Query T0550 ZP_02066326.1, Bacteroides ovatus, 339 residues
Match_columns 339
No_of_seqs 142 out of 195
Neff 6.5
Searched_HMMs 22458
Date Fri May 21 18:04:46 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0550.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0550.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dlm_A Histone-lysine N-methyl 50.2 9.4 0.00042 15.7 4.7 34 215-251 81-114 (213)
2 1xbr_A Protein (T protein); co 34.5 17 0.00074 14.2 2.5 40 117-157 21-60 (184)
3 2x6u_A T-box transcription fac 29.9 16 0.00071 14.3 1.4 39 117-156 25-63 (203)
4 2z4t_A Beta-galactoside alpha- 29.0 20 0.00091 13.7 4.7 20 1-25 1-20 (514)
5 1iby_A Nitrosocyanin; RED copp 23.0 12 0.00051 15.2 -0.4 12 116-127 37-48 (112)
6 1y0g_A Protein YCEI; lipid bin 21.0 29 0.0013 12.7 8.0 20 1-20 1-20 (191)
7 2a2u_A Protein (alpha-2U-globu 21.0 24 0.0011 13.2 1.0 22 1-22 1-22 (181)
8 3b55_A Succinoglycan biosynthe 15.2 26 0.0012 13.0 0.0 19 1-20 1-19 (451)
9 2kie_A Inositol polyphosphate 14.9 26 0.0012 13.0 -0.0 26 309-336 84-109 (124)
10 3md7_A Beta-lactamase-like; ss 14.4 42 0.0019 11.8 1.4 13 76-88 77-89 (293)
No 1
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=50.19 E-value=9.4 Score=15.71 Aligned_cols=34 Identities=26% Similarity=0.578 Sum_probs=21.9
Q ss_pred ECCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 0772899630010346744453128999982585499
Q T0550 215 DNNSIFFYAGLINEDMDKDMRKKYKINVHFKEDGTLD 251 (339)
Q Consensus 215 d~nti~~~ag~~~~~~~~~~~~~y~i~~~f~~~~~~t 251 (339)
+.+.+-||+|++.|-....++..|-|.| |||--.
T Consensus 81 d~~~~~fY~GiIaE~p~~~n~~RYLVfF---DDG~a~ 114 (213)
T 3dlm_A 81 DGNQVWLYAGIVAETPNVKNKLRFLIFF---DDGYAS 114 (213)
T ss_dssp CSSCEEEEEEEEEECCCTTTTSCEEEEE---TTSCEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEE---ECCCCC
T ss_conf 5896578748997468657870399999---686020
No 2
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=34.48 E-value=17 Score=14.22 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCC
Q ss_conf 52587169657889999851567876613768999726887
Q T0550 117 ETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSY 157 (339)
Q Consensus 117 ~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvLPltI~~~s~~ 157 (339)
+.++=++|-+.=. .++|++.||+++..|.+=|.++-....
T Consensus 21 EMIiTk~GRrmFP-~l~~~vsGLdp~~~Y~v~l~~~~~D~~ 60 (184)
T 1xbr_A 21 EMIVTKNGRRMFP-VLKVSMSGLDPNAMYTVLLDFVAADNH 60 (184)
T ss_dssp EEECBTTCEECSS-CCEEEEECSCTTSEEEEEEEEEESSSC
T ss_pred EEEEECCCCCCCC-CEEEEEECCCCCCCEEEEEEEEECCCC
T ss_conf 7999058724587-218999789956447999999985573
No 3
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=29.87 E-value=16 Score=14.31 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCC
Q ss_conf 5258716965788999985156787661376899972688
Q T0550 117 ETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGS 156 (339)
Q Consensus 117 ~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvLPltI~~~s~ 156 (339)
+.++=++|-+.=. .++|++.||+++..|.+=|.|+-...
