Query T0550 ZP_02066326.1, Bacteroides ovatus, 339 residues
Match_columns 339
No_of_seqs 142 out of 195
Neff 6.5
Searched_HMMs 15564
Date Fri May 21 18:08:06 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0550.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0550.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xbra_ b.2.5.4 (A:) T domain 33.5 12 0.00076 14.1 2.5 40 117-157 21-60 (184)
2 d1h6fa_ b.2.5.4 (A:) T-box pro 29.0 10 0.00066 14.5 1.1 39 117-156 21-59 (184)
3 d2cuaa_ b.6.1.2 (A:) Cytochrom 19.8 21 0.0014 12.6 3.3 33 110-147 39-72 (122)
4 d1xjva1 b.40.4.3 (A:6-145) Pro 17.7 24 0.0015 12.3 4.4 46 111-156 2-49 (140)
5 d2dpka1 b.1.27.1 (A:370-502) S 13.5 31 0.002 11.6 4.8 74 60-153 20-95 (133)
6 d1ifra_ b.1.16.1 (A:) Lamin A/ 10.4 14 0.00092 13.6 -1.7 13 113-125 50-62 (113)
7 d1ikpa1 b.29.1.7 (A:2-251) Exo 9.7 41 0.0026 10.9 1.0 16 275-290 199-214 (250)
8 d2fwua1 b.1.27.1 (A:501-657) S 9.7 41 0.0026 10.9 6.3 71 60-150 20-92 (157)
9 g1y43.1 b.29.1.20 (A:1-32,B:3- 8.9 44 0.0028 10.7 1.6 27 102-129 69-95 (203)
10 d1cyxa_ b.6.1.2 (A:) Quinol ox 8.7 45 0.0029 10.6 2.3 37 116-157 26-65 (158)
No 1
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=33.48 E-value=12 Score=14.12 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCC
Q ss_conf 52587169657889999851567876613768999726887
Q T0550 117 ETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSY 157 (339)
Q Consensus 117 ~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvLPltI~~~s~~ 157 (339)
+.++=++|-+.=. .++|++.||+++..|.+=|.++-....
T Consensus 21 EMIITk~GRrmFP-~l~~~vsGLdp~~~Y~v~l~~~~~D~~ 60 (184)
T d1xbra_ 21 EMIVTKNGRRMFP-VLKVSMSGLDPNAMYTVLLDFVAADNH 60 (184)
T ss_dssp EEECBTTCEECSS-CCEEEEECSCTTSEEEEEEEEEESSSC
T ss_pred EEEEECCCCCCCC-CEEEEEECCCCCCCEEEEEEEEECCCC
T ss_conf 7999158734587-249999788957447999999985574
No 2
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.98 E-value=10 Score=14.49 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCC
Q ss_conf 5258716965788999985156787661376899972688
Q T0550 117 ETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGS 156 (339)
Q Consensus 117 ~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvLPltI~~~s~ 156 (339)
+.++=++|-+.=. .++|++.||+++..|.+=|.++-...
T Consensus 21 EMIvTk~GRrmFP-~l~~~vsGLdp~~~Y~v~l~~~~~D~ 59 (184)
T d1h6fa_ 21 EMVITKSGRRMFP-PFKVRCSGLDKKAKYILLMDIIAADD 59 (184)
T ss_dssp EEECCTTCBCCSS-CCEEEEESCCSSSEEEEEEEEEEEEE
T ss_pred EEEEECCCCCCCC-EEEEEEECCCCCCCEEEEEEEEECCC
T ss_conf 7999269821076-16999934697764689999998747
No 3
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}
Probab=19.75 E-value=21 Score=12.58 Aligned_cols=33 Identities=18% Similarity=0.577 Sum_probs=17.3
Q ss_pred CCCCCC-CCCEEEECCCEEEEEEEEEEECCCCCCCEEEE
Q ss_conf 101005-75258716965788999985156787661376
Q T0550 110 EDKYEF-PETVHIPAGSCVELLNIDFNLQDIDMLEKWVL 147 (339)
Q Consensus 110 ~~~Ysl-~~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvL 147 (339)
+..|.| |+++++|+|+ +|+|++..-|....+.+
T Consensus 39 a~~~~f~p~~l~vp~G~-----~V~~~lts~DV~H~f~i 72 (122)
T d2cuaa_ 39 AFAFGYQPNPIEVPQGA-----EIVFKITSPDVIHGFHV 72 (122)
T ss_dssp EETTEEESSSEEEETTS-----EEEEEEEBSSSCEEEEE
T ss_pred EEECCCCCCEEEEECCC-----EEEEEEECCCCCCEEEE
T ss_conf 99652268889994899-----99999993883221576
No 4
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.74 E-value=24 Score=12.30 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCCCCCCCEEEECCCEEEE--EEEEEEECCCCCCCEEEEEEEEEECCC
Q ss_conf 0100575258716965788--999985156787661376899972688
Q T0550 111 DKYEFPETVHIPAGSCVEL--LNIDFNLQDIDMLEKWVLPLTIVDDGS 156 (339)
Q Consensus 111 ~~Ysl~~tv~I~AGe~~s~--i~I~f~~~~Ld~~~~YvLPltI~~~s~ 156 (339)
..|+...-..+++|..+.. +-+.+..-.....+.|++-|+|+|.|.
