Query T0551 SpR104 , , 74 residues
Match_columns 74
No_of_seqs 84 out of 86
Neff 3.0
Searched_HMMs 15564
Date Fri May 21 18:06:48 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0551.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0551.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 78.1 0.37 2.4E-05 26.8 1.0 45 27-72 9-57 (66)
2 d1pcfa_ d.18.1.1 (A:) Transcri 73.9 0.49 3.1E-05 26.1 0.7 45 27-72 9-57 (66)
3 d1blea_ c.38.1.1 (A:) Fructose 25.2 20 0.0013 16.8 2.0 26 47-72 110-135 (161)
4 d1nrza_ c.38.1.1 (A:) Sorbose 21.4 23 0.0015 16.4 1.7 27 46-72 109-135 (163)
5 d1ig4a_ d.10.1.3 (A:) Methylat 15.2 49 0.0032 14.5 2.7 41 13-53 3-43 (75)
6 d1nrza_ c.38.1.1 (A:) Sorbose 15.1 43 0.0028 14.9 1.9 27 46-72 109-135 (163)
7 d1khda1 a.46.2.1 (A:12-80) Ant 12.9 42 0.0027 14.9 1.4 27 45-71 1-27 (69)
8 d1ji8a_ d.203.1.1 (A:) DsrC, t 11.8 62 0.004 13.9 2.0 29 41-69 25-58 (111)
9 d1g8aa_ c.66.1.3 (A:) Fibrilla 11.6 21 0.0013 16.7 -0.5 24 31-58 40-63 (227)
10 d1qk9a_ d.10.1.3 (A:) Methyl-C 11.2 49 0.0031 14.6 1.3 33 21-53 24-56 (92)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.09 E-value=0.37 Score=26.79 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=31.1
Q ss_pred EEEEEEEECCCCCCCCCCCCCCC-CHHC--C-CCCCCCHHHHHHHHHHHC
Q ss_conf 66546631889986102357844-0110--2-765406889999999845
Q T0551 27 KEINRVSFNGAPAKFDIRAWSPD-HTKM--G-KGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 27 KELNlvSWNg~~pKyDIR~W~pd-h~kM--g-KGiTLt~eE~~~L~~~L~ 72 (74)
+-+..-.|.|. +=.|||.|-.| .-+| | |||+||.++...|++.+.
T Consensus 9 rrvtV~~FkG~-~~vdIReyY~dkdGe~~PgkKGIsL~~~qw~~l~~~~~ 57 (66)
T d1pcfa_ 9 RYVSVRDFKGK-VLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQIS 57 (66)
T ss_dssp EEEEEEEETTE-EEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEECCC-EEEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 79999887795-89998999987998797777738877999999999799
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.94 E-value=0.49 Score=26.11 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=31.6
Q ss_pred EEEEEEEECCCCCCCCCCCCCCC--C-HHCC-CCCCCCHHHHHHHHHHHC
Q ss_conf 66546631889986102357844--0-1102-765406889999999845
Q T0551 27 KEINRVSFNGAPAKFDIRAWSPD--H-TKMG-KGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 27 KELNlvSWNg~~pKyDIR~W~pd--h-~kMg-KGiTLt~eE~~~L~~~L~ 72 (74)
+-+..-.|+|. +=.|||.|--| . .+-| |||+||.++...|++.+.
T Consensus 9 rrvtv~~fkG~-~~v~IReyY~dk~ge~~P~kKGIsL~~~qw~~l~~~i~ 57 (66)
T d1pcfa_ 9 RYVSVRDFKGK-VLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQIS 57 (66)
T ss_dssp EEEEEEEETTE-EEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEECCC-EEEEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 47888742492-76533235466988647875640208899999998889
No 3
>d1blea_ c.38.1.1 (A:) Fructose permease, subunit IIb {Bacillus subtilis [TaxId: 1423]}
Probab=25.20 E-value=20 Score=16.79 Aligned_cols=26 Identities=4% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 84401102765406889999999845
Q T0551 47 SPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 47 ~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
.|+..+.++.|.|+.+|+.+|+++..
T Consensus 110 ~~g~~~v~~~v~l~~ee~~~lk~l~~ 135 (161)
T d1blea_ 110 ENHRRQITKSVSVTEQDIKAFETLSD 135 (161)
T ss_dssp CTTSEECSSSBEECHHHHHHHHHHHH
T ss_pred CCCCEEEECCEEECHHHHHHHHHHHH
T ss_conf 89977985645008999999999997
No 4
>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor {Klebsiella pneumoniae [TaxId: 573]}
Probab=21.45 E-value=23 Score=16.44 Aligned_cols=27 Identities=22% Similarity=0.569 Sum_probs=23.2
Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 784401102765406889999999845
Q T0551 46 WSPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 46 W~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
..|+..+.++.+.++.||+.+|+++..
