Query T0547 BR53, unknown, 611 residues
Match_columns 611
No_of_seqs 261 out of 901
Neff 5.4
Searched_HMMs 22458
Date Fri May 21 18:10:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0547.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0547.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twi_A Diaminopimelate decarbo 100.0 0 0 466.7 39.0 422 8-562 1-426 (434)
2 2p3e_A Diaminopimelate decarbo 100.0 0 0 462.1 36.6 406 11-561 8-415 (420)
3 2o0t_A Diaminopimelate decarbo 100.0 0 0 455.8 34.8 436 4-568 8-453 (467)
4 2j66_A BTRK, decarboxylase; bu 100.0 0 0 437.1 35.1 412 27-570 4-424 (428)
5 2qgh_A Diaminopimelate decarbo 100.0 0 0 430.0 38.6 396 27-562 20-417 (425)
6 1f3t_A ODC, ornithine decarbox 100.0 0 0 436.9 32.1 397 18-539 8-409 (425)
7 3btn_A Antizyme inhibitor 1; T 100.0 0 0 437.1 29.5 401 11-540 2-408 (448)
8 7odc_A Protein (ornithine deca 100.0 0 0 420.4 35.3 395 18-540 10-410 (424)
9 2oo0_A ODC, ornithine decarbox 100.0 0 0 420.3 34.5 387 28-539 27-419 (471)
10 2plj_A Lysine/ornithine decarb 100.0 0 0 417.1 29.8 363 34-539 45-408 (419)
11 1knw_A Diaminopimelate decarbo 100.0 0 0 399.0 33.9 391 28-562 14-417 (425)
12 2nva_A Arginine decarboxylase, 100.0 0 0 396.4 32.8 366 33-538 3-372 (372)
13 2yxx_A Diaminopimelate decarbo 100.0 0 0 376.7 28.0 380 33-562 2-383 (386)
14 3gwq_A D-serine deaminase; YP_ 99.5 1.8E-10 7.9E-15 97.2 23.4 207 42-276 43-254 (426)
15 3llx_A Predicted amino acid al 99.3 1.5E-10 6.6E-15 97.7 17.1 207 42-282 11-226 (376)
16 1vfs_A Alanine racemase; TIM-b 98.4 0.00016 7.1E-09 52.2 19.3 195 43-272 4-207 (386)
17 3cpg_A Uncharacterized protein 98.2 0.0006 2.7E-08 47.9 22.5 201 42-264 9-234 (282)
18 1w8g_A YGGS, hypothetical UPF0 98.2 0.0006 2.7E-08 47.9 18.9 194 55-272 4-203 (234)
19 1xfc_A Alanine racemase; alpha 98.2 0.00055 2.5E-08 48.2 17.6 182 48-263 14-203 (384)
20 3co8_A Alanine racemase; prote 98.1 0.00063 2.8E-08 47.7 16.3 155 47-237 11-171 (380)
21 2vd8_A Alanine racemase; pyrid 98.0 0.0015 6.5E-08 45.0 19.6 185 45-263 10-201 (391)
22 3kw3_A Alanine racemase; niaid 98.0 0.00038 1.7E-08 49.4 13.6 158 47-237 22-183 (376)
23 1bd0_A Alanine racemase; isome 97.9 0.0016 6.9E-08 44.8 16.1 165 45-243 6-177 (388)
24 1rcq_A Catabolic alanine racem 97.9 0.0023 1E-07 43.4 16.9 154 47-237 5-162 (357)
25 3hur_A Alanine racemase; struc 97.9 0.0024 1.1E-07 43.3 17.4 179 43-259 6-191 (395)
26 3e5p_A Alanine racemase; ALR, 97.9 0.0018 8.1E-08 44.3 15.9 165 43-239 5-175 (371)
27 2rjg_A Alanine racemase; alpha 97.5 0.0033 1.4E-07 42.3 12.7 160 43-238 21-184 (379)
28 2dy3_A Alanine racemase; alpha 97.4 0.01 4.7E-07 38.5 17.7 179 48-263 6-189 (361)
29 1ct5_A Protein (yeast hypothet 89.7 1 4.5E-05 23.5 23.5 195 55-269 14-218 (256)
30 2o57_A Putative sarcosine dime 62.9 5.7 0.00026 17.8 3.5 56 124-183 81-137 (297)
31 2g5x_A Lychnin, ribosome-inact 52.0 8.5 0.00038 16.6 2.9 29 516-544 89-117 (234)
32 3bus_A REBM, methyltransferase 49.7 6.7 0.0003 17.3 2.1 59 122-184 57-117 (273)
33 1oo2_A Transthyretin; retinol- 44.3 12 0.00054 15.4 2.7 75 465-551 24-103 (119)
34 1w99_A Pesticidial crystal pro 41.6 5.3 0.00023 18.1 0.5 64 52-117 60-127 (558)
35 3ivs_A Homocitrate synthase, m 39.6 14 0.00063 14.9 11.9 31 206-238 206-236 (423)
36 2wc1_A Flavodoxin; electron tr 38.2 15 0.00066 14.7 3.3 111 187-315 56-181 (182)
37 3chv_A Prokaryotic domain of u 38.0 15 0.00067 14.7 7.7 45 204-252 29-77 (284)
38 1yle_A Arginine N-succinyltran 37.6 15 0.00067 14.7 4.1 63 21-86 4-66 (342)
39 2d1z_A Endo-1,4-beta-D-xylanas 37.0 15 0.00069 14.6 3.6 56 209-272 183-240 (436)
40 1w32_A Endo-1,4-beta-xylanase 34.5 17 0.00075 14.3 8.0 61 208-276 191-255 (348)
41 1kpg_A CFA synthase;, cyclopro 34.0 17 0.00076 14.3 2.7 26 374-399 255-280 (287)
42 1x13_A NAD(P) transhydrogenase 33.6 13 0.00059 15.1 1.5 21 470-490 280-300 (401)
43 2gmw_A D,D-heptose 1,7-bisphos 33.3 18 0.00078 14.2 11.4 131 29-168 53-204 (211)
44 3c6c_A 3-keto-5-aminohexanoate 30.7 19 0.00086 13.9 5.2 65 203-280 42-111 (316)
45 2qkg_A Insecticidal delta-endo 30.5 14 0.00062 15.0 1.2 57 53-111 103-162 (589)
46 2ebj_A Pyrrolidone carboxyl pe 29.6 8.8 0.00039 16.4 0.0 12 439-450 136-147 (192)
47 1iu8_A Pyrrolidone-carboxylate 28.9 5.6 0.00025 17.9 -1.0 17 229-245 129-145 (206)
48 1ffv_B CUTL, molybdoprotein of 28.3 16 0.00073 14.4 1.2 67 118-192 246-323 (803)
49 3hww_A 2-succinyl-5-enolpyruvy 28.2 15 0.00069 14.6 1.1 89 510-598 436-551 (556)
50 2w5f_A Endo-1,4-beta-xylanase 28.1 21 0.00094 13.6 4.9 24 213-239 250-274 (540)
51 1ta3_B Endo-1,4-beta-xylanase; 27.8 21 0.00095 13.5 6.7 37 210-246 185-221 (303)
52 2hiy_A Hypothetical protein; C 27.6 22 0.00096 13.5 3.8 130 17-171 44-182 (183)
53 2uwf_A Endoxylanase, alkaline 25.8 23 0.001 13.3 7.7 12 229-240 222-233 (356)
54 1phz_A Protein (phenylalanine 24.8 24 0.0011 13.1 2.7 40 320-363 249-288 (429)
55 2qw5_A Xylose isomerase-like T 24.6 24 0.0011 13.1 15.5 16 30-45 32-47 (335)
56 3lac_A Pyrrolidone-carboxylate 24.3 15 0.00068 14.6 0.5 16 230-245 134-149 (215)
57 1fkm_A Protein (GYP1P), ORF YO 24.3 17 0.00075 14.3 0.7 87 367-456 305-391 (396)
58 1j8u_A Phenylalanine-4-hydroxy 24.0 25 0.0011 13.0 2.2 22 321-342 148-169 (325)
59 2h4e_A Transthyretin; amyloid, 23.6 25 0.0011 13.0 3.6 75 465-551 32-111 (127)
60 3e49_A Uncharacterized protein 23.4 25 0.0011 13.0 4.7 73 507-594 227-302 (311)
61 3d6j_A Putative haloacid dehal 23.0 26 0.0012 12.9 4.8 13 63-75 25-37 (225)
62 1us2_A Xylanase10C, endo-beta- 22.8 26 0.0012 12.9 5.3 35 191-229 213-247 (530)
63 3e02_A Uncharacterized protein 22.6 26 0.0012 12.8 6.2 74 506-594 226-302 (311)
64 1n62_B Carbon monoxide dehydro 22.5 26 0.0011 12.9 1.3 66 119-192 250-326 (809)
65 3cqb_A Probable protease HTPX 22.4 27 0.0012 12.8 3.0 31 298-328 27-57 (107)
66 1aug_A Pyroglutamyl peptidase- 21.7 14 0.00063 14.9 -0.1 15 230-244 135-149 (215)
67 3giu_A Pyrrolidone-carboxylate 21.6 9.1 0.0004 16.3 -1.1 12 439-450 141-152 (215)
68 3m0z_A Putative aldolase; MCSG 21.4 28 0.0012 12.7 4.9 100 184-318 120-221 (249)
69 1i60_A IOLI protein; beta barr 21.2 28 0.0012 12.6 11.8 55 211-267 48-102 (278)
70 1x10_A Pyrrolidone-carboxylate 20.8 15 0.00067 14.7 -0.1 15 230-244 133-147 (208)
71 1dlc_A Delta-endotoxin CRYIIIA 20.4 29 0.0013 12.5 1.4 86 52-151 103-191 (584)
No 1
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=0 Score=466.68 Aligned_cols=422 Identities=24% Similarity=0.340 Sum_probs=347.3
Q ss_pred CCCCCCCEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 67788743306746872788888899999998557998589874799999999999999999997088987237874533
Q T0547 8 IWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKV 87 (611)
Q Consensus 8 ~Wg~~yF~i~~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKa 87 (611)
.||+..|++.+|++++ +++++.||+++ ||||+||++++.|+++++++++||+++..+++ .+++++||+||
T Consensus 1 ~~~~~~~~~~~~~l~~---~~~~~~~la~~-----~GTP~yV~d~~~i~~n~~~l~~af~~~~~~~g--~~~~v~YAvKa 70 (434)
T 1twi_A 1 MLGNDTVEIKDGRFFI---DGYDAIELAEK-----FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG--KEFIVAYAYKA 70 (434)
T ss_dssp CTTCTTEEEETTEEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHS--CCEEEEEEGGG
T ss_pred CCCCCEEEEECCEEEE---CCEEHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECC
T ss_conf 9888818998999999---99579999997-----69988998799999999999998877676238--86499998634
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 7878999999984666785166228899999996489988178788-989999999985423571048986688999999
Q T0547 88 NQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAI 166 (611)
Q Consensus 88 N~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I 166 (611)
|+++.|++.+.+.| +|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+. .|++ .+++||.+|++++
T Consensus 71 N~~~~vl~~l~~~G----~G~dvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~l~~A~~---~gv~-~~~~ds~~el~~i 142 (434)
T 1twi_A 71 NANLAITRLLAKLG----CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE---ANIR-AFNVDSISELILI 142 (434)
T ss_dssp CCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCS-EEEECSHHHHHHH
T ss_pred CCCHHHHHHHHHHC----CCEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH---CCEE-EEECCCHHHHHHH
T ss_conf 89899999999839----98499789999987531257422345566430666667876---7860-3322203566666
Q ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHH--HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 999998469862268888507887764-22046665647889899--999999998668987347888633887678899
Q T0547 167 IDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTE--LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHP 243 (611)
Q Consensus 167 ~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~ 243 (611)
.+++++ .+.++++++|++|.....++ ...+++..||||++.++ ....+....+...+ .+.|+|||+|||+.+...
T Consensus 143 ~~~~~~-~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~~~~~~~~l-~~~GlhfHvgS~~~~~~~ 220 (434)
T 1twi_A 143 NETAKE-LGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYV-NVVGVHCHIGSQLTDISP 220 (434)
T ss_dssp HHHHHH-HTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHHHCSSE-EEEEEECCCCSSBCCSHH
T ss_pred HHHHHH-CCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCH
T ss_conf 667887-099855012214676756663242254222456530013678999998874136-555620333012244306
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999999997179940587245565547777777777788889999999999999999648998778870756
Q T0547 244 LKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGR 323 (611)
Q Consensus 244 ~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGR 323 (611)
+..+++.+..++.++++.|. .+++||+||||+++|....... +...++..+...... .....+.|+|++||||
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~-~~~~ldiGGG~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~l~~EPGR 293 (434)
T 1twi_A 221 FIEETRKVMDFVVELKEEGI-EIEDVNLGGGLGIPYYKDKQIP----TQKDLADAIINTMLK--YKDKVEMPNLILEPGR 293 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCSEEECCCCBCCCSSSSSCCC----CHHHHHHHHHHHHHT--TTTTSCCCEEEECCSH
T ss_pred HHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC----HHHHHHHHHHHHHHH--HHCCCCCCEEEECCCC
T ss_conf 89999999999999998399-8047640366664323565321----024431012332221--1024677569833872
Q ss_pred HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77750411455221022356666545565445178999999997307434688999999999999999736966789998
Q T0547 324 FVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRS 403 (611)
Q Consensus 324 aivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra 403 (611)
|+||.+++||++|++++......
T Consensus 294 ~lva~ag~lvt~V~~~k~~~~~~--------------------------------------------------------- 316 (434)
T 1twi_A 294 SLVATAGYLLGKVHHIKETPVTK--------------------------------------------------------- 316 (434)
T ss_dssp HHHGGGEEEEEEEEEEEECSSCE---------------------------------------------------------
T ss_pred EEEECCCCCEEEEEEEECCCCCC---------------------------------------------------------
T ss_conf 13214423057899852258762---------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 99999999999999851234560467888888755653303244223101000663120135467888651048733643
Q T0547 404 NAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITC 483 (611)
Q Consensus 404 ~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTC 483 (611)
+++++-|+..++++.|-. ..+|+.+...- .+.....+++-||
T Consensus 317 -----------------------------------~~~~d~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~i~G~tC 358 (434)
T 1twi_A 317 -----------------------------------WVMIDAGMNDMMRPAMYE-AYHHIINCKVK--NEKEVVSIAGGLC 358 (434)
T ss_dssp -----------------------------------EEEESCCTTTCCHHHHHC-CCCCEEESBCC--SCEEEEEEECSSS
T ss_pred -----------------------------------EEEECCCCCCCCCCHHHC-CCCCEEEECCC--CCCCEEEEEEECC
T ss_conf -----------------------------------699713467877530200-01100220268--9961799994488
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf 7466301467776556778887896078886020699974775156789857999988996288751378878999987
Q T0547 484 DSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 562 (611)
Q Consensus 484 DSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~ 562 (611)
||...+... .+|+++.. | -+|-|..+|||.-.+....|-|..+.+|-|+ +++.. -+.+.+|.+|+++.
T Consensus 359 ~s~D~l~~~----~~lp~l~~-G--D~l~f~~~GAY~~~~~s~FN~~~~p~~v~v~--~~~~~--~ir~~~t~ed~~~~ 426 (434)
T 1twi_A 359 ESSDVFGRD----RELDKVEV-G--DVLAIFDVGAYGISMANNYNARGRPRMVLTS--KKGVF--LIRERETYADLIAK 426 (434)
T ss_dssp CTTCEEEEE----EEEECCCT-T--CEEEEECCSSSSGGGCBCTTTCCCCEEEEEE--TTEEE--EEECCCCHHHHTTT
T ss_pred CCCCEECCC----CCCCCCCC-C--CEEEECCCCCCCHHHCCCCCCCCCCCEEEEE--CCEEE--EEECCCCHHHHHHC
T ss_conf 897689945----30688998-9--9999949850438464766799988299998--99089--99768999999746
No 2
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=462.07 Aligned_cols=406 Identities=22% Similarity=0.332 Sum_probs=335.1
Q ss_pred CCCCEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 88743306746872788888899999998557998589874799999999999999999997088987237874533787
Q T0547 11 NENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQY 90 (611)
Q Consensus 11 ~~yF~i~~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~ 90 (611)
.+||+..+|++++ +++++.+|+++ ||||+||++++.|++++++++++|+. .+++||+|||++
T Consensus 8 ~~~~~~~~~~l~~---~~~~l~~l~~~-----~gTP~yv~d~~~i~~n~~~l~~a~p~----------~~i~YAvKaN~~ 69 (420)
T 2p3e_A 8 NPYLEYRDGELFI---EGVSLKELAQT-----FGTPLYVYSSNFIKERFEAYRKAFPD----------ALICYAVKANFN 69 (420)
T ss_dssp CTTEEEETTEEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHSTT----------SEEEEEGGGCCC
T ss_pred CCCCEEECCEEEE---CCCCHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEECCCCC
T ss_conf 8651698999999---99019999996-----39988998999999999999986899----------889999666899
Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf 8999999984666785166228899999996489988178788-989999999985423571048986688999999999
Q T0547 91 PGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDI 169 (611)
Q Consensus 91 ~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~i 169 (611)
+.|++.+.+.| .|+||+|.+|+.+|+++|+++++|+++| +|++++++.|+. .|.. ++++||.+|+++|.+.
T Consensus 70 ~~vl~~l~~~G----~g~dvaS~~El~~al~~G~~~~~Ii~~~p~k~~~~i~~a~~---~gv~-~~~~ds~~El~~i~~~ 141 (420)
T 2p3e_A 70 PHLVKLLGELG----AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD---SEIL-MFNVESRQELDVLNEI 141 (420)
T ss_dssp HHHHHHHHHTT----CEEEESSHHHHHHHHHTTCCGGGEEECSSCCCHHHHHHHHH---TTCS-EEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHCC----CCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HHCC-CCCCCCHHHHHHHHHH
T ss_conf 89999999819----98289858999999985999110687466531367899987---4012-3455778888999988
Q ss_pred HHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 998469862268888507887764-2204666564788989999999999866898734788863388767889999999
Q T0547 170 AKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKAL 248 (611)
Q Consensus 170 a~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai 248 (611)
+++ .+..++|+||+||.....++ +..+++..||||++.+++..++..+++...+ .+.|||||+|||+.+++.|+.++
T Consensus 142 ~~~-~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~~~~~~l-~~~GlHfH~gS~~~~~~~~~~~~ 219 (420)
T 2p3e_A 142 AGK-LGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENL-EIVGIHCHIGSQILDISPYREAV 219 (420)
T ss_dssp HHH-HTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHHTCTTE-EEEEEECCCCSSBSSCTHHHHHH
T ss_pred HHH-CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCHHHHHHHH
T ss_conf 874-3999679999834877667756557776555564305668888887654797-38999980898769838988778
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHC
Q ss_conf 99999999999717994058724556554777777777778888999999999999999964899877887075677750
Q T0547 249 NEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAAN 328 (611)
Q Consensus 249 ~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~ 328 (611)
+++.+++.++.+.|. .+++||+||||+++|....... ..+.+.. ..+.....+.|+|++|||||+||+
T Consensus 220 ~~~~~~~~~~~~~g~-~l~~idiGGG~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~l~~EPGR~lva~ 287 (420)
T 2p3e_A 220 EKVVSLYESLTQKGF-DIKYLDIGGGLGIKYKPEDKEP----APQDLAD-------LLKDLLENVKAKIILEPGRSIMGN 287 (420)
T ss_dssp HHHHHHHHHHHHTTC-CCCEEECCCCBCCCCSTTCCCC----CHHHHHH-------HHTTTC--CCSEEEECCSHHHHGG
T ss_pred HHHHHHHHHHHHHCC-CCCEEECCCCCCCCCCCCCCCC----CHHHHHH-------HHHHHHHCCCCEEEEEECCEEEEC
T ss_conf 999999998887299-8554530676475677654431----0466789-------999876455877999215357506
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 41145522102235666654556544517899999999730743468899999999999999973696678999899999
Q T0547 329 HAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEIL 408 (611)
Q Consensus 329 ~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l 408 (611)
+++||++|++++......
T Consensus 288 ag~lv~~V~~~k~~~~~~-------------------------------------------------------------- 305 (420)
T 2p3e_A 288 AGILITQVQFLKDKGSKH-------------------------------------------------------------- 305 (420)
T ss_dssp GEEEEEEEEEEEEETTEE--------------------------------------------------------------
T ss_pred EEEEEEEEEEEEECCCEE--------------------------------------------------------------
T ss_conf 189999999998479817--------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99999999985123456046788888875565330324422310100066312013546788865104873364374663
Q T0547 409 THLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGE 488 (611)
Q Consensus 409 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~ 488 (611)
++++|-+++..+..+|- +..+++.|... ++.+.....+++-||||...
T Consensus 306 ------------------------------~~~vd~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~i~G~tC~~~D~ 353 (420)
T 2p3e_A 306 ------------------------------FIIVDAGMNDLIRPSIY-NAYHHIIPVET-KERKKVVADIVGPICETGDF 353 (420)
T ss_dssp ------------------------------EEEESCCTTTCCHHHHH-CCCCCEEESBC-CC---CEEEEECSSSSTTCE
T ss_pred ------------------------------EEEEECCCCCCCCHHHH-CCCCCEECCCC-CCCCCEEEEEEECCCCCCCE
T ss_conf ------------------------------99995675775564562-24421000114-77882279999717888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHH
Q ss_conf 0146777655677888789607888602069997477515678985799998899628875137887899998
Q T0547 489 ISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLE 561 (611)
Q Consensus 489 i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~ 561 (611)
+-. ..+|++++. |. +|.|..+|||.-.+...+|-|..+.+|.|+ +| .++-+.+.+|.+|++.