T Consensus 2 ~~Y~Y~~la~l~~~~~vnv~gVV~~~~~p~~s~g~D~~~tl~I~D~S~ 49 (140)
T d1xjva1 2 TNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN 49 (140)
T ss_dssp CCCCCCCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC
T ss_pred CCCEEEEHHHCCCCCEEEEEEEEEECCCCEECCCCEEEEEEEEEECCC
T ss_conf 861672788845798799999996647877769984999999996899
No 5
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} SCOP: d2fwsa1
Probab=13.55 E-value=31 Score=11.64 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-CCEEEECCCEEEEEEEEEE-EC
Q ss_conf 799999972076677647999987769998887764365325735688661010057-5258716965788999985-15
Q T0550 60 TYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYRPELWYTEMEEDKYEFP-ETVHIPAGSCVELLNIDFN-LQ 137 (339)
Q Consensus 60 t~~l~v~vsgs~~~~~ditVti~vD~slL~~YN~~~~~~~~~~t~y~~LP~~~Ysl~-~tv~I~AGe~~s~i~I~f~-~~ 137 (339)
+..+.|..++. .....++|.+...+ ++ ..+...|... .++.+++|+....+.|.+. -+
T Consensus 20 ~v~i~V~R~~g-~~~~~v~V~~~t~~----------------gt---A~~~~D~~~~~g~v~F~~ge~~k~i~I~i~~D~ 79 (133)
T d2dpka1 20 TVALTIIRRGG-DLTNTVFVDFRTED----------------GT---ANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDD 79 (133)
T ss_dssp EEEEEEEEESS-CTTSCEEEEEEEEE----------------SS---SCBTTTBCCCEEEEEECTTCCEEEEEEEBCCCS
T ss_pred EEEEEEEECCC-CCCCEEEEEEEEEC----------------CC---CCCCCCCCCCCCEEEECCCCEEEEEEEEEEECC
T ss_conf 89998886578-97875999888723----------------97---656763401464088659874899888886578
Q ss_pred CCCCCCEEEEEEEEEE
Q ss_conf 6787661376899972
Q T0550 138 DIDMLEKWVLPLTIVD 153 (339)
Q Consensus 138 ~Ld~~~~YvLPltI~~ 153 (339)
..+.++.+.|=|.=..
T Consensus 80 ~~E~~E~f~v~L~~~~ 95 (133)
T d2dpka1 80 IFEEDENFLVHLSNVK 95 (133)
T ss_dssp SCCCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEECCC
T ss_conf 6678717999983633
No 6
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.40 E-value=14 Score=13.65 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=4.7
Q ss_pred CCCCCCEEEECCC
Q ss_conf 0057525871696
Q T0550 113 YEFPETVHIPAGS 125 (339)
Q Consensus 113 Ysl~~tv~I~AGe 125 (339)
|.||+..+|++|+
T Consensus 50 f~fP~~~~l~pg~ 62 (113)
T d1ifra_ 50 YRFPPKFTLKAGQ 62 (113)
T ss_dssp EECCSSCEECTTC
T ss_pred EEECCCCEECCCC
T ss_conf 9969997988998
No 7
>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.73 E-value=41 Score=10.88 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=10.0
Q ss_pred ECCCCCCCCCCCEEEE
Q ss_conf 0343234100240189
Q T0550 275 SVMDATRPYLERRYVQ 290 (339)
Q Consensus 275 ~~~~~~~~y~~~~~~~ 290 (339)
..||++.+|+-+.-.+
T Consensus 199 ~~~D~vYNYl~QQ~C~ 214 (250)
T d1ikpa1 199 DQLDGVYNYLAQQRCN 214 (250)
T ss_dssp GGGTTHHHHHHSSCCC
T ss_pred EEHHHHHHHHHHHCCC
T ss_conf 4036888888771367
No 8
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=9.70 E-value=41 Score=10.87 Aligned_cols=71 Identities=4% Similarity=0.053 Sum_probs=42.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCEEEECCCEEEEEEEEEEECC
Q ss_conf 79999997207667764799998776999888776436532573568866101005-75258716965788999985156
Q T0550 60 TYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYRPELWYTEMEEDKYEF-PETVHIPAGSCVELLNIDFNLQD 138 (339)
Q Consensus 60 t~~l~v~vsgs~~~~~ditVti~vD~slL~~YN~~~~~~~~~~t~y~~LP~~~Ysl-~~tv~I~AGe~~s~i~I~f~~~~ 138 (339)
...+.|..+ ......++|.+..-+. + +. .+..-|.. +.++++.+|+....+.|.+.-+.
