQ----------IKPFYTVK   69 (448)
T ss_dssp             --------CCEEEEEECTTCCHHHHHHHHHHHHHHSSCCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGG
T ss_pred             CCCCCC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEEC
T ss_conf             741026--552167750897699999998763146789977992699999999999987899----------86887731


Q ss_pred             ECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             37878999999984666785166228899999996489988178788-98999999998542357104898668899999
Q T0547            87 VNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEA  165 (611)
Q Consensus        87 aN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~  165 (611)
                      ||+++.|++.+.+.|    +|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+.   .|.+ ++++||++||++
T Consensus        70 aN~~~~vl~~l~~~G----~G~DvaS~~El~~al~~G~~~~~Iif~gp~Ks~~~i~~A~~---~Gv~-~~~vDs~~EL~~  141 (448)
T 3btn_A           70 CNSTPAVLEILAALG----TGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAK---VGVN-IMTCDNEIELKK  141 (448)
T ss_dssp             GCCCHHHHHHHHHHT----CEEEESSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHH
T ss_pred             CCCCHHHHHHHHHCC----CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHH
T ss_conf             189899999999839----94999699999999976979574999999999999999998---7994-999899999999


Q ss_pred             HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf             99999984698622688885078877642204666564788989999999999866898734788863388767889999
Q T0547           166 IIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLK  245 (611)
Q Consensus       166 I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~  245 (611)
                      |.+.     ..++++.+||++....+     +++..||||++.+++.++++.+++.+.  .+.|+|||+|||+.+.+.|.
T Consensus       142 i~~~-----~~~~~v~lRI~~~~~~~-----~~~~~sKFGi~~~~~~~~l~~~~~~~l--~l~GlH~HvGS~~~~~~~~~  209 (448)
T 3btn_A          142 IARN-----HPNAKVLLHIATEDNIG-----GEDGNMKFGTTLKNCRHLLECAKELDV--QIIGVKFHVSSACKEYQVYV  209 (448)
T ss_dssp             HHHH-----CTTCEEEEEBCCCC-------------CCCCBCHHHHHHHHHHHHHHTC--EEEEEECCCCTTCCCTTHHH
T ss_pred             HHHH-----CCCCCEEEEECCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHH
T ss_conf             9976-----89996389861466677-----776777678899999999999976798--78674320476757779999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
Q ss_conf             99999999999999717994058724556554777777777778888999999999999999964899877887075677
Q T0547           246 KALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFV  325 (611)
Q Consensus       246 ~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRai  325 (611)
                      .+++++..++..+++.|. .+++||||||||++|.          ..++|+..+...+...+..  -+.++|++|||||+
T Consensus       210 ~ai~~~~~~~~~~~~~g~-~l~~iDiGGGf~~~~~----------~~e~~~~~i~~~l~~~~~~--~~~~~li~EPGR~l  276 (448)
T 3btn_A          210 HALSDARCVFDMAGEFGF-TMNMLDIGGGFTGTEI----------QLEEVNHVISPLLDIYFPE--GSGIQIISEPGSYY  276 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCCEEECCSCCCSCHH----------HHHHHHHHHHHHHHHHSCT--TSCCEEEECCSHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----------CHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCEE
T ss_conf             999999999999997599-5305523786787888----------7677899999999864122--68975996598604


Q ss_pred             HHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             75041145522102235666654556544517899999999730743468899999999999999973696678999899
Q T0547           326 AANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNA  405 (611)
Q Consensus       326 vA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~  405 (611)
                      ||.+++|+++|+++|.............+       .                                           
T Consensus       277 va~ag~lvt~V~~~K~~~~~~~~~~v~~~-------g-------------------------------------------  306 (448)
T 3btn_A          277 VSSAFTLAVNIIAKKVVENDKFSSGVEKN-------G-------------------------------------------  306 (448)
T ss_dssp             HTTTEEEEEEEEEEEEC---------------------------------------------------------------
T ss_pred             EECEEEEEEEEEEEEECCCCCEEEEEECC-------C-------------------------------------------
T ss_conf             20208999999999972686146665036-------7-------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC-CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             99999999999985123456046788888875565330324422310100066312-01354678886510487336437
Q T0547           406 EILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFP-IMPLDRLDEEPTRSASIWDITCD  484 (611)
Q Consensus       406 E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fp-i~Pl~rl~e~P~~~~~l~DiTCD  484 (611)
                                                 .....-.|+.|-+++.|+++.|--++.+. .+.-.+-..+|....++++-|||
T Consensus       307 ---------------------------~~~~~~~~~i~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~  359 (448)
T 3btn_A          307 ---------------------------SDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCD  359 (448)
T ss_dssp             -------------------------------CEEEEESCCTTTTTGGGGC----CCCEECCC-----CEEEEEEECTTCS
T ss_pred             ---------------------------CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf             ---------------------------66611024642123304788876413556554556667887578999952878


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf             46630146777655677888789607888602069997477515678985799998
Q T0547           485 SDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI  540 (611)
Q Consensus       485 SDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~  540 (611)
                      |...+-.  +  .+|+++. .|.  +|.|+.+|||.-.|....|-|..+.+|-|.-
T Consensus       360 s~D~l~~--~--~~LP~l~-~GD--~L~~~~~GAY~~s~ss~fNg~~~Pa~v~v~~  408 (448)
T 3btn_A          360 ELDQIVE--S--CLLPELN-VGD--WLIFDNMGADSFHEPSAFNDFQRPAIYFMMS  408 (448)
T ss_dssp             TTCEEEE--E--EEEECCC-TTC--EEEESSCCSSCCCCCCGGGTTCCCEEEEEEE
T ss_pred             CCCEEEE--C--CCCCCCC-CCC--EEEECCCCCCCCHHCCCCCCCCCCEEEEEEE
T ss_conf             8778917--9--6998999-999--9988597703132318988999870899990


No 8  
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00  E-value=0  Score=420.43  Aligned_cols=395  Identities=19%  Similarity=0.218  Sum_probs=306.0

Q ss_pred             CCEEEECCCCCCCHHHHHHHH----HHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf             674687278888889999999----8557998589874799999999999999999997088987237874533787899
Q T0547            18 NGKVCINYEKKPAIIDIVKEL----RDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF   93 (611)
Q Consensus        18 ~G~l~v~p~~~~~l~dlv~~l----~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~V   93 (611)
                      +.|+..   .+.+..|++++.    ......||+||++.+.|++|++++.++|+          ..+++||+|||+++.|
T Consensus        10 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~pfyv~d~~~i~~~~~~~~~~lp----------~v~~~YAvKaN~~~~i   76 (424)
T 7odc_A           10 DCHILD---EGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP----------RVTPFYAVKCNDSRAI   76 (424)
T ss_dssp             EEEEEC---SSCCHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHH
T ss_pred             EEEEEC---CCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHH
T ss_conf             278832---886399999999886424789986899479999999999998689----------9868888513898999


Q ss_pred             HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             9999984666785166228899999996489988178788-989999999985423571048986688999999999998
Q T0547            94 VKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE  172 (611)
Q Consensus        94 v~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~  172 (611)
                      ++.+.+.|    +|+||+|.+||.+|+++|+++++|+|+| +|++++|+.|+.   .|.+ .+++||+.||+++.+.   
T Consensus        77 l~~l~~~G----~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~i~~A~~---~gv~-~i~~ds~~EL~~i~~~---  145 (424)
T 7odc_A           77 VSTLAAIG----TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAAS---NGVQ-MMTFDSEIELMKVARA---  145 (424)
T ss_dssp             HHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHH---
T ss_pred             HHHHHHCC----CCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHH---
T ss_conf             99999849----97899789999999974959363999899999999999998---5996-7996799999999976---


Q ss_pred             HCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             46986226888850788776422046665647889899999999998668987347888633887678899999999999
Q T0547           173 RFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAG  252 (611)
Q Consensus       173 ~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~  252 (611)
                        ....++++|+++...     ..+++..+|||++.+++.++++.++..+.  .+.|+|||+|||+.++..|..+++++.
T Consensus       146 --~~~~~v~~Ri~~~~~-----~~~~~~~skFG~~~~~~~~~~~~~~~~~l--~l~Glh~HvGS~~~~~~~~~~~~~~~~  216 (424)
T 7odc_A          146 --HPKAKLVLRIATDDS-----KAVCRLSVKFGATLKTSRLLLERAKELNI--DVIGVSFHVGSGCTDPDTFVQAVSDAR  216 (424)
T ss_dssp             --CTTCEEEEEBCC----------------CCCBCHHHHHHHHHHHHHTTC--EEEEEECCCCSSCCCTHHHHHHHHHHH
T ss_pred             --CCCCCCCEEEECCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             --555776335405864-----34456667888568999999999875698--588999985887762577898888899


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEE
Q ss_conf             99999997179940587245565547777777777788889999999999999999648998778870756777504114
Q T0547           253 NIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVL  332 (611)
Q Consensus       253 ~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vL  332 (611)
                      .++..+++.|. .+++||+|||||++|+..       .+.++|+..+...+...+...  +.++|++||||++||.+++|
T Consensus       217 ~~~~~~~~~g~-~~~~idiGGGf~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~--~~~~li~EPGR~lva~ag~l  286 (424)
T 7odc_A          217 CVFDMATEVGF-SMHLLDIGGGFPGSEDTK-------LKFEEITSVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTL  286 (424)
T ss_dssp             HHHHHHHHHTC-CCCEEECCCCCCCSSSSS-------SCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEE
T ss_pred             HHHHHHHHHCC-CCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHCCC--CCCEEEECCCHHHHHHCEEE
T ss_conf             99999875247-763576078756676677-------898997555434466530247--89669963864502324289


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             55221022356666545565445178999999997307434688999999999999999736966789998999999999
Q T0547           333 IAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLI  412 (611)
Q Consensus       333 v~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i  412 (611)
                      +++|++++..........   +.       .                                                 
T Consensus       287 vt~V~~~K~~~~~~~~~~---~~-------~-------------------------------------------------  307 (424)
T 7odc_A          287 AVNIIAKKTVWKEQPGSD---DE-------D-------------------------------------------------  307 (424)
T ss_dssp             EEEEEEEEEEC---------------------------------------------------------------------
T ss_pred             EEEEEEEEEECCCCCCCC---CC-------C-------------------------------------------------
T ss_conf             999999998424223434---54-------3-------------------------------------------------


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             9999985123456046788888875565330324422310100066-312013546788865104873364374663014
Q T0547           413 TKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ-NFPIMPLDRLDEEPTRSASIWDITCDSDGEISY  491 (611)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q-~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~  491 (611)
                            .  .           ..-.-.|++|-+++.++..+|--.. ..++++-.+-.+.+.....+++-||||-..+-.
T Consensus       308 ------~--~-----------~~~~~~~~vd~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~  368 (424)
T 7odc_A          308 ------E--S-----------NEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVE  368 (424)
T ss_dssp             ----------------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE
T ss_pred             ------C--C-----------CCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEECC
T ss_conf             ------4--5-----------66258999875546677777740365046544688887877789999728688768864


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf             6777655677888789607888602069997477515678985799998
Q T0547           492 SKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI  540 (611)
Q Consensus       492 ~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~  540 (611)
                        +..  |+++.. |+  +|.|+.+|||.-.|...+|-|..+.+|.|.-
T Consensus       369 --~~~--Lp~l~~-GD--~l~~~~~GAY~~~~ss~fN~~~~P~~v~v~~  410 (424)
T 7odc_A          369 --RCN--LPEMHV-GD--WMLFENMGAYTVAAASTFNGFQRPNIYYVMS  410 (424)
T ss_dssp             --EEE--EECCCT-TC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEEE
T ss_pred             --CCC--CCCCCC-CC--EEEECCCCCCHHHHCCCCCCCCCCCEEEEEE
T ss_conf             --547--789999-99--9999398851265536567999985899997


No 9  
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00  E-value=0  Score=420.34  Aligned_cols=387  Identities=20%  Similarity=0.227  Sum_probs=301.1

Q ss_pred             CCCHHHH----HHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCC
Q ss_conf             8888999----999985579985898747999999999999999999970889872378745337878999999984666
Q T0547            28 KPAIIDI----VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKD  103 (611)
Q Consensus        28 ~~~l~dl----v~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~  103 (611)
                      .....|+    +.++..+...+|+||++.+.|++|++++.++|+.          .+++||+|||+++.|++.+.+.|  
T Consensus        27 ~~~~~d~~~~~i~~~~~~~~~~pfyv~D~~~i~~~~~~~~~~lp~----------v~~~YAvKaN~~~~vl~~l~~~G--   94 (471)
T 2oo0_A           27 GFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPR----------VTPFYAVKCNDSKAIVKTLAATG--   94 (471)
T ss_dssp             TCCHHHHHHHHHHHTTTSSCCCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGGGCCCHHHHHHHHHHT--
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEEEECCCHHHHHHHHHCC--
T ss_conf             420999999999975046799887996899999999999986899----------86887741089899999999849--


Q ss_pred             CCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             785166228899999996489988178788-9899999999854235710489866889999999999984698622688
Q T0547           104 YNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGL  182 (611)
Q Consensus       104 ~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~Igi  182 (611)
                        .|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+.   .|.+ +|++||++||++|.+.+     ...++++
T Consensus        95 --~G~DvaS~gEl~~al~~G~~~~~Iif~gp~K~~~ei~~A~~---~gv~-~i~~dS~~EL~~i~~~~-----~~~~v~l  163 (471)
T 2oo0_A           95 --TGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN---NGVQ-MMTFDSEVELMKVARAH-----PKAKLVL  163 (471)
T ss_dssp             --CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHC-----TTCEEEE
T ss_pred             --CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHHH-----CCCCCCC
T ss_conf             --93998399999999976989452999799899999999998---5996-99967999999999750-----1476334


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88507887764220466656478898999999999986689873478886338876788999999999999999999717
Q T0547           183 RVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG  262 (611)
Q Consensus       183 Rv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g  262 (611)
                      |++++..     ..+++..+|||++.+++..+++.++..+.  .+.|||||+|||+.+.+.|.++++.+..++..+++.|
T Consensus       164 Ri~~~~~-----~~~~~~~~KFG~~~~~~~~~~~~~~~~~l--~l~GlH~HiGSq~~d~~~~~~~i~~~~~~~~~~~~~g  236 (471)
T 2oo0_A          164 RIATDDS-----KAVCRLSVKFGATLRTSRLLLERAKELNI--DVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVG  236 (471)
T ss_dssp             EECCCCT-----TSSBCCTTTSCBCHHHHHHHHHHHHHTTC--EEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             3567865-----54211467744248999999998875596--0899999828865630789999998888999998609


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCC
Q ss_conf             99405872455655477777777777888899999999999999996489987788707567775041145522102235
Q T0547           263 AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ  342 (611)
Q Consensus       263 ~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~  342 (611)
                      . .+++||+|||||++|+..       .++++|+..+...+...+...  +.++|++|||||+||++++||++|+++|..
T Consensus       237 ~-~~~~ldiGGGf~~~~~~~-------~~~e~~~~~~~~~~~~~~~~~--~~~~li~EPGR~lva~ag~lvt~V~~~K~~  306 (471)
T 2oo0_A          237 F-SMYLLDIGGGFPGSEDVK-------LKFEEITGVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTLAVNIIAKKIV  306 (471)
T ss_dssp             C-CCCEEECCCCCCSSSSSS-------SCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEEEEEEEEEEEE
T ss_pred             C-CCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCEEEEEEEEEEEEEEEEEEE
T ss_conf             7-632102467756666677-------788899999988776521357--884699744707864107999999999973


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             66665455654451789999999973074346889999999999999997369667899989999999999999985123
Q T0547           343 EYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGD  422 (611)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~  422 (611)
                      .......   .+       ..                                                       ....
T Consensus       307 ~~~~~g~---~~-------~~-------------------------------------------------------~~~~  321 (471)
T 2oo0_A          307 LKEQTGS---DD-------ED-------------------------------------------------------ESSE  321 (471)
T ss_dssp             C------------------------------------------------------------------------------C
T ss_pred             CCCCCCC---CC-------CC-------------------------------------------------------CCCC
T ss_conf             1311344---44-------44-------------------------------------------------------4667


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4560467888888755653303244223101000-663120135467888651048733643746630146777655677
Q T0547           423 KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL-EQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHD  501 (611)
Q Consensus       423 ~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai-~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~  501 (611)
                                   ....|++|-+++.++..+|-- ....|+++-......+.....+++-||||...+-.    ..+|++
T Consensus       322 -------------~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~----~~~LP~  384 (471)
T 2oo0_A          322 -------------QTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVE----RCDLPE  384 (471)
T ss_dssp             -------------CEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEEC
T ss_pred             -------------CEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEE----CEECCC
T ss_conf             -------------448999887666534567652265235543787877877689999227688878944----407789


Q ss_pred             CCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             88878960788860206999747751567898579999
Q T0547           502 VDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS  539 (611)
Q Consensus       502 ~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~  539 (611)
                      +.. |.  +|.|..+|||.-.|...+|.|..+.+|-|.
T Consensus       385 l~~-GD--~l~i~~~GAY~~s~ss~fN~~~~P~~v~v~  419 (471)
T 2oo0_A          385 MHV-GD--WMLFENMGAYTVAAASTFNGFQRPTIYYVM  419 (471)
T ss_dssp             CCT-TC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEE
T ss_pred             CCC-CC--EEEEECCCCCHHHHCCCCCCCCCCEEEEEE
T ss_conf             998-99--999938876337655777799998089998


No 10 
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00  E-value=0  Score=417.08  Aligned_cols=363  Identities=19%  Similarity=0.313  Sum_probs=292.3