T Consensus 25 EMIVTk~GRrmFP-~l~~~vsGLdp~~~Y~v~l~~~~~D~ 63 (203)
T 2x6u_A 25 EMIITKAGRRMFP-SYKVKVTGLNPKTKYILLMDIVPADD 63 (203)
T ss_dssp EEECBSSCEECSS-CCEEEEESCCSSSEEEEEEEEEEEEE
T ss_pred EEEECCCCCCCCC-CEEEEEECCCCCCCEEEEEEEEECCC
T ss_conf 7999358713587-52899968886655689999898778
No 4
>2z4t_A Beta-galactoside alpha-2,6-sialyltransferase; GT-B fold, immunoglobulin-like beta-sandwich fold, glycosyltransferase; HET: LBT C5P; 2.50A {Photobacterium SP}
Probab=29.02 E-value=20 Score=13.66 Aligned_cols=20 Identities=55% Similarity=0.735 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9127899999999887510477776
Q T0550 1 MKNIYIYLSLLAVIVLGTACNNEWE 25 (339)
Q Consensus 1 MKki~~~i~ll~ll~~~ssC~dd~e 25 (339)
||++. ++.++++++|+++.+
T Consensus 1 ~~~~~-----~~~~~~l~acn~~~~ 20 (514)
T 2z4t_A 1 MKNFL-----LLTLILLTACNNSEE 20 (514)
T ss_dssp -------------------------
T ss_pred CCCEE-----EHHHHHHHHHCCCCH
T ss_conf 96153-----038899987068721
No 5
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=23.02 E-value=12 Score=15.17 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=7.4
Q ss_pred CCCEEEECCCEE
Q ss_conf 752587169657
Q T0550 116 PETVHIPAGSCV 127 (339)
Q Consensus 116 ~~tv~I~AGe~~ 127 (339)
|+++++|+|+.+
T Consensus 37 P~~i~V~~G~~V 48 (112)
T 1iby_A 37 PETLVVKKGDAV 48 (112)
T ss_dssp SCEEEEETTCEE
T ss_pred CCEEEECCCCEE
T ss_conf 998998799999
No 6
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=21.01 E-value=29 Score=12.74 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 91278999999998875104
Q T0550 1 MKNIYIYLSLLAVIVLGTAC 20 (339)
Q Consensus 1 MKki~~~i~ll~ll~~~ssC 20 (339)
|||+...+.++++++++.++
T Consensus 1 Mkk~~l~l~l~al~~~~~~a 20 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAGSA 20 (191)
T ss_dssp --------------------
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 92469999999999763240
No 7
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=20.98 E-value=24 Score=13.21 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9127899999999887510477
Q T0550 1 MKNIYIYLSLLAVIVLGTACNN 22 (339)
Q Consensus 1 MKki~~~i~ll~ll~~~ssC~d 22 (339)
||..+++++|++++++..+|+.
T Consensus 1 ~~~~~~~~~l~l~l~c~~~~~~ 22 (181)
T 2a2u_A 1 MKLLLLLLCLGLTLVCGHAEEA 22 (181)
T ss_dssp -------------------CCB
T ss_pred CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9731246699998674488778
No 8
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=15.20 E-value=26 Score=13.05 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 91278999999998875104
Q T0550 1 MKNIYIYLSLLAVIVLGTAC 20 (339)
Q Consensus 1 MKki~~~i~ll~ll~~~ssC 20 (339)
|||+.++.+ ++.+++|+.|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~ 19 (451)
T 3b55_A 1 MKKKIIIAI-VASAITMTHF 19 (451)
T ss_dssp --------------------
T ss_pred CCCEEHHHH-HHHHHHHHHH
T ss_conf 972300799-9999998662
No 9
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=14.91 E-value=26 Score=13.00 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCHHHC
Q ss_conf 3324787657789864167568882330
Q T0550 309 VIPIKYRVAGSMTLLRNINTQIPDEDQQ 336 (339)
Q Consensus 309 ~~~~~y~~~gt~~m~r~in~~ipd~d~~ 336 (339)
+.++|.||+|--+-||- .-||||||-
T Consensus 84 nsgcKiRvqGd~t~Erl--fEI~Dee~c 109 (124)
T 2kie_A 84 NSGCKIRVQGDWIRERR--FEIPDEEHC 109 (124)
T ss_dssp CSSEEEEEESSSCSCEE--EEECCHHHH
T ss_pred CCCEEEEEECCCCHHHH--EECCCHHHH
T ss_conf 88617998346356661--427876889
No 10
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus}
Probab=14.42 E-value=42 Score=11.79 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=4.7
Q ss_pred CEEEEEEECHHHH
Q ss_conf 4799998776999
Q T0550 76 DRDIHIAVDKDTL 88 (339)
Q Consensus 76 ditVti~vD~slL 88 (339)
+.++-|..-++..
T Consensus 77 ~~~iLiD~G~~~~ 89 (293)
T 3md7_A 77 NTVVVIDTGPDFR 89 (293)
T ss_dssp EEEEEECCCTTHH
T ss_pred CEEEEEECCCCHH
T ss_conf 8589998995289
Done!