T Consensus 20 ~~~v~V~R~--~g~~g~v~V~~~t~~g----------------t-A~-~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~~D~ 79 (157)
T d2fwua1 20 IMEVKVLRT--SGARGNVIVPYKTIEG----------------T-AR-GGGEDFEDTCGELEFQNDEIVKTISVKVIDDE 79 (157)
T ss_dssp EEEEEEECC--TTCSSCEEEEEEEECT----------------T-SC-TTTTSEECCEEEEEECSSCCCCEEEEEECCCS
T ss_pred EEEEEEEEE--CCCCCEEEEEEEEECC----------------C-CC-CCCCCCCCCCCCEEECCCCEEEEEEEEECCCC
T ss_conf 999999984--7998669999998489----------------7-57-76887451567589779953899972213788
Q ss_pred -CCCCCEEEEEEE
Q ss_conf -787661376899
Q T0550 139 -IDMLEKWVLPLT 150 (339)
Q Consensus 139 -Ld~~~~YvLPlt 150 (339)
.+.++.+.|=|+
T Consensus 80 ~~E~~E~F~v~L~ 92 (157)
T d2fwua1 80 EYEKNKTFFLEIG 92 (157)
T ss_dssp SCCCCEEEEEEEC
T ss_pred CCCCCEEEEEEEE
T ss_conf 7468669999994
No 9
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus niger [TaxId: 5061]}
Probab=8.85 E-value=44 Score=10.67 Aligned_cols=27 Identities=22% Similarity=0.695 Sum_probs=22.1
Q ss_pred CCEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 7356886610100575258716965788
Q T0550 102 ELWYTEMEEDKYEFPETVHIPAGSCVEL 129 (339)
Q Consensus 102 ~t~y~~LP~~~Ysl~~tv~I~AGe~~s~ 129 (339)
+.+|+.+|+..|.|+ .+.|++|+....
T Consensus 69 ~AW~EwyP~~a~~~~-~~~v~~GD~i~~ 95 (203)
T g1y43.1 69 DAWYEWYPDYAYDFS-DITISEGDSIKV 95 (203)
T ss_dssp EEEEEEETSCCEEET-TCCCCTTCEEEE
T ss_pred EEEEEECCCCCCCCC-CCCCCCCCEEEE
T ss_conf 899998477765725-652889999999
No 10
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=8.70 E-value=45 Score=10.63 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCEEEECCCEEEEEEEEEEECCCCCCCEEEEE---EEEEECCCC
Q ss_conf 752587169657889999851567876613768---999726887
Q T0550 116 PETVHIPAGSCVELLNIDFNLQDIDMLEKWVLP---LTIVDDGSY 157 (339)
Q Consensus 116 ~~tv~I~AGe~~s~i~I~f~~~~Ld~~~~YvLP---ltI~~~s~~ 157 (339)
.+.++||+|. ||+|.+...|--..+.+| +++--.||.
T Consensus 26 ~n~l~lP~g~-----pV~~~ltS~DViHsF~vP~l~~k~daiPG~ 65 (158)
T d1cyxa_ 26 VNEIAFPANT-----PVYFKVTSNSVMHSFFIPRLGSQIYAMAGM 65 (158)
T ss_dssp ESEEEEETTS-----CEEEEEEESSSCEEEEEGGGTEEEEECTTC
T ss_pred EEEEEEECCC-----EEEEEEECCCCCHHHHHHHCCEEECCCCCC
T ss_conf 2128960797-----689999759841045664100012027986
Done!