Query T0548 OR3 , , 106 residues
Match_columns 106
No_of_seqs 116 out of 829
Neff 7.4
Searched_HMMs 15564
Date Fri May 21 18:04:25 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0548.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0548.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k6ya1 a.4.10.1 (A:1-46) N-te 83.2 0.6 3.9E-05 23.5 3.5 40 52-100 6-45 (46)
2 d1k6ya1 a.4.10.1 (A:1-46) N-te 83.1 0.61 3.9E-05 23.5 3.5 40 52-100 6-45 (46)
3 d1e0ea_ a.4.10.1 (A:) N-termin 81.4 0.72 4.6E-05 23.1 3.4 40 52-100 6-45 (46)
4 d1yfba1 b.129.1.3 (A:3-53) Tra 52.1 2.9 0.00019 19.8 1.3 16 38-53 11-26 (51)
5 d1qzma_ c.37.1.20 (A:) ATPase 33.3 17 0.0011 15.6 4.2 62 15-78 3-64 (94)
6 d2ptha_ c.56.3.1 (A:) Peptidyl 26.9 22 0.0014 15.0 2.5 35 60-94 108-151 (193)
7 d1n0ea_ b.129.1.2 (A:) Hypothe 14.8 36 0.0023 13.8 1.5 14 38-51 86-99 (141)
8 d1yfua1 b.82.1.20 (A:1-174) 3- 13.7 32 0.0021 14.0 1.0 17 90-106 157-173 (174)
9 d1ryba_ c.56.3.1 (A:) Chloropl 13.5 36 0.0023 13.8 1.2 35 60-94 108-151 (191)
10 d2ptha_ c.56.3.1 (A:) Peptidyl 12.2 49 0.0031 13.1 2.6 36 59-94 107-151 (193)
No 1
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=83.20 E-value=0.6 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=30.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHC
Q ss_conf 9999985156676478999999988632786568999999731706533
Q T0548 52 ELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQ 100 (106)
Q Consensus 52 ~il~~~H~~~h~G~~~~~~~l~~i~~~~~wp~m~~~v~~~v~~C~~Cq~ 100 (106)
+-.++.|+.-|....++. ..|--| +..++++|++|..||.
T Consensus 6 e~Aqe~H~k~H~n~~~L~-------~~F~ip--~~vAr~IV~~C~~Cq~ 45 (46)
T d1k6ya1 6 DKAQEEHEKYHSNWRAMA-------SDFNLP--PVVAKEIVASCDKCQL 45 (46)
T ss_dssp HHHHHHHHHHCCCHHHHH-------HHHTCC--HHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHCCHHHHH-------HHCCCC--HHHHHHHHHHHHHHCC
T ss_conf 989999999855999999-------881989--9999999987898608
No 2
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]} SCOP: d1wjca_ d1wjfa_ d1wjea_ d1e0ea_
Probab=83.08 E-value=0.61 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHC
Q ss_conf 9999985156676478999999988632786568999999731706533
Q T0548 52 ELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQ 100 (106)
Q Consensus 52 ~il~~~H~~~h~G~~~~~~~l~~i~~~~~wp~m~~~v~~~v~~C~~Cq~ 100 (106)
+-.++.|+.-|.....+ +..|--| +..+++.|++|..||+
T Consensus 6 e~AqeeH~k~H~n~~~L-------~~~F~lp--~~vAkeIV~~C~~Cq~ 45 (46)
T d1k6ya1 6 DKAQEEHEKYHSNWRAM-------ASDFNLP--PVVAKEIVASCDKCQL 45 (46)
T ss_dssp HHHHHHHHHHCCCHHHH-------HHHHTCC--HHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHCCCHHHH-------HHHCCCC--HHHHHHHHHHCCCCCC
T ss_conf 17799998645877899-------9871898--8899999851544688
No 3
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=81.39 E-value=0.72 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHC
Q ss_conf 9999985156676478999999988632786568999999731706533
Q T0548 52 ELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQ 100 (106)
Q Consensus 52 ~il~~~H~~~h~G~~~~~~~l~~i~~~~~wp~m~~~v~~~v~~C~~Cq~ 100 (106)
+-.++.|+.-|....++ +..|--| +..+++.|++|..||+
T Consensus 6 e~Aqe~H~k~H~N~~~L-------~~~F~lp--~~vAr~IV~~C~~Cq~ 45 (46)
T d1e0ea_ 6 EPAQEEHEKYHSNVKEL-------SHKFGIP--NLVARQIVNSCAQCQQ 45 (46)
T ss_dssp HHHHHHHHHHCCCHHHH-------HHHTCCC--HHHHHHHHHHCHHHHC
T ss_pred HHHHHHHHHHCCCHHHH-------HHHCCCC--HHHHHHHHHHHHHHCC
T ss_conf 78899999980499999-------9881998--9999999997798617
No 4
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=52.14 E-value=2.9 Score=19.78 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.0
Q ss_pred EECCEEEECHHHHHHH
Q ss_conf 2188446465878999
Q T0548 38 VYQGKPVMPDQFTFEL 53 (106)
Q Consensus 38 ~~~Gr~vvP~~~~~~i 53 (106)
..-||+|+|+++|..+
T Consensus 11 D~LGRiViPkElR~~L 26 (51)
T d1yfba1 11 DELGRVVIPIELRRTL 26 (51)
T ss_dssp CTTCEEECCHHHHHHT
T ss_pred CCCCCEECCHHHHHHC
T ss_conf 4688898209999765
No 5
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}
Probab=33.33 E-value=17 Score=15.61 Aligned_cols=62 Identities=8% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEECCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6988999998741233345765421884464658789999998515667647899999998863
Q T0548 15 YTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSP 78 (106)
Q Consensus 15 y~~ed~~~~~~~~~~~~~~~~~~~~~Gr~vvP~~~~~~il~~~H~~~h~G~~~~~~~l~~i~~~ 78 (106)
|+.+|...+-+.=..-.+-....+.++.+.+++.....|+..+.. ..|.+++.+.+.++.+.
