Query         T0547 BR53, unknown, 611 residues
Match_columns 611
No_of_seqs    261 out of 901
Neff          5.4 
Searched_HMMs 15564
Date          Fri May 21 18:08:39 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0547.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0547.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1hkva2 c.1.6.1 (A:46-310) Dia 100.0       0       0  387.5  26.6  256   51-330     1-265 (265)
  2 d1twia2 c.1.6.1 (A:50-313) Dia 100.0       0       0  368.8  28.5  260   51-329     1-264 (264)
  3 d1knwa2 c.1.6.1 (A:32-278) Dia 100.0 2.8E-42       0  335.9  24.0  241   51-330     1-247 (247)
  4 d7odca2 c.1.6.1 (A:44-283) Euk 100.0 5.8E-41 4.2E-45  326.0  27.5  239   51-329     1-240 (240)
  5 d1f3ta2 c.1.6.1 (A:44-283) Euk 100.0 6.8E-41 4.2E-45  325.5  27.7  238   52-329     2-240 (240)
  6 d1f3ta1 b.49.2.3 (A:14-43,A:28  98.7 5.9E-09 3.8E-13   84.5   4.6  147  303-539     9-156 (169)
  7 d1rcqa2 c.1.6.1 (A:8-233) Alan  98.7 5.5E-07 3.5E-11   69.6  13.8  169   51-260     2-175 (226)
  8 d1hkva1 b.49.2.3 (A:2-45,A:311  98.6 2.2E-09 1.4E-13   87.7   0.5  150  306-561    23-177 (181)
  9 d1vfsa2 c.1.6.1 (A:13-249) Ala  98.5 2.3E-05 1.5E-09   57.4  17.6  178   52-263     2-187 (237)
 10 d7odca1 b.49.2.3 (A:2-43,A:284  98.4 8.4E-08 5.4E-12   75.8   3.1   94  439-539    74-168 (177)
 11 d1knwa1 b.49.2.3 (A:2-31,A:279  98.4 8.5E-07 5.5E-11   68.2   8.0   88  468-562    79-169 (174)
 12 d1twia1 b.49.2.3 (A:15-49,A:31  97.9 2.6E-06 1.7E-10   64.5   2.8   91  459-562    72-162 (170)
 13 d1rcqa2 c.1.6.1 (A:8-233) Alan  97.6  0.0039 2.5E-07   40.6  16.2  149   51-236     2-154 (226)
 14 d1bd0a2 c.1.6.1 (A:12-244) Ala  97.6  0.0039 2.5E-07   40.5  16.9  165   51-249     2-172 (233)
 15 d1ct5a_ c.1.6.2 (A:) "Hypothet  62.8     4.4 0.00029   17.5  23.0  196   55-271    13-219 (244)
 16 d1cg2a2 d.58.19.1 (A:214-326)   49.3     6.7 0.00043   16.1   2.8   94  227-323    10-111 (113)
 17 d1w32a_ c.1.8.3 (A:) Xylanase   47.8     7.5 0.00048   15.8   7.5   60  208-275   190-253 (346)
 18 d1tf3a3 g.37.1.1 (A:71-101) Tr  43.2     3.4 0.00022   18.4   0.5   16  480-495     2-17  (31)
 19 d1ylea1 d.108.1.8 (A:1-338) Ar  41.4     9.3 0.00059   15.1   4.1   63   21-86      2-64  (338)
 20 d2o57a1 c.66.1.18 (A:16-297) P  40.3     9.6 0.00062   14.9   3.5   56  124-183    66-122 (282)
 21 d1dlca3 f.1.3.1 (A:61-289) del  39.1     5.9 0.00038   16.5   1.3   10  386-395   181-190 (229)
 22 d1i60a_ c.1.15.4 (A:) Hypothet  38.3      10 0.00066   14.7  13.1   92  211-321    48-143 (278)
 23 d1kpga_ c.66.1.18 (A:) CmaA1 {  33.3      12 0.00078   14.2   2.7   55  124-182    61-116 (285)
 24 d1r85a_ c.1.8.3 (A:) Xylanase   33.0      12 0.00079   14.1   6.2   33  210-243   205-238 (371)
 25 d1vlba4 d.133.1.1 (A:311-907)   32.8      11 0.00068   14.6   1.7   68  118-193    89-166 (597)
 26 d1iu8a_ c.56.4.1 (A:) Pyrrolid  30.6     3.5 0.00023   18.2  -1.0   10   88-97     17-26  (206)
 27 d1n82a_ c.1.8.3 (A:) Xylanase   29.6      14 0.00089   13.7   5.3   36  210-245   188-223 (330)
 28 d1yhta1 c.1.8.6 (A:16-359) Dis  29.0      14 0.00091   13.7   2.1   29  158-193    77-105 (344)
 29 d1f86a_ b.3.4.1 (A:) Transthyr  27.7      15 0.00096   13.5   3.0   75  465-551    23-102 (115)
 30 d1rrma_ e.22.1.2 (A:) Lactalde  25.9      16   0.001   13.3   6.7   80   14-102     4-84  (385)
 31 d1us3a2 c.1.8.3 (A:243-606) Xy  24.8      17  0.0011   13.1   5.3   61  208-275   201-262 (364)
 32 d2amxa1 c.1.9.1 (A:20-376) Ade  24.3      17  0.0011   13.1   7.9   36  560-596   321-356 (357)
 33 d1v0la_ c.1.8.3 (A:) Xylanase   23.9      17  0.0011   13.0   3.6   10  213-222    65-74  (302)
 34 d2v4jb2 d.58.36.2 (B:2-135) Di  23.5      16   0.001   13.3   1.3   59  206-277    72-131 (134)
 35 d1ybha3 c.36.1.9 (A:460-667) A  22.4      18  0.0012   12.8   7.2   15  156-170   155-169 (208)
 36 d1mp9a1 d.129.1.1 (A:5-96) TAT  22.3      18  0.0012   12.8   2.8   22  123-144    59-80  (92)
 37 d1ciya3 f.1.3.1 (A:33-255) del  21.9       7 0.00045   16.0  -0.8   12  210-221    43-54  (223)
 38 d2ji7a3 c.36.1.9 (A:370-552) O  21.6      19  0.0012   12.7   4.5   15  238-252   150-164 (183)
 39 d1auga_ c.56.4.1 (A:) Pyrrolid  21.6     9.9 0.00064   14.8  -0.1   13  231-243   136-148 (210)
 40 d1iofa_ c.56.4.1 (A:) Pyrrolid  21.5      10 0.00064   14.8  -0.1   12   86-97     15-26  (208)
 41 d1ja1a2 c.23.5.2 (A:63-239) NA  21.0      20  0.0013   12.6   1.4   81  207-307    83-169 (177)
 42 d1b6ra1 b.84.2.1 (A:277-355) N  20.9      20  0.0013   12.6   1.9   42  123-172    20-61  (79)
 43 d1kpia_ c.66.1.18 (A:) CmaA2 {  20.9      20  0.0013   12.6   3.0   59  122-183    57-116 (291)
 44 d1qnaa1 d.129.1.1 (A:17-115) T  20.8      20  0.0013   12.6   1.4   21  124-144    58-78  (99)
 45 d1ur1a_ c.1.8.3 (A:) Xylanase   20.5      20  0.0013   12.5   5.3   58  208-273   183-242 (350)

No 1  
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=0  Score=387.46  Aligned_cols=256  Identities=20%  Similarity=0.286  Sum_probs=224.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEE
Q ss_conf             47999999999999999999970889872378745337878999999984666785166228899999996489988178
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPIT  130 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii  130 (611)
                      +++.||+|++++++||.         +.+++.||+|||+++.|++.+.+.|    +|+||+|.+||.+|+++|+++++|+
T Consensus         1 D~~~lr~~~~~~~~af~---------~~~~i~YA~KaN~~~~vl~~l~~~G----~g~dvaS~~El~~al~~G~~~~~Ii   67 (265)
T d1hkva2           1 DEDDFRSRCRETAAAFG---------SGANVHYAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASFPPERIT   67 (265)
T ss_dssp             EHHHHHHHHHHHHHHTT---------SGGGBEEEGGGSCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHHHHHHCC---------CCCEEEEEECCCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHCCCCHHHHE
T ss_conf             97999999999998569---------9986998863389999999999749----9759867515999998289989923


Q ss_pred             ECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCH
Q ss_conf             788-989999999985423571048986688999999999998469862268888507887764-220466656478898
Q T0547           131 VNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTS  208 (611)
Q Consensus       131 ~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~  208 (611)
                      |+| +|++++|++|+..   |.. .+++||++||++|.+++++ .++.++|++|+||++...++ |..+|+..||||++.
T Consensus        68 ~~gp~K~~~~l~~Al~~---gv~-~i~vDs~~El~~i~~~~~~-~~~~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~~  142 (265)
T d1hkva2          68 LHGNNKSVSELTAAVKA---GVG-HIVVDSMTEIERLDAIAGE-AGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSV  142 (265)
T ss_dssp             ECCSSCCHHHHHHHHHH---TCC-CEEECSHHHHHHHHHHHHH-HTCCEEEEEEEECSEEEEETEEEECSSCCSSSSEES
T ss_pred             ECCCCCHHHHHHHHHHC---CCC-CCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCH
T ss_conf             35521003567889863---855-1114542789999988652-033423122333101244333110255334456523


Q ss_pred             HH--HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-----HCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99--9999999986689873478886338876788999999999999999999-----7179940587245565547777
Q T0547           209 TE--LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR-----KMGAKNLKAINLGGGLAVEYSQ  281 (611)
Q Consensus       209 ~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~-----~~g~~~l~~LDIGGGlgV~Y~~  281 (611)
                      ++  .+..+.++...+.+ .+.|||||+|||+.++..|..+++++.+++.++.     +.| .++++||+||||||+|..
T Consensus       143 ~~~~~~~~~~~~~~~~~l-~~~GlH~HvGSq~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g-~~l~~ldiGGG~~v~y~~  220 (265)
T d1hkva2         143 ASGAAMAAVRRVFATDHL-RLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKT-AQIATVDLGGGLGISYLP  220 (265)
T ss_dssp             TTSHHHHHHHHHHHCSSE-EEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCCEEECCCCBCCCSST
T ss_pred             HHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCC
T ss_conf             466789999999861673-266655541102344588999999999887767887788608-886446545877866788


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCC
Q ss_conf             7777777888899999999999999996489987788707567775041
Q T0547           282 FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHA  330 (611)
Q Consensus       282 ~~~~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~  330 (611)
                      ++.+.    ++++|+..+...+++.|...+.+.|+|++||||||||+++
T Consensus       221 ~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~l~~EPGR~lvg~~t  265 (265)
T d1hkva2         221 SDDPP----PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGT  265 (265)
T ss_dssp             TCCCC----CHHHHHHHHHHHHHHHHHTTTCCCCEEEBCCSHHHHSTTE
T ss_pred             CCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCC
T ss_conf             88899----9999999999999999986299997899918525325899