Q ss_pred             HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf             99999855799858987479999999999999999999708898723787453378789999999846667851662288
Q T0547            34 IVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSK  113 (611)
Q Consensus        34 lv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk  113 (611)
                      +.+.+.++ ||||+||++++.|++|+++++++|+          +.+++||+|||+++.|++.+.+.|    +|+||+|+
T Consensus        45 l~~~~v~~-~GTP~yV~d~~~l~~n~~~~~~~~~----------~~~i~YAvKAN~~~~il~~l~~~G----~g~dv~S~  109 (419)
T 2plj_A           45 LIEASVEQ-FGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG----ASFDLATT  109 (419)
T ss_dssp             HHHHHHHH-HCSSEEEEEHHHHHHHHHHHHHHST----------TEEEEEESTTCCCHHHHHHHHHHT----CEEEECSH
T ss_pred             HHHHHHHH-CCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEEECCCCHHHHHHHHHCC----CCEEEECH
T ss_conf             89999872-1998899899999999999998689----------988999963288899999999839----98899899


Q ss_pred             HHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf             99999996489988178788-98999999998542357104898668899999999999846986226888850788776
Q T0547           114 AELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVG  192 (611)
Q Consensus       114 ~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g  192 (611)
                      +||.+|+++|+++++|+|+| +|++++|+.|+.   .|.+ .+++||++||+++.++++. .+    +.+|+.+.  ...
T Consensus       110 ~El~~al~aG~~~~~Ii~~gp~Ks~~el~~al~---~gv~-~i~vDs~~El~~l~~~a~~-~~----~~iri~~r--~~~  178 (419)
T 2plj_A          110 GEVELVASEGVPADLTIHTHPIKRDADIRDALA---YGCN-VFVVDNLNELEKFKAYRDD-VE----LLVRLSFR--NSE  178 (419)
T ss_dssp             HHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHTTGGGTTT-CE----EEEEBCC------
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEECCCHHHHHHHHHHCCC-CE----EEEEEEEC--CCC
T ss_conf             999999975969021898999888476999997---3984-6740328899999975522-50----58877522--563


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             42204666564788989999999999866898734788863388767889999999999999999997179940587245
Q T0547           193 IWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG  272 (611)
Q Consensus       193 ~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG  272 (611)
                         .+++..+|||++.+++.++++.++..+.  .+.|+|||+|||+.+.+.+..+++++.+++.++.+..++.+++||+|
T Consensus       179 ---~~~~~~~kfG~~~~~~~~~~~~~~~~~l--~~~Gih~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~idiG  253 (419)
T 2plj_A          179 ---AFADLSKKFGCSPEQALVIIETAKEWNI--RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIG  253 (419)
T ss_dssp             --------CCCSCBCHHHHHHHHHHHHHTTC--EEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECC
T ss_pred             ---CCCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             ---3343468877798999999999986799--76788886575657751057799999999987666317775356406


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             56554777777777778888999999999999999964899877887075677750411455221022356666545565
Q T0547           273 GGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILK  352 (611)
Q Consensus       273 GGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~  352 (611)
                      ||||++|+....      .++.|+..+...+     ....+.|+|++||||++||++++|+++|++++......      
T Consensus       254 GG~~~~y~~~~~------~~~~~~~~~~~~~-----~~~~~~~~li~EPGR~lva~ag~ll~~V~~~k~~~~~~------  316 (419)
T 2plj_A          254 GGFPVNYTQQVM------PIDQFCAPINEAL-----SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQI------  316 (419)
T ss_dssp             CCCCCCSSSCCC------CHHHHHHHHHHHH-----TTSCTTCEEEECCCHHHHGGGEEEEEEEEEEEEETTEE------
T ss_pred             CCCCCCCCCCCC------CHHHHHHHHHHHH-----HHCCCCCEEECCCCCEEEECCEEEEEEEEEEEECCCCE------
T ss_conf             976745765667------7567777888876-----63036600005876115405168999999998516725------


Q ss_pred             CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             44517899999999730743468899999999999999973696678999899999999999999851234560467888
Q T0547           353 KQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAI  432 (611)
Q Consensus       353 ~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l  432 (611)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (419)
T 2plj_A          317 --------------------------------------------------------------------------------  316 (419)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             88875565330324422310100066312013546788865104873364374663014677765567788878960788
Q T0547           433 QDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLG  512 (611)
Q Consensus       433 ~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG  512 (611)
                            ++++|-+++.++++.|--++.+|+.+..+=.  +.....+++-||+|...+   ... .+|++++ .|.  +|.
T Consensus       317 ------~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~G~~C~~~D~l---~~~-~~lp~l~-~GD--~L~  381 (419)
T 2plj_A          317 ------WYYLDDGIYGSFSGLMFDDARYPLTTIKQGG--ELIPSVLSGPTCDSVDVI---AEN-ILLPKLN-NGD--LVI  381 (419)
T ss_dssp             ------EEEESCCTTTGGGHHHHSCCCCCEEESCCSS--CEEEEEEECSSSCTTCEE---EEE-EEEECCC-TTC--EEE
T ss_pred             ------EEEEECCCCCCCCHHHCCCCCCCEECCCCCC--CCCEEEEECCCCCCCCEE---CCC-CCCCCCC-CCC--EEE
T ss_conf             ------8997024123567234136646446457888--755599881797863588---845-3888999-999--999


Q ss_pred             EEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             860206999747751567898579999
Q T0547           513 FFLVGAYQEVLGMKHNLFTHPTEAIIS  539 (611)
Q Consensus       513 ~FlvGAYQeiLGd~HNLfg~t~~v~v~  539 (611)
                      |+.+|||.-.|...-|-|..+.+|-|+
T Consensus       382 i~~~GAY~~~~as~fN~~~~p~~V~v~  408 (419)
T 2plj_A          382 GRTMGAYTSATATDFNFFKRAQTIALN  408 (419)
T ss_dssp             ESSCSSSSGGGCBCGGGCCCCEEEEEC
T ss_pred             ECCCCHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             889773357662868899988089996


No 11 
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00  E-value=0  Score=399.05  Aligned_cols=391  Identities=20%  Similarity=0.239  Sum_probs=293.4

Q ss_pred             CCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCE
Q ss_conf             88889999999855799858987479999999999999999999708898723787453378789999999846667851
Q T0547            28 KPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYG  107 (611)
Q Consensus        28 ~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~G  107 (611)
                      ..+|.+|+++     ||||+||++++.|++++++++++             .+++||+|||+++.|++.+.+.|    +|
T Consensus        14 ~~~l~~l~~~-----yGTP~yv~d~~~i~~~~~~l~~~-------------~~i~YAvKaN~~~~vl~~l~~~G----~g   71 (425)
T 1knw_A           14 AENLLRLPAE-----FGCPVWVYDAQIIRRQIAALKQF-------------DVVRFAQKACSNIHILRLMREQG----VK   71 (425)
T ss_dssp             HHHHHHHHHH-----HCSSEEEEEHHHHHHHHHTTTTS-------------SEEEEEGGGCCCHHHHHHHHHTT----CE
T ss_pred             HHHHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHCC-------------CEEEEEEECCCCHHHHHHHHHCC----CC
T ss_conf             9999999997-----79998998799999999985266-------------98999961078999999999839----98


Q ss_pred             EEECCHHHHHHHHHCCCCC----CCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             6622889999999648998----8178788-9899999999854235710489866889999999999984698622688
Q T0547           108 LEAGSKAELLLAMAYNNEG----APITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGL  182 (611)
Q Consensus       108 lEv~Sk~EL~~ala~g~~~----~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~Igi  182 (611)
                      +||+|++||.+|+++|+++    .+|+|+| +|+.++|+.|+.   .|.  .+++||.+||+++.++++     ..++++
T Consensus        72 ~DvaS~~El~~al~~G~~~~~~~~~Ii~~~p~k~~~~i~~a~~---~g~--~i~~ds~~el~~l~~~~~-----~~~i~l  141 (425)
T 1knw_A           72 VDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSE---LQI--PVNAGSVDMLDQLGQVSP-----GHRVWL  141 (425)
T ss_dssp             EEECSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHH---HTC--CEEESSHHHHHHHHHHST-----TCEEEE
T ss_pred             EEEECHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHH---HCC--HHHHHHHHHHHHHHHHCC-----CCCEEE
T ss_conf             8998999999999869996677330797477546999986664---152--010014789999975356-----674421


Q ss_pred             EEEECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             88507887764-22046665647889899999999998668987347888633887678899999999999999999971
Q T0547           183 RVRLHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM  261 (611)
Q Consensus       183 Rv~l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~  261 (611)
                      |+++......+ ...+++..+|||++.+++..+...++..+.  ++.|+|||+|||+.+...++.+    ..++....+.
T Consensus       142 Ri~~~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~~~~~l--~~~GlhfHvgS~~~~~~~~~~~----~~~~~~~~~~  215 (425)
T 1knw_A          142 RVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL--QLVGIHMHIGSGVDYAHLEQVC----GAMVRQVIEF  215 (425)
T ss_dssp             EEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHHTTC--EEEEEECCCCCTTCHHHHHHHH----HHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCHHHHHHHH----HHHHHHHHHC
T ss_conf             137886644211235677765453240344678888875691--7988888427753267899999----9887765404


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCC
Q ss_conf             79940587245565547777777777788889999999999999999648998778870756777504114552210223
Q T0547           262 GAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS  341 (611)
Q Consensus       262 g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~  341 (611)
                      |. .++++|+|||||++|.....+.    ..+.++..+....+......+ ..|+|++||||++||.+++||++|++++.
T Consensus       216 g~-~l~~ldiGGG~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~li~EPGR~lva~ag~lvt~V~~~k~  289 (425)
T 1knw_A          216 GQ-DLQAISAGGGLSVPYQQGEEAV----DTEHYYGLWNAAREQIARHLG-HPVKLEIEPGRFLVAQSGVLITQVRSVKQ  289 (425)
T ss_dssp             TC-CCSEEECCCCCCCCCSTTCCCC----CHHHHHHHHHHHHHHHHHHHT-SCCEEEECCSHHHHGGGEEEEEEEEEEEE
T ss_pred             CC-EEEEEECCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHCCEEEEEEEEEEEE
T ss_conf             81-4666521577465778777788----989998888888887664136-52499843742201144379999989970


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             56666545565445178999999997307434688999999999999999736966789998999999999999998512
Q T0547           342 QEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLG  421 (611)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~  421 (611)
                      .....                                                                           
T Consensus       290 ~~~~~---------------------------------------------------------------------------  294 (425)
T 1knw_A          290 MGSRH---------------------------------------------------------------------------  294 (425)
T ss_dssp             ETTEE---------------------------------------------------------------------------
T ss_pred             CCCEE---------------------------------------------------------------------------
T ss_conf             69746---------------------------------------------------------------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC----CCCCCCEEEEECCCCCCCCCCCCCCC---
Q ss_conf             34560467888888755653303244223101000663120135467----88865104873364374663014677---
Q T0547           422 DKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRL----DEEPTRSASIWDITCDSDGEISYSKD---  494 (611)
Q Consensus       422 ~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl----~e~P~~~~~l~DiTCDSDG~i~~~~~---  494 (611)
                                       .++++-+... +...+..+..+|+.++.+.    +..|+...++++-||||...+.....   
T Consensus       295 -----------------~~~~d~g~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~GptC~s~D~l~~~~~~~~  356 (425)
T 1knw_A          295 -----------------FVLVDAGFND-LMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNV  356 (425)
T ss_dssp             -----------------EEEESCCTTT-SCHHHHHCCCCCEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCB
T ss_pred             -----------------EEEECCCCCC-CCCHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCC
T ss_conf             -----------------8997751256-6675663764412564157654446895389999268778707863566653


Q ss_pred             CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf             76556778887896078886020699974775156789857999988996288751378878999987
Q T0547           495 KPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED  562 (611)
Q Consensus       495 ~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~  562 (611)
                      ...+|+++.. |.  +|-|..+|||.-.++...|-|..+.+|-++   +| .++-+.+-+|++|++.-
T Consensus       357 ~~~~LP~l~~-GD--~l~f~~~GAYt~s~~s~FN~~p~p~~v~~~---~g-~~~~ir~ret~~d~~~~  417 (425)
T 1knw_A          357 ETRALPEVKA-GD--YLVLHDTGAYGASMSSNYNSRPLLPEVLFD---NG-QARLIRRRQTIEELLAL  417 (425)
T ss_dssp             CCEEEECCCT-TC--EEEEESCSSSSGGGCCCTTTCCCCCEEEEE---TT-EEEEEECCCCHHHHHTT
T ss_pred             CCCCCCCCCC-CC--EEEECCCCHHHHHHCCCCCCCCCCCEEEEE---CC-EEEEEECCCCHHHHHHC
T ss_conf             3354788999-99--999959763148653776799988689999---99-89999788999999721


No 12 
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00  E-value=0  Score=396.38  Aligned_cols=366  Identities=19%  Similarity=0.258  Sum_probs=289.3

Q ss_pred             HHHHHHHH--CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf             99999985--5799858987479999999999999999999708898723787453378789999999846667851662
Q T0547            33 DIVKELRD--DGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEA  110 (611)
Q Consensus        33 dlv~~l~~--~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv  110 (611)
                      ++++.+.+  .+.+||+||++.+.|++++++++++|+          +.+++||+|||+++.|++.+.+.|    +|+||
T Consensus         3 ~~~~~~~~~~~~~~~~fyv~d~~~i~~~~~~~~~~~p----------~v~~~YAvKAN~~~~il~~l~~~G----~g~dv   68 (372)
T 2nva_A            3 SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP----------RVTPHYAVKCNNDEVLLKTMCDKN----VNFDC   68 (372)
T ss_dssp             HHHHHHHHHCTTCCSEEEEECHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHTT----CEEEE
T ss_pred             HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHHHHHHHHCC----CEEEE
T ss_conf             8999999748788986899709999999999998789----------986888852089899999999849----82999


Q ss_pred             CCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf             28899999996489988178788-98999999998542357104898668899999999999846986226888850788
Q T0547           111 GSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSA  189 (611)
Q Consensus       111 ~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~  189 (611)
                      +|.+||.+|+++|+++++|+|+| +|++++|+.|+..   |.+ ++++||++||++|.+++     ...++.+|+++...
T Consensus        69 aS~~El~~al~~G~~~~~Ii~~gp~Ks~~el~~a~~~---gv~-i~~~ds~~el~~i~~~~-----~~~~~~~~~~~~~~  139 (372)
T 2nva_A           69 ASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQ---GVD-IATFDSSFELDKIHTYH-----PNCKMILRIRCDDP  139 (372)
T ss_dssp             CSHHHHHHHHHHTCCGGGEEECCSCCCHHHHHHHHHH---TCC-EEEECSHHHHHHHHHHC-----TTCEEEEEBCCCCT
T ss_pred             ECHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHC---CCC-EEEECCHHHHHHHHHHC-----CCCCCCCCCCCCCC
T ss_conf             4999999999859994789982897999999999984---998-58976999999886533-----22222110024676


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             77642204666564788989999999999866898734788863388767889999999999999999997179940587
Q T0547           190 GVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAI  269 (611)
Q Consensus       190 ~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~L  269 (611)
                      ..     +++..+|||++..++.++++.++..+.  .+.|||||+|||+.+.+.|.++++.+.+++.++.+.+. .+++|
T Consensus       140 ~~-----~~~~~~kfg~~~~~~~~~~~~~~~~~l--~~~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  211 (372)
T 2nva_A          140 NA-----TVQLGNKFGANEDEIRHLLEYAKQLDI--EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH-KPYIL  211 (372)
T ss_dssp             TC-----SBCCTTTSSBCGGGHHHHHHHHHHTTC--CEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTC-CCCEE
T ss_pred             CC-----CCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEE
T ss_conf             44-----467888777664666899999986699--08999952586558858999999999999998875178-74287


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             24556554777777777778888999999999999999964899877887075677750411455221022356666545
Q T0547           270 NLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKL  349 (611)
Q Consensus       270 DIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~  349 (611)
                      |+|||||++|+..+.+.    ...++.+   ..++   +....+.|+|++||||++||++++|+++|++++......   
T Consensus       212 diGGGf~~~y~~~~~~~----~~~~~~~---~~~~---~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~---  278 (372)
T 2nva_A          212 DIGGGLHADIDEGELST----YMSDYIN---DAIK---DFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY---  278 (372)
T ss_dssp             ECCSCBCCCCC---CCC----HHHHHHH---HHHH---HHCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEETTEE---
T ss_pred             EECCCCCCCCCCCCCCC----CHHHHHH---HHHH---HCCCCCCCEEECCCCCEECCCEEEEEEEEEEEEECCCCE---
T ss_conf             75586465888776773----5999998---7654---113654543205740103126059999999999718822---


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             56544517899999999730743468899999999999999973696678999899999999999999851234560467
Q T0547           350 ILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL  429 (611)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~  429 (611)
                                                                                                      
T Consensus       279 --------------------------------------------------------------------------------  278 (372)
T 2nva_A          279 --------------------------------------------------------------------------------  278 (372)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8888887556533032442231010006631201354678-886510487336437466301467776556778887896
Q T0547           430 LAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLD-EEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN  508 (611)
Q Consensus       430 ~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~-e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~  508 (611)
                               .|++|-+++-++.+.+--.+.++..++.+.. ..+.....+++-||+|-..+-.  +..||  +++. |+ 
T Consensus       279 ---------~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~--~~~LP--~l~~-GD-  343 (372)
T 2nva_A          279 ---------EYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINH--NVALP--ELHI-GD-  343 (372)
T ss_dssp             ---------EEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE--EEEEE--CCCT-TC-
T ss_pred             ---------EEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCEECC--CCCCC--CCCC-CC-
T ss_conf             ---------687333114655430111036640220467887877789999369781538887--64179--9999-99-


Q ss_pred             EEEEEEECCHHHHHHCCCCCCCCCCCEEEE
Q ss_conf             078886020699974775156789857999
Q T0547           509 YFLGFFLVGAYQEVLGMKHNLFTHPTEAII  538 (611)
Q Consensus       509 y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v  538 (611)
                       +|.|..+|||--.|...-|=|+.+.++.|
T Consensus       344 -~l~i~~~GAY~~s~ss~fNg~~~p~v~~~  372 (372)
T 2nva_A          344 -WVYFPSWGAYTNVLTTSFNGFGEYDVYYI  372 (372)
T ss_dssp             -EEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred             -EEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             -99884955223866188889899837969


No 13 
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=376.72  Aligned_cols=380  Identities=21%  Similarity=0.313  Sum_probs=296.1

