Query T0552 BtR376, , 122 residues
Match_columns 122
No_of_seqs 48 out of 50
Neff 2.9
Searched_HMMs 22458
Date Fri May 21 18:04:38 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0552.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0552.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pko_A Myelin oligodendrocyte 83.1 2.7 0.00012 22.0 6.9 93 10-105 4-110 (139)
2 3idu_A Uncharacterized protein 77.1 4.2 0.00019 20.8 8.0 84 12-105 18-101 (127)
3 1nez_G T-cell surface glycopro 73.7 4.6 0.0002 20.6 4.9 41 14-58 6-46 (128)
4 1qz1_A Neural cell adhesion mo 73.7 4 0.00018 20.9 4.6 42 12-57 2-43 (291)
5 1v8h_A Sulfur oxidation protei 64.1 8.2 0.00037 19.0 11.3 92 12-113 1-104 (107)
6 2oi9_B V alpha, T cell recepto 63.4 5 0.00022 20.3 3.3 44 15-62 3-46 (113)
7 2ckn_A Basic fibroblast growth 62.1 9 0.0004 18.8 7.2 81 9-107 6-87 (95)
8 1sz7_A BET3 homolog, trafficki 58.8 7.6 0.00034 19.2 3.5 29 11-39 151-179 (200)
9 1dlf_L Anti-dansyl immunoglobu 57.5 8.1 0.00036 19.0 3.5 44 19-62 8-52 (113)
10 2hp4_A T-cell surface glycopro 52.1 13 0.00059 17.7 4.9 41 15-58 3-43 (114)
11 2oi9_C V beta, T cell receptor 51.6 13 0.0006 17.7 4.4 40 15-59 4-43 (121)
12 3c60_A TCR YAE62 alpha chain; 51.4 6.4 0.00028 19.7 2.2 42 15-60 3-44 (199)
13 3dmm_C T-cell surface glycopro 51.3 14 0.00061 17.7 5.6 80 15-98 12-107 (166)
14 3bis_A Programmed cell death 1 50.4 14 0.00063 17.6 9.8 94 12-106 1-106 (222)
15 1ol0_A Immunoglobulin G; camel 49.9 12 0.00055 17.9 3.4 39 21-62 9-48 (121)
16 3eak_A NBBCII10-FGLA; antibody 48.3 15 0.00067 17.4 4.4 41 22-62 10-51 (137)
17 2oxg_Z SOXZ protein; immunoglo 47.2 16 0.0007 17.3 9.3 85 18-112 8-104 (108)
18 1zxq_A ICAM-2, intercellular a 46.8 11 0.00047 18.3 2.7 25 12-36 2-26 (192)
19 1ub6_H Antibody 19G2, alpha ch 46.3 12 0.00051 18.1 2.8 35 23-60 10-45 (208)
20 2z35_A T-cell receptor alpha-c 45.9 16 0.00073 17.1 3.8 44 15-62 3-46 (112)
21 3bae_H WO2 IGG2A FAB fragment 43.5 18 0.0008 16.9 3.6 91 21-112 9-124 (228)
22 2nw2_A ELS4 TCR alpha chain; T 43.2 18 0.00081 16.9 4.8 43 6-61 2-44 (200)
23 1qgc_4 Protein (inmunoglobulin 41.5 19 0.00086 16.7 3.6 34 24-58 13-47 (438)
24 1dee_B IGM RF 2A2; FAB-IBP com 41.4 19 0.00086 16.7 4.3 38 22-62 10-48 (223)
25 1lp9_E T-cell receptor alpha c 41.3 19 0.00087 16.7 4.2 41 18-62 7-47 (194)
26 3bik_B Programmed cell death p 40.7 20 0.00088 16.6 8.3 43 15-60 12-54 (134)
27 1bec_A 14.3.D T cell antigen r 39.8 20 0.00091 16.6 5.2 41 15-61 2-43 (238)
28 1x9q_A SCFV, 4M5.3 anti-fluore 39.8 20 0.0009 16.6 3.3 36 23-58 26-62 (268)
29 3bp6_A Programmed cell death p 38.6 21 0.00096 16.4 8.3 44 14-61 1-45 (117)
30 2wra_A Lectin, BCLA; sugar bin 37.9 17 0.00077 17.0 2.6 26 78-103 18-43 (128)
31 1epf_A NCAM, protein (neural c 37.3 22 0.001 16.3 10.3 82 13-107 3-89 (191)
32 3mbe_C I-AG7; T cell receptor, 37.0 18 0.00079 17.0 2.6 87 19-113 8-110 (229)
33 1mq8_A ICAM-1, intercellular a 36.8 5.6 0.00025 20.0 0.0 27 24-52 200-226 (291)
34 1p4b_L Antibody variable light 36.5 23 0.001 16.2 4.2 38 24-62 17-54 (135)
35 1j05_L T84.66 antibody, anti-C 35.7 24 0.0011 16.2 4.5 38 24-61 13-50 (111)
36 1qfw_M FV, antibody (anti beta 35.7 24 0.0011 16.2 4.6 39 19-61 8-46 (108)
37 2rhe_A Bence-jones protein RHE 34.9 22 0.00096 16.4 2.7 36 24-62 12-48 (114)
38 1iby_A Nitrosocyanin; RED copp 34.2 7.2 0.00032 19.3 0.2 17 19-35 37-53 (112)
39 2gj6_D A6-TCR; X-RAY crystallo 34.2 25 0.0011 16.0 4.9 44 15-62 3-46 (200)