No 2  
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=0  Score=368.79  Aligned_cols=260  Identities=26%  Similarity=0.396  Sum_probs=227.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEE
Q ss_conf             47999999999999999999970889872378745337878999999984666785166228899999996489988178
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPIT  130 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii  130 (611)
                      .++.||.+++++.+||+++..+.+  .+++++||+|||+++.|++.+.+.|    +|+||+|++||.+|+++|+++.+|+
T Consensus         1 s~~~i~~n~~~~~~af~~~~~~~g--~~~~i~YAvKaN~~~~vl~~l~~~G----~g~Dv~S~~El~~al~~G~~~~~I~   74 (264)
T d1twia2           1 SEEQIKINYNRYIEAFKRWEEETG--KEFIVAYAYKANANLAITRLLAKLG----CGADVVSGGELYIAKLSNVPSKKIV   74 (264)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHS--CCEEEEEEGGGCCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCHHHHHHHHHCC----CCEEEECCCHHHHHHHCCCCCCCCC
T ss_conf             979999999999999999888519--9669998845689899999999829----9805625148988764179743344


Q ss_pred             ECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCH
Q ss_conf             788-989999999985423571048986688999999999998469862268888507887764-220466656478898
Q T0547           131 VNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKFGLTS  208 (611)
Q Consensus       131 ~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKFGl~~  208 (611)
                      ||| +|+.++|+.|+.   .|.+ .+++||.+||+++.+++.+ .+..+++++|++|.....++ +..|++..||||++.
T Consensus        75 ~~gp~k~~~~i~~a~~---~gv~-~~~~ds~~el~~i~~~a~~-~~~~~~v~~Ri~~~~~~~~~~~~~~~~~~skfG~~~  149 (264)
T d1twia2          75 FNGNCKTKEEIIMGIE---ANIR-AFNVDSISELILINETAKE-LGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDV  149 (264)
T ss_dssp             ECCSSCCHHHHHHHHH---TTCS-EEEECSHHHHHHHHHHHHH-HTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEES
T ss_pred             CCCCHHHHHHHHHHHC---CEEE-EEECCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             6785467888877432---3121-0000105788888888987-099832110224577744454301455334566627


Q ss_pred             HH--HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99--9999999986689873478886338876788999999999999999999717994058724556554777777777
Q T0547           209 TE--LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEK  286 (611)
Q Consensus       209 ~e--i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~  286 (611)
                      ++  ...+..+..+...+ .+.|+|||+|||+.++..|..+++++.+++.++++.|. ++++||+||||||+|...+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~l-~~~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~ldiGGGf~v~y~~~~~~~  227 (264)
T d1twia2         150 ESGIAMKAIKMALEMEYV-NVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI-EIEDVNLGGGLGIPYYKDKQIP  227 (264)
T ss_dssp             TTSHHHHHHHHHHHCSSE-EEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTC-CCSEEECCCCBCCCSSSSSCCC
T ss_pred             HHHHHHHHHHHHHHHCCC-CCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCCC
T ss_conf             777889999999873134-43440232010234426689999999999999998399-8657761377465678888999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCC
Q ss_conf             7788889999999999999999648998778870756777504
Q T0547           287 SRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANH  329 (611)
Q Consensus       287 s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~  329 (611)
                          ++++|+..|...+++.+  .+.+.|+|++||||||||.+
T Consensus       228 ----~~~~~~~~i~~~l~~~~--~~~~~~~l~~EPGR~lva~A  264 (264)
T d1twia2         228 ----TQKDLADAIINTMLKYK--DKVEMPNLILEPGRSLVATA  264 (264)
T ss_dssp             ----CHHHHHHHHHHHHHTTT--TTSCCCEEEECCSHHHHGGG
T ss_pred             ----CHHHHHHHHHHHHHHHC--CCCCCCEEEECCCHHHEECC
T ss_conf             ----99999999999999850--56899769990868982369


No 3  
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=2.8e-42  Score=335.91  Aligned_cols=241  Identities=23%  Similarity=0.303  Sum_probs=199.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC----
Q ss_conf             4799999999999999999997088987237874533787899999998466678516622889999999648998----
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEG----  126 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~----  126 (611)
                      +.++||+|++.+++ |            ..+.||+|||+++.|++.+.+.|    +|+||+|.+||.+|+++|+++    
T Consensus         1 D~~~ir~~~~~l~~-~------------~~v~YA~KaN~~~~vl~~l~~~G----~g~dv~S~~El~~al~~G~~~~~~~   63 (247)
T d1knwa2           1 DAQIIRRQIAALKQ-F------------DVVRFAQKACSNIHILRLMREQG----VKVDSVSLGEIERALAAGYNPQTHP   63 (247)
T ss_dssp             EHHHHHHHHHTTTT-S------------SEEEEEGGGCCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTCCTTTCT
T ss_pred             CHHHHHHHHHHHCC-C------------CEEEEEECCCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHHCCCCCCCH
T ss_conf             97999999997037-8------------98999710189899999999849----9789829999999998077755675


Q ss_pred             CCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCC
Q ss_conf             8178788-989999999985423571048986688999999999998469862268888507887764-22046665647
Q T0547           127 APITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI-WAKSGGINSKF  204 (611)
Q Consensus       127 ~~Ii~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~-~~~Tgg~~SKF  204 (611)
                      ++|+|+| +|+.++++.|+.   .|  +.+++||++||+++.+++     ..+++++|++|.....++ ...|++..|||
T Consensus        64 ~~Ii~~g~~k~~~~l~~a~~---~~--~~i~~ds~~el~~l~~~~-----~~~~i~lRinp~~~~~~~~~~~~~~~~sKF  133 (247)
T d1knwa2          64 DDIVFTADVIDQATLERVSE---LQ--IPVNAGSVDMLDQLGQVS-----PGHRVWLRVNPGFGHGHSQKTNTGGENSKH  133 (247)
T ss_dssp             TSEEEEESCCCHHHHHHHHH---HT--CCEEESSHHHHHHHHHHS-----TTCEEEEEEECSCCSSCTTSCCSSSTTCCC
T ss_pred             HHEEECCCCCHHHHHHHHHH---HH--HHHCHHHHHHHHHHHHHC-----CCCHHHEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             45253277310468999998---76--330101467899998642-----311232023236444455433332222455


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             88989999999999866898734788863388767889999999999999999997179940587245565547777777
Q T0547           205 GLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN  284 (611)
Q Consensus       205 Gl~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~  284 (611)
                      |++.+++.++++.++..+.  ++.|||||+|||+.+...    .+.+..++..+.+.|. ++++||+||||||+|...+.
T Consensus       134 G~~~~~~~~~~~~~~~~~~--~l~GlH~HigSq~~~~~~----~~~~~~~~~~~~~~g~-~~~~ldiGGGf~v~y~~~~~  206 (247)
T d1knwa2         134 GIWYTDLPAALDVIQRHHL--QLVGIHMHIGSGVDYAHL----EQVCGAMVRQVIEFGQ-DLQAISAGGGLSVPYQQGEE  206 (247)
T ss_dssp             SEEGGGHHHHHHHHHHTTC--EEEEEECCCCCTTCHHHH----HHHHHHHHHHHHHHTC-CCSEEECCCCCCCCCSTTCC
T ss_pred             CCCHHHHHHHHHHHHHCCC--CEEEEHHCCCCCCHHHHH----HHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCC
T ss_conf             5440222456566552155--032202124765204678----9999998888863057-75188756851434777789


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCC
Q ss_conf             7777888899999999999999996489987788707567775041
Q T0547           285 EKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHA  330 (611)
Q Consensus       285 ~~s~ny~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~~  330 (611)
                      +    +++++|++.+...++++++..+ ..|+|++|||||+||++|
T Consensus       207 ~----~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~EPGR~lva~aG  247 (247)
T d1knwa2         207 A----VDTEHYYGLWNAAREQIARHLG-HPVKLEIEPGRFLVAQSG  247 (247)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHT-SCCEEEECCSHHHHGGGE
T ss_pred             C----CCHHHHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHCCC
T ss_conf             9----9999999999999999998559-998899938788772589


No 4  
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=5.8e-41  Score=326.03  Aligned_cols=239  Identities=20%  Similarity=0.264  Sum_probs=200.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEE
Q ss_conf             47999999999999999999970889872378745337878999999984666785166228899999996489988178
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPIT  130 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii  130 (611)
                      +.|.|..|++++.++|+          ..+++||+|||+++.|++.+.+.|    +|+||+|.+||.+|+++|+++++|+
T Consensus         1 dl~~i~~~~~~~~~~~p----------~v~~~YA~KaN~~~~il~~l~~~G----~g~dv~S~~El~~a~~aG~~~~~Iv   66 (240)
T d7odca2           1 DLGDILKKHLRWLKALP----------RVTPFYAVKCNDSRAIVSTLAAIG----TGFDCASKTEIQLVQGLGVPAERVI   66 (240)
T ss_dssp             EHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHHHHHHHHCC----CCEEEECCHHHHHHHHCCCCCCCEE
T ss_conf             97899999999998689----------987988852389899999999839----9817624268999984499943037


Q ss_pred             ECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             788-9899999999854235710489866889999999999984698622688885078877642204666564788989
Q T0547           131 VNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTST  209 (611)
Q Consensus       131 ~nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~  209 (611)
                      |+| +|++++|+.|+.   .|.. ++++||.+|++++.+.     ....++.+|+++...     ..+++..+|||++.+
T Consensus        67 ~~g~~K~~~~l~~a~~---~g~~-~~~~ds~~el~~i~~~-----~~~~~v~~ri~~~~~-----~~~~~~~~kfG~~~~  132 (240)
T d7odca2          67 YANPCKQVSQIKYAAS---NGVQ-MMTFDSEIELMKVARA-----HPKAKLVLRIATDDS-----KAVCRLSVKFGATLK  132 (240)
T ss_dssp             ECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHH-----CTTCEEEEEBCC----------------CCCBCHH
T ss_pred             ECCCCCCHHHHHHHHH---HHCC-CCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHH
T ss_conf             4277520678999988---6333-4221027788999874-----665665422344555-----443676766534389