T Consensus 354 l~~----~~~lp~l~~-GD--~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~---~g-~~~lir~ret~ed~~~ 415 (420)
T 2p3e_A 354 LAL----DREIEEVQR-GE--YLAVLSAGAYGFAMSSHYNMRPRAAEVLVE---NG-SVKLIRKRENYDYIVE 415 (420)
T ss_dssp EEE----EEECCCCCT-TC--EEEECSCTTTTGGGCBCGGGCCCCEEEEEE---TT-EEEEEECCCCHHHHHG
T ss_pred EEE----CCCCCCCCC-CC--EEEECCCCHHHHHHHCCCCCCCCCCEEEEE---CC-EEEEEECCCCHHHHHH
T ss_conf 904----663788999-99--999869673246563745489998589998---99-7999976899999986
No 3
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=0 Score=455.79 Aligned_cols=436 Identities=18% Similarity=0.240 Sum_probs=352.9
Q ss_pred CCCCCCCCCCCEEE-CCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 87676778874330-67468727888888999999985579985898747999999999999999999970889872378
Q T0547 4 YGIDIWGNENFIIK-NGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAV 82 (611)
Q Consensus 4 Y~i~~Wg~~yF~i~-~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~v 82 (611)
|=-++|=-..+..+ +|+|++ ++++|.+|+++ ||||+||++++.|+++++++++||. ...+++
T Consensus 8 ~~~p~~~~~~~~~~~~g~l~~---~g~~l~~La~~-----~GTP~yV~d~~~i~~n~~~l~~a~~---------~~~~i~ 70 (467)
T 2o0t_A 8 HLAPNVWPRNTTRDEVGVVCI---AGIPLTQLAQE-----YGTPLFVIDEDDFRSRCRETAAAFG---------SGANVH 70 (467)
T ss_dssp CCCTTTSCTTEEECSSSCEEE---TTEEHHHHHHH-----HCSSEEEEEHHHHHHHHHHHHHHTS---------SGGGBE
T ss_pred CCCCCCCCCCCEECCCCEEEE---CCEEHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCC---------CCCEEE
T ss_conf 478551788541889997999---99749999997-----6999899889999999999998558---------998799
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 745337878999999984666785166228899999996489988178788-9899999999854235710489866889
Q T0547 83 YPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLN 161 (611)
Q Consensus 83 YaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~ 161 (611)
||+|||+++.|++.+.+.| +|+||+|.+|+.+|+++|+++++|+||| .|++++|+.|+.. |.. .+++||++
T Consensus 71 YAvKaN~~~~vl~~l~~~G----~G~dvaS~~El~~al~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~-~i~~Ds~~ 142 (467)
T 2o0t_A 71 YAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKA---GVG-HIVVDSMT 142 (467)
T ss_dssp EEGGGCCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHH---TCS-EEEECSHH
T ss_pred EEECCCCCHHHHHHHHHCC----CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH---CCE-EEEECCHH
T ss_conf 9875489899999999819----979998999999999749896629982898999999998862---551-78867789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHH--HHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 99999999998469862268888507887764-22046665647889899--9999999986689873478886338876
Q T0547 162 ELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTSTE--LIEAVNLLKENKLLEQFTMIHFHLGSQI 238 (611)
Q Consensus 162 EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI 238 (611)
||+++.+++++ .++.+++++|+++.....++ ...+++..+|||++.++ +...+..+.....+ .+.|+|||+|||+
T Consensus 143 El~~i~~~~~~-~~~~~~i~lrl~~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~~~~~~~~~-~l~Glh~H~gS~~ 220 (467)
T 2o0t_A 143 EIERLDAIAGE-AGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHL-RLVGLHSHIGSQI 220 (467)
T ss_dssp HHHHHHHHHHH-HTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHHHHCSSE-EEEEEECCCEEEE
T ss_pred HHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCC
T ss_conf 99999998776-298742222026886555542223576544567540135789999999736698-4788998528887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7889999999999999999997----179940587245565547777777777788889999999999999999648998
Q T0547 239 TEIHPLKKALNEAGNIYTELRK----MGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE 314 (611)
Q Consensus 239 ~di~~~~~ai~ea~~ly~eL~~----~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~ 314 (611)
.|++.|..+++.+..++.++.+ ..+..++++|+|||||++|.....+. +++.|+..+...+++.+...+.+.
T Consensus 221 ~d~~~~~~a~~~~~~l~~~~~~~~~~~~~~~l~~ld~GGG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (467)
T 2o0t_A 221 FDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPP----PIAELAAKLGTIVSDESTAVGLPT 296 (467)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCC----CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7708899999999998888998655650766331034078676777777776----378899999999998753205667
Q ss_pred CEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77887075677750411455221022356666545565445178999999997307434688999999999999999736
Q T0547 315 PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDL 394 (611)
Q Consensus 315 P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~ 394 (611)
|+|++|||||+||.+++||++|+.++......... .
T Consensus 297 ~~l~~EPGR~lv~~ag~lvt~V~~~k~~~~k~~~~----~---------------------------------------- 332 (467)
T 2o0t_A 297 PKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAH----R---------------------------------------- 332 (467)
T ss_dssp CEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCE----E----------------------------------------
T ss_pred CEEEEECCEEEECCCCEEEEEEEEEEEECCCCCCC----E----------------------------------------
T ss_conf 51899557266236403899999987411223386----5----------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96678999899999999999999851234560467888888755653303244223101000663120135467888651
Q T0547 395 GYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTR 474 (611)
Q Consensus 395 G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~ 474 (611)
..+.++-+....++.+| .+..+|+.++.+..+.+..
T Consensus 333 -------------------------------------------~~v~~D~g~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 368 (467)
T 2o0t_A 333 -------------------------------------------RYVSVDGGMSDNIRTAL-YGAQYDVRLVSRVSDAPPV 368 (467)
T ss_dssp -------------------------------------------EEEEESCCTTTCCHHHH-HCCCCCEEECSSCCCSCEE
T ss_pred -------------------------------------------EEEEECCCCCCCCCHHH-HCCCCCEEECCCCCCCCEE
T ss_conf -------------------------------------------89998765545667566-0774634852577889757
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 04873364374663014677765567788878960788860206999747751567898579999889962887513788
Q T0547 475 SASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQ 554 (611)
Q Consensus 475 ~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gd 554 (611)
...+++-||+|...+-. +..+| .++. .|. +|.|+.+|||+-.+...+|.|+.+-+|-|+ ++.. +-+.+.+
T Consensus 369 ~~~v~GptC~s~D~l~~--~~~lP-~~l~-~GD--~l~~~~~GAY~~s~ss~fN~~~~P~~v~i~--~g~~--~lirrre 438 (467)
T 2o0t_A 369 PARLVGKHCESGDIIVR--DTWVP-DDIR-PGD--LVAVAATGAYCYSLSSRYNMVGRPAVVAVH--AGNA--RLVLRRE 438 (467)
T ss_dssp EEEEECSSSSTTCEEEE--EEEEE-TTCC-TTC--EEEESCCSSSSSTTCBCGGGCCCCEEEEEE--TTEE--EEEECCC
T ss_pred EEEEEECCCCCCCEEEE--CCCCC-CCCC-CCC--EEEECCCCHHHHHHHCCCCCCCCCCEEEEE--CCEE--EEEECCC
T ss_conf 99999718898779904--54478-8899-999--999859213257774726699998389999--9969--9998889
Q ss_pred CHHHHHHH-HCCCHH
Q ss_conf 78999987-285888
Q T0547 555 SILDTLED-LDYDIH 568 (611)
Q Consensus 555 t~~~vL~~-v~y~~~ 568 (611)
|.+|+++. ++-.|+
T Consensus 439 t~ed~~~~~~~~~p~ 453 (467)
T 2o0t_A 439 TVDDLLSLEVRGVPR 453 (467)
T ss_dssp CHHHHHTTBCC----
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 999998534201876
No 4
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=0 Score=437.12 Aligned_cols=412 Identities=18% Similarity=0.250 Sum_probs=323.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 88888999999985579985898747999999999999999999970889872378745337878999999984666785
Q T0547 27 KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNY 106 (611)
Q Consensus 27 ~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~ 106 (611)
.+.+|.+|+++ ||||+||++++.|++++++++++|. ...+++||+|||+++.|++.+.+.| .
T Consensus 4 ~~~~l~~la~~-----~gTP~yv~d~~~i~~n~~~l~~~~~---------~~~~i~yA~KaN~~~~vl~~l~~~g----~ 65 (428)
T 2j66_A 4 DQAEITALTKR-----FETPFYLYDGDFIEAHYRQLRSRTN---------PAIQFYLSLKANNNIHLAKLFRQWG----L 65 (428)
T ss_dssp CHHHHHHHHHH-----SCSSEEEEEHHHHHHHHHHHHHTSC---------TTEEEEEEGGGCCCHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEECCCCCHHHHHHHHHCC----C
T ss_conf 64329999984-----1999899889999999999985268---------9978999874279999999999819----9
Q ss_pred EEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 166228899999996489988178788-9899999999854235710489866889999999999984698622688885
Q T0547 107 GLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 185 (611)
Q Consensus 107 GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~ 185 (611)
|+||+|.+|+.+|+++|+++++|+||| +|++++++.|+. .|.. ++++|+.+|+++|...++. .++..++++|++
T Consensus 66 g~dv~S~~El~~al~~G~~~~~i~~~gp~k~~~~l~~a~~---~gv~-~~~~ds~~~~~~i~~~~~~-~~~~~~v~~r~~ 140 (428)
T 2j66_A 66 GVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQ---SGIY-CIIAESVEELFYIEELAEK-ENKTARVAIRIN 140 (428)
T ss_dssp EEEESSHHHHHHHHHTTCCGGGEEECCSCCCHHHHHHHHH---HTCS-EEEECSHHHHHHHHHHHHH-HTCCEEEEEEEE
T ss_pred CEEEECHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHH---CCEE-EECCCCHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf 1997599999999985999322898788664999877762---5804-3126899999999998875-398627997327
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 07887764220466656478898999999999986689873478886338876788999999999999999999717994
Q T0547 186 LHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN 265 (611)
Q Consensus 186 l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~ 265 (611)
+.......+..+|+..+|||++.+++.+++..++....+ .+.|+|||+|||+.+.+.|.++++++.+++..+.+..+..
T Consensus 141 ~~~~~~~~~~~~g~~~~kfg~~~~~~~~~~~~~~~~~~~-~~~GlH~h~GS~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 219 (428)
T 2j66_A 141 PDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFT-KFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIV 219 (428)
T ss_dssp CSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHCTTE-EEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 875520122212666543564202348899876531566-2688687378775411569999999999999999964996
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf 05872455655477777777777888899999999999999996489987788707567775041145522102235666
Q T0547 266 LKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYA 345 (611)
Q Consensus 266 l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~ 345 (611)
+++||+||||+++|.....+ +++++|+..+...++.. .+...|.|+|++|||||+||++++||++|++++.....
T Consensus 220 ~~~ldiGGG~~~~~~~~~~~----~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~ 294 (428)
T 2j66_A 220 CECINLGGGFGVPYFSHEKA----LDIGKITRTVSDYVQEA-RDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGE 294 (428)
T ss_dssp CSEEECCCCBCCCCC--CCC----CCHHHHHHHHHHHHHHH-HTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTE
T ss_pred CCEECCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHH-HHHCCCCCEEEEECCEEEEHHCCCEEEEEEEEECCCCC
T ss_conf 41212367767664335663----20788999999999987-75138874699724433601115367899997147984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 65455654451789999999973074346889999999999999997369667899989999999999999985123456
Q T0547 346 ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQN 425 (611)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~ 425 (611)
..
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (428)
T 2j66_A 295 VF------------------------------------------------------------------------------ 296 (428)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
T ss_conf 69------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-----CCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 0467888888755653303244223101000-----66312013546-78886510487336437466301467776556
Q T0547 426 PADLLAIQDEVQERYLVNFSLFQSMPDFWGL-----EQNFPIMPLDR-LDEEPTRSASIWDITCDSDGEISYSKDKPLFL 499 (611)
Q Consensus 426 ~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai-----~Q~Fpi~Pl~r-l~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~l 499 (611)
+.++-+....+++.|-- .+..+..|+.. -..++....+|++-||+|...+-. ..+|
T Consensus 297 --------------~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~tC~~~D~l~~----~~~l 358 (428)
T 2j66_A 297 --------------VIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGK----DVHV 358 (428)
T ss_dssp --------------EEESCCTTTCTTC-----------CEEEEC---------CEEEEEECSSSSTTCEEEE----EEEE
T ss_pred --------------EEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEECC----CCCC
T ss_conf --------------9984500035652433632122330477740377777884179998659997526632----5547
Q ss_pred CCCCCCCCCEEEEEEECCHHHHHHCCCC-CCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH-HCCCHHHH
Q ss_conf 7788878960788860206999747751-56789857999988996288751378878999987-28588899
Q T0547 500 HDVDVEKENYFLGFFLVGAYQEVLGMKH-NLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED-LDYDIHAI 570 (611)
Q Consensus 500 h~~~~~~e~y~lG~FlvGAYQeiLGd~H-NLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~-v~y~~~~l 570 (611)
++++. |. +|.|+.+|||+..|+..| |-+..+-+|. ++++.+++ +.+.+|.+|++.. ++++..-|
T Consensus 359 p~l~~-GD--~l~f~~~GAY~~s~s~~~fn~~p~p~~vl--~~~g~~~l--ir~ret~ed~~~~~~~~~~~~~ 424 (428)
T 2j66_A 359 PALYP-GD--LVCVLNSGAYGLSFSPVHFLGHPTPIEIL--KRNGSYEL--IRRKGTADDIVATQLQTESNLL 424 (428)
T ss_dssp SCCCT-TC--EEEESSCSSSSGGGSCTTGGGCCCCEEEE--EETTEEEE--EECCCCHHHHHGGGC-------
T ss_pred CCCCC-CC--EEEEECCCCCHHHHHCHHHCCCCCCCEEE--EECCEEEE--EECCCCHHHHHHCCCCCCCCCC
T ss_conf 88999-99--99991886315656021223999980999--98998999--9788989999855134543531
No 5
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=0 Score=429.97 Aligned_cols=396 Identities=21% Similarity=0.269 Sum_probs=321.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 88888999999985579985898747999999999999999999970889872378745337878999999984666785
Q T0547 27 KKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNY 106 (611)
Q Consensus 27 ~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~ 106 (611)
...++.+|+++ +|||+||++++.|++++++++++|+. -..++.||+|||+++.|++.+.+.| +
T Consensus 20 ~~~~~~~l~~~-----~gTP~yv~d~~~l~~n~~~l~~a~~~--------~~~~v~YAvKaN~~~~vl~~l~~~G----~ 82 (425)
T 2qgh_A 20 HMFNYEELFQT-----HKTPFYLYDFDKIKQAFLNYKEAFKG--------RKSLICYALKANSNLSILSLLAHLE----S 82 (425)
T ss_dssp ---CHHHHHHH-----CCSSEEEEEHHHHHHHHHHHHHTTCS--------SCEEEEEEGGGCCCHHHHHHHHHTT----C
T ss_pred CCCCHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHHHHHHHHHCC----C
T ss_conf 54899999871-----49988997699999999999985799--------9975999984289999999999849----9
Q ss_pred EEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 166228899999996489988178788-9899999999854235710489866889999999999984698622688885
Q T0547 107 GLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVR 185 (611)
Q Consensus 107 GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~ 185 (611)
|+||+|++|+.+|+++|+++.+|+|+| +|+.++++.|+. .|.. ++++||++|+++|.+++++ .+++++++||++
T Consensus 83 g~dvaS~~El~~al~~G~~~~~ii~~g~~k~~~~i~~a~~---~~v~-~~~~ds~~el~~l~~~~~~-~~~~~~v~lRin 157 (425)
T 2qgh_A 83 GADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK---LNIL-FLNVESFMELKTIETIAQS-LGIKARISIRIN 157 (425)
T ss_dssp EEEESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHH---TTCS-EEEECSHHHHHHHHHHHHH-HTCCEEEEEEBC
T ss_pred CEEEECHHHHHHHHHCCCCHHHCEECCCCCCHHHHHHHHH---CCEE-EEEEECHHHHHHHHHHHHH-CCCCCEEEEEEE
T ss_conf 5998299999999975998001332155477899999875---0324-6663031157899999886-299727999983
Q ss_pred ECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 07887764-22046665647889899999999998668987347888633887678899999999999999999971799
Q T0547 186 LHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK 264 (611)
Q Consensus 186 l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~ 264 (611)
|.....++ +..+|+..||||++..++.+.+..++....+ .+.|+|||+|||+.+...++.+++.+..++.++...|.
T Consensus 158 p~~~~~~~~~~~~g~~~skfG~~~~~~~~~~~~~~~~~~l-~~~GlhfH~gS~~~~~~~~~~ai~~~~~~~~~~~~~g~- 235 (425)
T 2qgh_A 158 PNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFL-EPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI- 235 (425)
T ss_dssp CCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHHCSSE-EEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 6887566755046765575771167888998754411534-78899974787767607789999888999999998389-
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCC
Q ss_conf 40587245565547777777777788889999999999999999648998778870756777504114552210223566
Q T0547 265 NLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY 344 (611)
Q Consensus 265 ~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~ 344 (611)
.++++|+||||+++|...... +..+++..+. ....-+.+++++||||++||.+++||++|+++|....
T Consensus 236 ~l~~idiGGG~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~ 303 (425)
T 2qgh_A 236 DLRFFDVGGGIGVSYENEETI-----KLYDYAQGIL-------NALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQN 303 (425)
T ss_dssp CCCEEECCCCBCCCTTSCCCC-----CHHHHHHHHH-------HHTTTCCCEEEECCCHHHHTTTEEEEEEEEEEEC--C
T ss_pred CCCEEEECCCCCCCCCCCCCH-----HHHHHHHHHH-------HHHHCCCCEEEEEECCEEEECCCEEEEEEEEEEECCC
T ss_conf 875345468667788764302-----4899999999-------9861457536740012786336089999999974299
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 66545565445178999999997307434688999999999999999736966789998999999999999998512345
Q T0547 345 AENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQ 424 (611)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~ 424 (611)
..
T Consensus 304 ~~------------------------------------------------------------------------------ 305 (425)
T 2qgh_A 304 KR------------------------------------------------------------------------------ 305 (425)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CE------------------------------------------------------------------------------
T ss_conf 25------------------------------------------------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 60467888888755653303244223101000663120135467888651048733643746630146777655677888
Q T0547 425 NPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDV 504 (611)
Q Consensus 425 ~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~ 504 (611)
++++|-+++..++..| .+..+|+.+...-+.++.....+++-||||...+... .+|+++..
T Consensus 306 --------------~~ivD~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~GptC~~~D~l~~~----~~LP~l~~ 366 (425)
T 2qgh_A 306 --------------FVIVDAGMNDFLRPSL-YHAKHAIRVITPSKGREISPCDVVGPVCESSDTFLKD----AHLPELEP 366 (425)
T ss_dssp --------------EEEESCCTTTCCHHHH-HCCCCCEEECSCC---CCEEEEEECSSSSTTCEEEEE----EEECCCCT
T ss_pred --------------EEEECCCHHCCCCHHH-CCCCCCEEECCCCCCCCCEEEEEECCCCCCCCEECCC----CCCCCCCC
T ss_conf --------------9998774102467455-0565422651356788840799990487777888636----64789999
Q ss_pred CCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf 7896078886020699974775156789857999988996288751378878999987
Q T0547 505 EKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 562 (611)
Q Consensus 505 ~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~ 562 (611)
| + +|.|..+|||.-.++...|-|..+.+|-| +++..++ +.+.+|.+|++..
T Consensus 367 -G-D-~l~f~~~GAYt~~~~s~FN~~p~p~~v~~--~~g~~~~--ir~ret~ed~~~~ 417 (425)
T 2qgh_A 367 -G-D-KIAIEKVGAYGSSMASQYNSRPKLLELAL--EDHKIRV--IRKREALEDLWRL 417 (425)
T ss_dssp -T-C-EEEECSCSSSSGGGCCCTTTCCCCEEEEE--CC-CEEE--EECCCCGGGGTGG
T ss_pred -C-C-EEEECCCCCCHHHHCCCCCCCCCCEEEEE--ECCEEEE--EECCCCHHHHHHH
T ss_conf -9-9-99994975112645375548999839999--8997999--9768999999970
No 6
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=0 Score=436.94 Aligned_cols=397 Identities=20% Similarity=0.244 Sum_probs=313.8
Q ss_pred CCEEEECCCCCCCHHHHHHHH---HHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH
Q ss_conf 674687278888889999999---85579985898747999999999999999999970889872378745337878999
Q T0547 18 NGKVCINYEKKPAIIDIVKEL---RDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFV 94 (611)
Q Consensus 18 ~G~l~v~p~~~~~l~dlv~~l---~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv 94 (611)
++.+..+-..+.++.+++.+. ..++.|||+||++.+.|+.|+++++++|+. .+++||+|||+++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtP~yv~d~~~i~~~~~~~~~~lp~----------~~~~YAvKaN~~~~vl 77 (425)
T 1f3t_A 8 NDDLSCRFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPR----------VTPFYAVKCNDDWRVL 77 (425)
T ss_dssp ------CBCCCSSHHHHHHHHCC------CCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGGGCCCHHHH
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEECCCCCHHHH
T ss_conf 786655653586388899864300347899837995899999999999986899----------8888885248989999
Q ss_pred HHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 999984666785166228899999996489988178788-9899999999854235710489866889999999999984
Q T0547 95 KNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKER 173 (611)
Q Consensus 95 ~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~ 173 (611)
+.+.+.| +|+||+|.+|+.+|+++|+++.+|+++| +|++++|+.|+. .|.+ .+++||++||++|.+.+
T Consensus 78 ~~l~~~G----~g~dvaS~~El~~al~aG~~~~~Ii~~gp~Ks~~el~~A~~---~gv~-~i~~Ds~~eL~~i~~~~--- 146 (425)
T 1f3t_A 78 GTLAALG----TGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARD---SGVD-VMTFDCVDELEKVAKTH--- 146 (425)
T ss_dssp HHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHC---
T ss_pred HHHHHHC----CEEEECCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHHC---
T ss_conf 9999839----95996299999999986989042999479899999999998---7999-99967889999999867---
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 69862268888507887764220466656478898999999999986689873478886338876788999999999999
Q T0547 174 FKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGN 253 (611)
Q Consensus 174 l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ 253 (611)
.+.++.+|+++.... .+++..||||++.+++.++++.+++.+. .+.|+|||+|||+.+...|..+++.+..
T Consensus 147 --~~~~v~~Ri~~~~~~-----~~~~~~sKFGi~~~~~~~~l~~~~~~~l--~l~GlH~H~GS~~~~~~~~~~~i~~~~~ 217 (425)
T 1f3t_A 147 --PKAKMVLRISTDDSL-----ARCRLSVKFGAKVEDCRFILEQAKKLNI--DVTGVSFHVGSGSTDASTFAQAISDSRF 217 (425)
T ss_dssp --TTCEEEEEBCC---------------CCSCBCHHHHHHHHHHHHHTTC--EEEEEECCCCSCCSCTHHHHHHHHHHHH
T ss_pred --CCCCEEEEEECCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --899727996146766-----7687888889879999999999986698--3899863267677797999999999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEE
Q ss_conf 99999971799405872455655477777777777888899999999999999996489987788707567775041145
Q T0547 254 IYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLI 333 (611)
Q Consensus 254 ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv 333 (611)
++..+++.|. .+++||+|||||++|+. .+++++|+..|...+++.+.. ...|+|++||||++||.+++|+
T Consensus 218 l~~~~~~~g~-~l~~idiGGG~~~~~~~-------~~~~~~~~~~i~~~l~~~~~~--~~~~~l~~EPGR~lva~ag~lv 287 (425)
T 1f3t_A 218 VFDMGTELGF-NMHILDIGGGFPGTRDA-------PLKFEEIAGVINNALEKHFPP--DLKLTIVAEPGRYYVASAFTLA 287 (425)
T ss_dssp HHHHHHHTTC-CCCEEECCCCCCSSTTS-------SSCHHHHHHHHHHHHHHHSCC--CTTCEEEECCSHHHHGGGEEEE
T ss_pred HHHHHHHHCC-CCCEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCC--CCCCEEEEECCCCEEECEEEEE
T ss_conf 9999998199-74068645776777889-------999999999999999986154--6796899904641562338999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 52210223566665455654451789999999973074346889999999999999997369667899989999999999
Q T0547 334 APVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLIT 413 (611)
Q Consensus 334 ~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~ 413 (611)
++|+++|........... + .
T Consensus 288 t~V~~~K~~~g~~~~i~~--~-------~--------------------------------------------------- 307 (425)
T 1f3t_A 288 VNVIAKKVTPGVQTDVGA--H-------A--------------------------------------------------- 307 (425)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred EEEEEEEECCCCEEEEEC--C-------C---------------------------------------------------
T ss_conf 999999953881577512--4-------4---------------------------------------------------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99998512345604678888887556533032442231010006631201354-67888651048733643746630146
Q T0547 414 KKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLD-RLDEEPTRSASIWDITCDSDGEISYS 492 (611)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~-rl~e~P~~~~~l~DiTCDSDG~i~~~ 492 (611)
....-.-.|++|-+++.++...|-=.+.+..+|.. .....+....++++-||+|...+-.