Q ss_pred             HHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999985579985898747999999999999999999970889872378745337878999999984666785166228
Q T0547            33 DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGS  112 (611)
Q Consensus        33 dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~S  112 (611)
                      |++++|.++ +|||+||++.+.|++++++++++|+++        +.+++||+|||+.+.|++.+.+.|    .|+||+|
T Consensus         2 ~~l~~l~~~-~gTP~~viD~~~l~~n~~~l~~~~~~~--------~~~~~yavKaN~~~~v~~~l~~~G----~g~~vaS   68 (386)
T 2yxx_A            2 DILRKVAEI-HGTPTYVYFEETLRKRSRLVKEVFEGV--------NLLPTFAVKANNNPVLLKILREEG----FGMDVVT   68 (386)
T ss_dssp             CHHHHHHHH-HCSSEEEEEHHHHHHHHHHHHHHTTTS--------CEEEEEEGGGCCCHHHHHHHHHTT----CEEEECS
T ss_pred             HHHHHHHHH-HCCCEEEEEHHHHHHHHHHHHHHCCCC--------CCEEEEEECCCCCHHHHHHHHHHC----CEEEEEC
T ss_conf             589999997-799889985999999999999746648--------977999976188599999999849----9599948


Q ss_pred             HHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf             899999996489988178788-9899999999854235710489866889999999999984698622688885078877
Q T0547           113 KAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGV  191 (611)
Q Consensus       113 k~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~  191 (611)
                      .+|+..++++|+++..|+++| +|++++++.|+.   .|.. .+++||++||+++.+++.+    ...+.+|+++...+.
T Consensus        69 ~~E~~~~~~aG~~~~~iv~~gp~k~~~~l~~a~~---~~~~-~~~~ds~~el~~l~~~a~~----~~~~~~~~~~~~~~~  140 (386)
T 2yxx_A           69 KGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLR---EDVR-IVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAK  140 (386)
T ss_dssp             HHHHHHHHHTTCCGGGEEECCSCCCHHHHHHHHH---TTCC-EEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTT
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HCCC-CEEECCHHHHHHHHHHCHH----CCCEEEEECCCCCCC
T ss_conf             9999999976979776996089899999999998---3998-5897699999999995521----375268971454444


Q ss_pred             CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             64-22046665647889899999999998668987347888633887678899999999999999999971799405872
Q T0547           192 GI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAIN  270 (611)
Q Consensus       192 g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LD  270 (611)
                      .+ ...||+..||||++.+++.++++.++.   + .+.|+|||+|||+.+.+.|..+++++.++....      .++.+|
T Consensus       141 ~~~~~~~g~~~srfG~~~~~~~~~~~~~~~---~-~~~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  210 (386)
T 2yxx_A          141 THPHISTGLKKHKFGIPLEDLDSFMERFRS---M-NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------GFEEIN  210 (386)
T ss_dssp             TSHHHHHHHHHSSSSEEGGGHHHHHHHHTT---S-CEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH------TCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---C-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC------CCCEEE
T ss_conf             577646677656568869999999996042---5-776778853556799999999999999986334------885898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf             45565547777777777788889999999999999999648998778870756777504114552210223566665455
Q T0547           271 LGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLI  350 (611)
Q Consensus       271 IGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~  350 (611)
                      +|||++++|....      ++++.|+..+...        ....|.++.||||++++.+++|+++|++++..+....   
T Consensus       211 iggG~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~EpGr~l~~~a~~l~t~V~~~k~~~~~~~---  273 (386)
T 2yxx_A          211 IGGGWGINYSGEE------LDLSSYREKVVPD--------LKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAF---  273 (386)
T ss_dssp             CCCCBCCCSSSCC------CCHHHHHHHTGGG--------GTTCSEEEEEECHHHHGGGEEEEEEEEEEEEETTEEE---
T ss_pred             ECCCCCCCCCCCC------CCHHHHHHHHHHH--------HCCCCEECCCCCCHHHHHHEEEEEEEEEEEEECCEEE---
T ss_conf             6787787888666------7989999999876--------4148703037764622610489999999986288179---


Q ss_pred             CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             65445178999999997307434688999999999999999736966789998999999999999998512345604678
Q T0547           351 LKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLL  430 (611)
Q Consensus       351 ~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~  430 (611)
                                                                                                      
T Consensus       274 --------------------------------------------------------------------------------  273 (386)
T 2yxx_A          274 --------------------------------------------------------------------------------  273 (386)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             88888755653303244223101000663120135467888651048733643746630146777655677888789607
Q T0547           431 AIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYF  510 (611)
Q Consensus       431 ~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~  510 (611)
                               ++++-+.+..++ .+..+..+|+.++.+-  .+..++.+++-||||...+-..+  .  +++++. |.  +
T Consensus       274 ---------~~~d~g~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~i~G~~C~~~D~l~~~~--~--lp~l~~-GD--~  334 (386)
T 2yxx_A          274 ---------VVVDGGMNVLIR-PALYSAYHRIFVLGKQ--GKEMRADVVGPLCESGDVIAYDR--E--LPEVEP-GD--I  334 (386)
T ss_dssp             ---------EEESCCTTTCCH-HHHTCCCCCEEETTCC--CCSEEEEEECSSSSTTCEEEEEE--E--ESCCCT-TC--E
T ss_pred             ---------EEECCCCCCCCC-HHHHCCCCCCEECCCC--CCEEEEEEEEECCCCCCEEEECC--C--CCCCCC-CC--E
T ss_conf             ---------998886545566-6663456773541788--98357999912889988896553--5--799998-99--9


Q ss_pred             EEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf             8886020699974775156789857999988996288751378878999987
Q T0547           511 LGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED  562 (611)
Q Consensus       511 lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~  562 (611)
                      |.|+.+|||+..++..+|.|..+.+|-|+  ++| .++-+.+-+|.+|+++.
T Consensus       335 l~~~~~GAY~~~~~~~Fn~~~~p~~v~~~--~~g-~~~~ir~~e~~~d~~~~  383 (386)
T 2yxx_A          335 IAVENAGAYGYTMSNNYNSTTRPAEVLVR--ENG-RISLIRRRETEMDIFKD  383 (386)
T ss_dssp             EEESSCSSSSGGGCCCTTTCCCCEEEEEC--TTS-CEEEEECCCCHHHHTTT
T ss_pred             EEECCCCHHHHHHCCCCCCCCCCCEEEEE--CCC-EEEEEECCCCHHHHHHH
T ss_conf             99969762236553777689988599996--699-09999837999999752


No 14 
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.45  E-value=1.8e-10  Score=97.17  Aligned_cols=207  Identities=11%  Similarity=0.136  Sum_probs=144.9

Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
Q ss_conf             79985898747999999999999999999970889872378745337878999999984666785166228899999996
Q T0547            42 GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMA  121 (611)
Q Consensus        42 ~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala  121 (611)
                      .+.||.+|.+.+.++++++++.+.....      .-.+++  -+|++..+.|.+...+.|+.   |+.|+|..|....++
T Consensus        43 dl~tP~lvid~~~l~~N~~~m~~~~~~~------g~~~rp--h~Kthks~~ia~~~l~~Ga~---~~~vat~~Ea~~l~~  111 (426)
T 3gwq_A           43 DVSLPAAVLYADRVEHNLKWMQAFVAEY------GVKLAP--HGKTTMAPQLFRRQLETGAW---GITLATAHQVRAAYH  111 (426)
T ss_dssp             CBCSSEEEEEHHHHHHHHHHHHHHHHHH------CCEECC--BCTTTCCHHHHHHHHHTTCC---CEEESSHHHHHHHHH
T ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHC------CCEEEE--EECCCCCHHHHHHHHHCCCC---EEEEECHHHHHHHHH
T ss_conf             5899749984999999999999988656------974999--83112789999999977998---699865999999997


Q ss_pred             CCCCCCCEEECCCCCHHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             489988178788989999999985-4235710489866889999999999984698622688885078877642204666
Q T0547           122 YNNEGAPITVNGFKDRELINIGFI-AAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGI  200 (611)
Q Consensus       122 ~g~~~~~Ii~nG~Kd~e~I~lAl~-a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~  200 (611)
                      +|.+. .++.++.-..+.++.+.. ....+.++.+.+||++.++.+.+.++. .++...+.|  +.++..          
T Consensus       112 ~Gi~~-illa~~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~-~~~~~~V~i--~vD~G~----------  177 (426)
T 3gwq_A          112 GGVSR-VLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS-VNKQLQVLL--ELGVPG----------  177 (426)
T ss_dssp             TTCCE-EEECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH-TTCCEEEEE--EECCTT----------
T ss_pred             CCCCC-EEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH-CCEEEEEEE--EECCCC----------
T ss_conf             49998-7883267898999999997317793499998189999999998875-782899987--514686----------


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCC
Q ss_conf             564788-9899999999998668-98734788863388767889999999999999999997179--9405872455655
Q T0547           201 NSKFGL-TSTELIEAVNLLKENK-LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA--KNLKAINLGGGLA  276 (611)
Q Consensus       201 ~SKFGl-~~~ei~~~i~~l~~~~-~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~--~~l~~LDIGGGlg  276 (611)
                       .+.|+ +.+++.++++.+.+.. .+ .+.|++.|.|+ ..+.....+..++..+.+..+.+...  .....+.-||..+
T Consensus       178 -~R~Gv~~~e~~~~l~~~i~~~~~~l-~l~Gi~~h~g~-~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~  254 (426)
T 3gwq_A          178 -GRTGVRDAAQRNAVLEAITRYPDTL-KLAGVELYEGV-LKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW  254 (426)
T ss_dssp             -SSSSBCSHHHHHHHHHHHHTSTTTE-EEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
T ss_conf             -4567667689999999997433775-99999874244-47835499999999999999999751177761354357765


No 15 
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.34  E-value=1.5e-10  Score=97.74  Aligned_cols=207  Identities=14%  Similarity=0.113  Sum_probs=137.7

Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
Q ss_conf             79985898747999999999999999999970889872378745337878999999984666785166228899999996
Q T0547            42 GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMA  121 (611)
Q Consensus        42 ~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala  121 (611)
                      .+.||.++.+.+.|+++++++.+.....        .-+....+|++..+.|++.+.+.|..   |+.|+|..|.....+
T Consensus        11 ~~dTP~lviDl~~l~~N~~~~~~~~~~~--------~~~~~~~vKah~~~~i~~~~~~~G~~---~~~vat~~Ea~~l~~   79 (376)
T 3llx_A           11 HPDTPYLLIDEAKLKSNINYLKQRVESL--------GSHLRPHLKTLRTLEAAGYLLDSKSA---PATVSTLAEAEAYAK   79 (376)
T ss_dssp             SSCSSEEEEEHHHHHHHHHHHHHHHHHT--------TCCBCCBCTTTCBHHHHHHHCSSTTS---CEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCHHHHHHHHHCCCC---EEEECCHHHHHHHHH
T ss_conf             4799669987999999999999864144--------98499996105789999999978999---899647999999997


Q ss_pred             CCCCCCCEEECC-C--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf             489988178788-9--8999999998542357104898668899999999999846986226888850788776422046
Q T0547           122 YNNEGAPITVNG-F--KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSG  198 (611)
Q Consensus       122 ~g~~~~~Ii~nG-~--Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tg  198 (611)
                      .|.+.. +++++ .  |.....  ++.  ..+..+.+.+||.+.++.+.+.++. .+...++.|.+  ++..        
T Consensus        80 ~g~~~~-l~~~~~~~~~~~~~~--~~~--~~~~~i~~~vds~~~~~~l~~~a~~-~~~~~~v~l~v--d~G~--------  143 (376)
T 3llx_A           80 AGYTDL-LYAVGIAPAKLKRVA--ALR--QQGINLHILLDNITQAQAVVDYAAE-FGQDFSVFIEI--DSDD--------  143 (376)
T ss_dssp             TTCCEE-EEEEECCGGGHHHHH--HHH--HTTCEEEEEECSHHHHHHHHHHHHH-HTCCCEEEEEB--CSSS--------
T ss_pred             CCCCCE-EEECCCCCHHHHHHH--HHH--HCCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEEEE--CCCC--------
T ss_conf             799966-992366807789999--875--1177599996879999999999987-59804776401--3556--------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6656478898999999999986689873478886338------8767889999999999999999997179940587245
Q T0547           199 GINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLG------SQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG  272 (611)
Q Consensus       199 g~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIG------SQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG  272 (611)
                         .+.|+..++..........  .+ .+.|++.|-|      ++.......++..+....+...++..|. .+..++.|
T Consensus       144 ---~R~G~~~~~~~~~~~~~~~--~~-~~~gl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g  216 (376)
T 3llx_A          144 ---HRGGIKPSDSKLLTIAKTL--GE-HFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGI-HCAITSVG  216 (376)
T ss_dssp             ---SSSCBCTTCTHHHHHHHHH--GG-GEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCEEEEC
T ss_pred             ---CCCCCCHHHHHHHHHHHHH--CC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEC
T ss_conf             ---7688792589999975430--13-33211131311024598899999999999999986424552499-86689993


Q ss_pred             CCCCCCCCCC
Q ss_conf             5655477777
Q T0547           273 GGLAVEYSQF  282 (611)
Q Consensus       273 GGlgV~Y~~~  282 (611)
                      |+....+...
T Consensus       217 gt~~~~~~~~  226 (376)
T 3llx_A          217 STPTAHFGED  226 (376)
T ss_dssp             CHHHHHHCSC
T ss_pred             CCHHHHHHHC
T ss_conf             8604545403


No 16 
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=98.40  E-value=0.00016  Score=52.22  Aligned_cols=195  Identities=12%  Similarity=0.088  Sum_probs=130.7

Q ss_pred             CCCCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             9985898-747999999999999999999970889872378745337----87899999998466678516622889999
Q T0547            43 YKGPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELL  117 (611)
Q Consensus        43 ~~tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~  117 (611)
                      ..++.++ .+.+-|+++++.+++..          ++-+++=-+|+|    -...|.+.+.++|..   +|=|++..|=.
T Consensus         4 ~~~r~~~eIdl~al~~N~~~ir~~~----------~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~---~faVa~~~EA~   70 (386)
T 1vfs_A            4 TPTRVYAEIDLDAVRANVRALRARA----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAA---WLGTATPEEAL   70 (386)
T ss_dssp             CCSSEEEEEEHHHHHHHHHHHHTTS----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHH
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEECCHHHHH
T ss_conf             9972899984999999999999768----------9984999994524647899999999986989---99983699999


Q ss_pred             HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             99964899881787889899999999854235710489866889999999999984698622688885078877642204
Q T0547           118 LAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKS  197 (611)
Q Consensus       118 ~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~T  197 (611)
                      ..+..+.+...+++++. +.++++.++.     ++..+++.+...++.+.+.++.. +....+-|.|+  +         
T Consensus        71 ~LR~~g~~~~ilvl~~~-~~~~~~~~~~-----~~~~~~i~s~~~l~~~~~~~~~~-~~~~~vhLkiD--T---------  132 (386)
T 1vfs_A           71 ELRAAGIQGRIMCWLWT-PGGPWREAIE-----TDIDVSVSGMWALDEVRAAARAA-GRTARIQLKAD--T---------  132 (386)
T ss_dssp             HHHHTTCCSEEEECCCC-TTCCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHH-TSCEEEEEEBC--S---------
T ss_pred             HHHHHCCCCCEEEEECC-CHHHHHHHHH-----HCCCCEECCHHHHHHHHHHHHHC-CCCCEEEEEEC--C---------
T ss_conf             99970899985898158-5056888654-----12230206599999999765513-67632899952--7---------


Q ss_pred             CCCCCCCCCCHHHHHHHHH---HHHHCCCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6665647889899999999---9986689873478886338876-7889999999999999999997179940587245
Q T0547           198 GGINSKFGLTSTELIEAVN---LLKENKLLEQFTMIHFHLGSQI-TEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG  272 (611)
Q Consensus       198 gg~~SKFGl~~~ei~~~i~---~l~~~~~l~~L~gLHfHIGSQI-~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG  272 (611)
                      |  -.++|+..+|+.++++   .++..+.+ .+.|+=.|..+-- .+.......+++..++...+.+.+.. ...+-++
T Consensus       133 G--M~RlG~~~~e~~~l~~~~~~~~~~~~l-~~~gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~-~~~~h~a  207 (386)
T 1vfs_A          133 G--LGRNGCQPADWAELVGAAVAAQAEGTV-QVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVD-PEVRHIA  207 (386)
T ss_dssp             S--CCSSSBCHHHHHHHHHHHHHHHHTTSE-EEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCC-CSEEEEE
T ss_pred             C--CCCCCCCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEC
T ss_conf             7--775673713789998876654216876-4689986023344320277899999999999999872788-6056631


No 17 
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.22  E-value=0.0006  Score=47.87  Aligned_cols=201  Identities=11%  Similarity=0.069  Sum_probs=138.0

Q ss_pred             CCCCCEEEECHH---HHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             799858987479---9999999999999999997088-987237874533787899999998466678516622889999
Q T0547            42 GYKGPLLLRFPH---LIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELL  117 (611)
Q Consensus        42 ~~~tPllvrf~d---il~~ri~~l~~aF~~A~~~~~Y-~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~  117 (611)
                      +..+|..+.++.   -|++++.++.+.-..|....|. ++..+.+=-+|.-+ ...+..+.+.|..   +|=++-..|..
T Consensus         9 ~~~~~~~~~d~~~~~~i~~nl~~v~~ri~~a~~~agR~p~~v~L~aVvK~h~-~~~va~a~~~G~~---~fg~a~vqEa~   84 (282)
T 3cpg_A            9 HKNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRD-IGEIMAAIDAGVR---MIGENRPQEVT   84 (282)
T ss_dssp             -CCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCC-HHHHHHHHHTTCC---CEEESCHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHHCCCC---CCCCCHHHHHH
T ss_conf             5443100058788999999999999999999998199901169999978989-9999999986982---11100499999