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986689873478886338876788999999999999999999717994058724556554777777777778
Q T0547           210 ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRN  289 (611)
Q Consensus       210 ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~n  289 (611)
                      ++..++++++..+.  .+.|||||+|||+.+...|.++++.+..++..+++.|. ++++||+|||||++|+..       
T Consensus       133 ~~~~~~~~~~~~~l--~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ldiGGG~~~~~~~~-------  202 (240)
T d7odca2         133 TSRLLLERAKELNI--DVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF-SMHLLDIGGGFPGSEDTK-------  202 (240)
T ss_dssp             HHHHHHHHHHHTTC--EEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTC-CCCEEECCCCCCCSSSSS-------
T ss_pred             HHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCC-------
T ss_conf             99999998640694--68761100010343288899999998888899998299-805998488768788899-------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCC
Q ss_conf             8889999999999999999648998778870756777504
Q T0547           290 YTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANH  329 (611)
Q Consensus       290 y~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~  329 (611)
                      .++++|+..+...+++.+...  +.|+|++||||||||++
T Consensus       203 ~~~~~~~~~i~~~l~~~~~~~--~~~~l~~EPGR~lvA~A  240 (240)
T d7odca2         203 LKFEEITSVINPALDKYFPSD--SGVRIIAEPGRYYVASA  240 (240)
T ss_dssp             SCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCHHHHCCC
T ss_conf             999999999999999862648--99889996867985079


No 5  
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]}
Probab=100.00  E-value=6.8e-41  Score=325.50  Aligned_cols=238  Identities=20%  Similarity=0.277  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE
Q ss_conf             79999999999999999999708898723787453378789999999846667851662288999999964899881787
Q T0547            52 PHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV  131 (611)
Q Consensus        52 ~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~  131 (611)
                      -|.++.|++++.++|+          +.+++||+|||+++.|++.+.+.|    +|+||+|.+||.+|+++|+++++|+|
T Consensus         2 l~~i~~~~~~~~~~~p----------~v~~~YA~KaN~~~~il~~l~~~g----~g~dv~S~~El~~al~~G~~~~~Iif   67 (240)
T d1f3ta2           2 LGDIVRKHETWKKCLP----------RVTPFYAVKCNDDWRVLGTLAALG----TGFDCASNTEIQRVRGIGVPPEKIIY   67 (240)
T ss_dssp             HHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHHHHHHHHHHCC----------CCEEEEEECCCCCHHHHHHHHHCC----CCEEECCCHHHHHHHHCCCCCCCEEE
T ss_conf             7899999999998789----------987988750179999999999869----98684251368999983899642465


Q ss_pred             CC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             88-98999999998542357104898668899999999999846986226888850788776422046665647889899
Q T0547           132 NG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTE  210 (611)
Q Consensus       132 nG-~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~~e  210 (611)
                      +| +|++++|+.|+.   .|.+ ++++||++|+++|.+.+     .+.++.+|+++...     ..+++..+|||++.++
T Consensus        68 ~g~~k~~~ei~~a~~---~g~~-~~~~ds~~el~~i~~~~-----~~~~~~~ri~~~~~-----~~~~~~~~kFGi~~~~  133 (240)
T d1f3ta2          68 ANPCKQISHIRYARD---SGVD-VMTFDCVDELEKVAKTH-----PKAKMVLRISTDDS-----LARCRLSVKFGAKVED  133 (240)
T ss_dssp             CCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHC-----TTCEEEEEBCC---------------CCSCBCHHH
T ss_pred             CCCCCHHHHHHHHHH---HCCC-CEEEEEHHHHHHHHHHC-----CCCCCCCCCCCCCC-----CCCCCCCCCCHHHHHH
T ss_conf             065310577999987---1245-32442101255555533-----55564422123222-----2455665520133789


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999866898734788863388767889999999999999999997179940587245565547777777777788
Q T0547           211 LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNY  290 (611)
Q Consensus       211 i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~ny  290 (611)
                      +.++++.++..+.  ++.|||||+|||+.+...|.++++.+..++..+++.|. .+++||+|||||++|+..   .    
T Consensus       134 ~~~~~~~~~~~~~--~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~ldiGGG~~~~~~~~---~----  203 (240)
T d1f3ta2         134 CRFILEQAKKLNI--DVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGGFPGTRDAP---L----  203 (240)
T ss_dssp             HHHHHHHHHHTTC--EEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCCCSSTTSS---S----
T ss_pred             HHHHHHHHHCCCC--CEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEECCCCCCCCCCCC---C----
T ss_conf             9999998733366--45666542222026889999999988999999998299-743550267657788899---9----


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCC
Q ss_conf             889999999999999999648998778870756777504
Q T0547           291 TLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANH  329 (611)
Q Consensus       291 ~l~eya~~Iv~~i~~~c~~~~vp~P~Ii~EpGRaivA~~  329 (611)
                      ++++|+..+...+++.+.. + ..++|++|||||+||.+
T Consensus       204 ~~~~~~~~i~~~l~~~~~~-~-~~~~l~~EPGR~lva~A  240 (240)
T d1f3ta2         204 KFEEIAGVINNALEKHFPP-D-LKLTIVAEPGRYYVASA  240 (240)
T ss_dssp             CHHHHHHHHHHHHHHHSCC-C-TTCEEEECCSHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHCCC-C-CCCEEEEECCHHHHCCC
T ss_conf             9999999999999986476-8-99789993287985179


No 6  
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Probab=98.72  E-value=5.9e-09  Score=84.47  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=98.0

Q ss_pred             HHHHHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             99999964899877887075677750411455221022356666545565445178999999997307434688999999
Q T0547           303 LKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSI  382 (611)
Q Consensus       303 i~~~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da~  382 (611)
                      -+.+|.+.++   +++.||||+.||  ..|+++|++.+........... +..                           
T Consensus         9 ~~~~~~~~~~---~~~~epg~ffvA--fTLvt~VI~kr~~~~~~~~~~~-~~~---------------------------   55 (169)
T d1f3ta1           9 RDALCKKISM---NTCDEGDPFFVA--FTLAVNVIAKKVTPGVQTDVGA-HAE---------------------------   55 (169)
T ss_dssp             HHHHHHHCC---------CCCEEEE--EEEEEEEEEEEEC----------------------------------------
T ss_pred             HHHHHHHCCC---EEEECCCCEEEE--EEEEEEEEEEEECCCCCCCCCC-CCC---------------------------
T ss_conf             7788875596---599759882799--9999999999871475222234-445---------------------------


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
Q ss_conf             99999999973696678999899999999999999851234560467888888755653303244223101000663120
Q T0547           383 DHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPI  462 (611)
Q Consensus       383 ~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi  462 (611)
                                                                        .....-.||+|=+++.|+-..+-=.+.++.
T Consensus        56 --------------------------------------------------~~~~~~~yyindG~ygsf~~~l~d~~~~~~   85 (169)
T d1f3ta1          56 --------------------------------------------------SNAQSFMYYVNDGVYGSFNCILYDHAVVRP   85 (169)
T ss_dssp             -----------------------------------------------------CCEEEEESCCTTTGGGHHHHSCCCCCC
T ss_pred             --------------------------------------------------CCCCCEEEEECCCCCCCHHHHHHCCCCEEE
T ss_conf             --------------------------------------------------787416999688787898587615531446


Q ss_pred             CCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             1354-6788865104873364374663014677765567788878960788860206999747751567898579999
Q T0547           463 MPLD-RLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS  539 (611)
Q Consensus       463 ~Pl~-rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~  539 (611)
                      .|.. ...++|....++++-||||-..+...    ..|+++.. |+  +|.|..+|||.-.+...+|=|..+..+.|.
T Consensus        86 ~~~~~~~~~~~~~~~~v~GptCds~D~i~~~----~~lPel~v-GD--~L~~~n~GAYt~~~ss~FNGf~~p~v~yv~  156 (169)
T d1f3ta1          86 LPQREPIPNEKLYPSSVWGPTCDGLDQIVER----YYLPEMQV-GE--WLLFEDMGAYTVVGTSSFNGFQSPTIYYVV  156 (169)
T ss_dssp             EECSCCCTTCCEEEEEEECSSSCTTCEEEEE----EEEECCCT-TC--EEEECSCCSSSGGGCCCGGGCCCCEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEECCCCCCCEEEEE----EECCCCCC-CC--EEEEECCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             6302678888637899982267764545024----20551257-98--899937884513226778898898089997


No 7  
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} SCOP: d1vfsa2 d1bd0a2
Probab=98.68  E-value=5.5e-07  Score=69.60  Aligned_cols=169  Identities=14%  Similarity=0.134  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC
Q ss_conf             479999999999999999999708898723787453378----7899999998466678516622889999999648998
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEG  126 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~  126 (611)
                      +.+.|+++++.+++.-          | -+.+..+|+|.    ...|.+.+ +.|..   ++-|++-.|-......|.+.
T Consensus         2 dl~al~~Ni~~~r~~~----------~-~~~~aVvKanAYGhG~~~ia~~l-~~g~~---~f~Va~~~EA~~lr~~g~~~   66 (226)
T d1rcqa2           2 DLQALRHNYRLAREAT----------G-ARALAVIKADAYGHGAVRCAEAL-AAEAD---GFAVACIEEGLELREAGIRQ   66 (226)
T ss_dssp             EHHHHHHHHHHHHHHH----------C-SEEEEECHHHHHTTCHHHHHHHH-TTTCS---EEEESSHHHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHCC----------C-CCEEEEECCCCCCCCHHHHHHHH-HHHCC---EEEEECHHHHHHHHHHHHHC
T ss_conf             8789999999998626----------9-96899860475566888999999-96362---53344188999998753100


Q ss_pred             CCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             81787889899999999854235710489866889999999999984698622688885078877642204666564788
Q T0547           127 APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGL  206 (611)
Q Consensus       127 ~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl  206 (611)
                      ..++++|..+.++++.++.     +++.++|+|.+.++.+.+.+   .+.++.  +-++.++         |  -.++|+
T Consensus        67 ~Ilvl~g~~~~~~~~~~~~-----~~i~~~i~s~~~l~~~~~~~---~~~~~~--vhlkiDt---------G--m~R~G~  125 (226)
T d1rcqa2          67 PILLLEGFFEASELELIVA-----HDFWCVVHCAWQLEAIERAS---LARPLN--VWLKMDS---------G--MHRVGF  125 (226)
T ss_dssp             CEEETTCCSSGGGHHHHHH-----TTEEEEECSHHHHHHHHHCC---CSSCEE--EEEEBCS---------S--SCSSSB
T ss_pred             CEEEECCCCCHHHHHHHHH-----CCCCEEECCHHHHHHHHHHH---CCCCCC--EEEEECC---------C--CCCCCC
T ss_conf             0035647989889999996-----07723354889999999862---388730--4776236---------6--761441


Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9899999999998668987347888633887-67889999999999999999997
Q T0547           207 TSTELIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRK  260 (611)
Q Consensus       207 ~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~  260 (611)
                      +.+|+.++++.++..+.+ .+.|+..|..+- ..+....    ++-.+.|.++.+
T Consensus       126 ~~~e~~~~~~~i~~~~~l-~~~Gi~tHfa~ad~~~~~~~----~~Q~~~F~~~~~  175 (226)
T d1rcqa2         126 FPEDFRAAHERLRASGKV-AKIVMMSHFSRADELDCPRT----EEQLAAFSAASQ  175 (226)
T ss_dssp             CHHHHHHHHHHHHHTTCE-EEEEEECCCSSTTCTTCTHH----HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCHHHHHH----HHHHHHHHHHHH
T ss_conf             288899999988633674-13001122056500221799----999999999997


