Query T0549 CvR118A, , 84 residues
Match_columns 84
No_of_seqs 101 out of 205
Neff 5.7
Searched_HMMs 15564
Date Fri May 21 18:06:42 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0549.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0549.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uj8a1 a.159.5.1 (A:13-76) Ir 83.5 0.53 3.4E-05 25.1 3.4 44 25-68 3-46 (64)
2 d1uj8a1 a.159.5.1 (A:13-76) Ir 80.5 0.8 5.2E-05 24.1 3.4 45 25-69 3-47 (64)
3 d1usta_ a.4.5.13 (A:) Histone 47.3 4.5 0.00029 19.8 1.7 54 9-64 9-66 (92)
4 d2fxta1 d.17.4.13 (A:234-425) 40.5 11 0.00071 17.6 2.8 56 5-60 13-72 (192)
5 d1a4pa_ a.39.1.2 (A:) Calcycli 34.4 12 0.00074 17.5 2.1 53 9-61 7-59 (92)
6 d1ussa_ a.4.5.13 (A:) Histone 32.6 20 0.0013 16.2 3.9 39 9-48 10-50 (88)
7 d1hsta_ a.4.5.13 (A:) Histone 26.2 26 0.0017 15.5 6.7 34 9-43 5-38 (74)
8 d1mxga1 b.71.1.1 (A:362-435) B 19.8 8.4 0.00054 18.3 -0.8 26 20-54 42-69 (74)
9 d1fpn1_ b.121.4.1 (1:) Rhinovi 19.1 36 0.0023 14.7 2.8 38 41-83 185-226 (269)
10 d1i4ja_ d.55.1.1 (A:) Ribosoma 15.8 36 0.0023 14.7 1.6 40 1-50 39-89 (110)
No 1
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=83.51 E-value=0.53 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=39.1
Q ss_pred CEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf 80638889989874179998330572238899986586136640
Q T0549 25 GWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQES 68 (84)
Q Consensus 25 GW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~~fei~~~ 68 (84)
-|+..-.+.-.|.-++|+.||.+--|--|..+|-+++-|+=+-.
T Consensus 3 kW~D~~dIA~~L~e~~pd~DP~~irFtDL~~wV~~L~~F~Ddp~ 46 (64)
T d1uj8a1 3 KWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQ 46 (64)
T ss_dssp CTTCHHHHHHHHHHHSTTSCGGGCCHHHHHHHHHTSTTBCSCGG
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 50117889999987288999951123889998715778778835
No 2
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=80.51 E-value=0.8 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=39.7
Q ss_pred CEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
Q ss_conf 806388899898741799983305722388999865861366402
Q T0549 25 GWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQESR 69 (84)
Q Consensus 25 GW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~~fei~~~~ 69 (84)
-|...-.+.-.|.-.+|+.||.+--|--|...|-+++-|+=+-..
T Consensus 3 kW~D~~dIA~~L~e~~pdvDP~~irFtDL~~wV~~L~~F~Ddp~~ 47 (64)
T d1uj8a1 3 KWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQA 47 (64)
T ss_dssp CTTCHHHHHHHHHHHSTTSCGGGCCHHHHHHHHHTSTTBCSCGGG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCC
T ss_conf 661699999999987889897873159999999628787899664
No 3
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.29 E-value=4.5 Score=19.82 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC-CCCCCCCCC---HHHHHHHHHCCCEE
Q ss_conf 899999999873057880638889989874179-998330572---23889998658613
Q T0549 9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDP-SFDPRNWGH---GRLSQMVKKLDFLT 64 (84)
Q Consensus 9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~P-dFdpR~YG~---~kls~li~a~~~fe 64 (84)
-..+|..||.++.+..| +++.++-.||..+|| ..|+.++-+ ..|..+|++ +.|+
T Consensus 9 y~~MI~eAI~~l~er~G-sS~~aI~KyI~~~y~~~~~~~~~~~~l~~aLk~~v~~-G~L~ 66 (92)
T d1usta_ 9 YRELIIEGLTALKERKG-SSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEA-GDFE 66 (92)
T ss_dssp HHHHHHHHHTTTTTTSC-EEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHT-TSEE
T ss_pred HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf 99999999997489899-7999999999988767677889999999999999876-9678
No 4
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.50 E-value=11 Score=17.62 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCC--CCHH-HH-HHHHHC
Q ss_conf 31578999999998730578806388899898741799983305--7223-88-999865
Q T0549 5 EKHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW--GHGR-LS-QMVKKL 60 (84)
Q Consensus 5 ~~~~l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdFdpR~Y--G~~k-ls-~li~a~ 60 (84)
.+.+++...+...+...+=-+-...+.+-..|++..|+||+..+ |++. +- ..++|+
T Consensus 13 sdnp~v~~~r~i~d~~~~~f~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af 72 (192)
T d2fxta1 13 SENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAY 72 (192)
T ss_dssp CSSHHHHHHHHHHTTTTCCBCCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 898205621020101244435478999999999878899989999999999999999999
No 5