T Consensus 3 Yt~~EK~~Iak~yLiPk~l~~~gl~~~~i~i~~~~l~~iI~~Ytr--EaGVR~Ler~i~~I~Rk 64 (94)
T d1qzma_ 3 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR--EAGVRGLEREISKLCRK 64 (94)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCC--CSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHH
T ss_conf 988999999999838899998666521135559999999999723--79998999999999999
No 6
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}
Probab=26.88 E-value=22 Score=15.02 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHH-H-HCC-------CCCHHHHHHHHHHC
Q ss_conf 56676478999999988-6-327-------86568999999731
Q T0548 60 LTHLSFSKMKALLERSH-S-PYY-------MLNRDRTLKNITET 94 (106)
Q Consensus 60 ~~h~G~~~~~~~l~~i~-~-~~~-------wp~m~~~v~~~v~~ 94 (106)
.+++||.|+...+..+. + .|+ -|.-..++.+||=+
T Consensus 108 Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~ 151 (193)
T d2ptha_ 108 GGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLG 151 (193)
T ss_dssp CCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCEECC
T ss_conf 98666554899999862330021022101488666972566079
No 7
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=14.80 E-value=36 Score=13.79 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=8.0
Q ss_pred EECCEEEECHHHHH
Q ss_conf 21884464658789
Q T0548 38 VYQGKPVMPDQFTF 51 (106)
Q Consensus 38 ~~~Gr~vvP~~~~~ 51 (106)
...||++||+.++.
T Consensus 86 D~~GRi~lp~~Lr~ 99 (141)
T d1n0ea_ 86 DTAGRVLIPNNLIN 99 (141)
T ss_dssp CTTSEEECCHHHHH
T ss_pred CCCCEEEECHHHHH
T ss_conf 56605960899998
No 8
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=13.73 E-value=32 Score=14.05 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=14.2
Q ss_pred HHHHCCCHHHCCCCCCC
Q ss_conf 99731706533388999
Q T0548 90 NITETCKACAQVNASKS 106 (106)
Q Consensus 90 ~~v~~C~~Cq~~n~~~~ 106 (106)
.=.|+|..|-.++|+|+
T Consensus 157 ee~RTC~~CG~v~P~k~ 173 (174)
T d1yfua1 157 EDKRRCPHCGQVHPGRA 173 (174)
T ss_dssp HHHHBCTTTCCBCCCSC
T ss_pred HHCCCCCCCCCCCCCCC
T ss_conf 41061887888389999
No 9
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}
Probab=13.55 E-value=36 Score=13.82 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHH-H-HCC-------CCCHHHHHHHHHHC
Q ss_conf 56676478999999988-6-327-------86568999999731
Q T0548 60 LTHLSFSKMKALLERSH-S-PYY-------MLNRDRTLKNITET 94 (106)
Q Consensus 60 ~~h~G~~~~~~~l~~i~-~-~~~-------wp~m~~~v~~~v~~ 94 (106)
.+++||.|++..+..+. + .|+ -|.-..++.+||-+
T Consensus 108 Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~ 151 (191)
T d1ryba_ 108 GGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQ 151 (191)
T ss_dssp CCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 77776733112898818860037874347998665870542289
No 10
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} SCOP: d1ryma_ d1ryba_ d1ryna_
Probab=12.21 E-value=49 Score=13.07 Aligned_cols=36 Identities=6% Similarity=0.038 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHHH--HCC-------CCCHHHHHHHHHHC
Q ss_conf 1566764789999999886--327-------86568999999731
Q T0548 59 QLTHLSFSKMKALLERSHS--PYY-------MLNRDRTLKNITET 94 (106)
Q Consensus 59 ~~~h~G~~~~~~~l~~i~~--~~~-------wp~m~~~v~~~v~~ 94 (106)
..+|+||.|++..+..+.. .|| -|+-..++.+||=+
T Consensus 107 ~Gg~gGHNGlkSI~~~LG~~~~f~RlRiGIGrP~~~~~v~~yVLs 151 (193)
T d2ptha_ 107 GGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLG 151 (193)
T ss_dssp SCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 778762125899999837899714899850788776762002379
Done!