T Consensus 308 ------------------~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~~C~~~D~l~~- 368 (425)
T 1f3t_A 308 ------------------ESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVE- 368 (425)
T ss_dssp ----------------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCTTCCEEEEEEECSSSCTTCEEEE-
T ss_pred ------------------CCCCCCEEEEECCHHCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE-
T ss_conf ------------------4576532899670103656777731343001356688888877789999518888749947-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 77765567788878960788860206999747751567898579999
Q T0547 493 KDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 539 (611)
Q Consensus 493 ~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~ 539 (611)
+ .+|+++. .|. +|.|+.+|||...++...|.|..+.+|.|.
T Consensus 369 -~--~~LP~l~-~GD--~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~ 409 (425)
T 1f3t_A 369 -R--YYLPEMQ-VGE--WLLFEDMGAYTVVGTSSFNGFQSPTIYYVV 409 (425)
T ss_dssp -E--EEEECCC-TTC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEC
T ss_pred -C--CCCCCCC-CCC--EEEECCCCHHHHHHCCCCCCCCCCEEEEEE
T ss_conf -7--6988999-999--998728561037664766699998199999
No 7
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=0 Score=437.08 Aligned_cols=401 Identities=19% Similarity=0.214 Sum_probs=312.5
Q ss_pred CCCCEEECCEEEECC-CCCCCHHHHHHHHHHC---CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 887433067468727-8888889999999855---799858987479999999999999999999708898723787453
Q T0547 11 NENFIIKNGKVCINY-EKKPAIIDIVKELRDD---GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLK 86 (611)
Q Consensus 11 ~~yF~i~~G~l~v~p-~~~~~l~dlv~~l~~~---~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK 86 (611)
+||++- ++-++.. .+++++.+|++....+ .-++|+||++.+.|++|+++++++|++ .+++||+|
T Consensus 2 ~~~~~~--~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~pfyv~dl~~i~~~~~~~~~~lp~----------v~~~YAvK 69 (448)
T 3btn_A 2 KGFIDD--ANYSVGLLDEGTNLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQ----------IKPFYTVK 69 (448)
T ss_dssp --------CCEEEEEECTTCCHHHHHHHHHHHHHHSSCCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGG
T ss_pred CCCCCC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEEC
T ss_conf 741026--552167750897699999998763146789977992699999999999987899----------86887731
Q ss_pred ECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 37878999999984666785166228899999996489988178788-98999999998542357104898668899999
Q T0547 87 VNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEA 165 (611)
Q Consensus 87 aN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~ 165 (611)
||+++.|++.+.+.| +|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+. .|.+ ++++||++||++
T Consensus 70 aN~~~~vl~~l~~~G----~G~DvaS~~El~~al~~G~~~~~Iif~gp~Ks~~~i~~A~~---~Gv~-~~~vDs~~EL~~ 141 (448)
T 3btn_A 70 CNSTPAVLEILAALG----TGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAK---VGVN-IMTCDNEIELKK 141 (448)
T ss_dssp GCCCHHHHHHHHHHT----CEEEESSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHH
T ss_pred CCCCHHHHHHHHHCC----CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHH
T ss_conf 189899999999839----94999699999999976979574999999999999999998---7994-999899999999
Q ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 99999984698622688885078877642204666564788989999999999866898734788863388767889999
Q T0547 166 IIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLK 245 (611)
Q Consensus 166 I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~ 245 (611)
|.+. ..++++.+||++....+ +++..||||++.+++.++++.+++.+. .+.|+|||+|||+.+.+.|.
T Consensus 142 i~~~-----~~~~~v~lRI~~~~~~~-----~~~~~sKFGi~~~~~~~~l~~~~~~~l--~l~GlH~HvGS~~~~~~~~~ 209 (448)
T 3btn_A 142 IARN-----HPNAKVLLHIATEDNIG-----GEDGNMKFGTTLKNCRHLLECAKELDV--QIIGVKFHVSSACKEYQVYV 209 (448)
T ss_dssp HHHH-----CTTCEEEEEBCCCC-------------CCCCBCHHHHHHHHHHHHHHTC--EEEEEECCCCTTCCCTTHHH
T ss_pred HHHH-----CCCCCEEEEECCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHH
T ss_conf 9976-----89996389861466677-----776777678899999999999976798--78674320476757779999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
Q ss_conf 99999999999999717994058724556554777777777778888999999999999999964899877887075677
Q T0547 246 KALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFV 325 (611)
Q Consensus 246 ~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRai 325 (611)
.+++++..++..+++.|. .+++||||||||++|. ..++|+..+...+...+.. -+.++|++|||||+
T Consensus 210 ~ai~~~~~~~~~~~~~g~-~l~~iDiGGGf~~~~~----------~~e~~~~~i~~~l~~~~~~--~~~~~li~EPGR~l 276 (448)
T 3btn_A 210 HALSDARCVFDMAGEFGF-TMNMLDIGGGFTGTEI----------QLEEVNHVISPLLDIYFPE--GSGIQIISEPGSYY 276 (448)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCCEEECCSCCCSCHH----------HHHHHHHHHHHHHHHHSCT--TSCCEEEECCSHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----------CHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCEE
T ss_conf 999999999999997599-5305523786787888----------7677899999999864122--68975996598604
Q ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 75041145522102235666654556544517899999999730743468899999999999999973696678999899
Q T0547 326 AANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNA 405 (611)
Q Consensus 326 vA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~ 405 (611)
||.+++|+++|+++|.............+ .
T Consensus 277 va~ag~lvt~V~~~K~~~~~~~~~~v~~~-------g------------------------------------------- 306 (448)
T 3btn_A 277 VSSAFTLAVNIIAKKVVENDKFSSGVEKN-------G------------------------------------------- 306 (448)
T ss_dssp HTTTEEEEEEEEEEEEC---------------------------------------------------------------
T ss_pred EECEEEEEEEEEEEEECCCCCEEEEEECC-------C-------------------------------------------
T ss_conf 20208999999999972686146665036-------7-------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC-CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99999999999985123456046788888875565330324422310100066312-01354678886510487336437
Q T0547 406 EILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFP-IMPLDRLDEEPTRSASIWDITCD 484 (611)
Q Consensus 406 E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fp-i~Pl~rl~e~P~~~~~l~DiTCD 484 (611)
.....-.|+.|-+++.|+++.|--++.+. .+.-.+-..+|....++++-|||
T Consensus 307 ---------------------------~~~~~~~~~i~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~ 359 (448)
T 3btn_A 307 ---------------------------SDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCD 359 (448)
T ss_dssp -------------------------------CEEEEESCCTTTTTGGGGC----CCCEECCC-----CEEEEEEECTTCS
T ss_pred ---------------------------CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf ---------------------------66611024642123304788876413556554556667887578999952878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 46630146777655677888789607888602069997477515678985799998
Q T0547 485 SDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI 540 (611)
Q Consensus 485 SDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~ 540 (611)
|...+-. + .+|+++. .|. +|.|+.+|||.-.|....|-|..+.+|-|.-
T Consensus 360 s~D~l~~--~--~~LP~l~-~GD--~L~~~~~GAY~~s~ss~fNg~~~Pa~v~v~~ 408 (448)
T 3btn_A 360 ELDQIVE--S--CLLPELN-VGD--WLIFDNMGADSFHEPSAFNDFQRPAIYFMMS 408 (448)
T ss_dssp TTCEEEE--E--EEEECCC-TTC--EEEESSCCSSCCCCCCGGGTTCCCEEEEEEE
T ss_pred CCCEEEE--C--CCCCCCC-CCC--EEEECCCCCCCCHHCCCCCCCCCCEEEEEEE
T ss_conf 8778917--9--6998999-999--9988597703132318988999870899990
No 8
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=0 Score=420.43 Aligned_cols=395 Identities=19% Similarity=0.218 Sum_probs=306.0
Q ss_pred CCEEEECCCCCCCHHHHHHHH----HHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 674687278888889999999----8557998589874799999999999999999997088987237874533787899
Q T0547 18 NGKVCINYEKKPAIIDIVKEL----RDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF 93 (611)
Q Consensus 18 ~G~l~v~p~~~~~l~dlv~~l----~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~V 93 (611)
+.|+.. .+.+..|++++. ......||+||++.+.|++|++++.++|+ ..+++||+|||+++.|
T Consensus 10 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~pfyv~d~~~i~~~~~~~~~~lp----------~v~~~YAvKaN~~~~i 76 (424)
T 7odc_A 10 DCHILD---EGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP----------RVTPFYAVKCNDSRAI 76 (424)
T ss_dssp EEEEEC---SSCCHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHH
T ss_pred EEEEEC---CCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHH
T ss_conf 278832---886399999999886424789986899479999999999998689----------9868888513898999
Q ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 9999984666785166228899999996489988178788-989999999985423571048986688999999999998
Q T0547 94 VKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE 172 (611)
Q Consensus 94 v~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~ 172 (611)
++.+.+.| +|+||+|.+||.+|+++|+++++|+|+| +|++++|+.|+. .|.+ .+++||+.||+++.+.
T Consensus 77 l~~l~~~G----~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~i~~A~~---~gv~-~i~~ds~~EL~~i~~~--- 145 (424)
T 7odc_A 77 VSTLAAIG----TGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAAS---NGVQ-MMTFDSEIELMKVARA--- 145 (424)
T ss_dssp HHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHH---
T ss_pred HHHHHHCC----CCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHH---
T ss_conf 99999849----97899789999999974959363999899999999999998---5996-7996799999999976---
Q ss_pred HCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 46986226888850788776422046665647889899999999998668987347888633887678899999999999
Q T0547 173 RFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAG 252 (611)
Q Consensus 173 ~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~ 252 (611)
....++++|+++... ..+++..+|||++.+++.++++.++..+. .+.|+|||+|||+.++..|..+++++.
T Consensus 146 --~~~~~v~~Ri~~~~~-----~~~~~~~skFG~~~~~~~~~~~~~~~~~l--~l~Glh~HvGS~~~~~~~~~~~~~~~~ 216 (424)
T 7odc_A 146 --HPKAKLVLRIATDDS-----KAVCRLSVKFGATLKTSRLLLERAKELNI--DVIGVSFHVGSGCTDPDTFVQAVSDAR 216 (424)
T ss_dssp --CTTCEEEEEBCC----------------CCCBCHHHHHHHHHHHHHTTC--EEEEEECCCCSSCCCTHHHHHHHHHHH
T ss_pred --CCCCCCCEEEECCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf --555776335405864-----34456667888568999999999875698--588999985887762577898888899
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEE
Q ss_conf 99999997179940587245565547777777777788889999999999999999648998778870756777504114
Q T0547 253 NIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVL 332 (611)
Q Consensus 253 ~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vL 332 (611)
.++..+++.|. .+++||+|||||++|+.. .+.++|+..+...+...+... +.++|++||||++||.+++|
T Consensus 217 ~~~~~~~~~g~-~~~~idiGGGf~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~--~~~~li~EPGR~lva~ag~l 286 (424)
T 7odc_A 217 CVFDMATEVGF-SMHLLDIGGGFPGSEDTK-------LKFEEITSVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTL 286 (424)
T ss_dssp HHHHHHHHHTC-CCCEEECCCCCCCSSSSS-------SCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEE
T ss_pred HHHHHHHHHCC-CCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHCCC--CCCEEEECCCHHHHHHCEEE
T ss_conf 99999875247-763576078756676677-------898997555434466530247--89669963864502324289
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 55221022356666545565445178999999997307434688999999999999999736966789998999999999
Q T0547 333 IAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLI 412 (611)
Q Consensus 333 v~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i 412 (611)
+++|++++.......... +. .
T Consensus 287 vt~V~~~K~~~~~~~~~~---~~-------~------------------------------------------------- 307 (424)
T 7odc_A 287 AVNIIAKKTVWKEQPGSD---DE-------D------------------------------------------------- 307 (424)
T ss_dssp EEEEEEEEEEC---------------------------------------------------------------------
T ss_pred EEEEEEEEEECCCCCCCC---CC-------C-------------------------------------------------
T ss_conf 999999998424223434---54-------3-------------------------------------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 9999985123456046788888875565330324422310100066-312013546788865104873364374663014
Q T0547 413 TKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQ-NFPIMPLDRLDEEPTRSASIWDITCDSDGEISY 491 (611)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q-~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~ 491 (611)
. . ..-.-.|++|-+++.++..+|--.. ..++++-.+-.+.+.....+++-||||-..+-.
T Consensus 308 ------~--~-----------~~~~~~~~vd~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~ 368 (424)
T 7odc_A 308 ------E--S-----------NEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVE 368 (424)
T ss_dssp ----------------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE
T ss_pred ------C--C-----------CCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEECC
T ss_conf ------4--5-----------66258999875546677777740365046544688887877789999728688768864
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 6777655677888789607888602069997477515678985799998
Q T0547 492 SKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI 540 (611)
Q Consensus 492 ~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~ 540 (611)
+.. |+++.. |+ +|.|+.+|||.-.|...+|-|..+.+|.|.-
T Consensus 369 --~~~--Lp~l~~-GD--~l~~~~~GAY~~~~ss~fN~~~~P~~v~v~~ 410 (424)
T 7odc_A 369 --RCN--LPEMHV-GD--WMLFENMGAYTVAAASTFNGFQRPNIYYVMS 410 (424)
T ss_dssp --EEE--EECCCT-TC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEEE
T ss_pred --CCC--CCCCCC-CC--EEEECCCCCCHHHHCCCCCCCCCCCEEEEEE
T ss_conf --547--789999-99--9999398851265536567999985899997
No 9
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=0 Score=420.34 Aligned_cols=387 Identities=20% Similarity=0.227 Sum_probs=301.1
Q ss_pred CCCHHHH----HHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCC
Q ss_conf 8888999----999985579985898747999999999999999999970889872378745337878999999984666
Q T0547 28 KPAIIDI----VKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKD 103 (611)
Q Consensus 28 ~~~l~dl----v~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~ 103 (611)
.....|+ +.++..+...+|+||++.+.|++|++++.++|+. .+++||+|||+++.|++.+.+.|
T Consensus 27 ~~~~~d~~~~~i~~~~~~~~~~pfyv~D~~~i~~~~~~~~~~lp~----------v~~~YAvKaN~~~~vl~~l~~~G-- 94 (471)
T 2oo0_A 27 GFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPR----------VTPFYAVKCNDSKAIVKTLAATG-- 94 (471)
T ss_dssp TCCHHHHHHHHHHHTTTSSCCCCEEEEEHHHHHHHHHHHHHHCTT----------EEEEEEGGGCCCHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC----------CEEEEEEEECCCHHHHHHHHHCC--
T ss_conf 420999999999975046799887996899999999999986899----------86887741089899999999849--
Q ss_pred CCCEEEECCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 785166228899999996489988178788-9899999999854235710489866889999999999984698622688
Q T0547 104 YNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGL 182 (611)
Q Consensus 104 ~~~GlEv~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~Igi 182 (611)
.|+||+|++||.+|+++|+++++|+|+| +|++++|+.|+. .|.+ +|++||++||++|.+.+ ...++++
T Consensus 95 --~G~DvaS~gEl~~al~~G~~~~~Iif~gp~K~~~ei~~A~~---~gv~-~i~~dS~~EL~~i~~~~-----~~~~v~l 163 (471)
T 2oo0_A 95 --TGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN---NGVQ-MMTFDSEVELMKVARAH-----PKAKLVL 163 (471)
T ss_dssp --CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHC-----TTCEEEE
T ss_pred --CEEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHHH-----CCCCCCC
T ss_conf --93998399999999976989452999799899999999998---5996-99967999999999750-----1476334
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88507887764220466656478898999999999986689873478886338876788999999999999999999717
Q T0547 183 RVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 262 (611)
Q Consensus 183 Rv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g 262 (611)
|++++.. ..+++..+|||++.+++..+++.++..+. .+.|||||+|||+.+.+.|.++++.+..++..+++.|
T Consensus 164 Ri~~~~~-----~~~~~~~~KFG~~~~~~~~~~~~~~~~~l--~l~GlH~HiGSq~~d~~~~~~~i~~~~~~~~~~~~~g 236 (471)
T 2oo0_A 164 RIATDDS-----KAVCRLSVKFGATLRTSRLLLERAKELNI--DVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVG 236 (471)
T ss_dssp EECCCCT-----TSSBCCTTTSCBCHHHHHHHHHHHHHTTC--EEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3567865-----54211467744248999999998875596--0899999828865630789999998888999998609
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCC
Q ss_conf 99405872455655477777777777888899999999999999996489987788707567775041145522102235
Q T0547 263 AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 342 (611)
Q Consensus 263 ~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~ 342 (611)
. .+++||+|||||++|+.. .++++|+..+...+...+... +.++|++|||||+||++++||++|+++|..
T Consensus 237 ~-~~~~ldiGGGf~~~~~~~-------~~~e~~~~~~~~~~~~~~~~~--~~~~li~EPGR~lva~ag~lvt~V~~~K~~ 306 (471)
T 2oo0_A 237 F-SMYLLDIGGGFPGSEDVK-------LKFEEITGVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTLAVNIIAKKIV 306 (471)
T ss_dssp C-CCCEEECCCCCCSSSSSS-------SCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEEEEEEEEEEEE
T ss_pred C-CCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCEEEEEEEEEEEEEEEEEEE
T ss_conf 7-632102467756666677-------788899999988776521357--884699744707864107999999999973
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66665455654451789999999973074346889999999999999997369667899989999999999999985123
Q T0547 343 EYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGD 422 (611)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~ 422 (611)
....... .+ .. ....
T Consensus 307 ~~~~~g~---~~-------~~-------------------------------------------------------~~~~ 321 (471)
T 2oo0_A 307 LKEQTGS---DD-------ED-------------------------------------------------------ESSE 321 (471)
T ss_dssp C------------------------------------------------------------------------------C
T ss_pred CCCCCCC---CC-------CC-------------------------------------------------------CCCC
T ss_conf 1311344---44-------44-------------------------------------------------------4667
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4560467888888755653303244223101000-663120135467888651048733643746630146777655677
Q T0547 423 KQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGL-EQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHD 501 (611)
Q Consensus 423 ~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai-~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~ 501 (611)
....|++|-+++.++..+|-- ....|+++-......+.....+++-||||...+-. ..+|++
T Consensus 322 -------------~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~----~~~LP~ 384 (471)
T 2oo0_A 322 -------------QTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVE----RCDLPE 384 (471)
T ss_dssp -------------CEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEEC
T ss_pred -------------CEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEE----CEECCC
T ss_conf -------------448999887666534567652265235543787877877689999227688878944----407789
Q ss_pred CCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 88878960788860206999747751567898579999
Q T0547 502 VDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 539 (611)
Q Consensus 502 ~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~ 539 (611)
+.. |. +|.|..+|||.-.|...+|.|..+.+|-|.
T Consensus 385 l~~-GD--~l~i~~~GAY~~s~ss~fN~~~~P~~v~v~ 419 (471)
T 2oo0_A 385 MHV-GD--WMLFENMGAYTVAAASTFNGFQRPTIYYVM 419 (471)
T ss_dssp CCT-TC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEE
T ss_pred CCC-CC--EEEEECCCCCHHHHCCCCCCCCCCEEEEEE
T ss_conf 998-99--999938876337655777799998089998
No 10
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00 E-value=0 Score=417.08 Aligned_cols=363 Identities=19% Similarity=0.313 Sum_probs=292.3
Q ss_pred HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCH
Q ss_conf 99999855799858987479999999999999999999708898723787453378789999999846667851662288
Q T0547 34 IVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSK 113 (611)
Q Consensus 34 lv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk 113 (611)
+.+.+.++ ||||+||++++.|++|+++++++|+ +.+++||+|||+++.|++.+.+.| +|+||+|+
T Consensus 45 l~~~~v~~-~GTP~yV~d~~~l~~n~~~~~~~~~----------~~~i~YAvKAN~~~~il~~l~~~G----~g~dv~S~ 109 (419)
T 2plj_A 45 LIEASVEQ-FGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG----ASFDLATT 109 (419)
T ss_dssp HHHHHHHH-HCSSEEEEEHHHHHHHHHHHHHHST----------TEEEEEESTTCCCHHHHHHHHHHT----CEEEECSH
T ss_pred HHHHHHHH-CCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEEECCCCHHHHHHHHHCC----CCEEEECH
T ss_conf 89999872-1998899899999999999998689----------988999963288899999999839----98899899
Q ss_pred HHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 99999996489988178788-98999999998542357104898668899999999999846986226888850788776
Q T0547 114 AELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVG 192 (611)
Q Consensus 114 ~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g 192 (611)
+||.+|+++|+++++|+|+| +|++++|+.|+. .|.+ .+++||++||+++.++++. .+ +.+|+.+. ...
T Consensus 110 ~El~~al~aG~~~~~Ii~~gp~Ks~~el~~al~---~gv~-~i~vDs~~El~~l~~~a~~-~~----~~iri~~r--~~~ 178 (419)
T 2plj_A 110 GEVELVASEGVPADLTIHTHPIKRDADIRDALA---YGCN-VFVVDNLNELEKFKAYRDD-VE----LLVRLSFR--NSE 178 (419)
T ss_dssp HHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHTTGGGTTT-CE----EEEEBCC------
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCC-EEECCCHHHHHHHHHHCCC-CE----EEEEEEEC--CCC
T ss_conf 999999975969021898999888476999997---3984-6740328899999975522-50----58877522--563
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 42204666564788989999999999866898734788863388767889999999999999999997179940587245
Q T0547 193 IWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 272 (611)
Q Consensus 193 ~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG 272 (611)
.+++..+|||++.+++.++++.++..+. .+.|+|||+|||+.+.+.+..+++++.+++.++.+..++.+++||+|
T Consensus 179 ---~~~~~~~kfG~~~~~~~~~~~~~~~~~l--~~~Gih~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~idiG 253 (419)
T 2plj_A 179 ---AFADLSKKFGCSPEQALVIIETAKEWNI--RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIG 253 (419)
T ss_dssp --------CCCSCBCHHHHHHHHHHHHHTTC--EEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECC
T ss_pred ---CCCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf ---3343468877798999999999986799--76788886575657751057799999999987666317775356406
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 56554777777777778888999999999999999964899877887075677750411455221022356666545565
Q T0547 273 GGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILK 352 (611)
Q Consensus 273 GGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~ 352 (611)
||||++|+.... .++.|+..+...+ ....+.|+|++||||++||++++|+++|++++......
T Consensus 254 GG~~~~y~~~~~------~~~~~~~~~~~~~-----~~~~~~~~li~EPGR~lva~ag~ll~~V~~~k~~~~~~------ 316 (419)
T 2plj_A 254 GGFPVNYTQQVM------PIDQFCAPINEAL-----SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQI------ 316 (419)
T ss_dssp CCCCCCSSSCCC------CHHHHHHHHHHHH-----TTSCTTCEEEECCCHHHHGGGEEEEEEEEEEEEETTEE------
T ss_pred CCCCCCCCCCCC------CHHHHHHHHHHHH-----HHCCCCCEEECCCCCEEEECCEEEEEEEEEEEECCCCE------
T ss_conf 976745765667------7567777888876-----63036600005876115405168999999998516725------
Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 44517899999999730743468899999999999999973696678999899999999999999851234560467888
Q T0547 353 KQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAI 432 (611)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l 432 (611)
T Consensus 317 -------------------------------------------------------------------------------- 316 (419)
T 2plj_A 317 -------------------------------------------------------------------------------- 316 (419)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 88875565330324422310100066312013546788865104873364374663014677765567788878960788
Q T0547 433 QDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLG 512 (611)
Q Consensus 433 ~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG 512 (611)
++++|-+++.++++.|--++.+|+.+..+=. +.....+++-||+|...+ ... .+|++++ .|. +|.
