Query         T0549 CvR118A, , 84 residues
Match_columns 84
No_of_seqs    101 out of 205
Neff          5.7 
Searched_HMMs 15564
Date          Fri May 21 18:06:42 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0549.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0549.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uj8a1 a.159.5.1 (A:13-76) Ir  83.5    0.53 3.4E-05   25.1   3.4   44   25-68      3-46  (64)
  2 d1uj8a1 a.159.5.1 (A:13-76) Ir  80.5     0.8 5.2E-05   24.1   3.4   45   25-69      3-47  (64)
  3 d1usta_ a.4.5.13 (A:) Histone   47.3     4.5 0.00029   19.8   1.7   54    9-64      9-66  (92)
  4 d2fxta1 d.17.4.13 (A:234-425)   40.5      11 0.00071   17.6   2.8   56    5-60     13-72  (192)
  5 d1a4pa_ a.39.1.2 (A:) Calcycli  34.4      12 0.00074   17.5   2.1   53    9-61      7-59  (92)
  6 d1ussa_ a.4.5.13 (A:) Histone   32.6      20  0.0013   16.2   3.9   39    9-48     10-50  (88)
  7 d1hsta_ a.4.5.13 (A:) Histone   26.2      26  0.0017   15.5   6.7   34    9-43      5-38  (74)
  8 d1mxga1 b.71.1.1 (A:362-435) B  19.8     8.4 0.00054   18.3  -0.8   26   20-54     42-69  (74)
  9 d1fpn1_ b.121.4.1 (1:) Rhinovi  19.1      36  0.0023   14.7   2.8   38   41-83    185-226 (269)
 10 d1i4ja_ d.55.1.1 (A:) Ribosoma  15.8      36  0.0023   14.7   1.6   40    1-50     39-89  (110)

No 1  
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=83.51  E-value=0.53  Score=25.10  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=39.1

Q ss_pred             CEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf             80638889989874179998330572238899986586136640
Q T0549            25 GWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQES   68 (84)
Q Consensus        25 GW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~~fei~~~   68 (84)
                      -|+..-.+.-.|.-++|+.||.+--|--|..+|-+++-|+=+-.
T Consensus         3 kW~D~~dIA~~L~e~~pd~DP~~irFtDL~~wV~~L~~F~Ddp~   46 (64)
T d1uj8a1           3 KWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQ   46 (64)
T ss_dssp             CTTCHHHHHHHHHHHSTTSCGGGCCHHHHHHHHHTSTTBCSCGG
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             50117889999987288999951123889998715778778835


No 2  
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=80.51  E-value=0.8  Score=24.09  Aligned_cols=45  Identities=18%  Similarity=0.356  Sum_probs=39.7

Q ss_pred             CEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
Q ss_conf             806388899898741799983305722388999865861366402
Q T0549            25 GWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQESR   69 (84)
Q Consensus        25 GW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~~fei~~~~   69 (84)
                      -|...-.+.-.|.-.+|+.||.+--|--|...|-+++-|+=+-..
T Consensus         3 kW~D~~dIA~~L~e~~pdvDP~~irFtDL~~wV~~L~~F~Ddp~~   47 (64)
T d1uj8a1           3 KWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQA   47 (64)
T ss_dssp             CTTCHHHHHHHHHHHSTTSCGGGCCHHHHHHHHHTSTTBCSCGGG
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCC
T ss_conf             661699999999987889897873159999999628787899664


No 3  
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.29  E-value=4.5  Score=19.82  Aligned_cols=54  Identities=13%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC-CCCCCCCCC---HHHHHHHHHCCCEE
Q ss_conf             899999999873057880638889989874179-998330572---23889998658613
Q T0549             9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDP-SFDPRNWGH---GRLSQMVKKLDFLT   64 (84)
Q Consensus         9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~P-dFdpR~YG~---~kls~li~a~~~fe   64 (84)
                      -..+|..||.++.+..| +++.++-.||..+|| ..|+.++-+   ..|..+|++ +.|+
T Consensus         9 y~~MI~eAI~~l~er~G-sS~~aI~KyI~~~y~~~~~~~~~~~~l~~aLk~~v~~-G~L~   66 (92)
T d1usta_           9 YRELIIEGLTALKERKG-SSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEA-GDFE   66 (92)
T ss_dssp             HHHHHHHHHTTTTTTSC-EEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHT-TSEE
T ss_pred             HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf             99999999997489899-7999999999988767677889999999999999876-9678


No 4  
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.50  E-value=11  Score=17.62  Aligned_cols=56  Identities=18%  Similarity=0.206  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCC--CCHH-HH-HHHHHC
Q ss_conf             31578999999998730578806388899898741799983305--7223-88-999865
Q T0549             5 EKHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW--GHGR-LS-QMVKKL   60 (84)
Q Consensus         5 ~~~~l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdFdpR~Y--G~~k-ls-~li~a~   60 (84)
                      .+.+++...+...+...+=-+-...+.+-..|++..|+||+..+  |++. +- ..++|+
T Consensus        13 sdnp~v~~~r~i~d~~~~~f~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af   72 (192)
T d2fxta1          13 SENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAY   72 (192)
T ss_dssp             CSSHHHHHHHHHHTTTTCCBCCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             898205621020101244435478999999999878899989999999999999999999