Q ss_pred             HHHH-------------------CCCCCCCEEEC--CCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf             9996-------------------48998817878--89899999999854235710489866889999999999984698
Q T0547           118 LAMA-------------------YNNEGAPITVN--GFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP  176 (611)
Q Consensus       118 ~ala-------------------~g~~~~~Ii~n--G~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v  176 (611)
                      ....                   .+.....|.++  |.-....+..+.  .  ....+..|||++.++.+.+.+.. .++
T Consensus        85 ~k~~~l~~~~~~a~~~~~~~lr~~~~~~~~i~~~~ig~~q~~~~~~~~--~--~~~~~~sVds~~~a~~l~~~a~~-~~~  159 (282)
T 3cpg_A           85 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVL--P--VVDTIESVDSIDLAEKISRRAVA-RGI  159 (282)
T ss_dssp             HHHHHHHHHHHHTTEEECCC------CCEEECEEECSCCCGGGHHHHT--T--TCSEEEEECCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH--H--HCCCCCCCCCHHHHHHHHHHHHH-CCC
T ss_conf             999976664322100000000012345760576047746678999998--7--45806556989999999999997-699


Q ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             62268888507887764220466656478898999999999986689873478886338876788999999999999999
Q T0547           177 KPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYT  256 (611)
Q Consensus       177 ~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~  256 (611)
                      +..|-|-|+           ||+..+++|.+..++.++++.+.+.+.+ .+.||=.|.++ -.+....+..+++..+++.
T Consensus       160 ~~~V~l~Vd-----------tG~~~~~~~~~~~e~~~~~~~i~~~~~l-~~~GlmTH~a~-add~~~~~~~f~~l~~~~~  226 (282)
T 3cpg_A          160 TVGVLLEVN-----------ESGEESKSGCDPAHAIRIAQKIGTLDGI-ELQGLMTIGAH-VHDETVIRRGFSHLRKTRD  226 (282)
T ss_dssp             CEEEEEEBC-----------CSSCTTSSSBCGGGHHHHHHHHHTCTTE-EEEEEECCCCC-SSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEE-----------CCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_conf             853899980-----------4898766899999999999999977999-85458850487-7885779999999999999


Q ss_pred             HHHHCCCC
Q ss_conf             99971799
Q T0547           257 ELRKMGAK  264 (611)
Q Consensus       257 eL~~~g~~  264 (611)
                      .+.+.+.+
T Consensus       227 ~l~~~~~~  234 (282)
T 3cpg_A          227 LILASGEP  234 (282)
T ss_dssp             HHHHHCCT
T ss_pred             HHHHHCCC
T ss_conf             99981899


No 18 
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=98.22  E-value=0.0006  Score=47.88  Aligned_cols=194  Identities=14%  Similarity=0.151  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHH---HHH-CCCCCCCE
Q ss_conf             999999999999999997088987-2378745337878999999984666785166228899999---996-48998817
Q T0547            55 IQKQIENIYGNFNKARKEFGYKGG-FNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLL---AMA-YNNEGAPI  129 (611)
Q Consensus        55 l~~ri~~l~~aF~~A~~~~~Y~g~-y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~---ala-~g~~~~~I  129 (611)
                      |.+|+.++.+.-..|.++.|.... .+.+ ||-=++....++++.++|... ||=-  =..|+..   .+. ...+.-+-
T Consensus         4 i~~nl~~I~~~I~~a~~~~gR~~~~V~Lv-aVSK~~~~~~I~~a~~~G~r~-fGEN--rvQE~~~K~~~l~~~~~~~i~W   79 (234)
T 1w8g_A            4 IAHNLAQVRDKISAAATRCGRSPEEITLL-AVSKTKPASAIAEAIDAGQRQ-FGEN--YVQEGVDKIRHFQELGVTGLEW   79 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCGGGCEEE-EECTTSCHHHHHHHHHTTCCE-EEES--SHHHHHHHHHHHHHTTCCSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEECCCCHHHHHHHHHCCCCH-HHCC--CHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999999999809997886999-997888999999999879952-1006--3477888889886530457233


Q ss_pred             EECCC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             87889-89999999985423571048986688999999999998469862268888507887764220466656478898
Q T0547           130 TVNGF-KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTS  208 (611)
Q Consensus       130 i~nG~-Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~  208 (611)
                      .|=|. -+.. ++.++.  .  +.++=.|||..-++.|.+.+.. .+..+.+.|-||.           +++.+|.|+++
T Consensus        80 HfIG~LQsNK-vk~iv~--~--~~~IhSvDs~kla~~l~~~~~~-~~~~~~vliQVNi-----------s~E~~K~G~~p  142 (234)
T 1w8g_A           80 HFIGPLQSNK-SRLVAE--H--FDWCHTIDRLRIATRLNDQRPA-ELPPLNVLIQINI-----------SDENSKSGIQL  142 (234)
T ss_dssp             EECSCCCGGG-HHHHHH--H--CSEEEEECSHHHHHHHHHHSCT-TSCCEEEEEEECC-----------SCTTCCCSBCG
T ss_pred             EEECCCHHHH-HHHHCC--H--HHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEEE-----------CCCCCCCCCCC
T ss_conf             2213430322-110000--2--3356665428899999876564-0676117889830-----------46656645221


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             9999999999866898734788863388767889999999999999999997179940587245
Q T0547           209 TELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG  272 (611)
Q Consensus       209 ~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG  272 (611)
                      +++.++++.+.+.+.+ .+.||=. |++.-.|.......+++....+.++...+ +.+..|-+|
T Consensus       143 ~e~~~~~~~~~~~~~l-~~~GLMt-i~~~~~d~~~~~~~f~~l~~~~~~l~~~~-~~~~~LSMG  203 (234)
T 1w8g_A          143 AELDELAAAVAELPRL-RLRGLMA-IPAPESEYVRQFEVARQMAVAFAGLKTRY-PHIDTLSLG  203 (234)
T ss_dssp             GGHHHHHHHHHTCTTE-EEEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHHHHS-TTCCEEECC
T ss_pred             CCHHHHHHHHCCCCCE-EEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCEECCH
T ss_conf             1078899875137856-7878732-37873037887756999999999987237-998977673


No 19 
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=98.15  E-value=0.00055  Score=48.15  Aligned_cols=182  Identities=9%  Similarity=0.110  Sum_probs=122.7

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             98747999999999999999999970889872378745337----87899999998466678516622889999999648
Q T0547            48 LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYN  123 (611)
Q Consensus        48 lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g  123 (611)
                      .+.+.+-|+++++.+++.-          ++-+..-.+|+|    -...|.+.+.+.|..   +|=|++..|-......|
T Consensus        14 a~Idl~al~~N~~~lr~~~----------~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~---~faVa~~~EA~~LR~~g   80 (384)
T 1xfc_A           14 AMVDLGAIEHNVRVLREHA----------GHAQLMAVVKADGYGHGATRVAQTALGAGAA---ELGVATVDEALALRADG   80 (384)
T ss_dssp             EEEEHHHHHHHHHHHHHHH----------TTSEEEEECHHHHHTTCHHHHHHHHHHTTCC---EEEESCHHHHHHHHHTT
T ss_pred             EEECHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHCC
T ss_conf             9982999999999999768----------9983999992503637889999999977969---99992799999999709


Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99881787889899999999854235710489866889999999999984698622688885078877642204666564
Q T0547           124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSK  203 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SK  203 (611)
                      .....+++.+. +.++++.+..     .++.+++.+...++.+.+.+++ .+..+.+-|-|  ++         |  -.+
T Consensus        81 i~~~Il~l~~~-~~~~~~~~~~-----~~~~~~i~s~~~~~~l~~~~~~-~~~~~~vhLki--DT---------G--M~R  140 (384)
T 1xfc_A           81 ITAPVLAWLHP-PGIDFGPALL-----ADVQVAVSSLRQLDELLHAVRR-TGRTATVTVKV--DT---------G--LNR  140 (384)
T ss_dssp             CCSCEEECCCC-TTCCCHHHHH-----TTCEEEECSHHHHHHHHHHHHH-HCCCEEEEEEB--CS---------S--CCS
T ss_pred             CCCCEEEEECC-CHHHHHHHHH-----HCCCEEECCHHHHHHHHHHHHH-HHCCCCEEEEE--CC---------C--CCC
T ss_conf             98866998466-2778999875-----1320133458999998988875-31342147897--46---------7--776


Q ss_pred             CCCCHHHHHHHHHHHH---HCCCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7889899999999998---6689873478886338876-7889999999999999999997179
Q T0547           204 FGLTSTELIEAVNLLK---ENKLLEQFTMIHFHLGSQI-TEIHPLKKALNEAGNIYTELRKMGA  263 (611)
Q Consensus       204 FGl~~~ei~~~i~~l~---~~~~l~~L~gLHfHIGSQI-~di~~~~~ai~ea~~ly~eL~~~g~  263 (611)
                      +|+..+++.++++.++   ..+.+ .+.|+-.|..+-- .+.......++...++...+.+.+.
T Consensus       141 lG~~~~e~~~~~~~~~~~~~~~~l-~l~Gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~  203 (384)
T 1xfc_A          141 NGVGPAQFPAMLTALRQAMAEDAV-RLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGV  203 (384)
T ss_dssp             SSBCTTTHHHHHHHHHHHHHTTSE-EEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             786806778888888877642155-510124335403324305569999999999987664078


No 20 
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=98.05  E-value=0.00063  Score=47.71  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=107.5

Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             898747999999999999999999970889872378745337----8789999999846667851662288999999964
Q T0547            47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY  122 (611)
Q Consensus        47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~  122 (611)
                      -+-.+.+-|+++++.+++.-          ++-+.+-.+|+|    -...|.+.+.+.|..   +|=|++-.|-...+.+
T Consensus        11 ~leIdl~al~~N~~~ik~~~----------~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~i~Ea~~LR~~   77 (380)
T 3co8_A           11 RIEFSKSSLAYNVQYTKQVS----------GAKTLWLAVKSNAYGHGLLQVSKIARECGVD---GLAVSVLDEGIAIRQA   77 (380)
T ss_dssp             EEEECHHHHHHHHHHHHHHH----------CCSEEEEECHHHHHTTCHHHHHHHHGGGTCC---EEEESSHHHHHHHHHT
T ss_pred             EEEEEHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHC
T ss_conf             99997999999999999657----------9982999997424647889999999986979---9999089999999973


Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547           123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS  202 (611)
Q Consensus       123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S  202 (611)
                      |.....++++++ +.+++..+..     +++..++.+.+.++.+.+.++   +.+  +-+=++.++         |  -.
T Consensus        78 g~~~~Ilvl~~~-~~~~~~~~~~-----~~i~~~i~s~~~l~~~~~~~~---~~~--~~vhLkiDT---------G--M~  135 (380)
T 3co8_A           78 GIDDFILILGPI-DVKYAPIASK-----YHFLTTVSSLDWLKSADKILG---KEK--LSVNLAVDT---------G--MN  135 (380)
T ss_dssp             TCCCCEEECSCC-CGGGHHHHHH-----TTCEEEECCHHHHHHHHHHCT---TCC--EEEEEEBCS---------S--SC
T ss_pred             CCCCCEEEECCC-CHHHHHHHHH-----HCEEEEECCHHHHHHHHHHHC---CCC--CCEEEEEEC---------C--CC
T ss_conf             999837862686-7666567765-----056422024999999998631---588--615689826---------8--88


Q ss_pred             CCCCCHH-HHHHHHHHHHHCC-CCCCEEEEEEECCCC
Q ss_conf             4788989-9999999998668-987347888633887
Q T0547           203 KFGLTST-ELIEAVNLLKENK-LLEQFTMIHFHLGSQ  237 (611)
Q Consensus       203 KFGl~~~-ei~~~i~~l~~~~-~l~~L~gLHfHIGSQ  237 (611)
                      ++|+..+ ++.++++.+++.. .+ .+.|+-.|..+-
T Consensus       136 RlG~~~~~~~~~~~~~l~~~~~~l-~v~Gi~THfa~a  171 (380)
T 3co8_A          136 RIGVRSKKDLKDEIEFLQEHSDHF-SYDGIFTHFASS  171 (380)
T ss_dssp             SSSBCSHHHHHHHHHHHHHCTTTE-EEEEEECCCC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCC
T ss_conf             667673366899999976511354-402587135666


No 21 
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=98.01  E-value=0.0015  Score=44.97  Aligned_cols=185  Identities=14%  Similarity=0.128  Sum_probs=128.9

Q ss_pred             CCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf             85898-747999999999999999999970889872378745337----8789999999846667851662288999999
Q T0547            45 GPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLA  119 (611)
Q Consensus        45 tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~a  119 (611)
                      -|.++ .+.+-|+++++.+++...         ++-+.+--+|+|    -...|.+.+.+.|..   +|=|++..|-...
T Consensus        10 r~t~~eIdl~al~~Ni~~i~~~~~---------~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~i~EA~~L   77 (391)
T 2vd8_A           10 RDTWVEVDLDAIYNNVTHIXEFIP---------SDVEIFAVVKGNAYGHDYVPVAXIALEAGAT---RLAVAFLDEALVL   77 (391)
T ss_dssp             SSCEEEEEHHHHHHHHHHHHHHSC---------TTCEEEEECHHHHHTTCHHHHHHHHHHTTCC---EEEESSHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEEEEECCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHH
T ss_conf             988999859999999999997479---------9987999994603658879999999987989---9999169999999


Q ss_pred             HHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf             96489988178788989999999985423571048986688999999999998469862268888507887764220466
Q T0547           120 MAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGG  199 (611)
Q Consensus       120 la~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg  199 (611)
                      +.+|.....+++++. +.++++.+.     .+++.+++-+.+++..+.+.++  .+.  .+-+-++.++.-         
T Consensus        78 R~~gi~~~Ilvl~~~-~~~~~~~~~-----~~~~~~~i~~~~~l~~~~~~~~--~~~--~~~vhlkiDTGM---------  138 (391)
T 2vd8_A           78 RRAGITAPILVLGPS-PPRDINVAA-----ENDVALTVFQXEWVDEAIXLWD--GSS--TMXYHINFDSGM---------  138 (391)
T ss_dssp             HHTTCCSCEEECSCC-CGGGHHHHH-----HTTEEEECCCHHHHHHHHHHCC--SSC--CEEEEEEBCSSC---------
T ss_pred             HHCCCCCCEEEECCC-CHHHHHHHH-----HHCCCCEECCHHHHHHHHHHHH--CCC--CEEEEEEECCCC---------
T ss_conf             973999988997288-826667877-----5146531214889999999861--479--648999952899---------


Q ss_pred             CCCCCCCCHH-HHHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6564788989-9999999998668987347888633887-67889999999999999999997179
Q T0547           200 INSKFGLTST-ELIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRKMGA  263 (611)
Q Consensus       200 ~~SKFGl~~~-ei~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~~g~  263 (611)
                        +++|+... ++..+++.++..+.+ .+.|+-.|..+- ..+.......+++..++...+.+.+.
T Consensus       139 --~RlG~~~~~e~~~~~~~l~~~~~l-~l~Gi~SH~a~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~  201 (391)
T 2vd8_A          139 --GRIGIRERXELXGFLXSLEGAPFL-ELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGV  201 (391)
T ss_dssp             --CSSSBCCHHHHHHHHHHHTTCTTE-EEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --CCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             --858888289999999999728996-640224213768873135678899999999999986189


No 22 
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=97.95  E-value=0.00038  Score=49.38  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=112.4

Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             8987479999999999999999999708898723787453378----789999999846667851662288999999964
Q T0547            47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY  122 (611)
Q Consensus        47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~  122 (611)
                      ....+.+-|+++++.+++...          +-+.+--||+|-    ...|.+.+.+.|..   +|=|++..|-......
T Consensus        22 ~~~Idl~al~~N~~~i~~~~~----------~~~i~aVVKanAYGhG~~~va~~l~~~Gv~---~faVa~i~Ea~~LR~~   88 (376)
T 3kw3_A           22 IATIDVRAIVANYRTLAQHVA----------PTECSAVVKANAYGLGAHKIAPALYQAGCR---TFFVAQIEEALQLKAV   88 (376)
T ss_dssp             EEEECHHHHHHHHHHHHHHHT----------TSEECEECHHHHHTTCHHHHHHHHHHTTCC---EEEESSHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHHCC----------CCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHH
T ss_conf             999859999999999997579----------983999996652516499999999986969---9999388999999972


Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547           123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS  202 (611)
Q Consensus       123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S  202 (611)
                      +.+...|+..+.-..++.+.+..     .+...++.+.+.++.+.+.++.+ +....+-  ++.++         |  -.
T Consensus        89 g~~~~illl~~~~~~~~~~~~~~-----~~~~~~i~s~~~l~~l~~~a~~~-~~~~~vh--LkvDT---------G--M~  149 (376)
T 3kw3_A           89 LPENVMIALLNGFPHKAEEFVAQ-----SGIIPLLNSWSTIEDWQTLCQKK-NKKFPAI--IQVDT---------N--MS  149 (376)
T ss_dssp             SCSSCEEEETTCCCTTCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHH-TCCCEEE--EEBCS---------S--CC
T ss_pred             CCCCCHHHHCCCCCHHHHHHHHH-----CCCCCEECCHHHHHHHHHHHHHC-CCCEEEE--EEECC---------C--CC
T ss_conf             78530677617897789999874-----14564106599999999999972-8970599--99658---------8--87


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             47889899999999998668987347888633887
Q T0547           203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ  237 (611)
Q Consensus       203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ  237 (611)
                      ++|+..+|+.++++.++..+.+ .+.|+-.|..+-
T Consensus       150 RlG~~~~e~~~~i~~~~~~~~l-~i~Gi~THfa~a  183 (376)
T 3kw3_A          150 RLGLDKKELQKLIKNPTIFEKA-EIKYILSHLANG  183 (376)
T ss_dssp             SSSBCHHHHHHHHHCCTHHHHS-EEEEEECCCSST
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCC
T ss_conf             5677815678999887641465-268897201233


No 23 
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=97.91  E-value=0.0016  Score=44.76  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=111.8