T Consensus 317 ------~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~G~~C~~~D~l---~~~-~~lp~l~-~GD--~L~ 381 (419)
T 2plj_A 317 ------WYYLDDGIYGSFSGLMFDDARYPLTTIKQGG--ELIPSVLSGPTCDSVDVI---AEN-ILLPKLN-NGD--LVI 381 (419)
T ss_dssp ------EEEESCCTTTGGGHHHHSCCCCCEEESCCSS--CEEEEEEECSSSCTTCEE---EEE-EEEECCC-TTC--EEE
T ss_pred ------EEEEECCCCCCCCHHHCCCCCCCEECCCCCC--CCCEEEEECCCCCCCCEE---CCC-CCCCCCC-CCC--EEE
T ss_conf ------8997024123567234136646446457888--755599881797863588---845-3888999-999--999
Q ss_pred EEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 860206999747751567898579999
Q T0547 513 FFLVGAYQEVLGMKHNLFTHPTEAIIS 539 (611)
Q Consensus 513 ~FlvGAYQeiLGd~HNLfg~t~~v~v~ 539 (611)
|+.+|||.-.|...-|-|..+.+|-|+
T Consensus 382 i~~~GAY~~~~as~fN~~~~p~~V~v~ 408 (419)
T 2plj_A 382 GRTMGAYTSATATDFNFFKRAQTIALN 408 (419)
T ss_dssp ESSCSSSSGGGCBCGGGCCCCEEEEEC
T ss_pred ECCCCHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 889773357662868899988089996
No 11
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=0 Score=399.05 Aligned_cols=391 Identities=20% Similarity=0.239 Sum_probs=293.4
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCE
Q ss_conf 88889999999855799858987479999999999999999999708898723787453378789999999846667851
Q T0547 28 KPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYG 107 (611)
Q Consensus 28 ~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~G 107 (611)
..+|.+|+++ ||||+||++++.|++++++++++ .+++||+|||+++.|++.+.+.| +|
T Consensus 14 ~~~l~~l~~~-----yGTP~yv~d~~~i~~~~~~l~~~-------------~~i~YAvKaN~~~~vl~~l~~~G----~g 71 (425)
T 1knw_A 14 AENLLRLPAE-----FGCPVWVYDAQIIRRQIAALKQF-------------DVVRFAQKACSNIHILRLMREQG----VK 71 (425)
T ss_dssp HHHHHHHHHH-----HCSSEEEEEHHHHHHHHHTTTTS-------------SEEEEEGGGCCCHHHHHHHHHTT----CE
T ss_pred HHHHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHCC-------------CEEEEEEECCCCHHHHHHHHHCC----CC
T ss_conf 9999999997-----79998998799999999985266-------------98999961078999999999839----98
Q ss_pred EEECCHHHHHHHHHCCCCC----CCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6622889999999648998----8178788-9899999999854235710489866889999999999984698622688
Q T0547 108 LEAGSKAELLLAMAYNNEG----APITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGL 182 (611)
Q Consensus 108 lEv~Sk~EL~~ala~g~~~----~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~Igi 182 (611)
+||+|++||.+|+++|+++ .+|+|+| +|+.++|+.|+. .|. .+++||.+||+++.++++ ..++++
T Consensus 72 ~DvaS~~El~~al~~G~~~~~~~~~Ii~~~p~k~~~~i~~a~~---~g~--~i~~ds~~el~~l~~~~~-----~~~i~l 141 (425)
T 1knw_A 72 VDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSE---LQI--PVNAGSVDMLDQLGQVSP-----GHRVWL 141 (425)
T ss_dssp EEECSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHH---HTC--CEEESSHHHHHHHHHHST-----TCEEEE
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHH---HCC--HHHHHHHHHHHHHHHHCC-----CCCEEE
T ss_conf 8998999999999869996677330797477546999986664---152--010014789999975356-----674421
Q ss_pred EEEECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88507887764-22046665647889899999999998668987347888633887678899999999999999999971
Q T0547 183 RVRLHSAGVGI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM 261 (611)
Q Consensus 183 Rv~l~~~~~g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~ 261 (611)
|+++......+ ...+++..+|||++.+++..+...++..+. ++.|+|||+|||+.+...++.+ ..++....+.
T Consensus 142 Ri~~~~~~~~~~~~~~~~~~~kfg~~~~~~~~~~~~~~~~~l--~~~GlhfHvgS~~~~~~~~~~~----~~~~~~~~~~ 215 (425)
T 1knw_A 142 RVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHL--QLVGIHMHIGSGVDYAHLEQVC----GAMVRQVIEF 215 (425)
T ss_dssp EEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHHTTC--EEEEEECCCCCTTCHHHHHHHH----HHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEEEECCCCCCHHHHHHHH----HHHHHHHHHC
T ss_conf 137886644211235677765453240344678888875691--7988888427753267899999----9887765404
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCC
Q ss_conf 79940587245565547777777777788889999999999999999648998778870756777504114552210223
Q T0547 262 GAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFS 341 (611)
Q Consensus 262 g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~ 341 (611)
|. .++++|+|||||++|.....+. ..+.++..+....+......+ ..|+|++||||++||.+++||++|++++.
T Consensus 216 g~-~l~~ldiGGG~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~li~EPGR~lva~ag~lvt~V~~~k~ 289 (425)
T 1knw_A 216 GQ-DLQAISAGGGLSVPYQQGEEAV----DTEHYYGLWNAAREQIARHLG-HPVKLEIEPGRFLVAQSGVLITQVRSVKQ 289 (425)
T ss_dssp TC-CCSEEECCCCCCCCCSTTCCCC----CHHHHHHHHHHHHHHHHHHHT-SCCEEEECCSHHHHGGGEEEEEEEEEEEE
T ss_pred CC-EEEEEECCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHCCEEEEEEEEEEEE
T ss_conf 81-4666521577465778777788----989998888888887664136-52499843742201144379999989970
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56666545565445178999999997307434688999999999999999736966789998999999999999998512
Q T0547 342 QEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLG 421 (611)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~ 421 (611)
.....
T Consensus 290 ~~~~~--------------------------------------------------------------------------- 294 (425)
T 1knw_A 290 MGSRH--------------------------------------------------------------------------- 294 (425)
T ss_dssp ETTEE---------------------------------------------------------------------------
T ss_pred CCCEE---------------------------------------------------------------------------
T ss_conf 69746---------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC----CCCCCCEEEEECCCCCCCCCCCCCCC---
Q ss_conf 34560467888888755653303244223101000663120135467----88865104873364374663014677---
Q T0547 422 DKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRL----DEEPTRSASIWDITCDSDGEISYSKD--- 494 (611)
Q Consensus 422 ~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl----~e~P~~~~~l~DiTCDSDG~i~~~~~--- 494 (611)
.++++-+... +...+..+..+|+.++.+. +..|+...++++-||||...+.....
T Consensus 295 -----------------~~~~d~g~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~GptC~s~D~l~~~~~~~~ 356 (425)
T 1knw_A 295 -----------------FVLVDAGFND-LMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNV 356 (425)
T ss_dssp -----------------EEEESCCTTT-SCHHHHHCCCCCEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCB
T ss_pred -----------------EEEECCCCCC-CCCHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCC
T ss_conf -----------------8997751256-6675663764412564157654446895389999268778707863566653
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf 76556778887896078886020699974775156789857999988996288751378878999987
Q T0547 495 KPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 562 (611)
Q Consensus 495 ~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~ 562 (611)
...+|+++.. |. +|-|..+|||.-.++...|-|..+.+|-++ +| .++-+.+-+|++|++.-
T Consensus 357 ~~~~LP~l~~-GD--~l~f~~~GAYt~s~~s~FN~~p~p~~v~~~---~g-~~~~ir~ret~~d~~~~ 417 (425)
T 1knw_A 357 ETRALPEVKA-GD--YLVLHDTGAYGASMSSNYNSRPLLPEVLFD---NG-QARLIRRRQTIEELLAL 417 (425)
T ss_dssp CCEEEECCCT-TC--EEEEESCSSSSGGGCCCTTTCCCCCEEEEE---TT-EEEEEECCCCHHHHHTT
T ss_pred CCCCCCCCCC-CC--EEEECCCCHHHHHHCCCCCCCCCCCEEEEE---CC-EEEEEECCCCHHHHHHC
T ss_conf 3354788999-99--999959763148653776799988689999---99-89999788999999721
No 12
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=0 Score=396.38 Aligned_cols=366 Identities=19% Similarity=0.258 Sum_probs=289.3
Q ss_pred HHHHHHHH--CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999985--5799858987479999999999999999999708898723787453378789999999846667851662
Q T0547 33 DIVKELRD--DGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEA 110 (611)
Q Consensus 33 dlv~~l~~--~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv 110 (611)
++++.+.+ .+.+||+||++.+.|++++++++++|+ +.+++||+|||+++.|++.+.+.| +|+||
T Consensus 3 ~~~~~~~~~~~~~~~~fyv~d~~~i~~~~~~~~~~~p----------~v~~~YAvKAN~~~~il~~l~~~G----~g~dv 68 (372)
T 2nva_A 3 SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP----------RVTPHYAVKCNNDEVLLKTMCDKN----VNFDC 68 (372)
T ss_dssp HHHHHHHHHCTTCCSEEEEECHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHTT----CEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHHHHHHHHCC----CEEEE
T ss_conf 8999999748788986899709999999999998789----------986888852089899999999849----82999
Q ss_pred CCHHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 28899999996489988178788-98999999998542357104898668899999999999846986226888850788
Q T0547 111 GSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSA 189 (611)
Q Consensus 111 ~Sk~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~ 189 (611)
+|.+||.+|+++|+++++|+|+| +|++++|+.|+.. |.+ ++++||++||++|.+++ ...++.+|+++...
T Consensus 69 aS~~El~~al~~G~~~~~Ii~~gp~Ks~~el~~a~~~---gv~-i~~~ds~~el~~i~~~~-----~~~~~~~~~~~~~~ 139 (372)
T 2nva_A 69 ASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQ---GVD-IATFDSSFELDKIHTYH-----PNCKMILRIRCDDP 139 (372)
T ss_dssp CSHHHHHHHHHHTCCGGGEEECCSCCCHHHHHHHHHH---TCC-EEEECSHHHHHHHHHHC-----TTCEEEEEBCCCCT
T ss_pred ECHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHC---CCC-EEEECCHHHHHHHHHHC-----CCCCCCCCCCCCCC
T ss_conf 4999999999859994789982897999999999984---998-58976999999886533-----22222110024676
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 77642204666564788989999999999866898734788863388767889999999999999999997179940587
Q T0547 190 GVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAI 269 (611)
Q Consensus 190 ~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~L 269 (611)
.. +++..+|||++..++.++++.++..+. .+.|||||+|||+.+.+.|.++++.+.+++.++.+.+. .+++|
T Consensus 140 ~~-----~~~~~~kfg~~~~~~~~~~~~~~~~~l--~~~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 211 (372)
T 2nva_A 140 NA-----TVQLGNKFGANEDEIRHLLEYAKQLDI--EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH-KPYIL 211 (372)
T ss_dssp TC-----SBCCTTTSSBCGGGHHHHHHHHHHTTC--CEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTC-CCCEE
T ss_pred CC-----CCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEE
T ss_conf 44-----467888777664666899999986699--08999952586558858999999999999998875178-74287
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 24556554777777777778888999999999999999964899877887075677750411455221022356666545
Q T0547 270 NLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKL 349 (611)
Q Consensus 270 DIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~ 349 (611)
|+|||||++|+..+.+. ...++.+ ..++ +....+.|+|++||||++||++++|+++|++++......
T Consensus 212 diGGGf~~~y~~~~~~~----~~~~~~~---~~~~---~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~--- 278 (372)
T 2nva_A 212 DIGGGLHADIDEGELST----YMSDYIN---DAIK---DFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLY--- 278 (372)
T ss_dssp ECCSCBCCCCC---CCC----HHHHHHH---HHHH---HHCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEETTEE---
T ss_pred EECCCCCCCCCCCCCCC----CHHHHHH---HHHH---HCCCCCCCEEECCCCCEECCCEEEEEEEEEEEEECCCCE---
T ss_conf 75586465888776773----5999998---7654---113654543205740103126059999999999718822---
Q ss_pred CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 56544517899999999730743468899999999999999973696678999899999999999999851234560467
Q T0547 350 ILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADL 429 (611)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~ 429 (611)
T Consensus 279 -------------------------------------------------------------------------------- 278 (372)
T 2nva_A 279 -------------------------------------------------------------------------------- 278 (372)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8888887556533032442231010006631201354678-886510487336437466301467776556778887896
Q T0547 430 LAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLD-EEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN 508 (611)
Q Consensus 430 ~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~-e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~ 508 (611)
.|++|-+++-++.+.+--.+.++..++.+.. ..+.....+++-||+|-..+-. +..|| +++. |+
T Consensus 279 ---------~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~--~~~LP--~l~~-GD- 343 (372)
T 2nva_A 279 ---------EYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINH--NVALP--ELHI-GD- 343 (372)
T ss_dssp ---------EEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE--EEEEE--CCCT-TC-
T ss_pred ---------EEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCEECC--CCCCC--CCCC-CC-
T ss_conf ---------687333114655430111036640220467887877789999369781538887--64179--9999-99-
Q ss_pred EEEEEEECCHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 078886020699974775156789857999
Q T0547 509 YFLGFFLVGAYQEVLGMKHNLFTHPTEAII 538 (611)
Q Consensus 509 y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v 538 (611)
+|.|..+|||--.|...-|=|+.+.++.|
T Consensus 344 -~l~i~~~GAY~~s~ss~fNg~~~p~v~~~ 372 (372)
T 2nva_A 344 -WVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp -EEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred -EEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf -99884955223866188889899837969
No 13
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=376.72 Aligned_cols=380 Identities=21% Similarity=0.313 Sum_probs=296.1
Q ss_pred HHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999985579985898747999999999999999999970889872378745337878999999984666785166228
Q T0547 33 DIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGS 112 (611)
Q Consensus 33 dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~S 112 (611)
|++++|.++ +|||+||++.+.|++++++++++|+++ +.+++||+|||+.+.|++.+.+.| .|+||+|
T Consensus 2 ~~l~~l~~~-~gTP~~viD~~~l~~n~~~l~~~~~~~--------~~~~~yavKaN~~~~v~~~l~~~G----~g~~vaS 68 (386)
T 2yxx_A 2 DILRKVAEI-HGTPTYVYFEETLRKRSRLVKEVFEGV--------NLLPTFAVKANNNPVLLKILREEG----FGMDVVT 68 (386)
T ss_dssp CHHHHHHHH-HCSSEEEEEHHHHHHHHHHHHHHTTTS--------CEEEEEEGGGCCCHHHHHHHHHTT----CEEEECS
T ss_pred HHHHHHHHH-HCCCEEEEEHHHHHHHHHHHHHHCCCC--------CCEEEEEECCCCCHHHHHHHHHHC----CEEEEEC
T ss_conf 589999997-799889985999999999999746648--------977999976188599999999849----9599948
Q ss_pred HHHHHHHHHCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 899999996489988178788-9899999999854235710489866889999999999984698622688885078877
Q T0547 113 KAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGV 191 (611)
Q Consensus 113 k~EL~~ala~g~~~~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~ 191 (611)
.+|+..++++|+++..|+++| +|++++++.|+. .|.. .+++||++||+++.+++.+ ...+.+|+++...+.
T Consensus 69 ~~E~~~~~~aG~~~~~iv~~gp~k~~~~l~~a~~---~~~~-~~~~ds~~el~~l~~~a~~----~~~~~~~~~~~~~~~ 140 (386)
T 2yxx_A 69 KGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLR---EDVR-IVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAK 140 (386)
T ss_dssp HHHHHHHHHTTCCGGGEEECCSCCCHHHHHHHHH---TTCC-EEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTT
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HCCC-CEEECCHHHHHHHHHHCHH----CCCEEEEECCCCCCC
T ss_conf 9999999976979776996089899999999998---3998-5897699999999995521----375268971454444
Q ss_pred CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 64-22046665647889899999999998668987347888633887678899999999999999999971799405872
Q T0547 192 GI-WAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAIN 270 (611)
Q Consensus 192 g~-~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LD 270 (611)
.+ ...||+..||||++.+++.++++.++. + .+.|+|||+|||+.+.+.|..+++++.++.... .++.+|
T Consensus 141 ~~~~~~~g~~~srfG~~~~~~~~~~~~~~~---~-~~~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 210 (386)
T 2yxx_A 141 THPHISTGLKKHKFGIPLEDLDSFMERFRS---M-NIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------GFEEIN 210 (386)
T ss_dssp TSHHHHHHHHHSSSSEEGGGHHHHHHHHTT---S-CEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH------TCSEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---C-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC------CCCEEE
T ss_conf 577646677656568869999999996042---5-776778853556799999999999999986334------885898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 45565547777777777788889999999999999999648998778870756777504114552210223566665455
Q T0547 271 LGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLI 350 (611)
Q Consensus 271 IGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~ 350 (611)
+|||++++|.... ++++.|+..+... ....|.++.||||++++.+++|+++|++++..+....
T Consensus 211 iggG~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~EpGr~l~~~a~~l~t~V~~~k~~~~~~~--- 273 (386)
T 2yxx_A 211 IGGGWGINYSGEE------LDLSSYREKVVPD--------LKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAF--- 273 (386)
T ss_dssp CCCCBCCCSSSCC------CCHHHHHHHTGGG--------GTTCSEEEEEECHHHHGGGEEEEEEEEEEEEETTEEE---
T ss_pred ECCCCCCCCCCCC------CCHHHHHHHHHHH--------HCCCCEECCCCCCHHHHHHEEEEEEEEEEEEECCEEE---
T ss_conf 6787787888666------7989999999876--------4148703037764622610489999999986288179---
Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 65445178999999997307434688999999999999999736966789998999999999999998512345604678
Q T0547 351 LKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLL 430 (611)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~ 430 (611)
T Consensus 274 -------------------------------------------------------------------------------- 273 (386)
T 2yxx_A 274 -------------------------------------------------------------------------------- 273 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 88888755653303244223101000663120135467888651048733643746630146777655677888789607
Q T0547 431 AIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYF 510 (611)
Q Consensus 431 ~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~ 510 (611)
++++-+.+..++ .+..+..+|+.++.+- .+..++.+++-||||...+-..+ . +++++. |. +
T Consensus 274 ---------~~~d~g~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~i~G~~C~~~D~l~~~~--~--lp~l~~-GD--~ 334 (386)
T 2yxx_A 274 ---------VVVDGGMNVLIR-PALYSAYHRIFVLGKQ--GKEMRADVVGPLCESGDVIAYDR--E--LPEVEP-GD--I 334 (386)
T ss_dssp ---------EEESCCTTTCCH-HHHTCCCCCEEETTCC--CCSEEEEEECSSSSTTCEEEEEE--E--ESCCCT-TC--E
T ss_pred ---------EEECCCCCCCCC-HHHHCCCCCCEECCCC--CCEEEEEEEEECCCCCCEEEECC--C--CCCCCC-CC--E
T ss_conf ---------998886545566-6663456773541788--98357999912889988896553--5--799998-99--9
Q ss_pred EEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHH
Q ss_conf 8886020699974775156789857999988996288751378878999987
Q T0547 511 LGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLED 562 (611)
Q Consensus 511 lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g~~i~~~~~gdt~~~vL~~ 562 (611)
|.|+.+|||+..++..+|.|..+.+|-|+ ++| .++-+.+-+|.+|+++.
T Consensus 335 l~~~~~GAY~~~~~~~Fn~~~~p~~v~~~--~~g-~~~~ir~~e~~~d~~~~ 383 (386)
T 2yxx_A 335 IAVENAGAYGYTMSNNYNSTTRPAEVLVR--ENG-RISLIRRRETEMDIFKD 383 (386)
T ss_dssp EEESSCSSSSGGGCCCTTTCCCCEEEEEC--TTS-CEEEEECCCCHHHHTTT
T ss_pred EEECCCCHHHHHHCCCCCCCCCCCEEEEE--CCC-EEEEEECCCCHHHHHHH
T ss_conf 99969762236553777689988599996--699-09999837999999752
No 14
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.45 E-value=1.8e-10 Score=97.17 Aligned_cols=207 Identities=11% Similarity=0.136 Sum_probs=144.9
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
Q ss_conf 79985898747999999999999999999970889872378745337878999999984666785166228899999996
Q T0547 42 GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMA 121 (611)
Q Consensus 42 ~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala 121 (611)
.+.||.+|.+.+.++++++++.+..... .-.+++ -+|++..+.|.+...+.|+. |+.|+|..|....++
T Consensus 43 dl~tP~lvid~~~l~~N~~~m~~~~~~~------g~~~rp--h~Kthks~~ia~~~l~~Ga~---~~~vat~~Ea~~l~~ 111 (426)
T 3gwq_A 43 DVSLPAAVLYADRVEHNLKWMQAFVAEY------GVKLAP--HGKTTMAPQLFRRQLETGAW---GITLATAHQVRAAYH 111 (426)
T ss_dssp CBCSSEEEEEHHHHHHHHHHHHHHHHHH------CCEECC--BCTTTCCHHHHHHHHHTTCC---CEEESSHHHHHHHHH
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHC------CCEEEE--EECCCCCHHHHHHHHHCCCC---EEEEECHHHHHHHHH
T ss_conf 5899749984999999999999988656------974999--83112789999999977998---699865999999997
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 489988178788989999999985-4235710489866889999999999984698622688885078877642204666
Q T0547 122 YNNEGAPITVNGFKDRELINIGFI-AAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGI 200 (611)
Q Consensus 122 ~g~~~~~Ii~nG~Kd~e~I~lAl~-a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~ 200 (611)
+|.+. .++.++.-..+.++.+.. ....+.++.+.+||++.++.+.+.++. .++...+.| +.++..
T Consensus 112 ~Gi~~-illa~~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~-~~~~~~V~i--~vD~G~---------- 177 (426)
T 3gwq_A 112 GGVSR-VLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKS-VNKQLQVLL--ELGVPG---------- 177 (426)
T ss_dssp TTCCE-EEECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH-TTCCEEEEE--EECCTT----------
T ss_pred CCCCC-EEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH-CCEEEEEEE--EECCCC----------
T ss_conf 49998-7883267898999999997317793499998189999999998875-782899987--514686----------
Q ss_pred CCCCCC-CHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCC
Q ss_conf 564788-9899999999998668-98734788863388767889999999999999999997179--9405872455655
Q T0547 201 NSKFGL-TSTELIEAVNLLKENK-LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA--KNLKAINLGGGLA 276 (611)
Q Consensus 201 ~SKFGl-~~~ei~~~i~~l~~~~-~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~--~~l~~LDIGGGlg 276 (611)
.+.|+ +.+++.++++.+.+.. .+ .+.|++.|.|+ ..+.....+..++..+.+..+.+... .....+.-||..+
T Consensus 178 -~R~Gv~~~e~~~~l~~~i~~~~~~l-~l~Gi~~h~g~-~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~ 254 (426)
T 3gwq_A 178 -GRTGVRDAAQRNAVLEAITRYPDTL-KLAGVELYEGV-LKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW 254 (426)
T ss_dssp -SSSSBCSHHHHHHHHHHHHTSTTTE-EEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT
T ss_pred -CCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
T ss_conf -4567667689999999997433775-99999874244-47835499999999999999999751177761354357765
No 15
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.34 E-value=1.5e-10 Score=97.74 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=137.7
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
Q ss_conf 79985898747999999999999999999970889872378745337878999999984666785166228899999996
Q T0547 42 GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMA 121 (611)
Q Consensus 42 ~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala 121 (611)
.+.||.++.+.+.|+++++++.+..... .-+....+|++..+.|++.+.+.|.. |+.|+|..|.....+
T Consensus 11 ~~dTP~lviDl~~l~~N~~~~~~~~~~~--------~~~~~~~vKah~~~~i~~~~~~~G~~---~~~vat~~Ea~~l~~ 79 (376)
T 3llx_A 11 HPDTPYLLIDEAKLKSNINYLKQRVESL--------GSHLRPHLKTLRTLEAAGYLLDSKSA---PATVSTLAEAEAYAK 79 (376)
T ss_dssp SSCSSEEEEEHHHHHHHHHHHHHHHHHT--------TCCBCCBCTTTCBHHHHHHHCSSTTS---CEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCHHHHHHHHHCCCC---EEEECCHHHHHHHHH
T ss_conf 4799669987999999999999864144--------98499996105789999999978999---899647999999997
Q ss_pred CCCCCCCEEECC-C--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 489988178788-9--8999999998542357104898668899999999999846986226888850788776422046
Q T0547 122 YNNEGAPITVNG-F--KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSG 198 (611)
Q Consensus 122 ~g~~~~~Ii~nG-~--Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tg 198 (611)
.|.+.. +++++ . |..... ++. ..+..+.+.+||.+.++.+.+.++. .+...++.|.+ ++..