No 8  
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.64  E-value=2.2e-09  Score=87.65  Aligned_cols=150  Identities=13%  Similarity=0.172  Sum_probs=104.6

Q ss_pred             HHHHCCCCCCEEEEECCHHHHHCCCEEEEEEEECCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             999648998778870756777504114552210223566----6654556544517899999999730743468899999
Q T0547           306 IAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEY----AENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDS  381 (611)
Q Consensus       306 ~c~~~~vp~P~Ii~EpGRaivA~~~vLv~~Vi~v~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~da  381 (611)
                      .| ..|+|.|.|.+||||+||  +++.++.|-.+|.-..    .......+...+.+++-..                  
T Consensus        23 ~~-~~~~~~~~~~~epgr~~~--~~~~ly~vg~vK~v~~k~~~~r~fv~vDgGm~d~iRPaL------------------   81 (181)
T d1hkva1          23 VC-IAGIPLTQLAQEYGTPLF--VIITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTAL------------------   81 (181)
T ss_dssp             EE-ETTEEHHHHHHHHCSSEE--EEEEEEECCEEEEEECSSSCEEEEEECSCCTTTCCHHHH------------------
T ss_pred             HH-HCCCCCHHHHCCCCCCEE--EEEEEEECCEEEEEECCCCCCCEEEEECCCCCCCCCCCC------------------
T ss_conf             87-518964054237896235--478999710289994168886679996577455644210------------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
Q ss_conf             99999999997369667899989999999999999985123456046788888875565330324422310100066312
Q T0547           382 IDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFP  461 (611)
Q Consensus       382 ~~~~~~~~~~f~~G~l~L~~ra~~E~l~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fp  461 (611)
                                                                                |                +..++
T Consensus        82 ----------------------------------------------------------Y----------------~A~h~   87 (181)
T d1hkva1          82 ----------------------------------------------------------Y----------------GAQYD   87 (181)
T ss_dssp             ----------------------------------------------------------H----------------CCCCC
T ss_pred             ----------------------------------------------------------C----------------CCCCC
T ss_conf             ----------------------------------------------------------4----------------76353


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf             013546788865104873364374663014677-7655677888789607888602069997477515678985799998
Q T0547           462 IMPLDRLDEEPTRSASIWDITCDSDGEISYSKD-KPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISI  540 (611)
Q Consensus       462 i~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~-~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~  540 (611)
                      |.++.+.++.+.....+++-+|+|-   |.+.. ..||- ++. +|.  +|.|+.+|||--.|...+|.|+.+-+|-|. 
T Consensus        88 i~~~~~~~~~~~~~~~VvGp~Cesg---Dil~~d~~LP~-~l~-~GD--lLai~~~GAYg~sMsSnyN~~prPaeV~V~-  159 (181)
T d1hkva1          88 VRLVSRVSDAPPVPARLVGKHCESG---DIIVRDTWVPD-DIR-PGD--LVAVAATGAYCYSLSSRYNMVGRPAVVAVH-  159 (181)
T ss_dssp             EEECSSCCCSCEEEEEEECSSSSTT---CEEEEEEEEET-TCC-TTC--EEEESCCSSSTGGGCBCGGGCCCCEEEEEE-
T ss_pred             CCCCCCCCCCCCEEEEEEECCCCCC---CEEECCCCCCC-CCC-CCC--EEEEECCCCCHHHHCCCCCCCCCCCEEEEE-
T ss_conf             2134464346752455651477655---57411456753-489-969--999843411124535332389998189998-


Q ss_pred             CCCCEEEEEECCCCCHHHHHH
Q ss_conf             899628875137887899998
Q T0547           541 NEKGYEVEGIIEAQSILDTLE  561 (611)
Q Consensus       541 ~~~g~~i~~~~~gdt~~~vL~  561 (611)
                       + | ...-+.+.+|.+|+++
T Consensus       160 -d-g-~~~lIrrREt~eDll~  177 (181)
T d1hkva1         160 -A-G-NARLVLRRETVDDLLS  177 (181)
T ss_dssp             -T-T-EEEEEECCCCHHHHHT
T ss_pred             -C-C-EEEEEECCCCHHHHHH
T ss_conf             -9-9-4999985799999998


No 9  
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=98.48  E-value=2.3e-05  Score=57.41  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCC
Q ss_conf             79999999999999999999708898723787453378----78999999984666785166228899999996489988
Q T0547            52 PHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGA  127 (611)
Q Consensus        52 ~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~  127 (611)
                      -+-|+++++.+++.-          ++-+.+..||+|-    ...|.+.+.+.|..   +|-|++-.|-...+.+|....
T Consensus         2 L~al~~N~~~l~~~~----------~~~~i~aVVKAnAYGhG~~~ia~~l~~~g~~---~f~Va~~~EA~~lR~~g~~~~   68 (237)
T d1vfsa2           2 LDAVRANVRALRARA----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAA---WLGTATPEEALELRAAGIQGR   68 (237)
T ss_dssp             HHHHHHHHHHHHTTS----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHHHHHHHC----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHCCCCC
T ss_conf             799999999999768----------9982999981315747799999999986999---898740034889987046897


Q ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             17878898999999998542357104898668899999999999846986226888850788776422046665647889
Q T0547           128 PITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLT  207 (611)
Q Consensus       128 ~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~  207 (611)
                      .+++++.-. +.++.++.     +++.++|.+.+.++.+.+.++.. +....+-|.|  ++         |-  +++|+.
T Consensus        69 Il~l~~~~~-~~~~~~~~-----~~i~~~i~s~~~l~~l~~~a~~~-~~~~~vhLki--DT---------GM--~RlG~~  128 (237)
T d1vfsa2          69 IMCWLWTPG-GPWREAIE-----TDIDVSVSGMWALDEVRAAARAA-GRTARIQLKA--DT---------GL--GRNGCQ  128 (237)
T ss_dssp             EEECCCCTT-CCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHH-TSCEEEEEEB--CS---------SC--CSSSBC
T ss_pred             EEECCCCCH-HHHHHHHH-----HCCCCEECCHHHHHHHHHHHHHC-CCCEEEEEEE--CC---------CC--CCCCCC
T ss_conf             200258872-78999997-----23452434198899999999965-9972699985--58---------87--777888


Q ss_pred             HHHHHHHHHH---HHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8999999999---98668987347888633887-67889999999999999999997179
Q T0547           208 STELIEAVNL---LKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALNEAGNIYTELRKMGA  263 (611)
Q Consensus       208 ~~ei~~~i~~---l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~ea~~ly~eL~~~g~  263 (611)
                      .+|+.++++.   ++..+.+ .+.|+-.|..+- ..+.......++....+...+++.|.
T Consensus       129 ~~e~~~l~~~~~~~~~~~~l-~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~  187 (237)
T d1vfsa2         129 PADWAELVGAAVAAQAEGTV-QVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGV  187 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTSE-EEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             35789999998865306863-265565120245311226689999999999999997189


No 10 
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.39  E-value=8.4e-08  Score=75.75  Aligned_cols=94  Identities=23%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHCCHHHHCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             65330324422310100066312013-54678886510487336437466301467776556778887896078886020
Q T0547           439 RYLVNFSLFQSMPDFWGLEQNFPIMP-LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVG  517 (611)
Q Consensus       439 ~y~~NfS~FqslPD~Wai~Q~Fpi~P-l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvG  517 (611)
                      .|++|=+++.|+-+.|-=.+.++.++ ..+-.+.+..+.+|++-||||-..|..    ..+|+.+.. | + +|.|..+|
T Consensus        74 ~yyindGvygsf~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~GptCds~D~i~~----~~~lP~l~v-G-D-~L~f~~~G  146 (177)
T d7odca1          74 MYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVE----RCNLPEMHV-G-D-WMLFENMG  146 (177)
T ss_dssp             EEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEECCCT-T-C-EEEECSCC
T ss_pred             EEEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEEE----CCCCCCCCC-C-C-EEEEECCC
T ss_conf             999789876876575435454200103578876661789998741788879845----543885452-6-7-89994788


Q ss_pred             HHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             6999747751567898579999
Q T0547           518 AYQEVLGMKHNLFTHPTEAIIS  539 (611)
Q Consensus       518 AYQeiLGd~HNLfg~t~~v~v~  539 (611)
                      ||.-.++..+|-|..+..+.|.
T Consensus       147 AYt~~~ss~FNGf~~p~v~~v~  168 (177)
T d7odca1         147 AYTVAAASTFNGFQRPNIYYVM  168 (177)
T ss_dssp             SSSGGGCCCGGGCCCCEEEEEE
T ss_pred             CCHHHCCCCCCCCCCCEEEEEE
T ss_conf             5521105688898899799997


No 11 
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=98.37  E-value=8.5e-07  Score=68.18  Aligned_cols=88  Identities=20%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf             788865104873364374663014677765---56778887896078886020699974775156789857999988996
Q T0547           468 LDEEPTRSASIWDITCDSDGEISYSKDKPL---FLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKG  544 (611)
Q Consensus       468 l~e~P~~~~~l~DiTCDSDG~i~~~~~~~l---~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~~~~~g  544 (611)
                      ....|.....+++-||+|-..+...+.-..   .+.++.. |  =+|.|+.+|||.-.+...+|-++.+.+|.+.  + |
T Consensus        79 ~~~~~~~~~~I~Gp~C~~~D~l~~~~~l~~~~~~~p~l~~-G--D~l~i~~~GAY~~s~ss~Fn~~~~Pa~V~~~--~-g  152 (174)
T d1knwa1          79 LEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKA-G--DYLVLHDTGAYGASMSSNYNSRPLLPEVLFD--N-G  152 (174)
T ss_dssp             CTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCT-T--CEEEEESCSSSSGGGCCCTTTCCCCCEEEEE--T-T
T ss_pred             CCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC-C--CEEEEECCCCCHHHHCCCCCCCCCCCEEEEE--C-C
T ss_conf             2357736899980577887688204565521134777899-9--9999931513021436645599988199999--9-9


Q ss_pred             EEEEEECCCCCHHHHHHH
Q ss_conf             288751378878999987
Q T0547           545 YEVEGIIEAQSILDTLED  562 (611)
Q Consensus       545 ~~i~~~~~gdt~~~vL~~  562 (611)
                       .++-+.+.+|.+|+++.
T Consensus       153 -~~~lIr~ret~edl~~~  169 (174)
T d1knwa1         153 -QARLIRRRQTIEELLAL  169 (174)
T ss_dssp             -EEEEEECCCCHHHHHTT
T ss_pred             -EEEEEECCCCHHHHHHC
T ss_conf             -89999868999999853


