Query T0551 SpR104 , , 74 residues
Match_columns 74
No_of_seqs 84 out of 86
Neff 3.0
Searched_HMMs 22458
Date Fri May 21 18:04:31 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0551.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0551.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 80.1 0.37 1.7E-05 27.7 0.7 45 27-72 9-57 (66)
2 3l6w_A Hemocyanin 1; cupredoxi 51.2 11 0.00049 19.2 3.3 67 6-72 344-422 (491)
3 2ipx_A RRNA 2'-O-methyltransfe 37.3 5.9 0.00026 20.8 0.2 27 31-57 40-66 (233)
4 1ble_A Fructose permease; phos 27.1 25 0.0011 17.1 2.0 37 26-72 100-136 (163)
5 1vsq_C Mannose-specific phosph 24.5 32 0.0014 16.5 2.2 26 47-72 113-138 (165)
6 3eye_A PTS system N-acetylgala 20.9 38 0.0017 16.1 1.9 27 46-72 114-140 (168)
7 1nrz_A PTS system, sorbose-spe 20.1 39 0.0018 16.0 1.9 26 47-72 110-135 (164)
8 2d2a_A SUFA protein; iron-sulf 18.2 46 0.0021 15.6 1.9 24 48-72 33-56 (145)
9 1ub1_A MECP2, attachment regio 17.2 56 0.0025 15.1 2.1 33 21-53 38-70 (133)
10 1d9n_A Methyl-CPG-binding prot 16.6 54 0.0024 15.2 1.9 41 13-53 3-43 (75)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=80.07 E-value=0.37 Score=27.68 Aligned_cols=45 Identities=27% Similarity=0.497 Sum_probs=31.2
Q ss_pred EEEEEEEECCCCCCCCCCCCCC--CCH-HCC-CCCCCCHHHHHHHHHHHC
Q ss_conf 6654663188998610235784--401-102-765406889999999845
Q T0551 27 KEINRVSFNGAPAKFDIRAWSP--DHT-KMG-KGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 27 KELNlvSWNg~~pKyDIR~W~p--dh~-kMg-KGiTLt~eE~~~L~~~L~ 72 (74)
+-+..-.|+|. +-.|||.|-. |.+ +-| |||+||.|+...|++.+.
T Consensus 9 rrvtV~~FkG~-~~vdIReyY~dkdGe~~PgKKGIsL~~eqw~~l~~~~~ 57 (66)
T 1pcf_A 9 RYVSVRDFKGK-VLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQIS 57 (66)
T ss_dssp EEEEEEEETTE-EEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEECCC-EEEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 79999986797-89998999987998697767648867999999998799
No 2
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata}
Probab=51.21 E-value=11 Score=19.21 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=49.2
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC------------CCCCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 430345433442258999735665466318899861023------------5784401102765406889999999845
Q T0551 6 EFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIR------------AWSPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 6 e~~yEI~~~igvLS~~~kGW~KELNlvSWNg~~pKyDIR------------~W~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
-++|||.+.+-.|.-....++-++.+.+.||.+--=++- +-+-.-.-++|++.|+..|...|..++.
T Consensus 344 ~~~~~it~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (491)
T 3l6w_A 344 LYRFDITETVHNLNLTDDHVKFRFDLKKYDHTELDASVLPAPIIVRRPNNAVFDIIEIPIGKDVNLPPKVVVKRGTKIM 422 (491)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1100179999984999766489999994189578654589980897279776666651345688899899986898885
No 3
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=37.33 E-value=5.9 Score=20.78 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=22.0
Q ss_pred EEEECCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 663188998610235784401102765
Q T0551 31 RVSFNGAPAKFDIRAWSPDHTKMGKGI 57 (74)
Q Consensus 31 lvSWNg~~pKyDIR~W~pdh~kMgKGi 57 (74)
++++.+++-+.--|.|+|-++|.+-.|
T Consensus 40 ~~~~~~~~~~~e~r~w~p~rsklaaai 66 (233)
T 2ipx_A 40 RVSISEGDDKIEYRAWNPFRSKLAAAI 66 (233)
T ss_dssp EEEEC----CEEEEECCTTTCHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCHHHHHHHH
T ss_conf 788606888567777776255999999
No 4
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=27.08 E-value=25 Score=17.11 Aligned_cols=37 Identities=8% Similarity=0.264 Sum_probs=27.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 56654663188998610235784401102765406889999999845
Q T0551 26 TKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 26 ~KELNlvSWNg~~pKyDIR~W~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
-++||+=.=. -.|+..+.++.|.|+.+|+.+|+++..