T Consensus 80 ~g~~~~-l~~~~~~~~~~~~~~--~~~--~~~~~i~~~vds~~~~~~l~~~a~~-~~~~~~v~l~v--d~G~-------- 143 (376)
T 3llx_A 80 AGYTDL-LYAVGIAPAKLKRVA--ALR--QQGINLHILLDNITQAQAVVDYAAE-FGQDFSVFIEI--DSDD-------- 143 (376)
T ss_dssp TTCCEE-EEEEECCGGGHHHHH--HHH--HTTCEEEEEECSHHHHHHHHHHHHH-HTCCCEEEEEB--CSSS--------
T ss_pred CCCCCE-EEECCCCCHHHHHHH--HHH--HCCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEEEE--CCCC--------
T ss_conf 799966-992366807789999--875--1177599996879999999999987-59804776401--3556--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6656478898999999999986689873478886338------8767889999999999999999997179940587245
Q T0547 199 GINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLG------SQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 272 (611)
Q Consensus 199 g~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIG------SQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG 272 (611)
.+.|+..++.......... .+ .+.|++.|-| ++.......++..+....+...++..|. .+..++.|
T Consensus 144 ---~R~G~~~~~~~~~~~~~~~--~~-~~~gl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g 216 (376)
T 3llx_A 144 ---HRGGIKPSDSKLLTIAKTL--GE-HFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGI-HCAITSVG 216 (376)
T ss_dssp ---SSSCBCTTCTHHHHHHHHH--GG-GEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCEEEEC
T ss_pred ---CCCCCCHHHHHHHHHHHHH--CC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEC
T ss_conf ---7688792589999975430--13-33211131311024598899999999999999986424552499-86689993
Q ss_pred CCCCCCCCCC
Q ss_conf 5655477777
Q T0547 273 GGLAVEYSQF 282 (611)
Q Consensus 273 GGlgV~Y~~~ 282 (611)
|+....+...
T Consensus 217 gt~~~~~~~~ 226 (376)
T 3llx_A 217 STPTAHFGED 226 (376)
T ss_dssp CHHHHHHCSC
T ss_pred CCHHHHHHHC
T ss_conf 8604545403
No 16
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=98.40 E-value=0.00016 Score=52.22 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=130.7
Q ss_pred CCCCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 9985898-747999999999999999999970889872378745337----87899999998466678516622889999
Q T0547 43 YKGPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELL 117 (611)
Q Consensus 43 ~~tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~ 117 (611)
..++.++ .+.+-|+++++.+++.. ++-+++=-+|+| -...|.+.+.++|.. +|=|++..|=.
T Consensus 4 ~~~r~~~eIdl~al~~N~~~ir~~~----------~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~---~faVa~~~EA~ 70 (386)
T 1vfs_A 4 TPTRVYAEIDLDAVRANVRALRARA----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAA---WLGTATPEEAL 70 (386)
T ss_dssp CCSSEEEEEEHHHHHHHHHHHHTTS----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHH
T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEECCHHHHH
T ss_conf 9972899984999999999999768----------9984999994524647899999999986989---99983699999
Q ss_pred HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99964899881787889899999999854235710489866889999999999984698622688885078877642204
Q T0547 118 LAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKS 197 (611)
Q Consensus 118 ~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~T 197 (611)
..+..+.+...+++++. +.++++.++. ++..+++.+...++.+.+.++.. +....+-|.|+ +
T Consensus 71 ~LR~~g~~~~ilvl~~~-~~~~~~~~~~-----~~~~~~i~s~~~l~~~~~~~~~~-~~~~~vhLkiD--T--------- 132 (386)
T 1vfs_A 71 ELRAAGIQGRIMCWLWT-PGGPWREAIE-----TDIDVSVSGMWALDEVRAAARAA-GRTARIQLKAD--T--------- 132 (386)
T ss_dssp HHHHTTCCSEEEECCCC-TTCCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHH-TSCEEEEEEBC--S---------
T ss_pred HHHHHCCCCCEEEEECC-CHHHHHHHHH-----HCCCCEECCHHHHHHHHHHHHHC-CCCCEEEEEEC--C---------
T ss_conf 99970899985898158-5056888654-----12230206599999999765513-67632899952--7---------
Q ss_pred CCCCCCCCCCHHHHHHHHH---HHHHCCCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6665647889899999999---9986689873478886338876-7889999999999999999997179940587245
Q T0547 198 GGINSKFGLTSTELIEAVN---LLKENKLLEQFTMIHFHLGSQI-TEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 272 (611)
Q Consensus 198 gg~~SKFGl~~~ei~~~i~---~l~~~~~l~~L~gLHfHIGSQI-~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG 272 (611)
| -.++|+..+|+.++++ .++..+.+ .+.|+=.|..+-- .+.......+++..++...+.+.+.. ...+-++
T Consensus 133 G--M~RlG~~~~e~~~l~~~~~~~~~~~~l-~~~gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~-~~~~h~a 207 (386)
T 1vfs_A 133 G--LGRNGCQPADWAELVGAAVAAQAEGTV-QVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVD-PEVRHIA 207 (386)
T ss_dssp S--CCSSSBCHHHHHHHHHHHHHHHHTTSE-EEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCC-CSEEEEE
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEC
T ss_conf 7--775673713789998876654216876-4689986023344320277899999999999999872788-6056631
No 17
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.22 E-value=0.0006 Score=47.87 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=138.0
Q ss_pred CCCCCEEEECHH---HHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 799858987479---9999999999999999997088-987237874533787899999998466678516622889999
Q T0547 42 GYKGPLLLRFPH---LIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELL 117 (611)
Q Consensus 42 ~~~tPllvrf~d---il~~ri~~l~~aF~~A~~~~~Y-~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~ 117 (611)
+..+|..+.++. -|++++.++.+.-..|....|. ++..+.+=-+|.-+ ...+..+.+.|.. +|=++-..|..
T Consensus 9 ~~~~~~~~~d~~~~~~i~~nl~~v~~ri~~a~~~agR~p~~v~L~aVvK~h~-~~~va~a~~~G~~---~fg~a~vqEa~ 84 (282)
T 3cpg_A 9 HKNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRD-IGEIMAAIDAGVR---MIGENRPQEVT 84 (282)
T ss_dssp -CCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCC-HHHHHHHHHTTCC---CEEESCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHHCCCC---CCCCCHHHHHH
T ss_conf 5443100058788999999999999999999998199901169999978989-9999999986982---11100499999
Q ss_pred HHHH-------------------CCCCCCCEEEC--CCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9996-------------------48998817878--89899999999854235710489866889999999999984698
Q T0547 118 LAMA-------------------YNNEGAPITVN--GFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP 176 (611)
Q Consensus 118 ~ala-------------------~g~~~~~Ii~n--G~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v 176 (611)
.... .+.....|.++ |.-....+..+. . ....+..|||++.++.+.+.+.. .++
T Consensus 85 ~k~~~l~~~~~~a~~~~~~~lr~~~~~~~~i~~~~ig~~q~~~~~~~~--~--~~~~~~sVds~~~a~~l~~~a~~-~~~ 159 (282)
T 3cpg_A 85 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVL--P--VVDTIESVDSIDLAEKISRRAVA-RGI 159 (282)
T ss_dssp HHHHHHHHHHHHTTEEECCC------CCEEECEEECSCCCGGGHHHHT--T--TCSEEEEECCHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH--H--HCCCCCCCCCHHHHHHHHHHHHH-CCC
T ss_conf 999976664322100000000012345760576047746678999998--7--45806556989999999999997-699
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 62268888507887764220466656478898999999999986689873478886338876788999999999999999
Q T0547 177 KPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYT 256 (611)
Q Consensus 177 ~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~ 256 (611)
+..|-|-|+ ||+..+++|.+..++.++++.+.+.+.+ .+.||=.|.++ -.+....+..+++..+++.
T Consensus 160 ~~~V~l~Vd-----------tG~~~~~~~~~~~e~~~~~~~i~~~~~l-~~~GlmTH~a~-add~~~~~~~f~~l~~~~~ 226 (282)
T 3cpg_A 160 TVGVLLEVN-----------ESGEESKSGCDPAHAIRIAQKIGTLDGI-ELQGLMTIGAH-VHDETVIRRGFSHLRKTRD 226 (282)
T ss_dssp CEEEEEEBC-----------CSSCTTSSSBCGGGHHHHHHHHHTCTTE-EEEEEECCCCC-SSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEE-----------CCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 853899980-----------4898766899999999999999977999-85458850487-7885779999999999999
Q ss_pred HHHHCCCC
Q ss_conf 99971799
Q T0547 257 ELRKMGAK 264 (611)
Q Consensus 257 eL~~~g~~ 264 (611)
.+.+.+.+
T Consensus 227 ~l~~~~~~ 234 (282)
T 3cpg_A 227 LILASGEP 234 (282)
T ss_dssp HHHHHCCT
T ss_pred HHHHHCCC
T ss_conf 99981899
No 18
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=98.22 E-value=0.0006 Score=47.88 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHH---HHH-CCCCCCCE
Q ss_conf 999999999999999997088987-2378745337878999999984666785166228899999---996-48998817
Q T0547 55 IQKQIENIYGNFNKARKEFGYKGG-FNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLL---AMA-YNNEGAPI 129 (611)
Q Consensus 55 l~~ri~~l~~aF~~A~~~~~Y~g~-y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~---ala-~g~~~~~I 129 (611)
|.+|+.++.+.-..|.++.|.... .+.+ ||-=++....++++.++|... ||=- =..|+.. .+. ...+.-+-
T Consensus 4 i~~nl~~I~~~I~~a~~~~gR~~~~V~Lv-aVSK~~~~~~I~~a~~~G~r~-fGEN--rvQE~~~K~~~l~~~~~~~i~W 79 (234)
T 1w8g_A 4 IAHNLAQVRDKISAAATRCGRSPEEITLL-AVSKTKPASAIAEAIDAGQRQ-FGEN--YVQEGVDKIRHFQELGVTGLEW 79 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGCEEE-EECTTSCHHHHHHHHHTTCCE-EEES--SHHHHHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEECCCCHHHHHHHHHCCCCH-HHCC--CHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999999809997886999-997888999999999879952-1006--3477888889886530457233
Q ss_pred EECCC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 87889-89999999985423571048986688999999999998469862268888507887764220466656478898
Q T0547 130 TVNGF-KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTS 208 (611)
Q Consensus 130 i~nG~-Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~ 208 (611)
.|=|. -+.. ++.++. . +.++=.|||..-++.|.+.+.. .+..+.+.|-||. +++.+|.|+++
T Consensus 80 HfIG~LQsNK-vk~iv~--~--~~~IhSvDs~kla~~l~~~~~~-~~~~~~vliQVNi-----------s~E~~K~G~~p 142 (234)
T 1w8g_A 80 HFIGPLQSNK-SRLVAE--H--FDWCHTIDRLRIATRLNDQRPA-ELPPLNVLIQINI-----------SDENSKSGIQL 142 (234)
T ss_dssp EECSCCCGGG-HHHHHH--H--CSEEEEECSHHHHHHHHHHSCT-TSCCEEEEEEECC-----------SCTTCCCSBCG
T ss_pred EEECCCHHHH-HHHHCC--H--HHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEEE-----------CCCCCCCCCCC
T ss_conf 2213430322-110000--2--3356665428899999876564-0676117889830-----------46656645221
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999999866898734788863388767889999999999999999997179940587245
Q T0547 209 TELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLG 272 (611)
Q Consensus 209 ~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIG 272 (611)
+++.++++.+.+.+.+ .+.||=. |++.-.|.......+++....+.++...+ +.+..|-+|
T Consensus 143 ~e~~~~~~~~~~~~~l-~~~GLMt-i~~~~~d~~~~~~~f~~l~~~~~~l~~~~-~~~~~LSMG 203 (234)
T 1w8g_A 143 AELDELAAAVAELPRL-RLRGLMA-IPAPESEYVRQFEVARQMAVAFAGLKTRY-PHIDTLSLG 203 (234)
T ss_dssp GGHHHHHHHHHTCTTE-EEEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHHHHS-TTCCEEECC
T ss_pred CCHHHHHHHHCCCCCE-EEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCEECCH
T ss_conf 1078899875137856-7878732-37873037887756999999999987237-998977673
No 19
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=98.15 E-value=0.00055 Score=48.15 Aligned_cols=182 Identities=9% Similarity=0.110 Sum_probs=122.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf 98747999999999999999999970889872378745337----87899999998466678516622889999999648
Q T0547 48 LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYN 123 (611)
Q Consensus 48 lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g 123 (611)
.+.+.+-|+++++.+++.- ++-+..-.+|+| -...|.+.+.+.|.. +|=|++..|-......|
T Consensus 14 a~Idl~al~~N~~~lr~~~----------~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~---~faVa~~~EA~~LR~~g 80 (384)
T 1xfc_A 14 AMVDLGAIEHNVRVLREHA----------GHAQLMAVVKADGYGHGATRVAQTALGAGAA---ELGVATVDEALALRADG 80 (384)
T ss_dssp EEEEHHHHHHHHHHHHHHH----------TTSEEEEECHHHHHTTCHHHHHHHHHHTTCC---EEEESCHHHHHHHHHTT
T ss_pred EEECHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHCC
T ss_conf 9982999999999999768----------9983999992503637889999999977969---99992799999999709
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99881787889899999999854235710489866889999999999984698622688885078877642204666564
Q T0547 124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSK 203 (611)
Q Consensus 124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SK 203 (611)
.....+++.+. +.++++.+.. .++.+++.+...++.+.+.+++ .+..+.+-|-| ++ | -.+
T Consensus 81 i~~~Il~l~~~-~~~~~~~~~~-----~~~~~~i~s~~~~~~l~~~~~~-~~~~~~vhLki--DT---------G--M~R 140 (384)
T 1xfc_A 81 ITAPVLAWLHP-PGIDFGPALL-----ADVQVAVSSLRQLDELLHAVRR-TGRTATVTVKV--DT---------G--LNR 140 (384)
T ss_dssp CCSCEEECCCC-TTCCCHHHHH-----TTCEEEECSHHHHHHHHHHHHH-HCCCEEEEEEB--CS---------S--CCS
T ss_pred CCCCEEEEECC-CHHHHHHHHH-----HCCCEEECCHHHHHHHHHHHHH-HHCCCCEEEEE--CC---------C--CCC
T ss_conf 98866998466-2778999875-----1320133458999998988875-31342147897--46---------7--776
Q ss_pred CCCCHHHHHHHHHHHH---HCCCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7889899999999998---6689873478886338876-7889999999999999999997179
Q T0547 204 FGLTSTELIEAVNLLK---ENKLLEQFTMIHFHLGSQI-TEIHPLKKALNEAGNIYTELRKMGA 263 (611)
Q Consensus 204 FGl~~~ei~~~i~~l~---~~~~l~~L~gLHfHIGSQI-~di~~~~~ai~ea~~ly~eL~~~g~ 263 (611)
+|+..+++.++++.++ ..+.+ .+.|+-.|..+-- .+.......++...++...+.+.+.
T Consensus 141 lG~~~~e~~~~~~~~~~~~~~~~l-~l~Gi~THla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~ 203 (384)
T 1xfc_A 141 NGVGPAQFPAMLTALRQAMAEDAV-RLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGV 203 (384)
T ss_dssp SSBCTTTHHHHHHHHHHHHHTTSE-EEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 786806778888888877642155-510124335403324305569999999999987664078
No 20
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=98.05 E-value=0.00063 Score=47.71 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=107.5
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf 898747999999999999999999970889872378745337----8789999999846667851662288999999964
Q T0547 47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY 122 (611)
Q Consensus 47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~ 122 (611)
-+-.+.+-|+++++.+++.- ++-+.+-.+|+| -...|.+.+.+.|.. +|=|++-.|-...+.+
T Consensus 11 ~leIdl~al~~N~~~ik~~~----------~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~i~Ea~~LR~~ 77 (380)
T 3co8_A 11 RIEFSKSSLAYNVQYTKQVS----------GAKTLWLAVKSNAYGHGLLQVSKIARECGVD---GLAVSVLDEGIAIRQA 77 (380)
T ss_dssp EEEECHHHHHHHHHHHHHHH----------CCSEEEEECHHHHHTTCHHHHHHHHGGGTCC---EEEESSHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHC
T ss_conf 99997999999999999657----------9982999997424647889999999986979---9999089999999973
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547 123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS 202 (611)
Q Consensus 123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S 202 (611)
|.....++++++ +.+++..+.. +++..++.+.+.++.+.+.++ +.+ +-+=++.++ | -.
T Consensus 78 g~~~~Ilvl~~~-~~~~~~~~~~-----~~i~~~i~s~~~l~~~~~~~~---~~~--~~vhLkiDT---------G--M~ 135 (380)
T 3co8_A 78 GIDDFILILGPI-DVKYAPIASK-----YHFLTTVSSLDWLKSADKILG---KEK--LSVNLAVDT---------G--MN 135 (380)
T ss_dssp TCCCCEEECSCC-CGGGHHHHHH-----TTCEEEECCHHHHHHHHHHCT---TCC--EEEEEEBCS---------S--SC
T ss_pred CCCCCEEEECCC-CHHHHHHHHH-----HCEEEEECCHHHHHHHHHHHC---CCC--CCEEEEEEC---------C--CC
T ss_conf 999837862686-7666567765-----056422024999999998631---588--615689826---------8--88
Q ss_pred CCCCCHH-HHHHHHHHHHHCC-CCCCEEEEEEECCCC
Q ss_conf 4788989-9999999998668-987347888633887
Q T0547 203 KFGLTST-ELIEAVNLLKENK-LLEQFTMIHFHLGSQ 237 (611)
Q Consensus 203 KFGl~~~-ei~~~i~~l~~~~-~l~~L~gLHfHIGSQ 237 (611)
++|+..+ ++.++++.+++.. .+ .+.|+-.|..+-
T Consensus 136 RlG~~~~~~~~~~~~~l~~~~~~l-~v~Gi~THfa~a 171 (380)
T 3co8_A 136 RIGVRSKKDLKDEIEFLQEHSDHF-SYDGIFTHFASS 171 (380)
T ss_dssp SSSBCSHHHHHHHHHHHHHCTTTE-EEEEEECCCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCC
T ss_conf 667673366899999976511354-402587135666
No 21
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=98.01 E-value=0.0015 Score=44.97 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=128.9
Q ss_pred CCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf 85898-747999999999999999999970889872378745337----8789999999846667851662288999999
Q T0547 45 GPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLA 119 (611)
Q Consensus 45 tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~a 119 (611)
-|.++ .+.+-|+++++.+++... ++-+.+--+|+| -...|.+.+.+.|.. +|=|++..|-...
T Consensus 10 r~t~~eIdl~al~~Ni~~i~~~~~---------~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~i~EA~~L 77 (391)
T 2vd8_A 10 RDTWVEVDLDAIYNNVTHIXEFIP---------SDVEIFAVVKGNAYGHDYVPVAXIALEAGAT---RLAVAFLDEALVL 77 (391)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHSC---------TTCEEEEECHHHHHTTCHHHHHHHHHHTTCC---EEEESSHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEEEEECCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHH
T ss_conf 988999859999999999997479---------9987999994603658879999999987989---9999169999999
Q ss_pred HHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 96489988178788989999999985423571048986688999999999998469862268888507887764220466
Q T0547 120 MAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGG 199 (611)
Q Consensus 120 la~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg 199 (611)
+.+|.....+++++. +.++++.+. .+++.+++-+.+++..+.+.++ .+. .+-+-++.++.-
T Consensus 78 R~~gi~~~Ilvl~~~-~~~~~~~~~-----~~~~~~~i~~~~~l~~~~~~~~--~~~--~~~vhlkiDTGM--------- 138 (391)
T 2vd8_A 78 RRAGITAPILVLGPS-PPRDINVAA-----ENDVALTVFQXEWVDEAIXLWD--GSS--TMXYHINFDSGM--------- 138 (391)
T ss_dssp HHTTCCSCEEECSCC-CGGGHHHHH-----HTTEEEECCCHHHHHHHHHHCC--SSC--CEEEEEEBCSSC---------
T ss_pred HHCCCCCCEEEECCC-CHHHHHHHH-----HHCCCCEECCHHHHHHHHHHHH--CCC--CEEEEEEECCCC---------
T ss_conf 973999988997288-826667877-----5146531214889999999861--479--648999952899---------
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6564788989-9999999998668987347888633887-67889999999999999999997179
Q T0547 200 INSKFGLTST-ELIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRKMGA 263 (611)
Q Consensus 200 ~~SKFGl~~~-ei~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~~g~ 263 (611)
+++|+... ++..+++.++..+.+ .+.|+-.|..+- ..+.......+++..++...+.+.+.
T Consensus 139 --~RlG~~~~~e~~~~~~~l~~~~~l-~l~Gi~SH~a~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~ 201 (391)
T 2vd8_A 139 --GRIGIRERXELXGFLXSLEGAPFL-ELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGV 201 (391)
T ss_dssp --CSSSBCCHHHHHHHHHHHTTCTTE-EEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --CCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --858888289999999999728996-640224213768873135678899999999999986189
No 22
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=97.95 E-value=0.00038 Score=49.38 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=112.4
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf 8987479999999999999999999708898723787453378----789999999846667851662288999999964
Q T0547 47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY 122 (611)
Q Consensus 47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~ 122 (611)
....+.+-|+++++.+++... +-+.+--||+|- ...|.+.+.+.|.. +|=|++..|-......
T Consensus 22 ~~~Idl~al~~N~~~i~~~~~----------~~~i~aVVKanAYGhG~~~va~~l~~~Gv~---~faVa~i~Ea~~LR~~ 88 (376)
T 3kw3_A 22 IATIDVRAIVANYRTLAQHVA----------PTECSAVVKANAYGLGAHKIAPALYQAGCR---TFFVAQIEEALQLKAV 88 (376)
T ss_dssp EEEECHHHHHHHHHHHHHHHT----------TSEECEECHHHHHTTCHHHHHHHHHHTTCC---EEEESSHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHCC----------CCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHH
T ss_conf 999859999999999997579----------983999996652516499999999986969---9999388999999972
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547 123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS 202 (611)
Q Consensus 123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S 202 (611)
+.+...|+..+.-..++.+.+.. .+...++.+.+.++.+.+.++.+ +....+- ++.++ | -.