No 12 
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.91  E-value=2.6e-06  Score=64.49  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEE
Q ss_conf             31201354678886510487336437466301467776556778887896078886020699974775156789857999
Q T0547           459 NFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAII  538 (611)
Q Consensus       459 ~Fpi~Pl~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v  538 (611)
                      .+++.+..  ...+.....+++-||+|-..+..    ..+++++.. |  -+|.|..+|||--.+...+|-+..+-+|.+
T Consensus        72 ~~~~~~~~--~~~~~~~~~v~Gp~C~s~D~l~~----~~~lp~l~~-G--D~l~i~~~GAY~~smss~fN~~~~PaeVl~  142 (170)
T d1twia1          72 YHHIINCK--VKNEKEVVSIAGGLCESSDVFGR----DRELDKVEV-G--DVLAIFDVGAYGISMANNYNARGRPRMVLT  142 (170)
T ss_dssp             CCCEEESB--CCSCEEEEEEECSSSCTTCEEEE----EEEEECCCT-T--CEEEEECCSSSSGGGCBCTTTCCCCEEEEE
T ss_pred             HCCCCCCC--CCCCCEEEEEECCCCCCCEEEEE----EEECCCCCC-C--CEEEEECCHHHHHHCCCCCCCCCCCEEEEE
T ss_conf             00321124--55550689970762464107898----620565689-8--999992705754350511028999829999


Q ss_pred             EECCCCEEEEEECCCCCHHHHHHH
Q ss_conf             988996288751378878999987
Q T0547           539 SINEKGYEVEGIIEAQSILDTLED  562 (611)
Q Consensus       539 ~~~~~g~~i~~~~~gdt~~~vL~~  562 (611)
                      .  ++++++  +.+.+|.+|+++.
T Consensus       143 ~--~g~~~l--Ir~ret~eDl~~~  162 (170)
T d1twia1         143 S--KKGVFL--IRERETYADLIAK  162 (170)
T ss_dssp             E--TTEEEE--EECCCCHHHHTTT
T ss_pred             E--CCEEEE--EECCCCHHHHHHC
T ss_conf             8--998999--9858999999855


No 13 
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.63  E-value=0.0039  Score=40.56  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC
Q ss_conf             479999999999999999999708898723787453378----7899999998466678516622889999999648998
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEG  126 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~  126 (611)
                      +.+-|+++++.+++.-          |. +.+--+|+|-    ...|.+.+ +.|..   +|=|++..|=...+..|...
T Consensus         2 dl~al~~N~~~ir~~~----------~~-~i~aVVKanAYGhG~~~va~~l-~~g~~---~faVa~~~Ea~~LR~~g~~~   66 (226)
T d1rcqa2           2 DLQALRHNYRLAREAT----------GA-RALAVIKADAYGHGAVRCAEAL-AAEAD---GFAVACIEEGLELREAGIRQ   66 (226)
T ss_dssp             EHHHHHHHHHHHHHHH----------CS-EEEEECHHHHHTTCHHHHHHHH-TTTCS---EEEESSHHHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHCC----------CC-CEEEEEEECCCCCCHHHHHHHH-HHCCC---HHHHHHHCCHHHHHHCCCCC
T ss_conf             7899999999997454----------99-5999981335617599999999-96666---11355410089999729998


Q ss_pred             CCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             81787889899999999854235710489866889999999999984698622688885078877642204666564788
Q T0547           127 APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGL  206 (611)
Q Consensus       127 ~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl  206 (611)
                      ..++++|.-+.++.+.+.     .+++.+++.+...++.+...+   .+...+  +=++.+|         |-  +++|+
T Consensus        67 ~Ilvl~~~~~~~~~~~~~-----~~~i~~~i~~~~~~~~~~~~~---~~~~~~--vhlkiDT---------GM--~RlG~  125 (226)
T d1rcqa2          67 PILLLEGFFEASELELIV-----AHDFWCVVHCAWQLEAIERAS---LARPLN--VWLKMDS---------GM--HRVGF  125 (226)
T ss_dssp             CEEETTCCSSGGGHHHHH-----HTTEEEEECSHHHHHHHHHCC---CSSCEE--EEEEBCS---------SS--CSSSB
T ss_pred             CEEEECCCCCHHHHHHHH-----HCCCCCEECCHHHHHHHHHHH---HCCCEE--EEEEEEC---------CC--CCCCC
T ss_conf             558711468778999998-----516661544299999999974---125226--8999834---------64--32466


Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             989999999999866898734788863388
Q T0547           207 TSTELIEAVNLLKENKLLEQFTMIHFHLGS  236 (611)
Q Consensus       207 ~~~ei~~~i~~l~~~~~l~~L~gLHfHIGS  236 (611)
                      +.+|+.++++.++..+.+ .+.|+--|..+
T Consensus       126 ~~~e~~~~~~~~~~~~~l-~~~gi~tHfa~  154 (226)
T d1rcqa2         126 FPEDFRAAHERLRASGKV-AKIVMMSHFSR  154 (226)
T ss_dssp             CHHHHHHHHHHHHHTTCE-EEEEEECCCSS
T ss_pred             CHHHHHHHHHHHHCCCCC-CCEECCCCCCC
T ss_conf             858888888876413443-30000354356


No 14 
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.62  E-value=0.0039  Score=40.52  Aligned_cols=165  Identities=13%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC----CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC
Q ss_conf             479999999999999999999708898723787453378----7899999998466678516622889999999648998
Q T0547            51 FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQ----YPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEG  126 (611)
Q Consensus        51 f~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~----~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~  126 (611)
                      +.+-|+++++.+++.-         +++-+.+--||+|-    ...|.+.+.+.|.+   +|=|++-.|-.....++...
T Consensus         2 dl~al~~N~~~ir~~~---------~~~~~i~aVVKAnAYGhG~~~ia~~l~~~G~~---~f~Va~i~EA~~LR~~g~~~   69 (233)
T d1bd0a2           2 DLDAIYDNVENLRRLL---------PDDTHIMAVVKANAYGHGDVQVARTALEAGAS---RLAVAFLDEALALREKGIEA   69 (233)
T ss_dssp             EHHHHHHHHHHHHHHS---------CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEESSHHHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHHC---------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---CCHHHHHCCHHHHHHHCCCC
T ss_conf             7899999999999848---------99896999972234758779999999965767---43165302089999827764


Q ss_pred             CCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             81787889899999999854235710489866889999999999984698622688885078877642204666564788
Q T0547           127 APITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGL  206 (611)
Q Consensus       127 ~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl  206 (611)
                      ..++++|.-.. +++.+.     .+++.+++.+.+.++.+...+  +.+.+.++-|.|  +         ||  -.++|+
T Consensus        70 ~Ilvl~~~~~~-~~~~~~-----~~~i~~~v~~~~~~~~~~~~~--~~~~~~~vhLkv--D---------TG--M~RlG~  128 (233)
T d1bd0a2          70 PILVLGASRPA-DAALAA-----QQRIALTVFRSDWLEEASALY--SGPFPIHFHLKM--D---------TG--MGRLGV  128 (233)
T ss_dssp             CEEECSCCCGG-GHHHHH-----HTTEEEEECCHHHHHHHHHHC--CCSSCEEEEEEB--C---------SS--SCSSSB
T ss_pred             EEEECCCCCCH-HHHHHH-----HCCCCCEEEHHHHHHHHHHHH--CCCCCEEEEEEE--C---------CC--CCCCCC
T ss_conf             47312687607-788765-----414642343699865566520--357524789986--2---------56--666789


Q ss_pred             CHHH-HHHHHHHHHHCCCCCCEEEEEEECCCC-CCCHHHHHHHHH
Q ss_conf             9899-999999998668987347888633887-678899999999
Q T0547           207 TSTE-LIEAVNLLKENKLLEQFTMIHFHLGSQ-ITEIHPLKKALN  249 (611)
Q Consensus       207 ~~~e-i~~~i~~l~~~~~l~~L~gLHfHIGSQ-I~di~~~~~ai~  249 (611)
                      ..++ .....+.++..+.+ .+.|+.-|..+- ..+.......++
T Consensus       129 ~~~e~~~~~~~~~~~~~~l-~i~Gi~THla~ad~~~~~~~~~q~~  172 (233)
T d1bd0a2         129 KDEEETKRIVALIERHPHF-VLEGLYTHFATADEVNTDYFSYQYT  172 (233)
T ss_dssp             CSHHHHHHHHHHHHHSTTE-EEEEEECCCSSTTSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCC-CHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             8489899999998506664-2466531204777522047899999


No 15 
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=62.76  E-value=4.4  Score=17.47  Aligned_cols=196  Identities=12%  Similarity=0.069  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHC--C-CCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEEE
Q ss_conf             9999999999999999970--8-898723787453378789999999846667851662288999999964899881787
Q T0547            55 IQKQIENIYGNFNKARKEF--G-YKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV  131 (611)
Q Consensus        55 l~~ri~~l~~aF~~A~~~~--~-Y~g~y~~vYaiKaN~~~~Vv~~i~~~G~~~~~GlEv~Sk~EL~~ala~g~~~~~Ii~  131 (611)
                      |..|++++++.-..|.+..  + -+.+.+.+=..| ++....++.+.++|... ||=-  =..|+..-...-.+.-.-.|
T Consensus        13 i~~~~~~i~~~I~~~~~~~~~~r~~~~V~LiaVsK-~~~~~~I~~~~~~G~~~-fGEN--rvQE~~~K~~~l~~~i~wHf   88 (244)
T d1ct5a_          13 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSK-LKPASDIQILYDHGVRE-FGEN--YVQELIEKAKLLPDDIKWHF   88 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------CCEEEEECT-TSCHHHHHHHHHHTCCE-EEEC--CHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCHHHHHHHHHCCCCH-HHCC--HHHHHHHHCCCCCCCEEEEE
T ss_conf             99999999999999988765389978669999989-99999999999849861-2004--04556542012322012122


Q ss_pred             CCC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             889-899999999854235710489866889999999999984698--62268888507887764220466656478898
Q T0547           132 NGF-KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP--KPNIGLRVRLHSAGVGIWAKSGGINSKFGLTS  208 (611)
Q Consensus       132 nG~-Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v--~p~IgiRv~l~~~~~g~~~~Tgg~~SKFGl~~  208 (611)
                      =|- -+.. ++.++.  ....-.+=.||++.-+++|.+.+......  ...+.|-||           ++++.+|.|+++
T Consensus        89 IG~LQsNK-vk~i~~--~~~~~~I~svds~kla~~l~~~~~~~~~~~~~~~~~iQVN-----------i~~e~~KsG~~~  154 (244)
T d1ct5a_          89 IGGLQTNK-CKDLAK--VPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQIN-----------TSHEDQKSGLNN  154 (244)
T ss_dssp             CSCCCGGG-HHHHHH--CTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBC-----------CSSSCCSSSBCC
T ss_pred             ECCCCCCH-HHHHHH--HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE-----------CCCCCCCCCCCC
T ss_conf             24555123-999997--3364333310001204677788765311357622677651-----------366666678795