Q ss_pred             CCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf             85898-747999999999999999999970889872378745337----8789999999846667851662288999999
Q T0547            45 GPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLA  119 (611)
Q Consensus        45 tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~a  119 (611)
                      -|.++ .+.+-|+++++.+++...         ++-+.+--+|+|    -...|++.+.+.|..   +|=|++-.|-...
T Consensus         6 r~tw~eIdl~al~~N~~~i~~~~~---------~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~---~faVa~i~EA~~L   73 (388)
T 1bd0_A            6 RDTWAEVDLDAIYDNVENLRRLLP---------DDTHIMAVVKANAYGHGDVQVARTALEAGAS---RLAVAFLDEALAL   73 (388)
T ss_dssp             SSEEEEEEHHHHHHHHHHHHHHSC---------TTCEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEEEEECCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHH
T ss_conf             878999969999999999997489---------9997999981603648879999999986979---9997689999999


Q ss_pred             HHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf             96489988178788989999999985423571048986688999999999998469862268888507887764220466
Q T0547           120 MAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGG  199 (611)
Q Consensus       120 la~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg  199 (611)
                      +.+|.+...+++++. ..++++.+..     +++.+++.+.+.+..+...++  .+..  +-+-++.++         |-
T Consensus        74 R~~gi~~~Ilvl~~~-~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~--~~~~--~~vhLkiDT---------GM  134 (388)
T 1bd0_A           74 REKGIEAPILVLGAS-RPADAALAAQ-----QRIALTVFRSDWLEEASALYS--GPFP--IHFHLKMDT---------GM  134 (388)
T ss_dssp             HHTTCCSCEEECSCC-CGGGHHHHHH-----TTEEEEECCHHHHHHHHHHCC--CSSC--EEEEEEBCS---------SS
T ss_pred             HHCCCCCCEEEECCC-CHHHHHHHHC-----CCCCCEEEHHHHHHHHHHHHC--CCCC--EEEEEEECC---------CC
T ss_conf             971899848996278-7688776413-----454323404998876765541--4774--489999816---------88


Q ss_pred             CCCCCCCCHHH-HHHHHHHHHHCCCCCCEEEEEEECCCCC-CCHHH
Q ss_conf             65647889899-9999999986689873478886338876-78899
Q T0547           200 INSKFGLTSTE-LIEAVNLLKENKLLEQFTMIHFHLGSQI-TEIHP  243 (611)
Q Consensus       200 ~~SKFGl~~~e-i~~~i~~l~~~~~l~~L~gLHfHIGSQI-~di~~  243 (611)
                        .++|+...| +..+++.++..+.+ .+.|+..|..+-- .+...
T Consensus       135 --~RlG~~~~e~~~~~~~~~~~~~~l-~l~Gi~tHla~ad~~~~~~  177 (388)
T 1bd0_A          135 --GRLGVKDEEETKRIVALIERHPHF-VLEGLYTHFATADEVNTDY  177 (388)
T ss_dssp             --CSSSBCSHHHHHHHHHHHHHSTTE-EEEEEECCCSSTTSSCCHH
T ss_pred             --CCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCHH
T ss_conf             --756865477899999999858896-0468884256777777189


No 24 
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=97.89  E-value=0.0023  Score=43.45  Aligned_cols=154  Identities=15%  Similarity=0.145  Sum_probs=108.6

Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             898747999999999999999999970889872378745337----8789999999846667851662288999999964
Q T0547            47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY  122 (611)
Q Consensus        47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~  122 (611)
                      -...+.+-|+++++.+++. .         | -+.+--+|+|    -...|.+.+ +.|..   +|=|++..|-...+.+
T Consensus         5 ~~eIdl~al~~N~~~lr~~-~---------~-~ki~aVVKanAYGhG~~~ia~~L-~~g~~---~faVa~~~Ea~~LR~~   69 (357)
T 1rcq_A            5 RALIDLQALRHNYRLAREA-T---------G-ARALAVIKADAYGHGAVRCAEAL-AAEAD---GFAVACIEEGLELREA   69 (357)
T ss_dssp             EEEEEHHHHHHHHHHHHHH-H---------C-SEEEEECHHHHHTTCHHHHHHHH-TTTCS---EEEESSHHHHHHHHHT
T ss_pred             EEEEEHHHHHHHHHHHHCC-C---------C-CCEEEEEEECCCCCCHHHHHHHH-HHCCC---EEEEEEHHHHHHHHHH
T ss_conf             9998499999999999706-6---------9-94999996653538799999999-95699---7999899999999970


Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547           123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS  202 (611)
Q Consensus       123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S  202 (611)
                      +.....++++|.-+.++.+.+..     +++.+++.+...++.+.+.+   .+....+-  ++.+         ||  -+
T Consensus        70 g~~~~il~l~~~~~~~~~~~~~~-----~~i~~~i~s~~~~~~l~~~~---~~~~~~vh--LkvD---------TG--M~  128 (357)
T 1rcq_A           70 GIRQPILLLEGFFEASELELIVA-----HDFWCVVHCAWQLEAIERAS---LARPLNVW--LKMD---------SG--MH  128 (357)
T ss_dssp             TCCSCEEETTCCSSGGGHHHHHH-----TTEEEEECSHHHHHHHHHCC---CSSCEEEE--EEBC---------SS--SC
T ss_pred             CCCCCEECCCCCCCHHHHHHHHH-----HCCCCCCCHHHHHHHHHHHC---CCCCEEEE--EEEC---------CC--CC
T ss_conf             99642011001355778898886-----31465658799999999746---36643699--9972---------67--64


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             47889899999999998668987347888633887
Q T0547           203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ  237 (611)
Q Consensus       203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ  237 (611)
                      ++|+..+|+.++++.++..+.+ .+.|+..|..|-
T Consensus       129 RlG~~~~e~~~~~~~~~~~~~~-~~~gi~tH~a~a  162 (357)
T 1rcq_A          129 RVGFFPEDFRAAHERLRASGKV-AKIVMMSHFSRA  162 (357)
T ss_dssp             SSSBCHHHHHHHHHHHHHTTCE-EEEEEECCCSST
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC-CCEEEEEEECCC
T ss_conf             3356837888889998641454-403456530335


No 25 
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=97.88  E-value=0.0024  Score=43.32  Aligned_cols=179  Identities=17%  Similarity=0.174  Sum_probs=111.5

Q ss_pred             CCCCE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHC-CCCCCEEEECCHHHH
Q ss_conf             99858-98747999999999999999999970889872378745337----8789999999846-667851662288999
Q T0547            43 YKGPL-LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLG-KDYNYGLEAGSKAEL  116 (611)
Q Consensus        43 ~~tPl-lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G-~~~~~GlEv~Sk~EL  116 (611)
                      ..-|. +-.+.+-|+++++.+++.-         + .-+++-.+|+|    -...|.+.+.+.| .+   +|=|++..|-
T Consensus         6 ~~R~t~leIdl~al~~N~~~ir~~~---------~-~~~i~aVVKAnAYGhG~~~va~~l~~~gg~d---~faVa~ieEA   72 (395)
T 3hur_A            6 IHRPTWVSVDLDAAAHNLQEIREWT---------K-AKKVYAVLKADGYGLGAIPLAKAFQETASAD---ALIVSNLDEA   72 (395)
T ss_dssp             CSCCEEEEEEHHHHHHHHHHHHHHH---------T-CSEEEEECCHHHHHTCHHHHHHHHHHTTCCS---EEEESCHHHH
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHC---------C-CCEEEEEEEECCCCCCHHHHHHHHHHHCCCC---EEEEEEHHHH
T ss_conf             8899899985999999999999568---------9-9859999956226588899999999878999---9999289999


Q ss_pred             HHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf             99996489988178788989999999985423571048986688999999999998469862268888507887764220
Q T0547           117 LLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAK  196 (611)
Q Consensus       117 ~~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~  196 (611)
                      ...+..+.....+++++. +.++++.+..     +++.+++-+.+.|+.+.+     .+...++-  ++.+         
T Consensus        73 ~~LR~~g~~~~Ilvl~~~-~~~e~~~~~~-----~~i~~~i~~~~~l~~~~~-----~~~~~~vh--LkiD---------  130 (395)
T 3hur_A           73 LELRQADLTLPIWVLGAW-DYSDLKLFID-----HDIVITIPSLAWLQNLPD-----FEGTLKVS--LAID---------  130 (395)
T ss_dssp             HHHHHTTCCSCEEESSCC-CGGGHHHHHH-----TTEEEEECCHHHHHTCCC-----CSSCEEEE--EEBC---------
T ss_pred             HHHHHCCCCCEEEEECCC-CHHHHHHHHH-----HHHCCCCCHHHHHHHHHH-----CCCCCEEE--EEEE---------
T ss_conf             999966999839983789-9799999987-----443233226887545553-----16873599--9980---------


Q ss_pred             CCCCCCCCCCCHHHHHHHH-HHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4666564788989999999-99986689873478886338876788999999999999999999
Q T0547           197 SGGINSKFGLTSTELIEAV-NLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR  259 (611)
Q Consensus       197 Tgg~~SKFGl~~~ei~~~i-~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~  259 (611)
                      ||  -.++|+...+..+.+ +.++..+.+ .+.|+..|..|--...........+..+.+.+..
T Consensus       131 TG--M~RlG~~~~e~~~~~~~~~~~~~~l-~l~Gi~SHla~ad~~~~~~~~~~~~~~~~f~~~~  191 (395)
T 3hur_A          131 TG--MTRIGFDKADEISAAKKIIDKNPQL-DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELT  191 (395)
T ss_dssp             CS--SCSSSBCCHHHHHHHHHHHHHCTTE-EEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHH
T ss_pred             CC--CCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             78--8878888588899999999857886-4899988526666345401689999999999999


No 26 
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=97.87  E-value=0.0018  Score=44.26  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             CCCCE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             99858-98747999999999999999999970889872378745337----87899999998466678516622889999
Q T0547            43 YKGPL-LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELL  117 (611)
Q Consensus        43 ~~tPl-lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~  117 (611)
                      +.-|- +..+.+-|+++++.+++..         +..-+++=-+|+|    -...|.+.+.+.|..   +|=|++-.|-.
T Consensus         5 ~~r~~~leIdl~al~~N~~~i~~~~---------~~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~---~faVa~i~EA~   72 (371)
T 3e5p_A            5 WHRPTRLHIDTQAITENVQKECQRL---------PEGTALFAVVKANGYGHGAVESAKAAKKGGAT---GFCVALLDEAI   72 (371)
T ss_dssp             TTSSCEEEECHHHHHHHHHHHHHSS---------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCC---CEEESSHHHHH
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHC---------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHH
T ss_conf             5789899996999999999999857---------99897999995534647889999999987979---99981999999


Q ss_pred             HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             99964899881787889899999999854235710489866889999999999984698622688885078877642204
Q T0547           118 LAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKS  197 (611)
Q Consensus       118 ~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~T  197 (611)
                      ....+|.....+++++. +.++++.++.     +++.+++-|.+.++.+++.+..+.+.+.++-|-+  ++         
T Consensus        73 ~LR~~g~~~~ilvl~~~-~~~~~~~~~~-----~~l~~~i~s~~~l~~~~~~~a~~~~~~~~vhlki--DT---------  135 (371)
T 3e5p_A           73 ELREAGVQDPILILSVV-DLAYVPLLIQ-----YDLSVTVATQEWLEAALQQLTPESNTPLRVHLKV--DT---------  135 (371)
T ss_dssp             HHHTTTCCSCEEEEEEC-CGGGHHHHHH-----HTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEB--CS---------
T ss_pred             HHHHHCCCCCEEEEECC-CHHHHHHHHH-----CCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEE--EC---------
T ss_conf             99971899975776057-8789999986-----4981797358998888998888539944799998--27---------


Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf             666564788-989999999999866898734788863388767
Q T0547           198 GGINSKFGL-TSTELIEAVNLLKENKLLEQFTMIHFHLGSQIT  239 (611)
Q Consensus       198 gg~~SKFGl-~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~  239 (611)
                      |  -.++|+ +.+++..+++.++..+.+ .+.|+..|..|--.
T Consensus       136 G--M~RlG~~~~ee~~~~~~~~~~~~~~-~~~gi~th~~~~~~  175 (371)
T 3e5p_A          136 G--MGRIGFLTPEETKQAVRFVQSHKEF-LWEGIFTHFSTADE  175 (371)
T ss_dssp             S--SCSSSBCSSHHHHHHHHHHHHSTTB-CCCEEECCCSCTTS
T ss_pred             C--CCCCCCCCHHHHHHHHHHHHHHHCE-ECCEEEEECCCCCC
T ss_conf             9--8737987378889999998762061-00202221014343


No 27 
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=97.51  E-value=0.0033  Score=42.34  Aligned_cols=160  Identities=13%  Similarity=0.113  Sum_probs=109.5

Q ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf             9985898747999999999999999999970889872378745337----878999999984666785166228899999
Q T0547            43 YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLL  118 (611)
Q Consensus        43 ~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~  118 (611)
                      .....+..+.+-|+++++.+++- .         +.-+.+--+|+|    -...|.+.+.+.+     +|=|++-.|=..
T Consensus        21 ~~~a~~~Idl~al~~N~~~ir~~-~---------~~~~i~aVVKAnAYGhG~~~va~~l~~~~-----~faVa~i~EA~~   85 (379)
T 2rjg_A           21 MQAATVVINRRALRHNLQRLREL-A---------PASKMVAVVKANAYGHGLLETARTLPDAD-----AFGVARLEEALR   85 (379)
T ss_dssp             CCCSEEEEEHHHHHHHHHHHHHH-S---------TTSEEEEECHHHHHTTCHHHHHHHCTTCS-----EEEESSHHHHHH
T ss_pred             CCCEEEEECHHHHHHHHHHHHHH-C---------CCCEEEEEEEECCCCCCHHHHHHHHHHCC-----EEEEEEHHHHHH
T ss_conf             67669999799999999999966-8---------99869999956425487899999997099-----899959999999


Q ss_pred             HHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf             99648998817878898999999998542357104898668899999999999846986226888850788776422046
Q T0547           119 AMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSG  198 (611)
Q Consensus       119 ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tg  198 (611)
                      .+.++.....+++.|.-+.+++..+..     +++.+++-|...++.+.+..   .+....+-  ++.+         ||
T Consensus        86 LR~~gi~~~ilil~~~~~~~~~~~~~~-----~~i~~~i~s~~~l~~l~~~~---~~~~~~vh--LkvD---------TG  146 (379)
T 2rjg_A           86 LRAGGITKPVLLLEGFFDARDLPTISA-----QHFHTAVHNEEQLAALEEAS---LDEPVTVW--MKLD---------TG  146 (379)
T ss_dssp             HHHTTCCSCEEETTCCSCGGGHHHHHH-----TTEEEEECSHHHHHHHHHCC---CSSCBCEE--EEBC---------SS
T ss_pred             HHHHCCCCCEEECCCCCCHHHHHHHHH-----CCCCEEECCHHHHHHHHHHH---CCCCEEEE--EEEE---------CC
T ss_conf             997389987220346788788999997-----37715757899999999861---38980799--9980---------88


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf             6656478898999999999986689873478886338876
Q T0547           199 GINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQI  238 (611)
Q Consensus       199 g~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI  238 (611)
                        -.++|+..+|+..++++++..+....+.|+--|..+--
T Consensus       147 --M~RlG~~~~e~~~~~~~~~~~~~~l~~~Gi~THfa~ad  184 (379)
T 2rjg_A          147 --MHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARAD  184 (379)
T ss_dssp             --CCSSSBCHHHHHHHHHHHTTCSSBCSSCEEECCCSSTT
T ss_pred             --CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             --88788883055789999987225442125884657765


No 28 
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=97.41  E-value=0.01  Score=38.51  Aligned_cols=179  Identities=14%  Similarity=0.092  Sum_probs=115.3

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             98747999999999999999999970889872378745337----87899999998466678516622889999999648
Q T0547            48 LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYN  123 (611)
Q Consensus        48 lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g  123 (611)
                      .-.+-+-|+++++.+++- .         ++-+.+=-+|+|    -...|.+.+.+.|.+   +|=|++-.|-...+.+|
T Consensus         6 ~~IdL~ai~~N~~~ir~~-~---------~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~~~EA~~LR~~g   72 (361)
T 2dy3_A            6 TKIDLDAIAHNTRVLKQM-A---------GPAKLMAVVKANAYNHGVEKVAPVIAAHGAD---AFGVATLAEAMQLRDIG   72 (361)
T ss_dssp             EEECHHHHHHHHHHHHHH-H---------TTSEEEEECHHHHHHTCHHHHHHHHHHTTCC---EEEESSHHHHHHHHHTT
T ss_pred             EEEEHHHHHHHHHHHHHH-C---------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHHC
T ss_conf             998799999999999845-7---------9983999996553647899999999986959---99984299999999708


Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99881787889899999999854235710489866889999999999984698622688885078877642204666564
Q T0547           124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSK  203 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SK  203 (611)
                      .....++..+.-. ++++.++.     .++.+++-|..+++.+.+    ..+.+.++-  ++.+         ||  -.+
T Consensus        73 ~~~~Il~l~~~~~-~~~~~~~~-----~~~~~~i~s~~~~~~~~~----~~~~~~~vh--LkiD---------TG--M~R  129 (361)
T 2dy3_A           73 ISQEVLCWIWTPE-QDFRAAID-----RNIDLAVISPAHAKALIE----TDAEHIRVS--IKID---------SG--LHR  129 (361)
T ss_dssp             CCSEEEECCCCTT-SCHHHHHT-----TTCEEEECSHHHHHHHHT----SCCSCEEEE--EEBC---------CS--SCS
T ss_pred             CCCCEEEECCCCH-HHHHHHHH-----HCEEEEEEHHHHHHHHHH----HCCCCCEEE--EEEC---------CC--CCC
T ss_conf             9997687458985-89999875-----030235532888889998----617885499--9976---------89--976