T Consensus 100 i~~vNiG~~~----------~~~g~~~i~~~v~l~~ee~~~lk~l~~ 136 (163)
T 1ble_A 100 IKTVNVGGMR----------FENHRRQITKSVSVTEQDIKAFETLSD 136 (163)
T ss_dssp CCEEEEEEBC----------CCTTSEECSSSBEECHHHHHHHHHHHH
T ss_pred CCEEEECCCC----------CCCCCEEEECCEEECHHHHHHHHHHHH
T ss_conf 8889989983----------789977985755018999999999997
No 5
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=24.50 E-value=32 Score=16.51 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 84401102765406889999999845
Q T0551 47 SPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 47 ~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
.|+..+.++.|.|+.||+.+|+++..
T Consensus 113 ~~g~~~i~~~v~l~~ee~~~lk~l~~ 138 (165)
T 1vsq_C 113 RQGKTQVNNAVSVDEKDIEAFKKLNA 138 (165)
T ss_dssp CTTSEECSSSCEECHHHHHHHHHHHH
T ss_pred CCCCEEEECCEECCHHHHHHHHHHHH
T ss_conf 89976981316139999999999997
No 6
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157}
Probab=20.89 E-value=38 Score=16.11 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 784401102765406889999999845
Q T0551 46 WSPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 46 W~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
..++....++.+.|+.||+.+|+++..
T Consensus 114 ~~~g~~~i~~~v~l~~ee~~~lk~l~~ 140 (168)
T 3eye_A 114 FSEGKKQISSKVYVDDQDLTDLRFIKQ 140 (168)
T ss_dssp CCTTCEEEETTEEECHHHHHHHHHHHH
T ss_pred CCCCCEEEECCEECCHHHHHHHHHHHH
T ss_conf 789967982536049999999999997
No 7
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=20.10 E-value=39 Score=16.02 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 84401102765406889999999845
Q T0551 47 SPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 47 ~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
.|+..+.++.+.++.+|+.+|+++..
T Consensus 110 ~~g~~~i~~~v~l~~ee~~~lk~l~~ 135 (164)
T 1nrz_A 110 RPGKKQLTKAVSLDPQDIQAFRELDK 135 (164)
T ss_dssp CTTCEEEETTEEECHHHHHHHHHHHH
T ss_pred CCCCEEEECCEECCHHHHHHHHHHHH
T ss_conf 89977973645019999999999997
No 8
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=18.19 E-value=46 Score=15.62 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.2
Q ss_pred CCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 4401102765406889999999845
Q T0551 48 PDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 48 pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
|. ..-.+|||||..-+..|++++.
T Consensus 33 P~-~~~~~~ItIT~~A~~~i~~ll~ 56 (145)
T 2d2a_A 33 PQ-DFAWQGLTLTPAAAIHIRELVA 56 (145)
T ss_dssp CC-CCCCCCCEECHHHHHHHHHHHH
T ss_pred CC-CCCCCCEEECHHHHHHHHHHHH
T ss_conf 34-2668767999999999999997
No 9
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=17.17 E-value=56 Score=15.14 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=26.4
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHC
Q ss_conf 999735665466318899861023578440110
Q T0551 21 NEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKM 53 (74)
Q Consensus 21 ~~kGW~KELNlvSWNg~~pKyDIR~W~pdh~kM 53 (74)
-+.||++|+-.=.-+...-++|+-=++|+-.++
T Consensus 38 Lp~GWkre~~~R~~G~s~gk~Dvyy~sP~Gkk~ 70 (133)
T 1ub1_A 38 LPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 70 (133)
T ss_dssp BTTBCEEEEEECCCSSSCCSEEEEEECTTSCEE
T ss_pred CCCCCEEEEEEECCCCCCCCEEEEEECCCCCEE
T ss_conf 989877889984689888723589989999767
No 10
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=16.60 E-value=54 Score=15.22 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=28.1
Q ss_pred EEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHC
Q ss_conf 33442258999735665466318899861023578440110
Q T0551 13 EHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKM 53 (74)
Q Consensus 13 ~~igvLS~~~kGW~KELNlvSWNg~~pKyDIR~W~pdh~kM 53 (74)
++.-..+.-+.||++|+-.-.=....-|+|+==.+|+-.++
T Consensus 3 e~~~~~p~LP~GW~re~~~R~~G~s~gk~DvyY~sP~Gkk~ 43 (75)
T 1d9n_A 3 EDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRI 43 (75)
T ss_dssp SCCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEE
T ss_conf 54453889999858999986589989820599999999878
Done!