T Consensus 89 g~~~~illl~~~~~~~~~~~~~~-----~~~~~~i~s~~~l~~l~~~a~~~-~~~~~vh--LkvDT---------G--M~ 149 (376)
T 3kw3_A 89 LPENVMIALLNGFPHKAEEFVAQ-----SGIIPLLNSWSTIEDWQTLCQKK-NKKFPAI--IQVDT---------N--MS 149 (376)
T ss_dssp SCSSCEEEETTCCCTTCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHH-TCCCEEE--EEBCS---------S--CC
T ss_pred CCCCCHHHHCCCCCHHHHHHHHH-----CCCCCEECCHHHHHHHHHHHHHC-CCCEEEE--EEECC---------C--CC
T ss_conf 78530677617897789999874-----14564106599999999999972-8970599--99658---------8--87
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 47889899999999998668987347888633887
Q T0547 203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ 237 (611)
Q Consensus 203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ 237 (611)
++|+..+|+.++++.++..+.+ .+.|+-.|..+-
T Consensus 150 RlG~~~~e~~~~i~~~~~~~~l-~i~Gi~THfa~a 183 (376)
T 3kw3_A 150 RLGLDKKELQKLIKNPTIFEKA-EIKYILSHLANG 183 (376)
T ss_dssp SSSBCHHHHHHHHHCCTHHHHS-EEEEEECCCSST
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCC
T ss_conf 5677815678999887641465-268897201233
No 23
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=97.91 E-value=0.0016 Score=44.76 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf 85898-747999999999999999999970889872378745337----8789999999846667851662288999999
Q T0547 45 GPLLL-RFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLA 119 (611)
Q Consensus 45 tPllv-rf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~a 119 (611)
-|.++ .+.+-|+++++.+++... ++-+.+--+|+| -...|++.+.+.|.. +|=|++-.|-...
T Consensus 6 r~tw~eIdl~al~~N~~~i~~~~~---------~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~---~faVa~i~EA~~L 73 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLP---------DDTHIMAVVKANAYGHGDVQVARTALEAGAS---RLAVAFLDEALAL 73 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSC---------TTCEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC---------CCCEEEEEEEEECCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHH
T ss_conf 878999969999999999997489---------9997999981603648879999999986979---9997689999999
Q ss_pred HHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 96489988178788989999999985423571048986688999999999998469862268888507887764220466
Q T0547 120 MAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGG 199 (611)
Q Consensus 120 la~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg 199 (611)
+.+|.+...+++++. ..++++.+.. +++.+++.+.+.+..+...++ .+.. +-+-++.++ |-
T Consensus 74 R~~gi~~~Ilvl~~~-~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~--~~~~--~~vhLkiDT---------GM 134 (388)
T 1bd0_A 74 REKGIEAPILVLGAS-RPADAALAAQ-----QRIALTVFRSDWLEEASALYS--GPFP--IHFHLKMDT---------GM 134 (388)
T ss_dssp HHTTCCSCEEECSCC-CGGGHHHHHH-----TTEEEEECCHHHHHHHHHHCC--CSSC--EEEEEEBCS---------SS
T ss_pred HHCCCCCCEEEECCC-CHHHHHHHHC-----CCCCCEEEHHHHHHHHHHHHC--CCCC--EEEEEEECC---------CC
T ss_conf 971899848996278-7688776413-----454323404998876765541--4774--489999816---------88
Q ss_pred CCCCCCCCHHH-HHHHHHHHHHCCCCCCEEEEEEECCCCC-CCHHH
Q ss_conf 65647889899-9999999986689873478886338876-78899
Q T0547 200 INSKFGLTSTE-LIEAVNLLKENKLLEQFTMIHFHLGSQI-TEIHP 243 (611)
Q Consensus 200 ~~SKFGl~~~e-i~~~i~~l~~~~~l~~L~gLHfHIGSQI-~di~~ 243 (611)
.++|+...| +..+++.++..+.+ .+.|+..|..+-- .+...
T Consensus 135 --~RlG~~~~e~~~~~~~~~~~~~~l-~l~Gi~tHla~ad~~~~~~ 177 (388)
T 1bd0_A 135 --GRLGVKDEEETKRIVALIERHPHF-VLEGLYTHFATADEVNTDY 177 (388)
T ss_dssp --CSSSBCSHHHHHHHHHHHHHSTTE-EEEEEECCCSSTTSSCCHH
T ss_pred --CCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCHH
T ss_conf --756865477899999999858896-0468884256777777189
No 24
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=97.89 E-value=0.0023 Score=43.45 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=108.6
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf 898747999999999999999999970889872378745337----8789999999846667851662288999999964
Q T0547 47 LLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY 122 (611)
Q Consensus 47 llvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~ 122 (611)
-...+.+-|+++++.+++. . | -+.+--+|+| -...|.+.+ +.|.. +|=|++..|-...+.+
T Consensus 5 ~~eIdl~al~~N~~~lr~~-~---------~-~ki~aVVKanAYGhG~~~ia~~L-~~g~~---~faVa~~~Ea~~LR~~ 69 (357)
T 1rcq_A 5 RALIDLQALRHNYRLAREA-T---------G-ARALAVIKADAYGHGAVRCAEAL-AAEAD---GFAVACIEEGLELREA 69 (357)
T ss_dssp EEEEEHHHHHHHHHHHHHH-H---------C-SEEEEECHHHHHTTCHHHHHHHH-TTTCS---EEEESSHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHHHHCC-C---------C-CCEEEEEEECCCCCCHHHHHHHH-HHCCC---EEEEEEHHHHHHHHHH
T ss_conf 9998499999999999706-6---------9-94999996653538799999999-95699---7999899999999970
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89988178788989999999985423571048986688999999999998469862268888507887764220466656
Q T0547 123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINS 202 (611)
Q Consensus 123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~S 202 (611)
+.....++++|.-+.++.+.+.. +++.+++.+...++.+.+.+ .+....+- ++.+ || -+
T Consensus 70 g~~~~il~l~~~~~~~~~~~~~~-----~~i~~~i~s~~~~~~l~~~~---~~~~~~vh--LkvD---------TG--M~ 128 (357)
T 1rcq_A 70 GIRQPILLLEGFFEASELELIVA-----HDFWCVVHCAWQLEAIERAS---LARPLNVW--LKMD---------SG--MH 128 (357)
T ss_dssp TCCSCEEETTCCSSGGGHHHHHH-----TTEEEEECSHHHHHHHHHCC---CSSCEEEE--EEBC---------SS--SC
T ss_pred CCCCCEECCCCCCCHHHHHHHHH-----HCCCCCCCHHHHHHHHHHHC---CCCCEEEE--EEEC---------CC--CC
T ss_conf 99642011001355778898886-----31465658799999999746---36643699--9972---------67--64
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 47889899999999998668987347888633887
Q T0547 203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ 237 (611)
Q Consensus 203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ 237 (611)
++|+..+|+.++++.++..+.+ .+.|+..|..|-
T Consensus 129 RlG~~~~e~~~~~~~~~~~~~~-~~~gi~tH~a~a 162 (357)
T 1rcq_A 129 RVGFFPEDFRAAHERLRASGKV-AKIVMMSHFSRA 162 (357)
T ss_dssp SSSBCHHHHHHHHHHHHHTTCE-EEEEEECCCSST
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-CCEEEEEEECCC
T ss_conf 3356837888889998641454-403456530335
No 25
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=97.88 E-value=0.0024 Score=43.32 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred CCCCE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHC-CCCCCEEEECCHHHH
Q ss_conf 99858-98747999999999999999999970889872378745337----8789999999846-667851662288999
Q T0547 43 YKGPL-LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLG-KDYNYGLEAGSKAEL 116 (611)
Q Consensus 43 ~~tPl-lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G-~~~~~GlEv~Sk~EL 116 (611)
..-|. +-.+.+-|+++++.+++.- + .-+++-.+|+| -...|.+.+.+.| .+ +|=|++..|-
T Consensus 6 ~~R~t~leIdl~al~~N~~~ir~~~---------~-~~~i~aVVKAnAYGhG~~~va~~l~~~gg~d---~faVa~ieEA 72 (395)
T 3hur_A 6 IHRPTWVSVDLDAAAHNLQEIREWT---------K-AKKVYAVLKADGYGLGAIPLAKAFQETASAD---ALIVSNLDEA 72 (395)
T ss_dssp CSCCEEEEEEHHHHHHHHHHHHHHH---------T-CSEEEEECCHHHHHTCHHHHHHHHHHTTCCS---EEEESCHHHH
T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHC---------C-CCEEEEEEEECCCCCCHHHHHHHHHHHCCCC---EEEEEEHHHH
T ss_conf 8899899985999999999999568---------9-9859999956226588899999999878999---9999289999
Q ss_pred HHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 99996489988178788989999999985423571048986688999999999998469862268888507887764220
Q T0547 117 LLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAK 196 (611)
Q Consensus 117 ~~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~ 196 (611)
...+..+.....+++++. +.++++.+.. +++.+++-+.+.|+.+.+ .+...++- ++.+
T Consensus 73 ~~LR~~g~~~~Ilvl~~~-~~~e~~~~~~-----~~i~~~i~~~~~l~~~~~-----~~~~~~vh--LkiD--------- 130 (395)
T 3hur_A 73 LELRQADLTLPIWVLGAW-DYSDLKLFID-----HDIVITIPSLAWLQNLPD-----FEGTLKVS--LAID--------- 130 (395)
T ss_dssp HHHHHTTCCSCEEESSCC-CGGGHHHHHH-----TTEEEEECCHHHHHTCCC-----CSSCEEEE--EEBC---------
T ss_pred HHHHHCCCCCEEEEECCC-CHHHHHHHHH-----HHHCCCCCHHHHHHHHHH-----CCCCCEEE--EEEE---------
T ss_conf 999966999839983789-9799999987-----443233226887545553-----16873599--9980---------
Q ss_pred CCCCCCCCCCCHHHHHHHH-HHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4666564788989999999-99986689873478886338876788999999999999999999
Q T0547 197 SGGINSKFGLTSTELIEAV-NLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR 259 (611)
Q Consensus 197 Tgg~~SKFGl~~~ei~~~i-~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~ 259 (611)
|| -.++|+...+..+.+ +.++..+.+ .+.|+..|..|--...........+..+.+.+..
T Consensus 131 TG--M~RlG~~~~e~~~~~~~~~~~~~~l-~l~Gi~SHla~ad~~~~~~~~~~~~~~~~f~~~~ 191 (395)
T 3hur_A 131 TG--MTRIGFDKADEISAAKKIIDKNPQL-DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELT 191 (395)
T ss_dssp CS--SCSSSBCCHHHHHHHHHHHHHCTTE-EEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78--8878888588899999999857886-4899988526666345401689999999999999
No 26
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=97.87 E-value=0.0018 Score=44.26 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=114.1
Q ss_pred CCCCE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 99858-98747999999999999999999970889872378745337----87899999998466678516622889999
Q T0547 43 YKGPL-LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELL 117 (611)
Q Consensus 43 ~~tPl-lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~ 117 (611)
+.-|- +..+.+-|+++++.+++.. +..-+++=-+|+| -...|.+.+.+.|.. +|=|++-.|-.
T Consensus 5 ~~r~~~leIdl~al~~N~~~i~~~~---------~~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~---~faVa~i~EA~ 72 (371)
T 3e5p_A 5 WHRPTRLHIDTQAITENVQKECQRL---------PEGTALFAVVKANGYGHGAVESAKAAKKGGAT---GFCVALLDEAI 72 (371)
T ss_dssp TTSSCEEEECHHHHHHHHHHHHHSS---------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCC---CEEESSHHHHH
T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHC---------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHH
T ss_conf 5789899996999999999999857---------99897999995534647889999999987979---99981999999
Q ss_pred HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99964899881787889899999999854235710489866889999999999984698622688885078877642204
Q T0547 118 LAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKS 197 (611)
Q Consensus 118 ~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~T 197 (611)
....+|.....+++++. +.++++.++. +++.+++-|.+.++.+++.+..+.+.+.++-|-+ ++
T Consensus 73 ~LR~~g~~~~ilvl~~~-~~~~~~~~~~-----~~l~~~i~s~~~l~~~~~~~a~~~~~~~~vhlki--DT--------- 135 (371)
T 3e5p_A 73 ELREAGVQDPILILSVV-DLAYVPLLIQ-----YDLSVTVATQEWLEAALQQLTPESNTPLRVHLKV--DT--------- 135 (371)
T ss_dssp HHHTTTCCSCEEEEEEC-CGGGHHHHHH-----HTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEB--CS---------
T ss_pred HHHHHCCCCCEEEEECC-CHHHHHHHHH-----CCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEE--EC---------
T ss_conf 99971899975776057-8789999986-----4981797358998888998888539944799998--27---------
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 666564788-989999999999866898734788863388767
Q T0547 198 GGINSKFGL-TSTELIEAVNLLKENKLLEQFTMIHFHLGSQIT 239 (611)
Q Consensus 198 gg~~SKFGl-~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~ 239 (611)
| -.++|+ +.+++..+++.++..+.+ .+.|+..|..|--.
T Consensus 136 G--M~RlG~~~~ee~~~~~~~~~~~~~~-~~~gi~th~~~~~~ 175 (371)
T 3e5p_A 136 G--MGRIGFLTPEETKQAVRFVQSHKEF-LWEGIFTHFSTADE 175 (371)
T ss_dssp S--SCSSSBCSSHHHHHHHHHHHHSTTB-CCCEEECCCSCTTS
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHCE-ECCEEEEECCCCCC
T ss_conf 9--8737987378889999998762061-00202221014343
No 27
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=97.51 E-value=0.0033 Score=42.34 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=109.5
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf 9985898747999999999999999999970889872378745337----878999999984666785166228899999
Q T0547 43 YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLL 118 (611)
Q Consensus 43 ~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ 118 (611)
.....+..+.+-|+++++.+++- . +.-+.+--+|+| -...|.+.+.+.+ +|=|++-.|=..
T Consensus 21 ~~~a~~~Idl~al~~N~~~ir~~-~---------~~~~i~aVVKAnAYGhG~~~va~~l~~~~-----~faVa~i~EA~~ 85 (379)
T 2rjg_A 21 MQAATVVINRRALRHNLQRLREL-A---------PASKMVAVVKANAYGHGLLETARTLPDAD-----AFGVARLEEALR 85 (379)
T ss_dssp CCCSEEEEEHHHHHHHHHHHHHH-S---------TTSEEEEECHHHHHTTCHHHHHHHCTTCS-----EEEESSHHHHHH
T ss_pred CCCEEEEECHHHHHHHHHHHHHH-C---------CCCEEEEEEEECCCCCCHHHHHHHHHHCC-----EEEEEEHHHHHH
T ss_conf 67669999799999999999966-8---------99869999956425487899999997099-----899959999999
Q ss_pred HHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99648998817878898999999998542357104898668899999999999846986226888850788776422046
Q T0547 119 AMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSG 198 (611)
Q Consensus 119 ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tg 198 (611)
.+.++.....+++.|.-+.+++..+.. +++.+++-|...++.+.+.. .+....+- ++.+ ||
T Consensus 86 LR~~gi~~~ilil~~~~~~~~~~~~~~-----~~i~~~i~s~~~l~~l~~~~---~~~~~~vh--LkvD---------TG 146 (379)
T 2rjg_A 86 LRAGGITKPVLLLEGFFDARDLPTISA-----QHFHTAVHNEEQLAALEEAS---LDEPVTVW--MKLD---------TG 146 (379)
T ss_dssp HHHTTCCSCEEETTCCSCGGGHHHHHH-----TTEEEEECSHHHHHHHHHCC---CSSCBCEE--EEBC---------SS
T ss_pred HHHHCCCCCEEECCCCCCHHHHHHHHH-----CCCCEEECCHHHHHHHHHHH---CCCCEEEE--EEEE---------CC
T ss_conf 997389987220346788788999997-----37715757899999999861---38980799--9980---------88
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 6656478898999999999986689873478886338876
Q T0547 199 GINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQI 238 (611)
Q Consensus 199 g~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI 238 (611)
-.++|+..+|+..++++++..+....+.|+--|..+--
T Consensus 147 --M~RlG~~~~e~~~~~~~~~~~~~~l~~~Gi~THfa~ad 184 (379)
T 2rjg_A 147 --MHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARAD 184 (379)
T ss_dssp --CCSSSBCHHHHHHHHHHHTTCSSBCSSCEEECCCSSTT
T ss_pred --CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf --88788883055789999987225442125884657765
No 28
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=97.41 E-value=0.01 Score=38.51 Aligned_cols=179 Identities=14% Similarity=0.092 Sum_probs=115.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC----CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf 98747999999999999999999970889872378745337----87899999998466678516622889999999648
Q T0547 48 LLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVN----QYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYN 123 (611)
Q Consensus 48 lvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN----~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g 123 (611)
.-.+-+-|+++++.+++- . ++-+.+=-+|+| -...|.+.+.+.|.+ +|=|++-.|-...+.+|
T Consensus 6 ~~IdL~ai~~N~~~ir~~-~---------~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~---~faVa~~~EA~~LR~~g 72 (361)
T 2dy3_A 6 TKIDLDAIAHNTRVLKQM-A---------GPAKLMAVVKANAYNHGVEKVAPVIAAHGAD---AFGVATLAEAMQLRDIG 72 (361)
T ss_dssp EEECHHHHHHHHHHHHHH-H---------TTSEEEEECHHHHHHTCHHHHHHHHHHTTCC---EEEESSHHHHHHHHHTT
T ss_pred EEEEHHHHHHHHHHHHHH-C---------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEEHHHHHHHHHHC
T ss_conf 998799999999999845-7---------9983999996553647899999999986959---99984299999999708
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99881787889899999999854235710489866889999999999984698622688885078877642204666564
Q T0547 124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSK 203 (611)
Q Consensus 124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SK 203 (611)
.....++..+.-. ++++.++. .++.+++-|..+++.+.+ ..+.+.++- ++.+ || -.+
T Consensus 73 ~~~~Il~l~~~~~-~~~~~~~~-----~~~~~~i~s~~~~~~~~~----~~~~~~~vh--LkiD---------TG--M~R 129 (361)
T 2dy3_A 73 ISQEVLCWIWTPE-QDFRAAID-----RNIDLAVISPAHAKALIE----TDAEHIRVS--IKID---------SG--LHR 129 (361)
T ss_dssp CCSEEEECCCCTT-SCHHHHHT-----TTCEEEECSHHHHHHHHT----SCCSCEEEE--EEBC---------CS--SCS
T ss_pred CCCCEEEECCCCH-HHHHHHHH-----HCEEEEEEHHHHHHHHHH----HCCCCCEEE--EEEC---------CC--CCC
T ss_conf 9997687458985-89999875-----030235532888889998----617885499--9976---------89--976
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7889899999999998668987347888633887-67889999999999999999997179
Q T0547 204 FGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRKMGA 263 (611)
Q Consensus 204 FGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~~g~ 263 (611)
+|+..+|+.++++.++..+.+ .+.|+..|..+- ..+.......++...++...+.+.+.
T Consensus 130 lG~~~~e~~~~~~~~~~~~~l-~~~gi~TH~a~ad~~d~~~~~~Q~~~F~~~~~~~~~~~~ 189 (361)
T 2dy3_A 130 SGVDEQEWEGVFSALAAAPHI-EVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGL 189 (361)
T ss_dssp SSBCHHHHHHHHHHHHTCTTE-EEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 788989999888888753475-257789874157864303699999999999998775278
No 29
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=89.68 E-value=1 Score=23.51 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE
Q ss_conf 99999999999999999708---898723787453378789999999846667851662288999999964899881787
Q T0547 55 IQKQIENIYGNFNKARKEFG---YKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV 131 (611)
Q Consensus 55 l~~ri~~l~~aF~~A~~~~~---Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~ 131 (611)
|..|+.++.+.-..|.+..+ -+...+.+=..| ++-...++++.++|... || -.=-.|+..-.....++-.-.|
T Consensus 14 l~~~~~~v~~~i~~a~~~~~~~r~~~~v~L~aVsK-~~~~~~i~~~~~~G~~~-fG--EnrvQE~~~K~~~l~~~~~wH~ 89 (256)
T 1ct5_A 14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSK-LKPASDIQILYDHGVRE-FG--ENYVQELIEKAKLLPDDIKWHF 89 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------CCEEEEECT-TSCHHHHHHHHHHTCCE-EE--ECCHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCHHHHHHHHHCCCCE-EE--CCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999999999998714899957669999979-98999999999859960-11--2459999999987378955988
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCC---EEEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 88989999999985423571048986688999999999998469862---268888507887764220466656478898
Q T0547 132 NGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKP---NIGLRVRLHSAGVGIWAKSGGINSKFGLTS 208 (611)
Q Consensus 132 nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p---~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~ 208 (611)
=|-=...-++.++.. .-+..+-.|||+..++.|.+.+... +... .+.|-|| ++++.+|+|++.
T Consensus 90 IG~LQ~NKvk~~~~~--~~~~~IhSVDsl~la~~L~~~a~k~-~~~~~~~~vlIQVN-----------i~~E~sK~G~~~ 155 (256)
T 1ct5_A 90 IGGLQTNKCKDLAKV--PNLYSVETIDSLKKAKKLNESRAKF-QPDCNPILCNVQIN-----------TSHEDQKSGLNN 155 (256)
T ss_dssp CSCCCGGGHHHHHHC--TTEEEEEEECSHHHHHHHHHHHHHH-CTTSCCEEEEEEBC-----------CSSSCCSSSBCC
T ss_pred ECCCCCCHHHHHHHH--CCEEEECCCCHHHHHHHHHHHHHHH-CCCCCCCEEEEEEE-----------CCCCCCCCCCCC
T ss_conf 789975008999701--1221551235499999999999984-78778724899996-----------587667789993
Q ss_pred H-HHHHHHHHHH--HCCCCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9-9999999998--66898734788863388767-889999999999999999997179940587
Q T0547 209 T-ELIEAVNLLK--ENKLLEQFTMIHFHLGSQIT-EIHPLKKALNEAGNIYTELRKMGAKNLKAI 269 (611)
Q Consensus 209 ~-ei~~~i~~l~--~~~~l~~L~gLHfHIGSQI~-di~~~~~ai~ea~~ly~eL~~~g~~~l~~L 269 (611)
+ ++..+.+.+. ..+.+ .++||=.|--.-.. +-............++.++.+.+.. ...|
T Consensus 156 ~~~~~~l~e~~~~~~l~~L-~l~GLMTi~p~a~~~d~~~~~~~F~~l~~l~~~l~~~~~~-~~~L 218 (256)
T 1ct5_A 156 EAEIFEVIDFFLSEECKYI-KLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT-SLKL 218 (256)
T ss_dssp HHHHHHHHHHHHSTTCCSE-EEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred HHHHHHHHHHHHHHHCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEE
T ss_conf 8999999999998648787-6358054168889821017889999999999998606699-9988
No 30
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=62.93 E-value=5.7 Score=17.84 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99881787889899999999854235710489866-8899999999999846986226888
Q T0547 124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIE-GLNELEAIIDIAKERFKPKPNIGLR 183 (611)
Q Consensus 124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViD-s~~EL~~I~~ia~~~l~v~p~IgiR 183 (611)
.++.+|.==||-+-..... ++++.|.+|+ -+| |..-++...+.++. .+..+++-++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~--la~~~~~~v~-gvd~s~~~~~~a~~~~~~-~gl~~~i~~~ 137 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARF--LVRKFGVSID-CLNIAPVQNKRNEEYNNQ-AGLADNITVK 137 (297)
T ss_dssp CTTCEEEEETCTTSHHHHH--HHHHHCCEEE-EEESCHHHHHHHHHHHHH-HTCTTTEEEE
T ss_pred CCCCEEEEECCCCCHHHHH--HHHHCCCEEE-EEECCHHHHHHHHHHHHH-CCCCCCCCCC
T ss_conf 9899899977999989999--9996498599-996742888898764221-0455543322
No 31
>2g5x_A Lychnin, ribosome-inactivating protein; alpha-beta protein, hydrolase; 1.70A {Lychnis chalcedonica}
Probab=51.97 E-value=8.5 Score=16.56 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=13.7
Q ss_pred CCHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 20699974775156789857999988996
Q T0547 516 VGAYQEVLGMKHNLFTHPTEAIISINEKG 544 (611)
Q Consensus 516 vGAYQeiLGd~HNLfg~t~~v~v~~~~~g 544 (611)
-++...+-+..-+||-|++.....+.=+|
T Consensus 89 ~d~~~~~~~~~~~lf~~~~~~~~~L~f~g 117 (234)
T 2g5x_A 89 SDEYRALSGKYKSIFTDAEVLAPALPCAS 117 (234)
T ss_dssp TTTHHHHGGGHHHHSTTCCEECCCCSSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 88554564222333468732031077889
No 32
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=49.71 E-value=6.7 Score=17.31 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=24.8
Q ss_pred CCC-CCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 489-9881787889899999999854235710489866-88999999999998469862268888
Q T0547 122 YNN-EGAPITVNGFKDRELINIGFIAAEMGHNITLTIE-GLNELEAIIDIAKERFKPKPNIGLRV 184 (611)
Q Consensus 122 ~g~-~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViD-s~~EL~~I~~ia~~~l~v~p~IgiRv 184 (611)
++. ++.+|+==||-+-..... ++..-|.+++ -+| |..-++...+.... .+...++-.+.