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7889899999999998668987347888633887-67889999999999999999997179
Q T0547           204 FGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRKMGA  263 (611)
Q Consensus       204 FGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~~g~  263 (611)
                      +|+..+|+.++++.++..+.+ .+.|+..|..+- ..+.......++...++...+.+.+.
T Consensus       130 lG~~~~e~~~~~~~~~~~~~l-~~~gi~TH~a~ad~~d~~~~~~Q~~~F~~~~~~~~~~~~  189 (361)
T 2dy3_A          130 SGVDEQEWEGVFSALAAAPHI-EVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGL  189 (361)
T ss_dssp             SSBCHHHHHHHHHHHHTCTTE-EEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             788989999888888753475-257789874157864303699999999999998775278


No 29 
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=89.68  E-value=1  Score=23.51  Aligned_cols=195  Identities=12%  Similarity=0.056  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE
Q ss_conf             99999999999999999708---898723787453378789999999846667851662288999999964899881787
Q T0547            55 IQKQIENIYGNFNKARKEFG---YKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV  131 (611)
Q Consensus        55 l~~ri~~l~~aF~~A~~~~~---Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~  131 (611)
                      |..|+.++.+.-..|.+..+   -+...+.+=..| ++-...++++.++|... ||  -.=-.|+..-.....++-.-.|
T Consensus        14 l~~~~~~v~~~i~~a~~~~~~~r~~~~v~L~aVsK-~~~~~~i~~~~~~G~~~-fG--EnrvQE~~~K~~~l~~~~~wH~   89 (256)
T 1ct5_A           14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSK-LKPASDIQILYDHGVRE-FG--ENYVQELIEKAKLLPDDIKWHF   89 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------CCEEEEECT-TSCHHHHHHHHHHTCCE-EE--ECCHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCHHHHHHHHHCCCCE-EE--CCHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999999999998714899957669999979-98999999999859960-11--2459999999987378955988


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCC---EEEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             88989999999985423571048986688999999999998469862---268888507887764220466656478898
Q T0547           132 NGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKP---NIGLRVRLHSAGVGIWAKSGGINSKFGLTS  208 (611)
Q Consensus       132 nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p---~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~  208 (611)
                      =|-=...-++.++..  .-+..+-.|||+..++.|.+.+... +...   .+.|-||           ++++.+|+|++.
T Consensus        90 IG~LQ~NKvk~~~~~--~~~~~IhSVDsl~la~~L~~~a~k~-~~~~~~~~vlIQVN-----------i~~E~sK~G~~~  155 (256)
T 1ct5_A           90 IGGLQTNKCKDLAKV--PNLYSVETIDSLKKAKKLNESRAKF-QPDCNPILCNVQIN-----------TSHEDQKSGLNN  155 (256)
T ss_dssp             CSCCCGGGHHHHHHC--TTEEEEEEECSHHHHHHHHHHHHHH-CTTSCCEEEEEEBC-----------CSSSCCSSSBCC
T ss_pred             ECCCCCCHHHHHHHH--CCEEEECCCCHHHHHHHHHHHHHHH-CCCCCCCEEEEEEE-----------CCCCCCCCCCCC
T ss_conf             789975008999701--1221551235499999999999984-78778724899996-----------587667789993


Q ss_pred             H-HHHHHHHHHH--HCCCCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9-9999999998--66898734788863388767-889999999999999999997179940587
Q T0547           209 T-ELIEAVNLLK--ENKLLEQFTMIHFHLGSQIT-EIHPLKKALNEAGNIYTELRKMGAKNLKAI  269 (611)
Q Consensus       209 ~-ei~~~i~~l~--~~~~l~~L~gLHfHIGSQI~-di~~~~~ai~ea~~ly~eL~~~g~~~l~~L  269 (611)
                      + ++..+.+.+.  ..+.+ .++||=.|--.-.. +-............++.++.+.+.. ...|
T Consensus       156 ~~~~~~l~e~~~~~~l~~L-~l~GLMTi~p~a~~~d~~~~~~~F~~l~~l~~~l~~~~~~-~~~L  218 (256)
T 1ct5_A          156 EAEIFEVIDFFLSEECKYI-KLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT-SLKL  218 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCSE-EEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred             HHHHHHHHHHHHHHHCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEE
T ss_conf             8999999999998648787-6358054168889821017889999999999998606699-9988


No 30 
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=62.93  E-value=5.7  Score=17.84  Aligned_cols=56  Identities=11%  Similarity=0.028  Sum_probs=24.0

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99881787889899999999854235710489866-8899999999999846986226888
Q T0547           124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIE-GLNELEAIIDIAKERFKPKPNIGLR  183 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViD-s~~EL~~I~~ia~~~l~v~p~IgiR  183 (611)
                      .++.+|.==||-+-.....  ++++.|.+|+ -+| |..-++...+.++. .+..+++-++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~--la~~~~~~v~-gvd~s~~~~~~a~~~~~~-~gl~~~i~~~  137 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARF--LVRKFGVSID-CLNIAPVQNKRNEEYNNQ-AGLADNITVK  137 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHH--HHHHHCCEEE-EEESCHHHHHHHHHHHHH-HTCTTTEEEE
T ss_pred             CCCCEEEEECCCCCHHHHH--HHHHCCCEEE-EEECCHHHHHHHHHHHHH-CCCCCCCCCC
T ss_conf             9899899977999989999--9996498599-996742888898764221-0455543322


No 31 
>2g5x_A Lychnin, ribosome-inactivating protein; alpha-beta protein, hydrolase; 1.70A {Lychnis chalcedonica}
Probab=51.97  E-value=8.5  Score=16.56  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=13.7

Q ss_pred             CCHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf             20699974775156789857999988996
Q T0547           516 VGAYQEVLGMKHNLFTHPTEAIISINEKG  544 (611)
Q Consensus       516 vGAYQeiLGd~HNLfg~t~~v~v~~~~~g  544 (611)
                      -++...+-+..-+||-|++.....+.=+|
T Consensus        89 ~d~~~~~~~~~~~lf~~~~~~~~~L~f~g  117 (234)
T 2g5x_A           89 SDEYRALSGKYKSIFTDAEVLAPALPCAS  117 (234)
T ss_dssp             TTTHHHHGGGHHHHSTTCCEECCCCSSCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             88554564222333468732031077889


No 32 
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=49.71  E-value=6.7  Score=17.31  Aligned_cols=59  Identities=10%  Similarity=0.006  Sum_probs=24.8

Q ss_pred             CCC-CCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             489-9881787889899999999854235710489866-88999999999998469862268888
Q T0547           122 YNN-EGAPITVNGFKDRELINIGFIAAEMGHNITLTIE-GLNELEAIIDIAKERFKPKPNIGLRV  184 (611)
Q Consensus       122 ~g~-~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViD-s~~EL~~I~~ia~~~l~v~p~IgiRv  184 (611)
                      ++. ++.+|+==||-+-.....  ++..-|.+++ -+| |..-++...+.... .+...++-.+.
T Consensus        57 ~~l~~g~~VLDiGcG~G~~~~~--la~~~~~~v~-gvD~s~~~~~~ar~~~~~-~~~~~~~~~~~  117 (273)
T 3bus_A           57 LDVRSGDRVLDVGCGIGKPAVR--LATARDVRVT-GISISRPQVNQANARATA-AGLANRVTFSY  117 (273)
T ss_dssp             SCCCTTCEEEEESCTTSHHHHH--HHHHSCCEEE-EEESCHHHHHHHHHHHHH-TTCTTTEEEEE
T ss_pred             CCCCCCCEEEEECCCCCHHHHH--HHHHCCCEEE-EEECCHHHHHHHHHHHHH-HCCCCCCCCCC
T ss_conf             5989999999977889899999--9986796899-972868899998777776-14565333202


No 33 
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=44.27  E-value=12  Score=15.37  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE--ECC
Q ss_conf             546788865104873364374663014677765567788878960788860206999747751567898579999--889
Q T0547           465 LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS--INE  542 (611)
Q Consensus       465 l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~--~~~  542 (611)
                      |.|++.. ...-.|+.-..|+||+++...+.    -.+. .+ .|-| .|.+|+|=.-.|.. . |  -..|.|.  +.+
T Consensus        24 L~~~~~~-~~~~~i~~~~Td~dGRi~~l~~~----~~~~-~G-~YeL-~F~~~~Yf~~~~~~-~-f--~p~V~i~F~i~~   91 (119)
T 1oo2_A           24 VSQKTAD-GGWTQIATGVTDATGEIHNLITE----QQFP-AG-VYRV-EFDTKAYWTNQGST-P-F--HEVAEVVFDAHP   91 (119)
T ss_dssp             EEEECTT-SCEEEEEEEECCTTSCCTTCSCG----GGCC-SE-EEEE-EECHHHHHHHTTCC-C-S--EEEEEEEEEECC
T ss_pred             EEEECCC-CCEEEEEEEEECCCCCCCCCCCC----CCCC-CC-EEEE-EEEHHHHHHHCCCC-C-C--CCEEEEEEEECC
T ss_conf             9998899-98389999987899868675674----5356-81-0999-99768989860999-8-8--853799999778


Q ss_pred             --CC-EEEEEEC
Q ss_conf             --96-2887513
Q T0547           543 --KG-YEVEGII  551 (611)
Q Consensus       543 --~g-~~i~~~~  551 (611)
                        ++ |.|--++
T Consensus        92 d~~~hYHVPlLl  103 (119)
T 1oo2_A           92 EGHGHYTLALLL  103 (119)
T ss_dssp             SSSCCEEEEEEE
T ss_pred             CCCCCEEEEEEE
T ss_conf             999870677797


No 34 
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide, dipteran specificity, conformational change; 1.75A {Bacillus thuringiensis serovarisraelensis}
Probab=41.55  E-value=5.3  Score=18.12  Aligned_cols=64  Identities=13%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC----CCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             7999999999999999999970----88987237874533787899999998466678516622889999
Q T0547            52 PHLIQKQIENIYGNFNKARKEF----GYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELL  117 (611)
Q Consensus        52 ~dil~~ri~~l~~aF~~A~~~~----~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~  117 (611)
                      ...++.|.+.+...|..++...    +|+...-++||.=||=|.-+++..+..|.+|  |+.-.-.....
T Consensus        60 ~~~v~~~f~~~~~~f~~~mp~f~~~~~yev~lLp~YaqaANLHLlLLRD~i~~G~~W--g~~~~~i~~~y  127 (558)
T 1w99_A           60 RTAVITQFNLTSAKLRETAVYFSNLVGYELLLLPIYAQVANFNLLLIRDGLINAQEW--SLARSAGDQLY  127 (558)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSTTCTTTTHHHHHHHHHHHHHHHHHHHHTHHHH--CSSCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf             999999999999999985056512688610048999999999999998999877431--99832689999


No 35 
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3l90_A*
Probab=39.61  E-value=14  Score=14.87  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf             898999999999986689873478886338876
Q T0547           206 LTSTELIEAVNLLKENKLLEQFTMIHFHLGSQI  238 (611)
Q Consensus       206 l~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI  238 (611)
                      +++.++.+.++.+++.... . .++|||=-.+.
T Consensus       206 ~~P~~v~~~i~~~~~~~~~-~-ig~H~HNd~Gl  236 (423)
T 3ivs_A          206 ATPRQVYDLIRTLRGVVSC-D-IECHFHNDTGM  236 (423)
T ss_dssp             CCHHHHHHHHHHHHHHCSS-E-EEEEEBCTTSC
T ss_pred             CCHHHHHHHEECCCCCCCC-E-EEEEECCCCCC
T ss_conf             7716753110021133234-0-58997898562


No 36 
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=38.20  E-value=15  Score=14.72  Aligned_cols=111  Identities=20%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             78877642204666564788989999999999866898734788863388767889999999999999999997179940
Q T0547           187 HSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNL  266 (611)
Q Consensus       187 ~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l  266 (611)
                      ++-+.|......   .+|--..  ..+.+........- .++--=|-+|.|......|-.|++.   +...+.+.|+..+
T Consensus        56 sT~g~Ge~P~~~---~~f~~~~--~~~~~~~~~~~~l~-g~~~AvFGlGd~~~~~~~Fc~a~~~---l~~~l~~~GA~~i  126 (182)
T 2wc1_A           56 PTLGDGQLPGLS---ANAASES--WEEFLPRIADQDFS-GKTIALFGLGDQVTYPLEFVNALFF---LHEFFSDRGANVV  126 (182)
T ss_dssp             ECBTTTBCSSGG---GTCSSCC--HHHHGGGGTTCCCT-TCEEEEEEECCTTTCTTSTTTHHHH---HHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCCH---HHHHHHH--HHHHHHHCCCCCCC-CCEEEEEEECCCCCHHHHHHHHHHH---HHHHHHHCCCEEE
T ss_conf             388899788414---6779999--99987521467868-8889999625864133788778999---9999997899999


Q ss_pred             EEEECCC---------------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             5872455---------------655477777777777888899999999999999996489987
Q T0547           267 KAINLGG---------------GLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEP  315 (611)
Q Consensus       267 ~~LDIGG---------------GlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P  315 (611)
                      .....-|               ||++|.+... ..      .  ...|-.=+.++..+.+++.|
T Consensus       127 G~~~~~~y~f~~s~~~~~~~f~gL~lD~dn~~-~~------t--~~ri~~W~~~l~~e~~~~lp  181 (182)
T 2wc1_A          127 GRWPAKGYGFEDSLAVVEGEFLGLALDQDNQA-AL------T--PERLKGWLSLIAADFGLVLP  181 (182)
T ss_dssp             CCEECTTSCCSCCTTEETTEESSEEECTTTCG-GG------H--HHHHHHHHHHTHHHHTCCCC
T ss_pred             EEECCCCCCCCCCHHCCCCCEEECCCCCCCCH-HH------H--HHHHHHHHHHHHHHHCCCCC
T ss_conf             41448996611011310891586202676752-23------5--99999999999999767589


No 37 
>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=37.99  E-value=15  Score=14.69  Aligned_cols=45  Identities=16%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC----CCCCCCHHHHHHHHHHHH
Q ss_conf             7889899999999998668987347888633----887678899999999999
Q T0547           204 FGLTSTELIEAVNLLKENKLLEQFTMIHFHL----GSQITEIHPLKKALNEAG  252 (611)
Q Consensus       204 FGl~~~ei~~~i~~l~~~~~l~~L~gLHfHI----GSQI~di~~~~~ai~ea~  252 (611)
                      -=++++|+.+....+.++|.    ..+|+|+    |.+..|+..|++.+.+..
T Consensus        29 vP~Tp~Eia~~A~~c~~AGA----s~vH~HvRd~~G~~sld~~~y~e~i~~ir   77 (284)
T 3chv_A           29 VPITVSEQVESTQEAFEAGA----AIAHCHVRNDDGTPSSDPDRFARLTEGLH   77 (284)
T ss_dssp             CCCSHHHHHHHHHHHHHHTC----CEEEECEECTTSCEECCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98998999999999998188----58998741899497778899999999999


No 38 
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=37.61  E-value=15  Score=14.65  Aligned_cols=63  Identities=11%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             687278888889999999855799858987479999999999999999999708898723787453
Q T0547            21 VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLK   86 (611)
Q Consensus        21 l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK   86 (611)
                      +.|+|...-||.+|.+-.++.|.|.--|-.+.+.|++||.+-.++|.+..   ..++.-.+.|-..
T Consensus         4 lviRpv~~~Dl~~L~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sf~~~~---~~~~~~~YlFVLE   66 (342)
T 1yle_A            4 LVMRPAQAADLPQVQRLAADSPVGVTSLPDDAERLRDKILASEASFAAEV---SYNGEESYFFVLE   66 (342)
T ss_dssp             EEEEECCGGGHHHHHHHHHHSCTTCTTSCSCHHHHHHHHHHHHHHHHCTT---CCCSCCEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCEEEEEE
T ss_conf             99964743229999999997499864599999999999999999861667---8888853899999


No 39 
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemical rescue, hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=37.00  E-value=15  Score=14.58  Aligned_cols=56  Identities=11%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECC
Q ss_conf             999999999986689-87347888633887678899999999999999999971799-40587245
Q T0547           209 TELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK-NLKAINLG  272 (611)
Q Consensus       209 ~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~-~l~~LDIG  272 (611)
                      ..+.+.++.+++.+. ++ -.|+++|++.+.++++.++..++       ++.+.|.+ .+..+||.
T Consensus       183 ~~~~~~v~~l~~~g~~iD-giG~Q~H~~~~~~~~~~i~~~l~-------~~~~~Glpi~ITElDv~  240 (436)
T 2d1z_A          183 QGVYNMVRDFKQRGVPID-CVGFQSHFNSGSPYNSNFRTTLQ-------NFAALGVDVAITELDIQ  240 (436)
T ss_dssp             HHHHHHHHHHHHHTCCCC-EEEECCEEBTTBCCCTTHHHHHH-------HHHTTTCEEEEEEEEET
T ss_pred             HHHHHHHHHHHHCCCCCC-CCCEEEEECCCCCCHHHHHHHHH-------HHHHCCCEEEEEEEECC
T ss_conf             999999999997899614-02203552799999899999999-------99865990699762467


No 40 
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=34.48  E-value=17  Score=14.30  Aligned_cols=61  Identities=13%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCEEEEECCCCCC
Q ss_conf             8999999999986689-8734788863388767889999999999999999997179---9405872455655
Q T0547           208 STELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA---KNLKAINLGGGLA  276 (611)
Q Consensus       208 ~~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~---~~l~~LDIGGGlg  276 (611)
                      ...+.+.++.+++.+. ++ -.|+++|++.+-.++..++.++++..       ..|.   ..+..+||+..-+
T Consensus       191 ~~~~~~lv~~l~~~gvpID-gIG~Q~H~~~~~~~~~~i~~~l~~~~-------~lg~~l~v~ITElDV~~~~~  255 (348)
T 1w32_A          191 TTALVNLVQRLLNNGVPID-GVGFQMHVMNDYPSIANIRQAMQKIV-------ALSPTLKIKITELDVRLNNP  255 (348)
T ss_dssp             HHHHHHHHHHHHHTTCCCC-EEEECCEEESSSSCHHHHHHHHHHHH-------TTCSSCEEEEEEEEEESCCT
T ss_pred             HHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCHHHHHHHHHHHH-------HHCCCCCEEEEEEEECCCCC
T ss_conf             8999999999997899612-10246310578999999999999999-------72899716998877626776