T Consensus 109 ~~~g~~~i~~~v~l~~ee~~~lk~l~~ 135 (163)
T d1nrza_ 109 WRPGKKQLTKAVSLDPQDIQAFRELDK 135 (163)
T ss_dssp CCTTCEEEETTEEECHHHHHHHHHHHH
T ss_pred CCCCCEEEECCEEECHHHHHHHHHHHH
T ss_conf 789987972645008999999999997
No 5
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.23 E-value=49 Score=14.53 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=28.6
Q ss_pred EEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHC
Q ss_conf 33442258999735665466318899861023578440110
Q T0551 13 EHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKM 53 (74)
Q Consensus 13 ~~igvLS~~~kGW~KELNlvSWNg~~pKyDIR~W~pdh~kM 53 (74)
++.-..+.-+.||++|+-.=.=+...-++|+==-+|+-.++
T Consensus 3 e~~~~~p~LP~GW~re~~~Rk~g~~~gk~DvyY~sP~Gkk~ 43 (75)
T d1ig4a_ 3 EDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRI 43 (75)
T ss_dssp CCEEECTTTCTTCEEEEECCCSSSSTTCCEEEEECSSSCEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEE
T ss_conf 54453889999838999987689998712589999999777
No 6
>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor {Klebsiella pneumoniae [TaxId: 573]} SCOP: d1blea_
Probab=15.12 E-value=43 Score=14.86 Aligned_cols=27 Identities=22% Similarity=0.569 Sum_probs=22.9
Q ss_pred CCCCCHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 784401102765406889999999845
Q T0551 46 WSPDHTKMGKGITLSNEEFQTMVDAFK 72 (74)
Q Consensus 46 W~pdh~kMgKGiTLt~eE~~~L~~~L~ 72 (74)
..++..+.++.|.++.+|..+|+++..
T Consensus 109 ~~~g~~~i~~~v~l~~ed~~~lk~L~~ 135 (163)
T d1nrza_ 109 WRPGKKQLTKAVSLDPQDIQAFRELDK 135 (163)
T ss_dssp CCTTCEEEETTEEECHHHHHHHHHHHH
T ss_pred CCCCCEECCCCEECCHHHHHHHHHHHH
T ss_conf 688856115504459899999999996
No 7
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=12.93 E-value=42 Score=14.94 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.9
Q ss_pred CCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 578440110276540688999999984
Q T0551 45 AWSPDHTKMGKGITLSNEEFQTMVDAF 71 (74)
Q Consensus 45 ~W~pdh~kMgKGiTLt~eE~~~L~~~L 71 (74)
+|.|=-+|.-.|-.||.+|+..+.+.+
T Consensus 1 t~~~il~kl~~g~~Ls~ee~~~~~~~i 27 (69)
T d1khda1 1 THQPILEKLFKSQSMTQEESHQLFAAI 27 (69)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 989999999859997999999999999
No 8
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=11.79 E-value=62 Score=13.94 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=21.0
Q ss_pred CCCCCCCCCCHHC----CCCC-CCCHHHHHHHHH
Q ss_conf 1023578440110----2765-406889999999
Q T0551 41 FDIRAWSPDHTKM----GKGI-TLSNEEFQTMVD 69 (74)
Q Consensus 41 yDIR~W~pdh~kM----gKGi-TLt~eE~~~L~~ 69 (74)
-|..+|+++-.+. -.|| +||.+-...+.-
T Consensus 25 ~~~~dW~e~vA~~lA~~~eGi~~Lt~~Hw~vI~~ 58 (111)
T d1ji8a_ 25 QNPEDWDEKVAEWLARELEGIQKMTEEHWKLVKY 58 (111)
T ss_dssp CCGGGCCHHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9946569999999997204831057999999999
No 9
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.61 E-value=21 Score=16.72 Aligned_cols=24 Identities=29% Similarity=0.851 Sum_probs=17.0
Q ss_pred EEEECCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 6631889986102357844011027654
Q T0551 31 RVSFNGAPAKFDIRAWSPDHTKMGKGIT 58 (74)
Q Consensus 31 lvSWNg~~pKyDIR~W~pdh~kMgKGiT 58 (74)
++++++. .-|.|+|-++|.+-.|.
T Consensus 40 ~~~~~~~----e~R~w~p~rSKlaa~i~ 63 (227)
T d1g8aa_ 40 VIKWEGE----EYRIWNPNRSKLGAAIM 63 (227)
T ss_dssp EEEETTE----EEEECCTTTCHHHHHHH
T ss_pred EEECCCE----EEEEECCCCCHHHHHHH
T ss_conf 8971881----68997898557899987
No 10
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=49 Score=14.56 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=25.1
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHC
Q ss_conf 999735665466318899861023578440110
Q T0551 21 NEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKM 53 (74)
Q Consensus 21 ~~kGW~KELNlvSWNg~~pKyDIR~W~pdh~kM 53 (74)
-+.||++|+-.-+=+...-|+|+-=.+|+-.++
T Consensus 24 Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP~Gkk~ 56 (92)
T d1qk9a_ 24 LPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 56 (92)
T ss_dssp SSSSCEEEECCCCCSSSCSCCCEEEEETTTEEE
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEEECCCCCEE
T ss_conf 989988999983588877506699989999734
Done!