40 2ial_A CD4+ T cell receptor E8 33.6 26 0.0011 16.0 5.1 38 18-61 6-44 (202)
41 1ncn_A T lymphocyte activation 33.6 26 0.0011 16.0 3.8 43 24-67 6-49 (110)
42 1uzv_A Pseudomonas aeruginosa 33.5 14 0.00061 17.7 1.5 22 78-99 11-32 (114)
43 1k0h_A Gpfii; twisted beta-san 32.4 10 0.00046 18.4 0.8 37 14-61 66-102 (117)
44 3h0t_B FAB fragment, heavy cha 32.0 27 0.0012 15.8 5.3 37 24-61 12-49 (237)
45 3bkj_L WO2 IGG2A FAB fragment 31.3 28 0.0012 15.7 3.7 39 23-61 45-84 (252)
46 1q0x_L FAB 9B1, light chain; a 30.1 29 0.0013 15.6 5.7 38 24-62 12-49 (212)
47 2yz1_A Tyrosine-protein phosph 30.0 22 0.00098 16.4 2.1 40 19-62 14-53 (120)
48 1qfo_A Protein (sialoadhesin); 28.5 31 0.0014 15.4 3.8 49 14-63 3-53 (119)
49 3cue_D Transport protein parti 28.5 22 0.00098 16.4 1.9 29 11-39 155-183 (193)
50 2chh_A Protein RSC3288; lectin 28.3 19 0.00084 16.8 1.5 24 78-101 12-35 (114)
51 2cua_A Protein (CUA); CUA cent 28.2 11 0.00048 18.3 0.3 11 24-34 64-74 (135)
52 1mwa_A 2C alpha chain, 2C T ce 27.7 32 0.0014 15.3 4.3 40 19-62 7-46 (202)
53 2dlt_A Myosin binding protein 27.3 33 0.0015 15.3 6.8 78 12-105 8-88 (106)
54 1ves_A VNAR, NEW antigen recep 27.1 33 0.0015 15.3 4.8 40 18-60 6-46 (113)
55 1c1e_H Catalytic antibody 1E9 27.0 33 0.0015 15.3 4.8 82 24-112 12-118 (219)
56 3gkz_A Anti-methamphetamine si 26.8 34 0.0015 15.2 6.4 50 2-61 5-55 (257)
57 1oaq_L Light chain; antibody, 26.8 34 0.0015 15.2 4.5 37 24-61 12-48 (120)
58 2eny_A Obscurin; beta-sandwich 26.3 34 0.0015 15.2 4.6 74 12-99 8-84 (104)
59 2bv4_A Lectin CV-IIL; mannose; 26.2 15 0.00065 17.5 0.7 24 78-101 11-34 (113)
60 3b9v_A Heavy chain variable do 25.9 35 0.0016 15.1 4.6 39 21-62 9-48 (120)
61 1lr0_A TOLA protein; domain-sw 25.7 33 0.0015 15.3 2.4 30 17-46 41-70 (129)
62 1pkq_A (8-18C5) chimeric FAB, 25.6 35 0.0016 15.1 4.5 45 19-63 29-75 (241)
63 2otu_A FV light chain variable 25.5 36 0.0016 15.1 3.9 33 23-58 12-44 (115)
64 2jju_A Signal regulatory prote 25.5 36 0.0016 15.1 2.6 47 3-61 2-48 (127)
65 2jmb_A AGR_L_42P, hypothetical 25.4 20 0.00087 16.7 1.2 28 29-57 13-46 (79)
66 2esv_E KK50.4 T cell receptor 25.3 36 0.0016 15.1 4.6 37 18-60 5-42 (240)
67 3bdb_A Novel immune-type recep 25.2 14 0.00061 17.6 0.4 68 21-91 8-86 (137)
68 1xme_B Cytochrome C oxidase po 24.4 12 0.00053 18.0 -0.1 19 70-88 92-110 (168)
69 1i8k_A Epidermal growth factor 24.0 38 0.0017 14.9 2.4 52 15-71 4-57 (107)
70 3bx7_C Cytotoxic T-lymphocyte- 23.7 38 0.0017 14.9 5.3 92 24-116 11-119 (124)
71 2qhl_A Novel immune-type recep 23.7 28 0.0012 15.7 1.7 37 22-61 9-45 (111)
72 2ak4_D SB27 T cell receptor al 23.0 40 0.0018 14.8 3.8 45 15-62 6-50 (211)
73 2wbj_D OB TCR; transmembrane, 22.5 41 0.0018 14.7 4.7 43 15-62 27-70 (279)
74 2va4_A NCAM2, N-CAM 2, neural 22.5 41 0.0018 14.7 7.8 12 25-36 17-28 (192)
75 2dav_A SLOW MYBP-C, myosin-bin 21.9 42 0.0019 14.7 5.5 86 18-106 13-101 (126)
76 1q8m_A Triggering receptor exp 21.8 42 0.0019 14.7 5.4 99 15-116 7-123 (127)
77 1kxv_C Camelid VHH domain CAB1 21.7 42 0.0019 14.6 5.3 37 23-62 11-48 (121)
78 1jhl_L IGG1-kappa D11.15 FV (l 21.3 43 0.0019 14.6 4.9 41 18-62 7-47 (108)
79 3idg_B 2F5 FAB heavy chain; HI 21.2 43 0.0019 14.6 4.2 39 23-62 11-50 (237)
80 1n4x_H Immunoglobulin heavy ch 21.1 43 0.0019 14.6 3.5 39 21-62 9-48 (120)
81 1c5d_H Monoclonal antibody aga 20.8 44 0.002 14.5 3.3 35 24-61 12-47 (215)