No 41 
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=34.01  E-value=17  Score=14.25  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             68899999999999999973696678
Q T0547           374 ALEYLHDSIDHLESILTLFDLGYVDL  399 (611)
Q Consensus       374 ~~E~~~da~~~~~~~~~~f~~G~l~L  399 (611)
                      ..|.|..=..|+.-+..+|..|.+++
T Consensus       255 ~~~~~r~w~~YL~~c~~~F~~g~l~v  280 (287)
T 1kpg_A          255 SEEVYERYMKYLTGCAEMFRIGYIDV  280 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             89999999999999999997799639


No 42 
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=33.58  E-value=13  Score=15.08  Aligned_cols=21  Identities=14%  Similarity=0.303  Sum_probs=16.6

Q ss_pred             CCCCCEEEEECCCCCCCCCCC
Q ss_conf             886510487336437466301
Q T0547           470 EEPTRSASIWDITCDSDGEIS  490 (611)
Q Consensus       470 e~P~~~~~l~DiTCDSDG~i~  490 (611)
                      ..+.+..++.||+||..|.+.
T Consensus       280 ~~mk~gsVIvDVA~D~GG~iE  300 (401)
T 1x13_A          280 DSMKAGSVIVDLAAQNGGNCE  300 (401)
T ss_dssp             HTSCTTCEEEETTGGGTCSBT
T ss_pred             HHHCCCCEEEEECCCCCCCCC
T ss_conf             100268569981367899836


No 43 
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=33.30  E-value=18  Score=14.17  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHCCCCCCEEEECHHH-----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--------------ECC
Q ss_conf             88899999998557998589874799-----99999999999999999708898723787453--------------378
Q T0547            29 PAIIDIVKELRDDGYKGPLLLRFPHL-----IQKQIENIYGNFNKARKEFGYKGGFNAVYPLK--------------VNQ   89 (611)
Q Consensus        29 ~~l~dlv~~l~~~~~~tPllvrf~di-----l~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK--------------aN~   89 (611)
                      +...+.++.++++|+..=+.-.-+.+     ....+...+......+...+.......+-+..              .=|
T Consensus        53 pgv~e~L~~L~~~g~~i~ivTn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rKP  132 (211)
T 2gmw_A           53 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKP  132 (211)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCBTTCSSGGGBSCCSSSTT
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             57999999999769908985163054420458999988888888875202124454177242343665533455567899


Q ss_pred             CHHHHHHHHH-HCCCCCCEEEEC-CHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             7899999998-466678516622-88999999964899881787889899999999854235710489866889999999
Q T0547            90 YPGFVKNLVK-LGKDYNYGLEAG-SKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAII  167 (611)
Q Consensus        90 ~~~Vv~~i~~-~G~~~~~GlEv~-Sk~EL~~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~  167 (611)
                      +|..+..+++ ++....=-+=+| |...+.+|.++|.+..-+++.|+-..+..+..         ...+++++.||..++
T Consensus       133 ~P~~i~~al~~l~id~~~~i~VGDs~~Di~~A~~AGi~t~~lv~~g~~~~~~~~~~---------ad~iv~~l~el~~~l  203 (211)
T 2gmw_A          133 HPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENA---------ADWVLNSLADLPQAI  203 (211)
T ss_dssp             SCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHH---------CSEEESCGGGHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHCC---------CCEEECCHHHHHHHH
T ss_conf             87156788886286723373516999999999987998379966898876013127---------988989999999999


Q ss_pred             H
Q ss_conf             9
Q T0547           168 D  168 (611)
Q Consensus       168 ~  168 (611)
                      +
T Consensus       204 k  204 (211)
T 2gmw_A          204 K  204 (211)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 44 
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134}
Probab=30.72  E-value=19  Score=13.87  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE-----CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             4788989999999999866898734788863-----38876788999999999999999999717994058724556554
Q T0547           203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFH-----LGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAV  277 (611)
Q Consensus       203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfH-----IGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV  277 (611)
                      -.=++++|+.+....+.++|.  .  .+|+|     -|++..|...|++.+..       +++. +++ -.+++-.|.+.
T Consensus        42 ~lPvTpeEIa~~A~~c~~AGA--s--ivHlHvRd~~dG~~s~D~~~y~e~i~~-------IR~~-~pd-~ii~~Ttg~~~  108 (316)
T 3c6c_A           42 SMPITPAQIADACVEAAKAGA--S--VAHIHVRDPKTGGGSRDPVLFKEVVDR-------VRSS-GTD-IVLNLTCGLGA  108 (316)
T ss_dssp             TCCCSHHHHHHHHHHHHHHTC--S--EEEECEECTTTCCEECCHHHHHHHHHH-------HHTT-TCC-CEEEEECCCSE
T ss_pred             CCCCCHHHHHHHHHHHHHHCC--C--EEEEEECCCCCCCCCCCHHHHHHHHHH-------HHHH-CCC-EEEEECCCCCC
T ss_conf             998998999999999998286--4--899875578889847899999999999-------9976-798-28983466445


Q ss_pred             CCC
Q ss_conf             777
Q T0547           278 EYS  280 (611)
Q Consensus       278 ~Y~  280 (611)
                      .|.
T Consensus       109 ~~~  111 (316)
T 3c6c_A          109 FLL  111 (316)
T ss_dssp             EEC
T ss_pred             CCC
T ss_conf             567


No 45 
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=30.50  E-value=14  Score=14.95  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99999999999999999997---088987237874533787899999998466678516622
Q T0547            53 HLIQKQIENIYGNFNKARKE---FGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAG  111 (611)
Q Consensus        53 dil~~ri~~l~~aF~~A~~~---~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~  111 (611)
                      ..++.+...+...|..++..   -+|+-.--++||.=||-+..+++..+..|.+|  |+...
T Consensus       103 ~~v~~~f~~~~~~f~~~~~~F~~~~ye~~lLp~YaqaAnlhL~LLrD~i~~g~~W--g~~~~  162 (589)
T 2qkg_A          103 RDVRNRFEILDSLFTQYMPSFRVTGYEVPLLSVYAQAANLHLLLLKDASIFGEEW--GFSTT  162 (589)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHTTTT--TCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH
T ss_conf             9999999999999999889847688400038899999999999999999876642--99979


No 46 
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA0888, degradation of proteins and peptides, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=29.60  E-value=8.8  Score=16.45  Aligned_cols=12  Identities=33%  Similarity=0.678  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             653303244223
Q T0547           439 RYLVNFSLFQSM  450 (611)
Q Consensus       439 ~y~~NfS~Fqsl  450 (611)
                      +|+||+..|+||
T Consensus       136 ~ylCN~~~Y~sL  147 (192)
T 2ebj_A          136 SYLCNQAFYLSL  147 (192)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHH
T ss_conf             233369999999


No 47 
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=28.93  E-value=5.6  Score=17.89  Aligned_cols=17  Identities=6%  Similarity=0.258  Sum_probs=8.7

Q ss_pred             EEEEECCCCCCCHHHHH
Q ss_conf             88863388767889999
Q T0547           229 MIHFHLGSQITEIHPLK  245 (611)
Q Consensus       229 gLHfHIGSQI~di~~~~  245 (611)
                      -+...-|..+.|--.|+
T Consensus       129 ~iS~daG~YlCN~~yY~  145 (206)
T 1iu8_A          129 VLSYTAGTYLCNFAMYL  145 (206)
T ss_dssp             EEESCCCSSHHHHHHHH
T ss_pred             EECCCCCCCCHHHHHHH
T ss_conf             98589865413699999


No 48 
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=28.26  E-value=16  Score=14.39  Aligned_cols=67  Identities=10%  Similarity=0.151  Sum_probs=35.3

Q ss_pred             HHHHCCCCCCCEEE-----CC-C--CC---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             99964899881787-----88-9--89---99999998542357104898668899999999999846986226888850
Q T0547           118 LAMAYNNEGAPITV-----NG-F--KD---RELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRL  186 (611)
Q Consensus       118 ~ala~g~~~~~Ii~-----nG-~--Kd---~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l  186 (611)
                      +|..++.|.++|..     -| +  |.   .+.+-.++.+++.|+-|.++.+-.+++..        ...+|..-.|++.
T Consensus       246 iA~~lglp~~~V~V~~~~~GGgFG~K~~~~~~~~~a~~aa~~~grPVkl~~sRee~~~~--------~~~r~~~~~~~~~  317 (803)
T 1ffv_B          246 VSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENIST--------TAFARDYHMDGEL  317 (803)
T ss_dssp             HHHHHCCCGGGEEEECCCCSCCTTTTSSCCHHHHHHHHHHHHHTSCEEEECCHHHHHHH--------SCEECCEEEEEEE
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHC--------CCCCCCEEEEEEE
T ss_conf             33331578724899956635768888765369999999998518986998426453330--------4666756998766


Q ss_pred             CCCCCC
Q ss_conf             788776
Q T0547           187 HSAGVG  192 (611)
Q Consensus       187 ~~~~~g  192 (611)
                      +.+..|
T Consensus       318 g~~~dG  323 (803)
T 1ffv_B          318 AATPDG  323 (803)
T ss_dssp             EECTTC
T ss_pred             EECCCC
T ss_conf             888889


No 49 
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=28.17  E-value=15  Score=14.59  Aligned_cols=89  Identities=12%  Similarity=0.098  Sum_probs=43.8

Q ss_pred             EEEEEECCHHHHHHCCCCCCC-CCCCEEEEEECCCCEEEEEECCC--------------CCHHHHHHHHCC------CHH
Q ss_conf             788860206999747751567-89857999988996288751378--------------878999987285------888
Q T0547           510 FLGFFLVGAYQEVLGMKHNLF-THPTEAIISINEKGYEVEGIIEA--------------QSILDTLEDLDY------DIH  568 (611)
Q Consensus       510 ~lG~FlvGAYQeiLGd~HNLf-g~t~~v~v~~~~~g~~i~~~~~g--------------dt~~~vL~~v~y------~~~  568 (611)
                      -+.+--=|++|=.++.+...- =+.+.+.|-+|.+||-+.+.++.              -....+-+.++.      +++
T Consensus       436 vv~i~GDGsf~m~~~eL~Ta~~~~l~i~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~  515 (556)
T 3hww_A          436 TLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQ  515 (556)
T ss_dssp             EEEEEEHHHHHHTGGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEECCSSHH
T ss_pred             EEEEECCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHH
T ss_conf             69997183142147899999984969589999799962652310135544520378999999999986798499968999


Q ss_pred             HHHHHHHHHHHHC------CCCCHHHHHHHHHHHHH
Q ss_conf             9999999999852------68898899999999999
Q T0547           569 AIMDILNERISNS------KLVNDKQKKHILGELYL  598 (611)
Q Consensus       569 ~l~~~~~~~~~~~------~~~~~~e~~~~l~~~~~  598 (611)
                      +|.+.+++-.+..      -.+++++....++.+-.
T Consensus       516 el~~al~~a~~~~~p~lIeV~vd~~~~~~~~~~~~~  551 (556)
T 3hww_A          516 ELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLA  551 (556)
T ss_dssp             HHHHHHHHHTTSSSEEEEEEECCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999999999858980999998480777999999999


No 50 
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: CE6; 1.90A {Clostridium thermocellum}
Probab=28.08  E-value=21  Score=13.55  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=10.0

Q ss_pred             HHHHHHHHCCCCCCEEEEEEEC-CCCCC
Q ss_conf             9999998668987347888633-88767
Q T0547           213 EAVNLLKENKLLEQFTMIHFHL-GSQIT  239 (611)
Q Consensus       213 ~~i~~l~~~~~l~~L~gLHfHI-GSQI~  239 (611)
                      ++++-++++++  .++| |.-| +||.+
T Consensus       250 ~~v~~a~~~g~--~vrG-H~LvW~~~~P  274 (540)
T 2w5f_A          250 SILNFCAQNNI--AVRG-HTLVWHSQTP  274 (540)
T ss_dssp             HHHHHHHHTTC--EEEE-EEEECSSSCC
T ss_pred             HHHHHHHHCCC--EEEE-EEEECCCCCC
T ss_conf             99999998799--7999-9786787585


No 51 
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), hydrolase inhibitor/hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=27.76  E-value=21  Score=13.51  Aligned_cols=37  Identities=8%  Similarity=-0.154  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             9999999998668987347888633887678899999
Q T0547           210 ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKK  246 (611)
Q Consensus       210 ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~  246 (611)
                      ...+.++.+++.+.--.-.|+++|.+.+-.+...++.
T Consensus       185 ~~~~~v~~l~~~g~~idgIG~Q~H~~~~~~~~~~~~~  221 (303)
T 1ta3_B          185 AMASYVKKWLAEGVPIDGIGSQAHYSSSHWSSTEAAG  221 (303)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECCEECTTCCCGGGHHH
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf             8999999999689986536565304778999899999


No 52 
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; HET: MSE GOL; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: d.356.1.1
Probab=27.62  E-value=22  Score=13.50  Aligned_cols=130  Identities=9%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             ECCEEEECCCCCC-CHHHHHHHHH--HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf             0674687278888-8899999998--557998589874799999999999999999997088987237874533787899
Q T0547            17 KNGKVCINYEKKP-AIIDIVKELR--DDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF   93 (611)
Q Consensus        17 ~~G~l~v~p~~~~-~l~dlv~~l~--~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~V   93 (611)
                      +.|++.+...... .|...+++..  .-|+..|++||..+-++.-+..  .-|..+    +-......+|....=+...+
T Consensus        44 qSGNvvf~s~~~~~~l~~~ie~~l~~~fG~~~~v~vrs~~el~~~i~~--nPf~~~----~~~~~~~v~f~~~~~~~~~~  117 (183)
T 2hiy_A           44 NSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSLLSLEDFEAELEN--LPAWWS----RDLARKDFLFYTEGLDVDQV  117 (183)
T ss_dssp             TTTEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEEEEHHHHHHHHTT--CCGGGG----SCCSEEEEEEECTTCCHHHH
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH--CCCCCC----CCCCEEEEEEECCCCCHHHH
T ss_conf             137589747999999999999999987599877899259999999997--899633----57772489997587760778


Q ss_pred             HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE---C--CC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             99999846667851662288999999964899881787---8--89-899999999854235710489866889999999
Q T0547            94 VKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV---N--GF-KDRELINIGFIAAEMGHNITLTIEGLNELEAII  167 (611)
Q Consensus        94 v~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~---n--G~-Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~  167 (611)
                      ...+....    .+-|..           ...+..|++   .  |+ |++  +..++...++|..  .+.=|..-+.+|.
T Consensus       118 ~~~~~~~~----~~~E~~-----------~~~~~~iy~~~~~~~~~~ks~--l~~~~~~~~l~~~--~T~RNwnTv~kL~  178 (183)
T 2hiy_A          118 IATVESLE----LKDEVL-----------YFGKLGIFWGKFSEESYSKTA--YHKYLLKVPFYRH--ITIRNAKTFDKIG  178 (183)
T ss_dssp             HHHHHTSC----CCSEEE-----------EECSSEEEEEECCTTTGGGSH--HHHHGGGSTTGGG--EEEEEHHHHHHHH
T ss_pred             HHHHHCCC----CCCEEE-----------EECCCEEEEECCCCCCCCCCH--HHHHHHHHCCCCC--CCCCHHHHHHHHH
T ss_conf             88874046----898289-----------985989999516888754216--6787753003776--1422299999999


Q ss_pred             HHHH
Q ss_conf             9999
Q T0547           168 DIAK  171 (611)
Q Consensus       168 ~ia~  171 (611)
                      ++++
T Consensus       179 ~m~~  182 (183)
T 2hiy_A          179 QMLK  182 (183)
T ss_dssp             HHHH
T ss_pred             HHHC
T ss_conf             9973


No 53 
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=25.75  E-value=23  Score=13.26  Aligned_cols=12  Identities=8%  Similarity=-0.103  Sum_probs=4.0

Q ss_pred             EEEEECCCCCCC
Q ss_conf             888633887678
Q T0547           229 MIHFHLGSQITE  240 (611)
Q Consensus       229 gLHfHIGSQI~d  240 (611)
                      |+|.|++.+-.+
T Consensus       222 G~Q~H~~~~~~~  233 (356)
T 2uwf_A          222 GHQSHIQIGWPS  233 (356)
T ss_dssp             EECCEEESSCSC
T ss_pred             EEEECCCCCCCC
T ss_conf             776225467779


No 54 
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=24.78  E-value=24  Score=13.13  Aligned_cols=40  Identities=15%  Similarity=0.082  Sum_probs=18.9

Q ss_pred             ECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             07567775041145522102235666654556544517899999
Q T0547           320 ESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY  363 (611)
Q Consensus       320 EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~  363 (611)
                      -|.|-.-+.=+-=++.+..-.+....+.-.    .+|.+.+++.
T Consensus       249 l~~r~F~~~LA~r~F~~tqyIR~~~~~~Yt----pEPDi~Hel~  288 (429)
T 1phz_A          249 LSSRDFLGGLAFRVFHCTQYIRHGSKPMYT----PEPDICHELL  288 (429)
T ss_dssp             CCHHHHHHHHTTTEEEECCCCCCTTCTTCC----SSCCHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCCHHHHH
T ss_conf             788999999753723135333266545557----8996144554


No 55 
>2qw5_A Xylose isomerase-like TIM barrel; YP_324688.1, putative sugar phosphate isomerase/epimerase, structural genomics; 1.78A {Anabaena variabilis atcc 29413}
Probab=24.60  E-value=24  Score=13.11  Aligned_cols=16  Identities=31%  Similarity=0.671  Sum_probs=11.0

Q ss_pred             CHHHHHHHHHHCCCCC
Q ss_conf             8899999998557998
Q T0547            30 AIIDIVKELRDDGYKG   45 (611)
Q Consensus        30 ~l~dlv~~l~~~~~~t   45 (611)
                      ++.+.++.+++-||..
T Consensus        32 ~l~~~l~~~~~~Gfdg   47 (335)
T 2qw5_A           32 IVVAHIKKLQRFGYSG   47 (335)
T ss_dssp             HHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHCCCE
T ss_conf             3999999999749898