T Consensus 57 ~~l~~g~~VLDiGcG~G~~~~~--la~~~~~~v~-gvD~s~~~~~~ar~~~~~-~~~~~~~~~~~ 117 (273)
T 3bus_A 57 LDVRSGDRVLDVGCGIGKPAVR--LATARDVRVT-GISISRPQVNQANARATA-AGLANRVTFSY 117 (273)
T ss_dssp SCCCTTCEEEEESCTTSHHHHH--HHHHSCCEEE-EEESCHHHHHHHHHHHHH-TTCTTTEEEEE
T ss_pred CCCCCCCEEEEECCCCCHHHHH--HHHHCCCEEE-EEECCHHHHHHHHHHHHH-HCCCCCCCCCC
T ss_conf 5989999999977889899999--9986796899-972868899998777776-14565333202
No 33
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=44.27 E-value=12 Score=15.37 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE--ECC
Q ss_conf 546788865104873364374663014677765567788878960788860206999747751567898579999--889
Q T0547 465 LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS--INE 542 (611)
Q Consensus 465 l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~--~~~ 542 (611)
|.|++.. ...-.|+.-..|+||+++...+. -.+. .+ .|-| .|.+|+|=.-.|.. . | -..|.|. +.+
T Consensus 24 L~~~~~~-~~~~~i~~~~Td~dGRi~~l~~~----~~~~-~G-~YeL-~F~~~~Yf~~~~~~-~-f--~p~V~i~F~i~~ 91 (119)
T 1oo2_A 24 VSQKTAD-GGWTQIATGVTDATGEIHNLITE----QQFP-AG-VYRV-EFDTKAYWTNQGST-P-F--HEVAEVVFDAHP 91 (119)
T ss_dssp EEEECTT-SCEEEEEEEECCTTSCCTTCSCG----GGCC-SE-EEEE-EECHHHHHHHTTCC-C-S--EEEEEEEEEECC
T ss_pred EEEECCC-CCEEEEEEEEECCCCCCCCCCCC----CCCC-CC-EEEE-EEEHHHHHHHCCCC-C-C--CCEEEEEEEECC
T ss_conf 9998899-98389999987899868675674----5356-81-0999-99768989860999-8-8--853799999778
Q ss_pred --CC-EEEEEEC
Q ss_conf --96-2887513
Q T0547 543 --KG-YEVEGII 551 (611)
Q Consensus 543 --~g-~~i~~~~ 551 (611)
++ |.|--++
T Consensus 92 d~~~hYHVPlLl 103 (119)
T 1oo2_A 92 EGHGHYTLALLL 103 (119)
T ss_dssp SSSCCEEEEEEE
T ss_pred CCCCCEEEEEEE
T ss_conf 999870677797
No 34
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide, dipteran specificity, conformational change; 1.75A {Bacillus thuringiensis serovarisraelensis}
Probab=41.55 E-value=5.3 Score=18.12 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC----CCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 7999999999999999999970----88987237874533787899999998466678516622889999
Q T0547 52 PHLIQKQIENIYGNFNKARKEF----GYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELL 117 (611)
Q Consensus 52 ~dil~~ri~~l~~aF~~A~~~~----~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~ 117 (611)
...++.|.+.+...|..++... +|+...-++||.=||=|.-+++..+..|.+| |+.-.-.....
T Consensus 60 ~~~v~~~f~~~~~~f~~~mp~f~~~~~yev~lLp~YaqaANLHLlLLRD~i~~G~~W--g~~~~~i~~~y 127 (558)
T 1w99_A 60 RTAVITQFNLTSAKLRETAVYFSNLVGYELLLLPIYAQVANFNLLLIRDGLINAQEW--SLARSAGDQLY 127 (558)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSTTCTTTTHHHHHHHHHHHHHHHHHHHHTHHHH--CSSCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf 999999999999999985056512688610048999999999999998999877431--99832689999
No 35
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3l90_A*
Probab=39.61 E-value=14 Score=14.87 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 898999999999986689873478886338876
Q T0547 206 LTSTELIEAVNLLKENKLLEQFTMIHFHLGSQI 238 (611)
Q Consensus 206 l~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI 238 (611)
+++.++.+.++.+++.... . .++|||=-.+.
T Consensus 206 ~~P~~v~~~i~~~~~~~~~-~-ig~H~HNd~Gl 236 (423)
T 3ivs_A 206 ATPRQVYDLIRTLRGVVSC-D-IECHFHNDTGM 236 (423)
T ss_dssp CCHHHHHHHHHHHHHHCSS-E-EEEEEBCTTSC
T ss_pred CCHHHHHHHEECCCCCCCC-E-EEEEECCCCCC
T ss_conf 7716753110021133234-0-58997898562
No 36
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=38.20 E-value=15 Score=14.72 Aligned_cols=111 Identities=20% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 78877642204666564788989999999999866898734788863388767889999999999999999997179940
Q T0547 187 HSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNL 266 (611)
Q Consensus 187 ~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l 266 (611)
++-+.|...... .+|--.. ..+.+........- .++--=|-+|.|......|-.|++. +...+.+.|+..+
T Consensus 56 sT~g~Ge~P~~~---~~f~~~~--~~~~~~~~~~~~l~-g~~~AvFGlGd~~~~~~~Fc~a~~~---l~~~l~~~GA~~i 126 (182)
T 2wc1_A 56 PTLGDGQLPGLS---ANAASES--WEEFLPRIADQDFS-GKTIALFGLGDQVTYPLEFVNALFF---LHEFFSDRGANVV 126 (182)
T ss_dssp ECBTTTBCSSGG---GTCSSCC--HHHHGGGGTTCCCT-TCEEEEEEECCTTTCTTSTTTHHHH---HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCH---HHHHHHH--HHHHHHHCCCCCCC-CCEEEEEEECCCCCHHHHHHHHHHH---HHHHHHHCCCEEE
T ss_conf 388899788414---6779999--99987521467868-8889999625864133788778999---9999997899999
Q ss_pred EEEECCC---------------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5872455---------------655477777777777888899999999999999996489987
Q T0547 267 KAINLGG---------------GLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEP 315 (611)
Q Consensus 267 ~~LDIGG---------------GlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P 315 (611)
.....-| ||++|.+... .. . ...|-.=+.++..+.+++.|
T Consensus 127 G~~~~~~y~f~~s~~~~~~~f~gL~lD~dn~~-~~------t--~~ri~~W~~~l~~e~~~~lp 181 (182)
T 2wc1_A 127 GRWPAKGYGFEDSLAVVEGEFLGLALDQDNQA-AL------T--PERLKGWLSLIAADFGLVLP 181 (182)
T ss_dssp CCEECTTSCCSCCTTEETTEESSEEECTTTCG-GG------H--HHHHHHHHHHTHHHHTCCCC
T ss_pred EEECCCCCCCCCCHHCCCCCEEECCCCCCCCH-HH------H--HHHHHHHHHHHHHHHCCCCC
T ss_conf 41448996611011310891586202676752-23------5--99999999999999767589
No 37
>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=37.99 E-value=15 Score=14.69 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC----CCCCCCHHHHHHHHHHHH
Q ss_conf 7889899999999998668987347888633----887678899999999999
Q T0547 204 FGLTSTELIEAVNLLKENKLLEQFTMIHFHL----GSQITEIHPLKKALNEAG 252 (611)
Q Consensus 204 FGl~~~ei~~~i~~l~~~~~l~~L~gLHfHI----GSQI~di~~~~~ai~ea~ 252 (611)
-=++++|+.+....+.++|. ..+|+|+ |.+..|+..|++.+.+..
T Consensus 29 vP~Tp~Eia~~A~~c~~AGA----s~vH~HvRd~~G~~sld~~~y~e~i~~ir 77 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGA----AIAHCHVRNDDGTPSSDPDRFARLTEGLH 77 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTC----CEEEECEECTTSCEECCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC----CEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98998999999999998188----58998741899497778899999999999
No 38
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=37.61 E-value=15 Score=14.65 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=47.9
Q ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 687278888889999999855799858987479999999999999999999708898723787453
Q T0547 21 VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLK 86 (611)
Q Consensus 21 l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK 86 (611)
+.|+|...-||.+|.+-.++.|.|.--|-.+.+.|++||.+-.++|.+.. ..++.-.+.|-..
T Consensus 4 lviRpv~~~Dl~~L~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sf~~~~---~~~~~~~YlFVLE 66 (342)
T 1yle_A 4 LVMRPAQAADLPQVQRLAADSPVGVTSLPDDAERLRDKILASEASFAAEV---SYNGEESYFFVLE 66 (342)
T ss_dssp EEEEECCGGGHHHHHHHHHHSCTTCTTSCSCHHHHHHHHHHHHHHHHCTT---CCCSCCEEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCEEEEEE
T ss_conf 99964743229999999997499864599999999999999999861667---8888853899999
No 39
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemical rescue, hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=37.00 E-value=15 Score=14.58 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECC
Q ss_conf 999999999986689-87347888633887678899999999999999999971799-40587245
Q T0547 209 TELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK-NLKAINLG 272 (611)
Q Consensus 209 ~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~-~l~~LDIG 272 (611)
..+.+.++.+++.+. ++ -.|+++|++.+.++++.++..++ ++.+.|.+ .+..+||.
T Consensus 183 ~~~~~~v~~l~~~g~~iD-giG~Q~H~~~~~~~~~~i~~~l~-------~~~~~Glpi~ITElDv~ 240 (436)
T 2d1z_A 183 QGVYNMVRDFKQRGVPID-CVGFQSHFNSGSPYNSNFRTTLQ-------NFAALGVDVAITELDIQ 240 (436)
T ss_dssp HHHHHHHHHHHHHTCCCC-EEEECCEEBTTBCCCTTHHHHHH-------HHHTTTCEEEEEEEEET
T ss_pred HHHHHHHHHHHHCCCCCC-CCCEEEEECCCCCCHHHHHHHHH-------HHHHCCCEEEEEEEECC
T ss_conf 999999999997899614-02203552799999899999999-------99865990699762467
No 40
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=34.48 E-value=17 Score=14.30 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCEEEEECCCCCC
Q ss_conf 8999999999986689-8734788863388767889999999999999999997179---9405872455655
Q T0547 208 STELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA---KNLKAINLGGGLA 276 (611)
Q Consensus 208 ~~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~---~~l~~LDIGGGlg 276 (611)
...+.+.++.+++.+. ++ -.|+++|++.+-.++..++.++++.. ..|. ..+..+||+..-+
T Consensus 191 ~~~~~~lv~~l~~~gvpID-gIG~Q~H~~~~~~~~~~i~~~l~~~~-------~lg~~l~v~ITElDV~~~~~ 255 (348)
T 1w32_A 191 TTALVNLVQRLLNNGVPID-GVGFQMHVMNDYPSIANIRQAMQKIV-------ALSPTLKIKITELDVRLNNP 255 (348)
T ss_dssp HHHHHHHHHHHHHTTCCCC-EEEECCEEESSSSCHHHHHHHHHHHH-------TTCSSCEEEEEEEEEESCCT
T ss_pred HHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCHHHHHHHHHHHH-------HHCCCCCEEEEEEEECCCCC
T ss_conf 8999999999997899612-10246310578999999999999999-------72899716998877626776
No 41
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=34.01 E-value=17 Score=14.25 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 68899999999999999973696678
Q T0547 374 ALEYLHDSIDHLESILTLFDLGYVDL 399 (611)
Q Consensus 374 ~~E~~~da~~~~~~~~~~f~~G~l~L 399 (611)
..|.|..=..|+.-+..+|..|.+++
T Consensus 255 ~~~~~r~w~~YL~~c~~~F~~g~l~v 280 (287)
T 1kpg_A 255 SEEVYERYMKYLTGCAEMFRIGYIDV 280 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89999999999999999997799639
No 42
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=33.58 E-value=13 Score=15.08 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCCCEEEEECCCCCCCCCCC
Q ss_conf 886510487336437466301
Q T0547 470 EEPTRSASIWDITCDSDGEIS 490 (611)
Q Consensus 470 e~P~~~~~l~DiTCDSDG~i~ 490 (611)
..+.+..++.||+||..|.+.
T Consensus 280 ~~mk~gsVIvDVA~D~GG~iE 300 (401)
T 1x13_A 280 DSMKAGSVIVDLAAQNGGNCE 300 (401)
T ss_dssp HTSCTTCEEEETTGGGTCSBT
T ss_pred HHHCCCCEEEEECCCCCCCCC
T ss_conf 100268569981367899836
No 43
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=33.30 E-value=18 Score=14.17 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHCCCCCCEEEECHHH-----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--------------ECC
Q ss_conf 88899999998557998589874799-----99999999999999999708898723787453--------------378
Q T0547 29 PAIIDIVKELRDDGYKGPLLLRFPHL-----IQKQIENIYGNFNKARKEFGYKGGFNAVYPLK--------------VNQ 89 (611)
Q Consensus 29 ~~l~dlv~~l~~~~~~tPllvrf~di-----l~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK--------------aN~ 89 (611)
+...+.++.++++|+..=+.-.-+.+ ....+...+......+...+.......+-+.. .=|
T Consensus 53 pgv~e~L~~L~~~g~~i~ivTn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rKP 132 (211)
T 2gmw_A 53 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKP 132 (211)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCBTTCSSGGGBSCCSSSTT
T ss_pred CCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 57999999999769908985163054420458999988888888875202124454177242343665533455567899
Q ss_pred CHHHHHHHHH-HCCCCCCEEEEC-CHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 7899999998-466678516622-88999999964899881787889899999999854235710489866889999999
Q T0547 90 YPGFVKNLVK-LGKDYNYGLEAG-SKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAII 167 (611)
Q Consensus 90 ~~~Vv~~i~~-~G~~~~~GlEv~-Sk~EL~~ala~g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~ 167 (611)
+|..+..+++ ++....=-+=+| |...+.+|.++|.+..-+++.|+-..+..+.. ...+++++.||..++
T Consensus 133 ~P~~i~~al~~l~id~~~~i~VGDs~~Di~~A~~AGi~t~~lv~~g~~~~~~~~~~---------ad~iv~~l~el~~~l 203 (211)
T 2gmw_A 133 HPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENA---------ADWVLNSLADLPQAI 203 (211)
T ss_dssp SCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHH---------CSEEESCGGGHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHCC---------CCEEECCHHHHHHHH
T ss_conf 87156788886286723373516999999999987998379966898876013127---------988989999999999
Q ss_pred H
Q ss_conf 9
Q T0547 168 D 168 (611)
Q Consensus 168 ~ 168 (611)
+
T Consensus 204 k 204 (211)
T 2gmw_A 204 K 204 (211)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 44
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134}
Probab=30.72 E-value=19 Score=13.87 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE-----CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 4788989999999999866898734788863-----38876788999999999999999999717994058724556554
Q T0547 203 KFGLTSTELIEAVNLLKENKLLEQFTMIHFH-----LGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAV 277 (611)
Q Consensus 203 KFGl~~~ei~~~i~~l~~~~~l~~L~gLHfH-----IGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV 277 (611)
-.=++++|+.+....+.++|. . .+|+| -|++..|...|++.+.. +++. +++ -.+++-.|.+.
T Consensus 42 ~lPvTpeEIa~~A~~c~~AGA--s--ivHlHvRd~~dG~~s~D~~~y~e~i~~-------IR~~-~pd-~ii~~Ttg~~~ 108 (316)
T 3c6c_A 42 SMPITPAQIADACVEAAKAGA--S--VAHIHVRDPKTGGGSRDPVLFKEVVDR-------VRSS-GTD-IVLNLTCGLGA 108 (316)
T ss_dssp TCCCSHHHHHHHHHHHHHHTC--S--EEEECEECTTTCCEECCHHHHHHHHHH-------HHTT-TCC-CEEEEECCCSE
T ss_pred CCCCCHHHHHHHHHHHHHHCC--C--EEEEEECCCCCCCCCCCHHHHHHHHHH-------HHHH-CCC-EEEEECCCCCC
T ss_conf 998998999999999998286--4--899875578889847899999999999-------9976-798-28983466445
Q ss_pred CCC
Q ss_conf 777
Q T0547 278 EYS 280 (611)
Q Consensus 278 ~Y~ 280 (611)
.|.
T Consensus 109 ~~~ 111 (316)
T 3c6c_A 109 FLL 111 (316)
T ss_dssp EEC
T ss_pred CCC
T ss_conf 567
No 45
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=30.50 E-value=14 Score=14.95 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999999999999997---088987237874533787899999998466678516622
Q T0547 53 HLIQKQIENIYGNFNKARKE---FGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAG 111 (611)
Q Consensus 53 dil~~ri~~l~~aF~~A~~~---~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~ 111 (611)
..++.+...+...|..++.. -+|+-.--++||.=||-+..+++..+..|.+| |+...
T Consensus 103 ~~v~~~f~~~~~~f~~~~~~F~~~~ye~~lLp~YaqaAnlhL~LLrD~i~~g~~W--g~~~~ 162 (589)
T 2qkg_A 103 RDVRNRFEILDSLFTQYMPSFRVTGYEVPLLSVYAQAANLHLLLLKDASIFGEEW--GFSTT 162 (589)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHTTTT--TCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH
T ss_conf 9999999999999999889847688400038899999999999999999876642--99979
No 46
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA0888, degradation of proteins and peptides, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=29.60 E-value=8.8 Score=16.45 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=7.1
Q ss_pred HHHHHHHHHHCC
Q ss_conf 653303244223
Q T0547 439 RYLVNFSLFQSM 450 (611)
Q Consensus 439 ~y~~NfS~Fqsl 450 (611)
+|+||+..|+||
T Consensus 136 ~ylCN~~~Y~sL 147 (192)
T 2ebj_A 136 SYLCNQAFYLSL 147 (192)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 233369999999
No 47
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=28.93 E-value=5.6 Score=17.89 Aligned_cols=17 Identities=6% Similarity=0.258 Sum_probs=8.7
Q ss_pred EEEEECCCCCCCHHHHH
Q ss_conf 88863388767889999
Q T0547 229 MIHFHLGSQITEIHPLK 245 (611)
Q Consensus 229 gLHfHIGSQI~di~~~~ 245 (611)
-+...-|..+.|--.|+
T Consensus 129 ~iS~daG~YlCN~~yY~ 145 (206)
T 1iu8_A 129 VLSYTAGTYLCNFAMYL 145 (206)
T ss_dssp EEESCCCSSHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHH
T ss_conf 98589865413699999
No 48
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=28.26 E-value=16 Score=14.39 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHCCCCCCCEEE-----CC-C--CC---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 99964899881787-----88-9--89---99999998542357104898668899999999999846986226888850
Q T0547 118 LAMAYNNEGAPITV-----NG-F--KD---RELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRL 186 (611)
Q Consensus 118 ~ala~g~~~~~Ii~-----nG-~--Kd---~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l 186 (611)
+|..++.|.++|.. -| + |. .+.+-.++.+++.|+-|.++.+-.+++.. ...+|..-.|++.
T Consensus 246 iA~~lglp~~~V~V~~~~~GGgFG~K~~~~~~~~~a~~aa~~~grPVkl~~sRee~~~~--------~~~r~~~~~~~~~ 317 (803)
T 1ffv_B 246 VSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENIST--------TAFARDYHMDGEL 317 (803)
T ss_dssp HHHHHCCCGGGEEEECCCCSCCTTTTSSCCHHHHHHHHHHHHHTSCEEEECCHHHHHHH--------SCEECCEEEEEEE
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHC--------CCCCCCEEEEEEE
T ss_conf 33331578724899956635768888765369999999998518986998426453330--------4666756998766
Q ss_pred CCCCCC
Q ss_conf 788776
Q T0547 187 HSAGVG 192 (611)
Q Consensus 187 ~~~~~g 192 (611)
+.+..|
T Consensus 318 g~~~dG 323 (803)
T 1ffv_B 318 AATPDG 323 (803)
T ss_dssp EECTTC
T ss_pred EECCCC
T ss_conf 888889
No 49
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=28.17 E-value=15 Score=14.59 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=43.8
Q ss_pred EEEEEECCHHHHHHCCCCCCC-CCCCEEEEEECCCCEEEEEECCC--------------CCHHHHHHHHCC------CHH
Q ss_conf 788860206999747751567-89857999988996288751378--------------878999987285------888
Q T0547 510 FLGFFLVGAYQEVLGMKHNLF-THPTEAIISINEKGYEVEGIIEA--------------QSILDTLEDLDY------DIH 568 (611)
Q Consensus 510 ~lG~FlvGAYQeiLGd~HNLf-g~t~~v~v~~~~~g~~i~~~~~g--------------dt~~~vL~~v~y------~~~ 568 (611)
-+.+--=|++|=.++.+...- =+.+.+.|-+|.+||-+.+.++. -....+-+.++. +++
T Consensus 436 vv~i~GDGsf~m~~~eL~Ta~~~~l~i~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 515 (556)
T 3hww_A 436 TLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQ 515 (556)
T ss_dssp EEEEEEHHHHHHTGGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEECCSSHH
T ss_pred EEEEECCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHH
T ss_conf 69997183142147899999984969589999799962652310135544520378999999999986798499968999
Q ss_pred HHHHHHHHHHHHC------CCCCHHHHHHHHHHHHH
Q ss_conf 9999999999852------68898899999999999
Q T0547 569 AIMDILNERISNS------KLVNDKQKKHILGELYL 598 (611)
Q Consensus 569 ~l~~~~~~~~~~~------~~~~~~e~~~~l~~~~~ 598 (611)
+|.+.+++-.+.. -.+++++....++.+-.