No 5  
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}
Probab=34.42  E-value=12  Score=17.51  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             89999999987305788063888998987417999833057223889998658
Q T0549             9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLD   61 (84)
Q Consensus         9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~   61 (84)
                      -+..|+.++...++++|-.+...+.+.|.+..|.|-...-.-..+..+++.+|
T Consensus         7 ~ie~l~~~F~~yd~ddG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D   59 (92)
T d1a4pa_           7 AMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLD   59 (92)
T ss_dssp             HHHHHHHHHHHHHGGGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999998769999773999999999856533433278999999999981


No 6  
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.59  E-value=20  Score=16.16  Aligned_cols=39  Identities=13%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCC--CCCCCC
Q ss_conf             8999999998730578806388899898741799--983305
Q T0549             9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPS--FDPRNW   48 (84)
Q Consensus         9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~Pd--FdpR~Y   48 (84)
                      -.++|..||.++.+..| +++.++-.||..+||-  .++.++
T Consensus        10 y~~MI~eAI~~L~er~G-sS~~aI~KyI~~~y~~~~~~~~~f   50 (88)
T d1ussa_          10 YKEMILKSMPQLNDGKG-SSRIVLKKYVKDTFSSKLKTSSNF   50 (88)
T ss_dssp             HHHHHHHHHHHSCCTTS-BCHHHHHHHHHHHTTTTSCCSSTH
T ss_pred             HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             99999999997488899-689999999998777665452769


No 7  
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.24  E-value=26  Score=15.52  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCC
Q ss_conf             89999999987305788063888998987417999
Q T0549             9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSF   43 (84)
Q Consensus         9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdF   43 (84)
                      ...+|..||.+..+..| +++.++-.||..++|+-
T Consensus         5 y~~MI~eAI~al~er~G-sS~~AI~kyI~~~y~~~   38 (74)
T d1hsta_           5 YSEMIAAAIRAEKSRGG-SSRQSIQKYIKSHYKVG   38 (74)
T ss_dssp             HHHHHHHHHHTCCCSSC-EEHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCC
T ss_conf             79999999997499899-68999999999878881


No 8  
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=19.81  E-value=8.4  Score=18.29  Aligned_cols=26  Identities=38%  Similarity=0.707  Sum_probs=17.9

Q ss_pred             HCCCCCEEEHHHHHHHHHHCCCCCCCCC--CCCHHHH
Q ss_conf             3057880638889989874179998330--5722388
Q T0549            20 VARDSGWAELSAVGSYLAKNDPSFDPRN--WGHGRLS   54 (84)
Q Consensus        20 ~~dedGW~~l~~vG~~l~k~~PdFdpR~--YG~~kls   54 (84)
                      .-+-+||+.|         .-|..||-|  |||+-||
T Consensus        42 ~v~~~gwv~l---------eap~hdpangyygysvws   69 (74)
T d1mxga1          42 RVDSSGWVYL---------EAPPHDPANGYYGYSVWS   69 (74)
T ss_dssp             ECCTTSEEEE---------EECCEEGGGTEESEEEEE
T ss_pred             EECCCCEEEE---------ECCCCCCCCCCCCEEEEE
T ss_conf             4446876998---------469988776721247878


No 9  
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=19.07  E-value=36  Score=14.68  Aligned_cols=38  Identities=13%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC----CEEEEEEECC
Q ss_conf             999833057223889998658613664028997----2478875237
Q T0549            41 PSFDPRNWGHGRLSQMVKKLDFLTVQESRNGSK----LHSEIRLRHD   83 (84)
Q Consensus        41 PdFdpR~YG~~kls~li~a~~~fei~~~~~~~~----~~~~ir~r~k   83 (84)
                      +.||. +||+.-+.+    ++-|-++.-+..+.    ..++||+|-|
T Consensus       185 ~~~~~-~YG~~~~N~----mGtl~~R~vn~~~~~~~~~~vRiY~kpK  226 (269)
T d1fpn1_         185 DEQDQ-NYGTANTNN----MGSLCSRIVTEKHIHKVHIMTRIYHKAK  226 (269)
T ss_dssp             CTTSC-CCSTTTTCC----CCEEEEEECSCSCSCCEEEEEEEEEEEE
T ss_pred             CCCCC-CCCCCCCCC----CEEEEEEEECCCCCCCEEEEEEEEEECC
T ss_conf             79888-377345788----7579999814788872579999997413


No 10 
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} SCOP: d1bxea_ d1yl3s1 d1jzxl_ d1p86q_
Probab=15.75  E-value=36  Score=14.72  Aligned_cols=40  Identities=15%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCC-----------EEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9885315789999999987305788-----------0638889989874179998330572
Q T0549             1 MPHKEKHPLQDMFTSAIEAVARDSG-----------WAELSAVGSYLAKNDPSFDPRNWGH   50 (84)
Q Consensus         1 ~p~~~~~~l~~ll~~Ai~~~~dedG-----------W~~l~~vG~~l~k~~PdFdpR~YG~   50 (84)
                      ||++--..+..+|.+|+.-..+..|           |++-|          |-|.||..|-
T Consensus        39 ~~~k~a~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~g----------~r~~pra~GR   89 (110)
T d1i4ja_          39 TNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEG----------PAVLPRARGR   89 (110)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEE----------EEECSCSSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCC----------CCCCCCCCCC
T ss_conf             57752078999999999888763279821648888997799----------8505022344


Done!