Q ss_pred             H-HHHHHHHHHH--HCCCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             9-9999999998--66898734788863388767--88999999999999999999717994058724
Q T0547           209 T-ELIEAVNLLK--ENKLLEQFTMIHFHLGSQIT--EIHPLKKALNEAGNIYTELRKMGAKNLKAINL  271 (611)
Q Consensus       209 ~-ei~~~i~~l~--~~~~l~~L~gLHfHIGSQI~--di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDI  271 (611)
                      + ++.++.+.+.  +.+.+ .+.|| +-||....  +-........++..++.++...... ...|-+
T Consensus       155 ~~~l~~~~~~~~~~~~~~l-~l~GL-M~i~p~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~-~~~LSM  219 (244)
T d1ct5a_         155 EAEIFEVIDFFLSEECKYI-KLNGL-MTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT-SLKLSM  219 (244)
T ss_dssp             HHHHHHHHHHHHSTTCCSE-EEEEE-ECCCCCC---------HHHHHHHHHHHHHHHHHCC-CCEEEC
T ss_pred             HHHHHHHHHHHHHHHCCCC-HHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCEEEC
T ss_conf             7899999999999755621-02054-33346788803457889999999999998353799-797717


No 16 
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]}
Probab=49.32  E-value=6.7  Score=16.12  Aligned_cols=94  Identities=21%  Similarity=0.169  Sum_probs=47.6

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----EEEEECCCCCCCCCCCCCC--CCCCCCCHHHHHHHHH
Q ss_conf             478886338876788999999999999999999717994----0587245565547777777--7777888899999999
Q T0547           227 FTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKN----LKAINLGGGLAVEYSQFKN--EKSRNYTLREYANDVV  300 (611)
Q Consensus       227 L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~----l~~LDIGGGlgV~Y~~~~~--~~s~ny~l~eya~~Iv  300 (611)
                      +.|--.|.||.-   ..-++|+..++++..++.++..+.    +..-.+-||-..+=..+.-  ..++.+.-.+..+.+.
T Consensus        10 i~G~~~Hag~~P---~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~g~i~gG~~~NviP~~a~~~~d~R~~~~~~~~~~~   86 (113)
T d1cg2a2          10 ITGKASHAGAAP---ELGVNALVEASDLVLRTMNIDDKAKNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAM   86 (113)
T ss_dssp             EECBCEETTSCG---GGSBCHHHHHHHHHHHHGGGCBTTTTEEEEEEEEEECSSTTEECSEEEEEEEEEESSHHHHHHHH
T ss_pred             EEECCCHHCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCHHHHHHHH
T ss_conf             983064000473---22579789999999998741022542146788886224446016858999998518977899999


Q ss_pred             HHHHHHHHHCCCCCCE--EEEECCH
Q ss_conf             9999999964899877--8870756
Q T0547           301 FILKNIAEQKKDLEPD--IFIESGR  323 (611)
Q Consensus       301 ~~i~~~c~~~~vp~P~--Ii~EpGR  323 (611)
                      ..++++|++..++..+  +..|.||
T Consensus        87 ~~i~~~~~~~~~~~~~~ev~~~~~~  111 (113)
T d1cg2a2          87 KTLEERAQQKKLPEADVKVIVTRGR  111 (113)
T ss_dssp             HHHHHHHTSCSSTTCEEEEEEEECS
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             9999999973389977999985358


No 17 
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}
Probab=47.84  E-value=7.5  Score=15.76  Aligned_cols=60  Identities=13%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCEEEEECCCCC
Q ss_conf             8999999999986689-8734788863388767889999999999999999997179---940587245565
Q T0547           208 STELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGA---KNLKAINLGGGL  275 (611)
Q Consensus       208 ~~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~---~~l~~LDIGGGl  275 (611)
                      ...+.+.++.+++.+. ++ -.|+++|++.+-+++..+++++++       +.+.|.   ..+..|||+..-
T Consensus       190 ~~~~~~lv~~L~~~g~pID-gIG~Q~H~~~~~p~~~~~~~~l~~-------~~~~g~~l~v~ITElDV~~~~  253 (346)
T d1w32a_         190 TTALVNLVQRLLNNGVPID-GVGFQMHVMNDYPSIANIRQAMQK-------IVALSPTLKIKITELDVRLNN  253 (346)
T ss_dssp             HHHHHHHHHHHHHTTCCCC-EEEECCEEESSSSCHHHHHHHHHH-------HHTTCSSCEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCHHHHHHHHHH-------HHHHCCCCEEEEEEEEEECCC
T ss_conf             8999999999972678644-278874215789998999999999-------998589961799887760577


No 18 
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=43.19  E-value=3.4  Score=18.38  Aligned_cols=16  Identities=44%  Similarity=0.526  Sum_probs=11.1

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             3643746630146777
Q T0547           480 DITCDSDGEISYSKDK  495 (611)
Q Consensus       480 DiTCDSDG~i~~~~~~  495 (611)
                      ..||||||.--.|..+
T Consensus         2 nf~cdsd~cdl~fttk   17 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTK   17 (31)
T ss_dssp             CEECSSSSCCCEESSH
T ss_pred             CCCCCCCCCCEEEEEH
T ss_conf             7414588852388626


No 19 
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.43  E-value=9.3  Score=15.07  Aligned_cols=63  Identities=11%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             687278888889999999855799858987479999999999999999999708898723787453
Q T0547            21 VCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLK   86 (611)
Q Consensus        21 l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~ri~~l~~aF~~A~~~~~Y~g~y~~vYaiK   86 (611)
                      +.|+|...-||.+|.+-.++.|.|+--|-.+.+.|++||.+-.++|++..   ..++.-.++|-..
T Consensus         2 lviRpv~~~Dl~~L~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~Sf~~~~---~~~~~~~YlFVLE   64 (338)
T d1ylea1           2 LVMRPAQAADLPQVQRLAADSPVGVTSLPDDAERLRDKILASEASFAAEV---SYNGEESYFFVLE   64 (338)
T ss_dssp             EEEEECCGGGHHHHHHHHHHSCTTCTTSCSCHHHHHHHHHHHHHHHHCTT---CCCSCCEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEEE
T ss_conf             58972753109999999997399965599999999999999999870657---8888753799999


No 20 
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}
Probab=40.28  E-value=9.6  Score=14.94  Aligned_cols=56  Identities=11%  Similarity=0.028  Sum_probs=27.5

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99881787889899999999854235710489866-8899999999999846986226888
Q T0547           124 NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIE-GLNELEAIIDIAKERFKPKPNIGLR  183 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViD-s~~EL~~I~~ia~~~l~v~p~IgiR  183 (611)
                      .++.+|.==||-+-.....  ++.+.|.+|+ -|| |..-++...+.++. .++..++-+.
T Consensus        66 ~~~~~vLDiGcG~G~~~~~--la~~~~~~v~-gvD~s~~~i~~a~~~~~~-~gl~~~v~~~  122 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARF--LVRKFGVSID-CLNIAPVQNKRNEEYNNQ-AGLADNITVK  122 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHH--HHHHHCCEEE-EEESCHHHHHHHHHHHHH-HTCTTTEEEE
T ss_pred             CCCCEEEEECCCCCHHHHH--HHCCCCCEEE-EEECCCHHHHHHHCCCCC-CCCCCCCCCC
T ss_conf             9999898709997077765--3205795799-995340244332102333-3333322223


No 21 
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=39.14  E-value=5.9  Score=16.52  Aligned_cols=10  Identities=10%  Similarity=0.611  Sum_probs=3.6

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999997369
Q T0547           386 ESILTLFDLG  395 (611)
Q Consensus       386 ~~~~~~f~~G  395 (611)
                      +.|.+.|+.|
T Consensus       181 ~~c~~~Y~~g  190 (229)
T d1dlca3         181 DHCVKWYNVG  190 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999978


No 22 
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=38.31  E-value=10  Score=14.73  Aligned_cols=92  Identities=11%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf             9999999986689873478886338876788999999999999999999717994058724556-554777777777778
Q T0547           211 LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGG-LAVEYSQFKNEKSRN  289 (611)
Q Consensus       211 i~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGGG-lgV~Y~~~~~~~s~n  289 (611)
                      +.++.+.+.+.++  .+..+|...+-...+......+++.+.+...-.+++|++   ++-+..| .+-+           
T Consensus        48 ~~~l~~~l~~~gl--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~---~i~~~~~~~~~~-----------  111 (278)
T d1i60a_          48 LDDLAEYFQTHHI--KPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVK---YVVAVPLVTEQK-----------  111 (278)
T ss_dssp             HHHHHHHHHTSSC--EEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCC---EEEEECCBCSSC-----------
T ss_pred             HHHHHHHHHHCCC--CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCC-----------
T ss_conf             9999999998699--189975677778899899999999999999999974998---455666668888-----------


Q ss_pred             CCHHHHHHHHHHHHHHHH---HHCCCCCCEEEEEC
Q ss_conf             888999999999999999---96489987788707
Q T0547           290 YTLREYANDVVFILKNIA---EQKKDLEPDIFIES  321 (611)
Q Consensus       290 y~l~eya~~Iv~~i~~~c---~~~~vp~P~Ii~Ep  321 (611)
                      ++.++.-+.++..++++|   ++.|+   .|.+||
T Consensus       112 ~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE~  143 (278)
T d1i60a_         112 IVKEEIKKSSVDVLTELSDIAEPYGV---KIALEF  143 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHGGGTC---EEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC---EEEEEE
T ss_conf             77799999999999999999997398---246431


No 23 
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.30  E-value=12  Score=14.17  Aligned_cols=55  Identities=7%  Similarity=-0.015  Sum_probs=25.7

Q ss_pred             CCCCCEEECCCCCHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             998817878898999999998-54235710489866889999999999984698622688
Q T0547           124 NEGAPITVNGFKDRELINIGF-IAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGL  182 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl-~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~Igi  182 (611)
                      .|+.++.==||---.   +|+ .+.+-|.+|+-+-=|...++...+.+++ .+...++-+
T Consensus        61 ~~G~~VLDiGCG~G~---~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~-~g~~~~v~~  116 (285)
T d1kpga_          61 QPGMTLLDVGCGWGA---TMMRAVEKYDVNVVGLTLSKNQANHVQQLVAN-SENLRSKRV  116 (285)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT-CCCCSCEEE
T ss_pred             CCCCEEEEECCCCHH---HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             999889993574018---88988752896148871437789999999876-411112688