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}
Probab=34.42 E-value=12 Score=17.51 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 89999999987305788063888998987417999833057223889998658
Q T0549 9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLD 61 (84)
Q Consensus 9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdFdpR~YG~~kls~li~a~~ 61 (84)
-+..|+.++...++++|-.+...+.+.|.+..|.|-...-.-..+..+++.+|
T Consensus 7 ~ie~l~~~F~~yd~ddG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D 59 (92)
T d1a4pa_ 7 AMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLD 59 (92)
T ss_dssp HHHHHHHHHHHHHGGGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999998769999773999999999856533433278999999999981
No 6
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.59 E-value=20 Score=16.16 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCC--CCCCCC
Q ss_conf 8999999998730578806388899898741799--983305
Q T0549 9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPS--FDPRNW 48 (84)
Q Consensus 9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~Pd--FdpR~Y 48 (84)
-.++|..||.++.+..| +++.++-.||..+||- .++.++
T Consensus 10 y~~MI~eAI~~L~er~G-sS~~aI~KyI~~~y~~~~~~~~~f 50 (88)
T d1ussa_ 10 YKEMILKSMPQLNDGKG-SSRIVLKKYVKDTFSSKLKTSSNF 50 (88)
T ss_dssp HHHHHHHHHHHSCCTTS-BCHHHHHHHHHHHTTTTSCCSSTH
T ss_pred HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999999997488899-689999999998777665452769
No 7
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.24 E-value=26 Score=15.52 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCC
Q ss_conf 89999999987305788063888998987417999
Q T0549 9 LQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSF 43 (84)
Q Consensus 9 l~~ll~~Ai~~~~dedGW~~l~~vG~~l~k~~PdF 43 (84)
...+|..||.+..+..| +++.++-.||..++|+-
T Consensus 5 y~~MI~eAI~al~er~G-sS~~AI~kyI~~~y~~~ 38 (74)
T d1hsta_ 5 YSEMIAAAIRAEKSRGG-SSRQSIQKYIKSHYKVG 38 (74)
T ss_dssp HHHHHHHHHHTCCCSSC-EEHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCCC
T ss_conf 79999999997499899-68999999999878881
No 8
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=19.81 E-value=8.4 Score=18.29 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=17.9
Q ss_pred HCCCCCEEEHHHHHHHHHHCCCCCCCCC--CCCHHHH
Q ss_conf 3057880638889989874179998330--5722388
Q T0549 20 VARDSGWAELSAVGSYLAKNDPSFDPRN--WGHGRLS 54 (84)
Q Consensus 20 ~~dedGW~~l~~vG~~l~k~~PdFdpR~--YG~~kls 54 (84)
.-+-+||+.| .-|..||-| |||+-||
T Consensus 42 ~v~~~gwv~l---------eap~hdpangyygysvws 69 (74)
T d1mxga1 42 RVDSSGWVYL---------EAPPHDPANGYYGYSVWS 69 (74)
T ss_dssp ECCTTSEEEE---------EECCEEGGGTEESEEEEE
T ss_pred EECCCCEEEE---------ECCCCCCCCCCCCEEEEE
T ss_conf 4446876998---------469988776721247878
No 9
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=19.07 E-value=36 Score=14.68 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC----CEEEEEEECC
Q ss_conf 999833057223889998658613664028997----2478875237
Q T0549 41 PSFDPRNWGHGRLSQMVKKLDFLTVQESRNGSK----LHSEIRLRHD 83 (84)
Q Consensus 41 PdFdpR~YG~~kls~li~a~~~fei~~~~~~~~----~~~~ir~r~k 83 (84)
+.||. +||+.-+.+ ++-|-++.-+..+. ..++||+|-|
T Consensus 185 ~~~~~-~YG~~~~N~----mGtl~~R~vn~~~~~~~~~~vRiY~kpK 226 (269)
T d1fpn1_ 185 DEQDQ-NYGTANTNN----MGSLCSRIVTEKHIHKVHIMTRIYHKAK 226 (269)
T ss_dssp CTTSC-CCSTTTTCC----CCEEEEEECSCSCSCCEEEEEEEEEEEE
T ss_pred CCCCC-CCCCCCCCC----CEEEEEEEECCCCCCCEEEEEEEEEECC
T ss_conf 79888-377345788----7579999814788872579999997413
No 10
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} SCOP: d1bxea_ d1yl3s1 d1jzxl_ d1p86q_
Probab=15.75 E-value=36 Score=14.72 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC-----------EEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9885315789999999987305788-----------0638889989874179998330572
Q T0549 1 MPHKEKHPLQDMFTSAIEAVARDSG-----------WAELSAVGSYLAKNDPSFDPRNWGH 50 (84)
Q Consensus 1 ~p~~~~~~l~~ll~~Ai~~~~dedG-----------W~~l~~vG~~l~k~~PdFdpR~YG~ 50 (84)
||++--..+..+|.+|+.-..+..| |++-| |-|.||..|-
T Consensus 39 ~~~k~a~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~g----------~r~~pra~GR 89 (110)
T d1i4ja_ 39 TNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEG----------PAVLPRARGR 89 (110)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEE----------EEECSCSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCC----------CCCCCCCCCC
T ss_conf 57752078999999999888763279821648888997799----------8505022344
Done!