No 56 
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis}
Probab=24.31  E-value=15  Score=14.65  Aligned_cols=16  Identities=6%  Similarity=-0.022  Sum_probs=7.4

Q ss_pred             EEEECCCCCCCHHHHH
Q ss_conf             8863388767889999
Q T0547           230 IHFHLGSQITEIHPLK  245 (611)
Q Consensus       230 LHfHIGSQI~di~~~~  245 (611)
                      +.-.-|..+.|--.|+
T Consensus       134 iS~daG~YlCN~~yY~  149 (215)
T 3lac_A          134 VSQTAGTFVCNHLFYG  149 (215)
T ss_dssp             EESCCCSSHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHH
T ss_conf             8278511065599999


No 57 
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=24.25  E-value=17  Score=14.29  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             73074346889999999999999997369667899989999999999999985123456046788888875565330324
Q T0547           367 KSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSL  446 (611)
Q Consensus       367 ~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~  446 (611)
                      .++++.|..|   |+-..+++..+.|.--.+------+.++|...-.+++...+.+.+.-.-.++.-+.|-+.-|+=-|+
T Consensus       305 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~p~~~~~~~~~e~~~~~~~~~~~~  381 (396)
T 1fkm_A          305 SNMTPNNAVE---DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL  381 (396)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCC---CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             0357542000---0003332000011278999999989999962649999999865998785076899999988999999


Q ss_pred             HHCCHHHHCC
Q ss_conf             4223101000
Q T0547           447 FQSMPDFWGL  456 (611)
Q Consensus       447 FqslPD~Wai  456 (611)
                      |.+.|-+|--
T Consensus       382 ~~~~~~~~~~  391 (396)
T 1fkm_A          382 YKDATSHWLH  391 (396)
T ss_dssp             HC--------
T ss_pred             HHCCCHHHHH
T ss_conf             8516066654


No 58 
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=23.97  E-value=25  Score=13.03  Aligned_cols=22  Identities=14%  Similarity=0.049  Sum_probs=8.1

Q ss_pred             CCHHHHHCCCEEEEEEEECCCC
Q ss_conf             7567775041145522102235
Q T0547           321 SGRFVAANHAVLIAPVLELFSQ  342 (611)
Q Consensus       321 pGRaivA~~~vLv~~Vi~v~~~  342 (611)
                      |.|-.-+.=+-=++.+..-.+.
T Consensus       148 ~~r~F~~~LA~RvFp~TqyIRh  169 (325)
T 1j8u_A          148 SSRDFLGGLAFRVFHCTQYIRH  169 (325)
T ss_dssp             CHHHHHHHHHTTEEEECCCCCC
T ss_pred             CHHHHHHHHHCCCCCCCCEECC
T ss_conf             9899999985781144123268


No 59 
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyneuropathy, transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=23.58  E-value=25  Score=12.97  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE--ECC
Q ss_conf             546788865104873364374663014677765567788878960788860206999747751567898579999--889
Q T0547           465 LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS--INE  542 (611)
Q Consensus       465 l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~--~~~  542 (611)
                      |.|+++. ...-.|..-..|.||+++.+....    .+. ++ .|-| .|.+|+|=.-+|-- . |  -..|.|+  +.+
T Consensus        32 L~~~~~~-~~~~~i~~~~Td~dGRi~~~~~~~----~~~-~G-~YeL-~F~~~~Yf~~~~~~-~-f--~p~v~I~F~v~d   99 (127)
T 2h4e_A           32 VFRKAAD-DTWEPFASGKTSESGELHGLTTEE----EFV-EG-IYKV-EIDTKSYWKALGIS-P-F--HEHAEVVFTAND   99 (127)
T ss_dssp             EEEECTT-SCEEEEEEEECCTTSEECCSCCTT----TCC-SE-EEEE-EECHHHHHHHTTCC-C-S--EEEEEEEEEEST
T ss_pred             EEEECCC-CCEEEEEEEECCCCCCCCCCCCCC----CCC-CE-EEEE-EEEHHHHHHHCCCC-C-C--CCEEEEEEEECC
T ss_conf             9998899-977899999818998826766745----567-76-7999-99868989864999-7-8--741789999438


Q ss_pred             -CC--EEEEEEC
Q ss_conf             -96--2887513
Q T0547           543 -KG--YEVEGII  551 (611)
Q Consensus       543 -~g--~~i~~~~  551 (611)
                       ++  |.|--++
T Consensus       100 ~~~~hYHiPlLl  111 (127)
T 2h4e_A          100 SGPRRYTIAALL  111 (127)
T ss_dssp             TSCCEEEEEEEE
T ss_pred             CCCCCEEEEEEE
T ss_conf             999825574796


No 60 
>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=23.42  E-value=25  Score=12.95  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             CCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC--
Q ss_conf             96078886020699974775156789857999988-996288751378878999987285888999999999985268--
Q T0547           507 ENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISIN-EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKL--  583 (611)
Q Consensus       507 e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~-~~g~~i~~~~~gdt~~~vL~~v~y~~~~l~~~~~~~~~~~~~--  583 (611)
                      .++...++-.|..|--+-..--+.|.    ||++. ||+.++..-..-.           +-.+|+++..+-+.+.++  
T Consensus       227 ~~~~wsv~g~G~~~~~l~~~Ai~lGG----hVRVGlEDnl~~~~G~~A~-----------sNaelV~~~v~ia~~~gr~i  291 (311)
T 3e49_A          227 ADYVWSILGAGRHQIPLASIGAAQGA----NVRVGLEDSLWIAPGELAE-----------TNAAQVRKIRQVIEGLSLEV  291 (311)
T ss_dssp             GGEEEEEEECGGGHHHHHHHHHTTTC----EEEECTTTCSEEETTEECS-----------CHHHHHHHHHHHHHHTTCCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----CCEECCCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCC
T ss_conf             99748995067404899999998099----7187677551069999997-----------89999999999999859998


Q ss_pred             CCHHHHHHHHH
Q ss_conf             89889999999
Q T0547           584 VNDKQKKHILG  594 (611)
Q Consensus       584 ~~~~e~~~~l~  594 (611)
                      -|++|.+++|.
T Consensus       292 At~~eaR~iLg  302 (311)
T 3e49_A          292 ASPAEARTMLG  302 (311)
T ss_dssp             CCHHHHHHHHT
T ss_pred             CCHHHHHHHHC
T ss_conf             99999999948


No 61 
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=23.00  E-value=26  Score=12.90  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999997088
Q T0547            63 YGNFNKARKEFGY   75 (611)
Q Consensus        63 ~~aF~~A~~~~~Y   75 (611)
                      ..||+++++++++
T Consensus        25 ~~a~~~~~~~~g~   37 (225)
T 3d6j_A           25 VTCFRSVLERHGY   37 (225)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999998699


No 62 
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A
Probab=22.84  E-value=26  Score=12.87  Aligned_cols=35  Identities=14%  Similarity=0.094  Sum_probs=15.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             764220466656478898999999999986689873478
Q T0547           191 VGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTM  229 (611)
Q Consensus       191 ~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~g  229 (611)
                      .-||...-....+|-.  +.+.++++.++++++  .+.|
T Consensus       213 ~mKW~~iep~~G~~nf--~~aD~~v~~a~~ngi--~vrG  247 (530)
T 1us2_A          213 IMKMSYMQPTEGNFNF--TNADAFVDWATENNM--TVHG  247 (530)
T ss_dssp             TTSHHHHCSBTTBCCC--HHHHHHHHHHHHTTC--EEEE
T ss_pred             CCCHHHHCCCCCCCCC--HHHHHHHHHHHHCCC--EEEE
T ss_conf             5773775787982680--899999999998889--7999


No 63 
>3e02_A Uncharacterized protein DUF849; YP_555544.1, protein of unknown function (DUF849), structural genomics; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=22.60  E-value=26  Score=12.84  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=52.3

Q ss_pred             CCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Q ss_conf             896078886020699974775156789857999988-996288751378878999987285888999999999985268-
Q T0547           506 KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISIN-EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKL-  583 (611)
Q Consensus       506 ~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~-~~g~~i~~~~~gdt~~~vL~~v~y~~~~l~~~~~~~~~~~~~-  583 (611)
                      .++....++-.|..|=-+-..--+.|.    ||++. ||..++..-..-.           +-.+|+++..+-+...|+ 
T Consensus       226 ~~~~~w~~~g~g~~~~~~~~~Ai~lGG----hvRVGlED~l~~~~G~~A~-----------~NaeLV~~~~~ia~~~gr~  290 (311)
T 3e02_A          226 GQDYYLSVLAAGRHQMPFVTMSAILGG----NVRVGLEDSLYSGKGQLAT-----------SNAEQVRKIRRIIEELSLD  290 (311)
T ss_dssp             TTSEEEEEEECGGGHHHHHHHHHHTTC----EEEESTTTCSEEETTEECS-----------CHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCC----CEEEECCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCC
T ss_conf             877558861565656999999998099----7189447551079999994-----------8999999999999986999


Q ss_pred             -CCHHHHHHHHH
Q ss_conf             -89889999999
Q T0547           584 -VNDKQKKHILG  594 (611)
Q Consensus       584 -~~~~e~~~~l~  594 (611)
                       -+++|.+++|.
T Consensus       291 iAt~~eaR~~L~  302 (311)
T 3e02_A          291 IATPDEARAMLK  302 (311)
T ss_dssp             BCCHHHHHHHHT
T ss_pred             CCCHHHHHHHHC
T ss_conf             899999999858


No 64 
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=22.46  E-value=26  Score=12.94  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=31.8

Q ss_pred             HHHCCCCCCCEEE-----CC-C--CC---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf             9964899881787-----88-9--89---999999985423571048986688999999999998469862268888507
Q T0547           119 AMAYNNEGAPITV-----NG-F--KD---RELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLH  187 (611)
Q Consensus       119 ala~g~~~~~Ii~-----nG-~--Kd---~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~  187 (611)
                      |..+|.|.++|..     -| +  |.   .+.+..|+.+.+.|+-|.++.+-.+++..        ...+|..-.|++.+
T Consensus       250 A~~lgl~~~~V~V~~~~~GGgFG~K~~~~~~~~~aa~aa~~~grPVkl~~sRee~~~~--------~~~R~~~~~~~~~g  321 (809)
T 1n62_B          250 SLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLST--------TSFARDYHMTTELA  321 (809)
T ss_dssp             HHHHCCCGGGEEEECCBCSCCTTTTSSCCHHHHHHHHHHHHHSSCEEEECCHHHHHHH--------SCEECCEEEEEEEE
T ss_pred             HHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHCC--------CCCCCCCCCHHHCC
T ss_conf             3103688531799981246655665534578889999999869997992354673045--------78878741210000


Q ss_pred             CCCCC
Q ss_conf             88776
Q T0547           188 SAGVG  192 (611)
Q Consensus       188 ~~~~g  192 (611)
                      .+..|
T Consensus       322 ~~~dG  326 (809)
T 1n62_B          322 ATKDG  326 (809)
T ss_dssp             ECTTC
T ss_pred             CCCCC
T ss_conf             12588


No 65 
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure initiative, structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.43  E-value=27  Score=12.82  Aligned_cols=31  Identities=16%  Similarity=-0.043  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCHHHHHC
Q ss_conf             9999999999964899877887075677750
Q T0547           298 DVVFILKNIAEQKKDLEPDIFIESGRFVAAN  328 (611)
Q Consensus       298 ~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~  328 (611)
                      .+...+.+.|.+.++|.|++.+-+.+.+.|.
T Consensus        27 ~L~~~v~~la~~~gi~~P~v~v~~~~~~NAf   57 (107)
T 3cqb_A           27 WLLETVGRQAQQAGIGMPTVAIYDSADINAF   57 (107)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEECCSSEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCEE
T ss_conf             9999999999976989984999818986389


No 66 
>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} SCOP: c.56.4.1
Probab=21.72  E-value=14  Score=14.89  Aligned_cols=15  Identities=7%  Similarity=0.171  Sum_probs=6.5

Q ss_pred             EEEECCCCCCCHHHH
Q ss_conf             886338876788999
Q T0547           230 IHFHLGSQITEIHPL  244 (611)
Q Consensus       230 LHfHIGSQI~di~~~  244 (611)
                      +.-.-|+.+.|--.|
T Consensus       135 ~S~daG~YlCN~~yY  149 (215)
T 1aug_A          135 VSYTAGTFVCNHLFY  149 (215)
T ss_dssp             CBSCCCSSHHHHHHH
T ss_pred             ECCCCCCCCHHHHHH
T ss_conf             736733230368999


No 67 
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, cytoplasm, hydrolase, protease, thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp}
Probab=21.60  E-value=9.1  Score=16.33  Aligned_cols=12  Identities=17%  Similarity=0.462  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             653303244223
Q T0547           439 RYLVNFSLFQSM  450 (611)
Q Consensus       439 ~y~~NfS~Fqsl  450 (611)
                      +|+||+..|+||
T Consensus       141 ~ylCN~~yY~sL  152 (215)
T 3giu_A          141 TFVCNHTLYHLG  152 (215)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
T ss_conf             437779999999


No 68 
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3lm7_A
Probab=21.38  E-value=28  Score=12.67  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             85078877642204666564788989999999999866898734788863388767889999999999999999997179
Q T0547           184 VRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA  263 (611)
Q Consensus       184 v~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~  263 (611)
                      |.|.-...--++.||-..|+.-=..-.+..++..+++.+.- ++   -|.-=-.....+-++.-.+.|       .+.| 
T Consensus       120 vsPTG~~G~VkIsTGp~Ss~~~~~iV~vetAiaml~dmG~~-Si---Kffpm~Gl~~leE~~avAkac-------a~~g-  187 (249)
T 3m0z_A          120 VSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGS-SI---KYFPMGGLKHRAEFEAVAKAC-------AAHD-  187 (249)
T ss_dssp             EBCCSSTTEEECCCSTTGGGSSCCEEEHHHHHHHHHHTTCC-EE---EECCCTTTTTHHHHHHHHHHH-------HHTT-
T ss_pred             ECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EE---EEEECCCCCCHHHHHHHHHHH-------HHCC-
T ss_conf             65788651699456766556887634099999999974998-16---675067734199999999999-------9769-


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEE
Q ss_conf             940587245565547777777777788889999999999999999648998--7788
Q T0547           264 KNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE--PDIF  318 (611)
Q Consensus       264 ~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~--P~Ii  318 (611)
                        + +|-=-||...+               .|     ..+-++|-+.|+|.  |+|.
T Consensus       188 --~-~lEPTGGIdl~---------------N~-----~eI~~i~ldaGv~kviPHIY  221 (249)
T 3m0z_A          188 --F-WLEPTGGIDLE---------------NY-----SEILKIALDAGVSKIIPHIY  221 (249)
T ss_dssp             --C-EEEEBSSCCTT---------------TH-----HHHHHHHHHHTCSCBCCBCC
T ss_pred             --C-EECCCCCCCHH---------------HH-----HHHHHHHHHCCCCEECCCCC
T ss_conf             --1-67667985788---------------89-----99999999839983215200


No 69 
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=21.23  E-value=28  Score=12.65  Aligned_cols=55  Identities=7%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             999999998668987347888633887678899999999999999999971799405
Q T0547           211 LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLK  267 (611)
Q Consensus       211 i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~  267 (611)
                      +.++.+.+..++.  .+..++.+.+--..+......+++...+......++|++.+.
T Consensus        48 ~~~l~~~~~~~gl--~~~s~~~~~~~~~~~~~~~~~~~~~~k~~i~~a~~lG~~~i~  102 (278)
T 1i60_A           48 LDDLAEYFQTHHI--KPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVV  102 (278)
T ss_dssp             HHHHHHHHHTSSC--EEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHCCC--EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9999999998199--389996777778999899999999999999999982939899


No 70 
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=20.84  E-value=15  Score=14.67  Aligned_cols=15  Identities=13%  Similarity=0.051  Sum_probs=5.7

Q ss_pred             EEEECCCCCCCHHHH
Q ss_conf             886338876788999
Q T0547           230 IHFHLGSQITEIHPL  244 (611)
Q Consensus       230 LHfHIGSQI~di~~~  244 (611)
                      +.-.-|..+.|--.|
T Consensus       133 ~S~daG~YlCN~~~Y  147 (208)
T 1x10_A          133 ISNSAGLYLSNYVMY  147 (208)
T ss_dssp             EESCCCSSHHHHHHH
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             768667634458999


No 71 
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=20.43  E-value=29  Score=12.53  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
Q ss_conf             7999999999999999999970---8898723787453378789999999846667851662288999999964899881
Q T0547            52 PHLIQKQIENIYGNFNKARKEF---GYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAP  128 (611)
Q Consensus        52 ~dil~~ri~~l~~aF~~A~~~~---~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~  128 (611)
                      .+.++.+...+...|..++..+   +|+...-++||.=||-+..+++..+..|.+|  |+.......+..-+..      
T Consensus       103 ~~~v~~~f~~~~~~f~~~~~~F~~~~ye~~lLp~YaqaAnlhL~LLrD~i~~g~~W--g~~~~~~~~~~~~~~~------  174 (584)
T 1dlc_A          103 QGRIRELFSQAESHFRNSMPSFAISGYEVLFLTTYAQAANTHLFLLKDAQIYGEEW--GYEKEDIAEFYKRQLK------  174 (584)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHTTTT--TCCHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH------
T ss_conf             99999999999999999889866588421038999999999999999999866661--9988899999999999------


Q ss_pred             EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             78788989999999985423571
Q T0547           129 ITVNGFKDRELINIGFIAAEMGH  151 (611)
Q Consensus       129 Ii~nG~Kd~e~I~lAl~a~~lG~  151 (611)
                            +..+|...+....+.|.
T Consensus       175 ------~i~~Y~~~c~~~Y~~Gl  191 (584)
T 1dlc_A          175 ------LTQEYTDHCVKWYNVGL  191 (584)
T ss_dssp             ------HHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHH
T ss_conf             ------99999999999999999


Done!