No 24 
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}
Probab=33.05  E-value=12  Score=14.14  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHH
Q ss_conf             99999999986689-87347888633887678899
Q T0547           210 ELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHP  243 (611)
Q Consensus       210 ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~  243 (611)
                      .+...++.+++.+. ++ -.|+++|+++...++..
T Consensus       205 ~~~~~v~~l~~~g~pid-gIG~Q~H~~~~~~~~~~  238 (371)
T d1r85a_         205 ALYNLVKQLKEEGVPID-GIGHQSHIQIGWPSEAE  238 (371)
T ss_dssp             HHHHHHHHHHHTTCCCC-EEEECCEECSSSSCHHH
T ss_pred             HHHHHHHHHHHCCCCCC-EEECCCCCCCCCCCHHH
T ss_conf             99999999997799744-14334123679988899


No 25 
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]}
Probab=32.82  E-value=11  Score=14.63  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=38.2

Q ss_pred             HHHHCCCCCCCEEEC-----C-C--CCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf             999648998817878-----8-9--899--99999985423571048986688999999999998469862268888507
Q T0547           118 LAMAYNNEGAPITVN-----G-F--KDR--ELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLH  187 (611)
Q Consensus       118 ~ala~g~~~~~Ii~n-----G-~--Kd~--e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiRv~l~  187 (611)
                      +|..++.|.++|...     | |  |..  .+.-.|+.++++|+-|.++.+-.+++.        ....++..-+|++.+
T Consensus        89 iA~~Lgl~~~~VrVi~~~vGGgFG~K~~~~~~~~aa~aA~~~grPVk~~~sR~e~~~--------~~~~r~~~~~~~~~g  160 (597)
T d1vlba4          89 IAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQ--------YTGKRSPWEMNVKFA  160 (597)
T ss_dssp             HHHHHTCCGGGEEEEECCCSCCTTGGGSCSSHHHHHHHHHHHSSCEEEECCHHHHHH--------SSCBCCCEEEEEEEE
T ss_pred             HHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHCC--------CCCCCCCEEEEEEEE
T ss_conf             999969987998999488875698878635999999999976998412113233203--------456665479875665


Q ss_pred             CCCCCC
Q ss_conf             887764
Q T0547           188 SAGVGI  193 (611)
Q Consensus       188 ~~~~g~  193 (611)
                      .+..|+
T Consensus       161 ~~~dG~  166 (597)
T d1vlba4         161 AKKDGT  166 (597)
T ss_dssp             ECTTCC
T ss_pred             ECCCCC
T ss_conf             223245


No 26 
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.64  E-value=3.5  Score=18.24  Aligned_cols=10  Identities=30%  Similarity=0.291  Sum_probs=3.2

Q ss_pred             CCCHHHHHHH
Q ss_conf             7878999999
Q T0547            88 NQYPGFVKNL   97 (611)
Q Consensus        88 N~~~~Vv~~i   97 (611)
                      ||.-.+++.|
T Consensus        17 NpS~~i~~~L   26 (206)
T d1iu8a_          17 NPTMDIVEAL   26 (206)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
T ss_conf             8599999985


No 27 
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}
Probab=29.57  E-value=14  Score=13.73  Aligned_cols=36  Identities=8%  Similarity=0.148  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf             999999999866898734788863388767889999
Q T0547           210 ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLK  245 (611)
Q Consensus       210 ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~  245 (611)
                      .....++.+++.+.--...|+|.|.+.+-.+...++
T Consensus       188 ~~~~~v~~l~~~g~~idgiG~q~h~~~~~~~~~~i~  223 (330)
T d1n82a_         188 KIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIR  223 (330)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECCEEESSSSCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf             689999999968997541787534766767889999


No 28 
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}
Probab=29.03  E-value=14  Score=13.67  Aligned_cols=29  Identities=14%  Similarity=0.108  Sum_probs=18.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf             688999999999998469862268888507887764
Q T0547           158 EGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGI  193 (611)
Q Consensus       158 Ds~~EL~~I~~ia~~~l~v~p~IgiRv~l~~~~~g~  193 (611)
                      =+.+|+..|.+.|+++ +      |+|=|.++..||
T Consensus        77 yt~~e~~~lv~yA~~r-g------I~viPeiD~PGH  105 (344)
T d1yhta1          77 LSYRQLDDIKAYAKAK-G------IELIPELDSPNH  105 (344)
T ss_dssp             BCHHHHHHHHHHHHHT-T------CEEEEEEEESSS
T ss_pred             CCHHHHHHHHHHHHHC-C------CEEEECCCHHHH
T ss_conf             3799999999999976-9------789866532558


No 29 
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.74  E-value=15  Score=13.51  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCEEEEE--EC-
Q ss_conf             546788865104873364374663014677765567788878960788860206999747751567898579999--88-
Q T0547           465 LDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS--IN-  541 (611)
Q Consensus       465 l~rl~e~P~~~~~l~DiTCDSDG~i~~~~~~~l~lh~~~~~~e~y~lG~FlvGAYQeiLGd~HNLfg~t~~v~v~--~~-  541 (611)
                      |.++++. ..+-.|..-+.|+||+++.+...    -.+. ++ .|-| .|.+|+|=.-.|--  -|  -.+|.|+  +. 
T Consensus        23 L~~~~~~-~~~~~i~~~~Td~dGRi~~~~~~----~~~~-~G-~Y~l-~F~~~~Yf~~~g~~--~f--~p~v~i~F~v~d   90 (115)
T d1f86a_          23 VFRKAAD-DTWEPFASGKTSESGELHGLTTE----EEFV-EG-IYKV-EIDTKSYWKALGIS--PF--HEHAEVVFTAND   90 (115)
T ss_dssp             EEEECTT-SCEEEEEEEECCTTSEECCSCCT----TTCC-SE-EEEE-EECHHHHHHHTTCC--CS--EEEEEEEEEEST
T ss_pred             EEEECCC-CCEEEEEEEEECCCCCCCCCCCC----CCCC-CE-EEEE-EEEHHHHHHHCCCC--CC--CCEEEEEEEECC
T ss_conf             9998899-97799999996799802676676----6677-76-7999-99879989873998--77--743899999548


Q ss_pred             CCC--EEEEEEC
Q ss_conf             996--2887513
Q T0547           542 EKG--YEVEGII  551 (611)
Q Consensus       542 ~~g--~~i~~~~  551 (611)
                      +.+  |.|--++
T Consensus        91 ~~~~hYHiPlll  102 (115)
T d1f86a_          91 SGPRRYTIAALL  102 (115)
T ss_dssp             TSCCEEEEEEEE
T ss_pred             CCCCCEEEEEEE
T ss_conf             999835573897


No 30 
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=25.90  E-value=16  Score=13.28  Aligned_cols=80  Identities=18%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHH-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH
Q ss_conf             43306746872788888899999998557998589874799999-99999999999999708898723787453378789
Q T0547            14 FIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQK-QIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPG   92 (611)
Q Consensus        14 F~i~~G~l~v~p~~~~~l~dlv~~l~~~~~~tPllvrf~dil~~-ri~~l~~aF~~A~~~~~Y~g~y~~vYaiKaN~~~~   92 (611)
                      |.+-+..+.+   |.-.+.+|-+.+++.|...+|+|..+.+.+. ...++.+++.++    +.  .+..+.-++.||...
T Consensus         4 ~~~~~~~~~f---G~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~----gi--~~~vf~~v~~~p~~~   74 (385)
T d1rrma_           4 RMILNETAWF---GRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAA----GL--AWAIYDGVVPNPTIT   74 (385)
T ss_dssp             EEECCSEEEE---STTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHT----TC--EEEEECBCCSSCBHH
T ss_pred             EEECCCCCEE---CCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHC----CC--EEEEECCCCCCCCHH
T ss_conf             2666997279---86899999999997699979999896556580899999999875----98--599986826997989


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998466
Q T0547            93 FVKNLVKLGK  102 (611)
Q Consensus        93 Vv~~i~~~G~  102 (611)
                      .|+++++.-.
T Consensus        75 ~v~~~~~~~~   84 (385)
T d1rrma_          75 VVKEGLGVFQ   84 (385)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9998865430


No 31 
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=24.79  E-value=17  Score=13.14  Aligned_cols=61  Identities=10%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCC
Q ss_conf             899999999998668987347888633887678899999999999999999971799-40587245565
Q T0547           208 STELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK-NLKAINLGGGL  275 (611)
Q Consensus       208 ~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~-~l~~LDIGGGl  275 (611)
                      .......++.+++.+.--...|+|.|.+....++..++.++++       +...|.+ .+..+|+....
T Consensus       201 ~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~l~~-------~~~~g~~I~iTEldi~~~~  262 (364)
T d1us3a2         201 TTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKK-------VVDLGLLVKITELDVAVNQ  262 (364)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHHH-------HHTTTCEEEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHH-------HHHCCCEEEEEEEEEECCC
T ss_conf             4678999999986899655532410025799998999999999-------9854990588740474146


No 32 
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}
Probab=24.26  E-value=17  Score=13.07  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=17.3

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9872858889999999999852688988999999999
Q T0547           560 LEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGEL  596 (611)
Q Consensus       560 L~~v~y~~~~l~~~~~~~~~~~~~~~~~e~~~~l~~~  596 (611)
                      ....+++.+++.+..+.-++ +..+++++++++++.|
T Consensus       321 ~~~~~ls~~el~~l~~nsi~-~sF~~~~~K~~l~~~~  356 (357)
T d2amxa1         321 YIHLNFTLEEFMIMNNWAFE-KSFVSDDVKSELKALY  356 (357)
T ss_dssp             HHHHCCCHHHHHHHHHHHHH-HCCSCHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHH
T ss_conf             99819899999999999999-8689999999999865


No 33 
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]}
Probab=23.86  E-value=17  Score=13.01  Aligned_cols=10  Identities=20%  Similarity=0.136  Sum_probs=3.3

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998668
Q T0547           213 EAVNLLKENK  222 (611)
Q Consensus       213 ~~i~~l~~~~  222 (611)
                      ++++.+++++
T Consensus        65 ~~v~~a~~~g   74 (302)
T d1v0la_          65 RVYNWAVQNG   74 (302)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
T ss_conf             9999999879


No 34 
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.49  E-value=16  Score=13.28  Aligned_cols=59  Identities=8%  Similarity=0.094  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC
Q ss_conf             89899999999998668987347888633887678899999999999999999971799405872455-6554
Q T0547           206 LTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGG-GLAV  277 (611)
Q Consensus       206 l~~~ei~~~i~~l~~~~~l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~~l~~LDIGG-GlgV  277 (611)
                      ++++++.++.+.+.+.+.    --+||+.-.+|   +-...-..++-.+..+|.+.|.+      .|| ||+|
T Consensus        72 lS~~~lR~iadIAdkYg~----G~lrfTtRqnI---Ef~~v~~~~v~~L~~eL~~~g~~------~Gg~Gfpv  131 (134)
T d2v4jb2          72 MSITHIREMCDIADKYCG----GHLRFTTRNNV---EFMVADEASLKALKEDLASRKFD------GGSLKFPI  131 (134)
T ss_dssp             EEHHHHHHHHHHHHHHST----TEEEECTTSCE---EEEESSHHHHHHHHHHHHHCBCT------TSCBSSCB
T ss_pred             CCHHHHHHHHHHHHHHCC----CCEEECCCCCE---EEECCCHHHHHHHHHHHHHCCCC------CCCCCCCC
T ss_conf             489999999999999787----82215477846---67349989999999999977997------78778897