T Consensus 516 el~~al~~a~~~~~p~lIeV~vd~~~~~~~~~~~~~ 551 (556)
T 3hww_A 516 ELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLA 551 (556)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 999999999858980999998480777999999999
No 50
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: CE6; 1.90A {Clostridium thermocellum}
Probab=28.08 E-value=21 Score=13.55 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=10.0
Q ss_pred HHHHHHHHCCCCCCEEEEEEEC-CCCCC
Q ss_conf 9999998668987347888633-88767
Q T0547 213 EAVNLLKENKLLEQFTMIHFHL-GSQIT 239 (611)
Q Consensus 213 ~~i~~l~~~~~l~~L~gLHfHI-GSQI~ 239 (611)
++++-++++++ .++| |.-| +||.+
T Consensus 250 ~~v~~a~~~g~--~vrG-H~LvW~~~~P 274 (540)
T 2w5f_A 250 SILNFCAQNNI--AVRG-HTLVWHSQTP 274 (540)
T ss_dssp HHHHHHHHTTC--EEEE-EEEECSSSCC
T ss_pred HHHHHHHHCCC--EEEE-EEEECCCCCC
T ss_conf 99999998799--7999-9786787585
No 51
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), hydrolase inhibitor/hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=27.76 E-value=21 Score=13.51 Aligned_cols=37 Identities=8% Similarity=-0.154 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 9999999998668987347888633887678899999
Q T0547 210 ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKK 246 (611)
Q Consensus 210 ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ 246 (611)
...+.++.+++.+.--.-.|+++|.+.+-.+...++.
T Consensus 185 ~~~~~v~~l~~~g~~idgIG~Q~H~~~~~~~~~~~~~ 221 (303)
T 1ta3_B 185 AMASYVKKWLAEGVPIDGIGSQAHYSSSHWSSTEAAG 221 (303)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEECTTCCCGGGHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 8999999999689986536565304778999899999
No 52
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; HET: MSE GOL; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: d.356.1.1
Probab=27.62 E-value=22 Score=13.50 Aligned_cols=130 Identities=9% Similarity=0.029 Sum_probs=57.7
Q ss_pred ECCEEEECCCCCC-CHHHHHHHHH--HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 0674687278888-8899999998--557998589874799999999999999999997088987237874533787899
Q T0547 17 KNGKVCINYEKKP-AIIDIVKELR--DDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF 93 (611)
Q Consensus 17 ~~G~l~v~p~~~~-~l~dlv~~l~--~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~V 93 (611)
+.|++.+...... .|...+++.. .-|+..|++||..+-++.-+.. .-|..+ +-......+|....=+...+
T Consensus 44 qSGNvvf~s~~~~~~l~~~ie~~l~~~fG~~~~v~vrs~~el~~~i~~--nPf~~~----~~~~~~~v~f~~~~~~~~~~ 117 (183)
T 2hiy_A 44 NSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSLLSLEDFEAELEN--LPAWWS----RDLARKDFLFYTEGLDVDQV 117 (183)
T ss_dssp TTTEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEEEEHHHHHHHHTT--CCGGGG----SCCSEEEEEEECTTCCHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH--CCCCCC----CCCCEEEEEEECCCCCHHHH
T ss_conf 137589747999999999999999987599877899259999999997--899633----57772489997587760778
Q ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE---C--CC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999846667851662288999999964899881787---8--89-899999999854235710489866889999999
Q T0547 94 VKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV---N--GF-KDRELINIGFIAAEMGHNITLTIEGLNELEAII 167 (611)
Q Consensus 94 v~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~---n--G~-Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~ 167 (611)
...+.... .+-|.. ...+..|++ . |+ |++ +..++...++|.. .+.=|..-+.+|.
T Consensus 118 ~~~~~~~~----~~~E~~-----------~~~~~~iy~~~~~~~~~~ks~--l~~~~~~~~l~~~--~T~RNwnTv~kL~ 178 (183)
T 2hiy_A 118 IATVESLE----LKDEVL-----------YFGKLGIFWGKFSEESYSKTA--YHKYLLKVPFYRH--ITIRNAKTFDKIG 178 (183)
T ss_dssp HHHHHTSC----CCSEEE-----------EECSSEEEEEECCTTTGGGSH--HHHHGGGSTTGGG--EEEEEHHHHHHHH
T ss_pred HHHHHCCC----CCCEEE-----------EECCCEEEEECCCCCCCCCCH--HHHHHHHHCCCCC--CCCCHHHHHHHHH
T ss_conf 88874046----898289-----------985989999516888754216--6787753003776--1422299999999
Q ss_pred HHHH
Q ss_conf 9999
Q T0547 168 DIAK 171 (611)
Q Consensus 168 ~ia~ 171 (611)
++++
T Consensus 179 ~m~~ 182 (183)
T 2hiy_A 179 QMLK 182 (183)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 9973
No 53
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=25.75 E-value=23 Score=13.26 Aligned_cols=12 Identities=8% Similarity=-0.103 Sum_probs=4.0
Q ss_pred EEEEECCCCCCC
Q ss_conf 888633887678
Q T0547 229 MIHFHLGSQITE 240 (611)
Q Consensus 229 gLHfHIGSQI~d 240 (611)
|+|.|++.+-.+
T Consensus 222 G~Q~H~~~~~~~ 233 (356)
T 2uwf_A 222 GHQSHIQIGWPS 233 (356)
T ss_dssp EECCEEESSCSC
T ss_pred EEEECCCCCCCC
T ss_conf 776225467779
No 54
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=24.78 E-value=24 Score=13.13 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=18.9
Q ss_pred ECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 07567775041145522102235666654556544517899999
Q T0547 320 ESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELY 363 (611)
Q Consensus 320 EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~ 363 (611)
-|.|-.-+.=+-=++.+..-.+....+.-. .+|.+.+++.
T Consensus 249 l~~r~F~~~LA~r~F~~tqyIR~~~~~~Yt----pEPDi~Hel~ 288 (429)
T 1phz_A 249 LSSRDFLGGLAFRVFHCTQYIRHGSKPMYT----PEPDICHELL 288 (429)
T ss_dssp CCHHHHHHHHTTTEEEECCCCCCTTCTTCC----SSCCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCCHHHHH
T ss_conf 788999999753723135333266545557----8996144554
No 55
>2qw5_A Xylose isomerase-like TIM barrel; YP_324688.1, putative sugar phosphate isomerase/epimerase, structural genomics; 1.78A {Anabaena variabilis atcc 29413}
Probab=24.60 E-value=24 Score=13.11 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 8899999998557998
Q T0547 30 AIIDIVKELRDDGYKG 45 (611)
Q Consensus 30 ~l~dlv~~l~~~~~~t 45 (611)
++.+.++.+++-||..
T Consensus 32 ~l~~~l~~~~~~Gfdg 47 (335)
T 2qw5_A 32 IVVAHIKKLQRFGYSG 47 (335)
T ss_dssp HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 3999999999749898
No 56
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis}
Probab=24.31 E-value=15 Score=14.65 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=7.4
Q ss_pred EEEECCCCCCCHHHHH
Q ss_conf 8863388767889999
Q T0547 230 IHFHLGSQITEIHPLK 245 (611)
Q Consensus 230 LHfHIGSQI~di~~~~ 245 (611)
+.-.-|..+.|--.|+
T Consensus 134 iS~daG~YlCN~~yY~ 149 (215)
T 3lac_A 134 VSQTAGTFVCNHLFYG 149 (215)
T ss_dssp EESCCCSSHHHHHHHH
T ss_pred EECCCCHHHHHHHHHH
T ss_conf 8278511065599999
No 57
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=24.25 E-value=17 Score=14.29 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73074346889999999999999997369667899989999999999999985123456046788888875565330324
Q T0547 367 KSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSL 446 (611)
Q Consensus 367 ~~~~~~~~~E~~~da~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~ 446 (611)
.++++.|..| |+-..+++..+.|.--.+------+.++|...-.+++...+.+.+.-.-.++.-+.|-+.-|+=-|+
T Consensus 305 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~p~~~~~~~~~e~~~~~~~~~~~~ 381 (396)
T 1fkm_A 305 SNMTPNNAVE---DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL 381 (396)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC---CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0357542000---0003332000011278999999989999962649999999865998785076899999988999999
Q ss_pred HHCCHHHHCC
Q ss_conf 4223101000
Q T0547 447 FQSMPDFWGL 456 (611)
Q Consensus 447 FqslPD~Wai 456 (611)
|.+.|-+|--
T Consensus 382 ~~~~~~~~~~ 391 (396)
T 1fkm_A 382 YKDATSHWLH 391 (396)
T ss_dssp HC--------
T ss_pred HHCCCHHHHH
T ss_conf 8516066654
No 58
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=23.97 E-value=25 Score=13.03 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=8.1
Q ss_pred CCHHHHHCCCEEEEEEEECCCC
Q ss_conf 7567775041145522102235
Q T0547 321 SGRFVAANHAVLIAPVLELFSQ 342 (611)
Q Consensus 321 pGRaivA~~~vLv~~Vi~v~~~ 342 (611)
|.|-.-+.=+-=++.+..-.+.
T Consensus 148 ~~r~F~~~LA~RvFp~TqyIRh 169 (325)
T 1j8u_A 148 SSRDFLGGLAFRVFHCTQYIRH 169 (325)
T ss_dssp CHHHHHHHHHTTEEEECCCCCC
T ss_pred CHHHHHHHHHCCCCCCCCEECC
T ss_conf 9899999985781144123268
No 59
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyneuropathy, transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=23.58 E-value=25 Score=12.97 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=44.5
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE--ECC
Q ss_conf 546788865104873364374663014677765567788878960788860206999747751567898579999--889
Q T0547 465 LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS--INE 542 (611)
Q Consensus 465 l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~--~~~ 542 (611)
|.|+++. ...-.|..-..|.||+++.+.... .+. ++ .|-| .|.+|+|=.-+|-- . | -..|.|+ +.+
T Consensus 32 L~~~~~~-~~~~~i~~~~Td~dGRi~~~~~~~----~~~-~G-~YeL-~F~~~~Yf~~~~~~-~-f--~p~v~I~F~v~d 99 (127)
T 2h4e_A 32 VFRKAAD-DTWEPFASGKTSESGELHGLTTEE----EFV-EG-IYKV-EIDTKSYWKALGIS-P-F--HEHAEVVFTAND 99 (127)
T ss_dssp EEEECTT-SCEEEEEEEECCTTSEECCSCCTT----TCC-SE-EEEE-EECHHHHHHHTTCC-C-S--EEEEEEEEEEST
T ss_pred EEEECCC-CCEEEEEEEECCCCCCCCCCCCCC----CCC-CE-EEEE-EEEHHHHHHHCCCC-C-C--CCEEEEEEEECC
T ss_conf 9998899-977899999818998826766745----567-76-7999-99868989864999-7-8--741789999438
Q ss_pred -CC--EEEEEEC
Q ss_conf -96--2887513
Q T0547 543 -KG--YEVEGII 551 (611)
Q Consensus 543 -~g--~~i~~~~ 551 (611)
++ |.|--++
T Consensus 100 ~~~~hYHiPlLl 111 (127)
T 2h4e_A 100 SGPRRYTIAALL 111 (127)
T ss_dssp TSCCEEEEEEEE
T ss_pred CCCCCEEEEEEE
T ss_conf 999825574796
No 60
>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=23.42 E-value=25 Score=12.95 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC--
Q ss_conf 96078886020699974775156789857999988-996288751378878999987285888999999999985268--
Q T0547 507 ENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISIN-EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKL-- 583 (611)
Q Consensus 507 e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~-~~g~~i~~~~~gdt~~~vL~~v~y~~~~l~~~~~~~~~~~~~-- 583 (611)
.++...++-.|..|--+-..--+.|. ||++. ||+.++..-..-. +-.+|+++..+-+.+.++
T Consensus 227 ~~~~wsv~g~G~~~~~l~~~Ai~lGG----hVRVGlEDnl~~~~G~~A~-----------sNaelV~~~v~ia~~~gr~i 291 (311)
T 3e49_A 227 ADYVWSILGAGRHQIPLASIGAAQGA----NVRVGLEDSLWIAPGELAE-----------TNAAQVRKIRQVIEGLSLEV 291 (311)
T ss_dssp GGEEEEEEECGGGHHHHHHHHHTTTC----EEEECTTTCSEEETTEECS-----------CHHHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----CCEECCCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCC
T ss_conf 99748995067404899999998099----7187677551069999997-----------89999999999999859998
Q ss_pred CCHHHHHHHHH
Q ss_conf 89889999999
Q T0547 584 VNDKQKKHILG 594 (611)
Q Consensus 584 ~~~~e~~~~l~ 594 (611)
-|++|.+++|.
T Consensus 292 At~~eaR~iLg 302 (311)
T 3e49_A 292 ASPAEARTMLG 302 (311)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHHC
T ss_conf 99999999948
No 61
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=23.00 E-value=26 Score=12.90 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999997088
Q T0547 63 YGNFNKARKEFGY 75 (611)
Q Consensus 63 ~~aF~~A~~~~~Y 75 (611)
..||+++++++++
T Consensus 25 ~~a~~~~~~~~g~ 37 (225)
T 3d6j_A 25 VTCFRSVLERHGY 37 (225)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998699
No 62
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A
Probab=22.84 E-value=26 Score=12.87 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 764220466656478898999999999986689873478
Q T0547 191 VGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTM 229 (611)
Q Consensus 191 ~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~g 229 (611)
.-||...-....+|-. +.+.++++.++++++ .+.|
T Consensus 213 ~mKW~~iep~~G~~nf--~~aD~~v~~a~~ngi--~vrG 247 (530)
T 1us2_A 213 IMKMSYMQPTEGNFNF--TNADAFVDWATENNM--TVHG 247 (530)
T ss_dssp TTSHHHHCSBTTBCCC--HHHHHHHHHHHHTTC--EEEE
T ss_pred CCCHHHHCCCCCCCCC--HHHHHHHHHHHHCCC--EEEE
T ss_conf 5773775787982680--899999999998889--7999
No 63
>3e02_A Uncharacterized protein DUF849; YP_555544.1, protein of unknown function (DUF849), structural genomics; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=22.60 E-value=26 Score=12.84 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 896078886020699974775156789857999988-996288751378878999987285888999999999985268-
Q T0547 506 KENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISIN-EKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKL- 583 (611)
Q Consensus 506 ~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~-~~g~~i~~~~~gdt~~~vL~~v~y~~~~l~~~~~~~~~~~~~- 583 (611)
.++....++-.|..|=-+-..--+.|. ||++. ||..++..-..-. +-.+|+++..+-+...|+
T Consensus 226 ~~~~~w~~~g~g~~~~~~~~~Ai~lGG----hvRVGlED~l~~~~G~~A~-----------~NaeLV~~~~~ia~~~gr~ 290 (311)
T 3e02_A 226 GQDYYLSVLAAGRHQMPFVTMSAILGG----NVRVGLEDSLYSGKGQLAT-----------SNAEQVRKIRRIIEELSLD 290 (311)
T ss_dssp TTSEEEEEEECGGGHHHHHHHHHHTTC----EEEESTTTCSEEETTEECS-----------CHHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCC----CEEEECCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCC
T ss_conf 877558861565656999999998099----7189447551079999994-----------8999999999999986999
Q ss_pred -CCHHHHHHHHH
Q ss_conf -89889999999
Q T0547 584 -VNDKQKKHILG 594 (611)
Q Consensus 584 -~~~~e~~~~l~ 594 (611)
-+++|.+++|.
T Consensus 291 iAt~~eaR~~L~ 302 (311)
T 3e02_A 291 IATPDEARAMLK 302 (311)
T ss_dssp BCCHHHHHHHHT
T ss_pred CCCHHHHHHHHC
T ss_conf 899999999858
No 64
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=22.46 E-value=26 Score=12.94 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHCCCCCCCEEE-----CC-C--CC---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 9964899881787-----88-9--89---999999985423571048986688999999999998469862268888507
Q T0547 119 AMAYNNEGAPITV-----NG-F--KD---RELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLH 187 (611)
Q Consensus 119 ala~g~~~~~Ii~-----nG-~--Kd---~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~ 187 (611)
|..+|.|.++|.. -| + |. .+.+..|+.+.+.|+-|.++.+-.+++.. ...+|..-.|++.+
T Consensus 250 A~~lgl~~~~V~V~~~~~GGgFG~K~~~~~~~~~aa~aa~~~grPVkl~~sRee~~~~--------~~~R~~~~~~~~~g 321 (809)
T 1n62_B 250 SLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLST--------TSFARDYHMTTELA 321 (809)
T ss_dssp HHHHCCCGGGEEEECCBCSCCTTTTSSCCHHHHHHHHHHHHHSSCEEEECCHHHHHHH--------SCEECCEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHCC--------CCCCCCCCCHHHCC
T ss_conf 3103688531799981246655665534578889999999869997992354673045--------78878741210000
Q ss_pred CCCCC
Q ss_conf 88776
Q T0547 188 SAGVG 192 (611)
Q Consensus 188 ~~~~g 192 (611)
.+..|
T Consensus 322 ~~~dG 326 (809)
T 1n62_B 322 ATKDG 326 (809)
T ss_dssp ECTTC
T ss_pred CCCCC
T ss_conf 12588
No 65
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure initiative, structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.43 E-value=27 Score=12.82 Aligned_cols=31 Identities=16% Similarity=-0.043 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHHC
Q ss_conf 9999999999964899877887075677750
Q T0547 298 DVVFILKNIAEQKKDLEPDIFIESGRFVAAN 328 (611)
Q Consensus 298 ~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~ 328 (611)
.+...+.+.|.+.++|.|++.+-+.+.+.|.
T Consensus 27 ~L~~~v~~la~~~gi~~P~v~v~~~~~~NAf 57 (107)
T 3cqb_A 27 WLLETVGRQAQQAGIGMPTVAIYDSADINAF 57 (107)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECCSSEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCEE
T ss_conf 9999999999976989984999818986389
No 66
>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} SCOP: c.56.4.1
Probab=21.72 E-value=14 Score=14.89 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=6.5
Q ss_pred EEEECCCCCCCHHHH
Q ss_conf 886338876788999
Q T0547 230 IHFHLGSQITEIHPL 244 (611)
Q Consensus 230 LHfHIGSQI~di~~~ 244 (611)
+.-.-|+.+.|--.|
T Consensus 135 ~S~daG~YlCN~~yY 149 (215)
T 1aug_A 135 VSYTAGTFVCNHLFY 149 (215)
T ss_dssp CBSCCCSSHHHHHHH
T ss_pred ECCCCCCCCHHHHHH
T ss_conf 736733230368999
No 67
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, cytoplasm, hydrolase, protease, thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp}
Probab=21.60 E-value=9.1 Score=16.33 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=6.8
Q ss_pred HHHHHHHHHHCC
Q ss_conf 653303244223
Q T0547 439 RYLVNFSLFQSM 450 (611)
Q Consensus 439 ~y~~NfS~Fqsl 450 (611)
+|+||+..|+||
T Consensus 141 ~ylCN~~yY~sL 152 (215)
T 3giu_A 141 TFVCNHTLYHLG 152 (215)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 437779999999
No 68
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3lm7_A
Probab=21.38 E-value=28 Score=12.67 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=50.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 85078877642204666564788989999999999866898734788863388767889999999999999999997179
Q T0547 184 VRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA 263 (611)
Q Consensus 184 v~l~~~~~g~~~~Tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~ 263 (611)
|.|.-...--++.||-..|+.-=..-.+..++..+++.+.- ++ -|.-=-.....+-++.-.+.| .+.|
T Consensus 120 vsPTG~~G~VkIsTGp~Ss~~~~~iV~vetAiaml~dmG~~-Si---Kffpm~Gl~~leE~~avAkac-------a~~g- 187 (249)
T 3m0z_A 120 VSPTGTPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGS-SI---KYFPMGGLKHRAEFEAVAKAC-------AAHD- 187 (249)
T ss_dssp EBCCSSTTEEECCCSTTGGGSSCCEEEHHHHHHHHHHTTCC-EE---EECCCTTTTTHHHHHHHHHHH-------HHTT-
T ss_pred ECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EE---EEEECCCCCCHHHHHHHHHHH-------HHCC-
T ss_conf 65788651699456766556887634099999999974998-16---675067734199999999999-------9769-
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEE
Q ss_conf 940587245565547777777777788889999999999999999648998--7788
Q T0547 264 KNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE--PDIF 318 (611)
Q Consensus 264 ~~l~~LDIGGGlgV~Y~~~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~--P~Ii 318 (611)
+ +|-=-||...+ .| ..+-++|-+.|+|. |+|.
T Consensus 188 --~-~lEPTGGIdl~---------------N~-----~eI~~i~ldaGv~kviPHIY 221 (249)
T 3m0z_A 188 --F-WLEPTGGIDLE---------------NY-----SEILKIALDAGVSKIIPHIY 221 (249)
T ss_dssp --C-EEEEBSSCCTT---------------TH-----HHHHHHHHHHTCSCBCCBCC
T ss_pred --C-EECCCCCCCHH---------------HH-----HHHHHHHHHCCCCEECCCCC
T ss_conf --1-67667985788---------------89-----99999999839983215200
No 69
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=21.23 E-value=28 Score=12.65 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999999998668987347888633887678899999999999999999971799405
Q T0547 211 LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLK 267 (611)
Q Consensus 211 i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~ 267 (611)
+.++.+.+..++. .+..++.+.+--..+......+++...+......++|++.+.
T Consensus 48 ~~~l~~~~~~~gl--~~~s~~~~~~~~~~~~~~~~~~~~~~k~~i~~a~~lG~~~i~ 102 (278)
T 1i60_A 48 LDDLAEYFQTHHI--KPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVV 102 (278)
T ss_dssp HHHHHHHHHTSSC--EEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHCCC--EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999998199--389996777778999899999999999999999982939899
No 70
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=20.84 E-value=15 Score=14.67 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=5.7
Q ss_pred EEEECCCCCCCHHHH
Q ss_conf 886338876788999
Q T0547 230 IHFHLGSQITEIHPL 244 (611)
Q Consensus 230 LHfHIGSQI~di~~~ 244 (611)
+.-.-|..+.|--.|
T Consensus 133 ~S~daG~YlCN~~~Y 147 (208)
T 1x10_A 133 ISNSAGLYLSNYVMY 147 (208)
T ss_dssp EESCCCSSHHHHHHH
T ss_pred ECCCHHHHHHHHHHH
T ss_conf 768667634458999
No 71
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=20.43 E-value=29 Score=12.53 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
Q ss_conf 7999999999999999999970---8898723787453378789999999846667851662288999999964899881
Q T0547 52 PHLIQKQIENIYGNFNKARKEF---GYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAP 128 (611)
Q Consensus 52 ~dil~~ri~~l~~aF~~A~~~~---~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~ 128 (611)
.+.++.+...+...|..++..+ +|+...-++||.=||-+..+++..+..|.+| |+.......+..-+..
T Consensus 103 ~~~v~~~f~~~~~~f~~~~~~F~~~~ye~~lLp~YaqaAnlhL~LLrD~i~~g~~W--g~~~~~~~~~~~~~~~------ 174 (584)
T 1dlc_A 103 QGRIRELFSQAESHFRNSMPSFAISGYEVLFLTTYAQAANTHLFLLKDAQIYGEEW--GYEKEDIAEFYKRQLK------ 174 (584)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHTTTT--TCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH------
T ss_conf 99999999999999999889866588421038999999999999999999866661--9988899999999999------
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 78788989999999985423571
Q T0547 129 ITVNGFKDRELINIGFIAAEMGH 151 (611)
Q Consensus 129 Ii~nG~Kd~e~I~lAl~a~~lG~ 151 (611)
+..+|...+....+.|.
T Consensus 175 ------~i~~Y~~~c~~~Y~~Gl 191 (584)
T 1dlc_A 175 ------LTQEYTDHCVKWYNVGL 191 (584)
T ss_dssp ------HHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHH
T ss_conf ------99999999999999999
Done!