No 35 
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=22.41  E-value=18  Score=12.81  Aligned_cols=15  Identities=13%  Similarity=0.206  Sum_probs=5.7

Q ss_pred             EECCHHHHHHHHHHH
Q ss_conf             866889999999999
Q T0547           156 TIEGLNELEAIIDIA  170 (611)
Q Consensus       156 ViDs~~EL~~I~~ia  170 (611)
                      .+++.+||+..++.|
T Consensus       155 ~v~~~~el~~al~~a  169 (208)
T d1ybha3         155 RVTKKADLREAIQTM  169 (208)
T ss_dssp             EECBHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             728999999999999


No 36 
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=22.29  E-value=18  Score=12.80  Aligned_cols=22  Identities=14%  Similarity=0.126  Sum_probs=16.0

Q ss_pred             CCCCCCEEECCCCCHHHHHHHH
Q ss_conf             8998817878898999999998
Q T0547           123 NNEGAPITVNGFKDRELINIGF  144 (611)
Q Consensus       123 g~~~~~Ii~nG~Kd~e~I~lAl  144 (611)
                      -+...+|+|.|.|+.++++.|+
T Consensus        59 IF~SGkivitGaks~~~~~~a~   80 (92)
T d1mp9a1          59 IFKSGKMVVTGAKSTDELIKAV   80 (92)
T ss_dssp             ECTTSEEEEECCSSHHHHHHHH
T ss_pred             EECCCEEEEECCCCHHHHHHHH
T ss_conf             9858879998259999999999


No 37 
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=21.90  E-value=7  Score=15.99  Aligned_cols=12  Identities=8%  Similarity=0.241  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999866
Q T0547           210 ELIEAVNLLKEN  221 (611)
Q Consensus       210 ei~~~i~~l~~~  221 (611)
                      ++.+.++.+.+.
T Consensus        43 ~~~~~ve~LId~   54 (223)
T d1ciya3          43 AFLVQIEQLINQ   54 (223)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999989


No 38 
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=21.59  E-value=19  Score=12.70  Aligned_cols=15  Identities=40%  Similarity=0.279  Sum_probs=9.4

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             678899999999999
Q T0547           238 ITEIHPLKKALNEAG  252 (611)
Q Consensus       238 I~di~~~~~ai~ea~  252 (611)
                      +.+...++.+++++.
T Consensus       150 v~~~~el~~al~~a~  164 (183)
T d2ji7a3         150 ANTPAELKAALEEAV  164 (183)
T ss_dssp             ECSHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHH
T ss_conf             689999999999999


No 39 
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=21.55  E-value=9.9  Score=14.85  Aligned_cols=13  Identities=8%  Similarity=0.118  Sum_probs=4.9

Q ss_pred             EEECCCCCCCHHH
Q ss_conf             8633887678899
Q T0547           231 HFHLGSQITEIHP  243 (611)
Q Consensus       231 HfHIGSQI~di~~  243 (611)
                      ...-|..+.|--.
T Consensus       136 S~daG~YlCN~~y  148 (210)
T d1auga_         136 SYTAGTFVCNHLF  148 (210)
T ss_dssp             BSCCCSSHHHHHH
T ss_pred             CCCCCCCCHHHHH
T ss_conf             4897750100688


No 40 
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.46  E-value=10  Score=14.83  Aligned_cols=12  Identities=33%  Similarity=0.473  Sum_probs=4.8

Q ss_pred             EECCCHHHHHHH
Q ss_conf             337878999999
Q T0547            86 KVNQYPGFVKNL   97 (611)
Q Consensus        86 KaN~~~~Vv~~i   97 (611)
                      +.|+.-.+++.+
T Consensus        15 ~~NpS~~vv~~L   26 (208)
T d1iofa_          15 KINPTERIAKDL   26 (208)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHC
T ss_conf             878589999856


No 41 
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.02  E-value=20  Score=12.61  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---EEEEECCCCCCCCCC
Q ss_conf             9899999999998668987347888633---8876788999999999999999999717994---058724556554777
Q T0547           207 TSTELIEAVNLLKENKLLEQFTMIHFHL---GSQITEIHPLKKALNEAGNIYTELRKMGAKN---LKAINLGGGLAVEYS  280 (611)
Q Consensus       207 ~~~ei~~~i~~l~~~~~l~~L~gLHfHI---GSQI~di~~~~~ai~ea~~ly~eL~~~g~~~---l~~LDIGGGlgV~Y~  280 (611)
                      .++.+..+++.++....  .|.+++|-|   |+.--  ..|-.+.++   +...|.++|+..   +...|--+|.     
T Consensus        83 ~P~n~~~F~~~L~~~~~--~l~~~~yaVfGlGds~Y--~~Fc~a~~~---l~~~L~~lGa~~i~~~g~~D~~~~~-----  150 (177)
T d1ja1a2          83 PTDNAQDFYDWLQETDV--DLTGVKFAVFGLGNKTY--EHFNAMGKY---VDQRLEQLGAQRIFELGLGDDDGNL-----  150 (177)
T ss_dssp             ECGGGHHHHHHHHHCCC--CCTTCEEEEEEEECSSS--SSTTHHHHH---HHHHHHHTTCEESSCCEEEETTTCH-----
T ss_pred             CCHHHHHHHHHHHHCCC--CCCCCEEEEEECCCCCH--HHHHHHHHH---HHHHHHHCCCCEEECCEEECCCCCC-----
T ss_conf             87769999998873120--23575378882588567--999799999---9999997699397865015079995-----


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             777777778888999999999999999
Q T0547           281 QFKNEKSRNYTLREYANDVVFILKNIA  307 (611)
Q Consensus       281 ~~~~~~s~ny~l~eya~~Iv~~i~~~c  307 (611)
                          ..    .+++|...+..++++.+
T Consensus       151 ----e~----~~~~W~~~l~~~L~~~~  169 (177)
T d1ja1a2         151 ----EE----DFITWREQFWPAVCEFF  169 (177)
T ss_dssp             ----HH----HHHHHHHHHHHHHHHHH
T ss_pred             ----HH----HHHHHHHHHHHHHHHHC
T ss_conf             ----78----99999999999999983


No 42 
>d1b6ra1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}
Probab=20.93  E-value=20  Score=12.60  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             89988178788989999999985423571048986688999999999998
Q T0547           123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKE  172 (611)
Q Consensus       123 g~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~  172 (611)
                      ..|...+..=| |+.   |   -+||+|| ++++-++.+|+..-++..++
T Consensus        20 ~~p~~~lH~Yg-Ke~---R---pgRKmGH-iti~~~d~~~l~~~~~~l~~   61 (79)
T d1b6ra1          20 KLPLVHLHWYD-KEV---R---PGRKVGH-LNLTDSDTSRLTATLEALIP   61 (79)
T ss_dssp             GSTTEEEEECC-CCC---C---TTCEEEE-EEEECSCHHHHHHHHHHHST
T ss_pred             HCCCCEEEECC-CCC---C---CCCEEEE-EEEECCCHHHHHHHHHHHHH
T ss_conf             18996776127-620---7---7842577-87514998999999999998


No 43 
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.85  E-value=20  Score=12.59  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=28.7

Q ss_pred             CC-CCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             48-998817878898999999998542357104898668899999999999846986226888
Q T0547           122 YN-NEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLR  183 (611)
Q Consensus       122 ~g-~~~~~Ii~nG~Kd~e~I~lAl~a~~lG~~v~IViDs~~EL~~I~~ia~~~l~v~p~IgiR  183 (611)
                      ++ .++.+|.==||---.....  .+.+.|.+++-+--|.+.++...+.+++ .+..-++-++
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~--~a~~~g~~v~git~s~~q~~~a~~~~~~-~~l~~~v~~~  116 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRH--AVAEYDVNVIGLTLSENQYAHDKAMFDE-VDSPRRKEVR  116 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHH--HHHHHCCEEEEEESCHHHHHHHHHHHHH-SCCSSCEEEE
T ss_pred             CCCCCCCEEEEECCCCHHHHHH--HHHHCCCCEEECCCHHHHHHHHHHHHHH-HCCCHHHHHH
T ss_conf             3999999788745762589999--9986475303105208899999999875-1111134455


No 44 
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.77  E-value=20  Score=12.58  Aligned_cols=21  Identities=10%  Similarity=0.208  Sum_probs=10.9

Q ss_pred             CCCCCEEECCCCCHHHHHHHH
Q ss_conf             998817878898999999998
Q T0547           124 NEGAPITVNGFKDRELINIGF  144 (611)
Q Consensus       124 ~~~~~Ii~nG~Kd~e~I~lAl  144 (611)
                      +...+++|.|.|+.++++.|+
T Consensus        58 F~SGKivitGaks~~~~~~a~   78 (99)
T d1qnaa1          58 FASGKMVCTGAKSEDFSKMAA   78 (99)
T ss_dssp             ETTSEEEEEEESSHHHHHHHH
T ss_pred             ECCCEEEEECCCCHHHHHHHH
T ss_conf             769779996469999999999


No 45 
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Probab=20.53  E-value=20  Score=12.54  Aligned_cols=58  Identities=17%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCC
Q ss_conf             8999999999986689-87347888633887678899999999999999999971799-405872455
Q T0547           208 STELIEAVNLLKENKL-LEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK-NLKAINLGG  273 (611)
Q Consensus       208 ~~ei~~~i~~l~~~~~-l~~L~gLHfHIGSQI~di~~~~~ai~ea~~ly~eL~~~g~~-~l~~LDIGG  273 (611)
                      ...+...++.+++.+. ++ -.|+.+|++....++..++..+.+       +.++|.+ .+..+||..
T Consensus       183 ~~~~~~lv~~l~~~GvpiD-gIGlQ~H~~~~~~~~~~i~~~l~~-------~~~lg~~i~iTElDv~~  242 (350)
T d1ur1a_         183 REATVEMIERLQKRGMPIH-GLGIQGHLGIDTPPIAEIEKSIIA-------FAKLGLRVHFTSLDVDV  242 (350)
T ss_dssp             HHHHHHHHHHHHHTTCCCC-EEEECCEEESSCSCHHHHHHHHHH-------HHTTTCEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCHHHHHHHHHH-------HHHCCCCEEECCCCEEC
T ss_conf             2779999999996899711-899724515899999999999999-------98639713533344330


Done!