82 1rzf_L FAB E51 light chain; HI 20.0 46 0.002 14.4 3.7 38 23-62 11-48 (213)
No 1
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=83.09 E-value=2.7 Score=21.99 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE-ECCCCEECCCCCCC------------C
Q ss_conf 1685368732331204897379998871078604756899888668967988-58984662555651------------7
Q T0552 10 SYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK-MSDGTVLLPNDLYP------------L 76 (122)
Q Consensus 10 ~YpF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~-~~dg~~l~pnD~yp------------L 76 (122)
+--|+|.+=+-|=....|++|.+.|.+.... ....+.|.+++-...+.+. ..+|... +....+ +
T Consensus 4 s~~~~V~~P~~~V~~~~G~~v~L~C~~~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~~~~R~~~~~~~~ 80 (139)
T 1pko_A 4 SGQFRVIGPGHPIRALVGDEAELPCRISPGK--NATGMEVGWYRSPFSRVVHLYRNGKDQ-DAEQAPEYRGRTELLKESI 80 (139)
T ss_dssp -CCCEEECCSSCEEEETTSCEEEEEEEESCC--CCTTSEEEEEEC--CCEEEEEETTEEC-GGGSCSTTTTSEEEECTTG
T ss_pred CEEEEEECCCCCEEEECCCCEEEEEEEECCC--CCCCEEEEEEEECCCCEEEEEEECCCC-CCCCCCCCCEEEEECCCCC
T ss_conf 4048998948988998699799999985888--998308999997788568998715565-6410665311578704777
Q ss_pred CCCEEEEEECCCC-CCCCEEEEEEEECCCC
Q ss_conf 8871899980368-8774279999828886
Q T0552 77 PGETFRLYYTSAS-TDQQTVDVYFQDSFGQ 105 (122)
Q Consensus 77 ~~e~FrLYYtS~s-~~~q~idv~veDnfgq 105 (122)
....+.|--.+.. .|+-...-.|.+..|.
T Consensus 81 ~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~ 110 (139)
T 1pko_A 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 110 (139)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEECHHHCEEEEEEEEECCCE
T ss_conf 587299999387125584999999979956
No 2
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=77.12 E-value=4.2 Score=20.78 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 85368732331204897379998871078604756899888668967988589846625556517887189998036887
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSASTD 91 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~ypL~~e~FrLYYtS~s~~ 91 (122)
+++|+ ..-|..+..|++++|+.+++-.|.-...-+.+++. .+| ++....-.. +-|=+...+.++++..+..
T Consensus 18 DL~v~-~~~p~~~~~G~~~~i~v~V~N~G~~~a~~~~V~l~-~dg--~~~~~~ti~-----L~pG~s~~v~~~~~~~~~G 88 (127)
T 3idu_A 18 DLTVE-IKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY-ING--TLYKNWTVS-----LGPKEEKVLTFNWTPTQEG 88 (127)
T ss_dssp CEEEE-EESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE-ETT--EEEEEEEEE-----ECTTCEEEEEEEECCSSCE
T ss_pred CEEEE-ECCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEE-ECC--EEEEEEEEC-----CCCCCEEEEEEEEEECCCC
T ss_conf 98999-25788534898899999999999755563799999-899--995248864-----5999889999878814588
Q ss_pred CCEEEEEEEECCCC
Q ss_conf 74279999828886
Q T0552 92 QQTVDVYFQDSFGQ 105 (122)
Q Consensus 92 ~q~idv~veDnfgq 105 (122)
..+|.+++ |.-.+
T Consensus 89 ~~~i~~~V-D~~n~ 101 (127)
T 3idu_A 89 MYRINATV-DEENT 101 (127)
T ss_dssp EEEEEEEE-STTCC
T ss_pred CEEEEEEE-CCCCC
T ss_conf 38899999-78995
No 3
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=73.73 E-value=4.6 Score=20.55 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=29.2
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 368732331204897379998871078604756899888668967
Q T0552 14 SIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAG 58 (122)
Q Consensus 14 ~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G 58 (122)
.|..+|-.-....|++|.|+|++.....+ +..-|.|..|++
T Consensus 6 ~~~~~P~~l~~~~G~~vtL~C~~s~~~~~----~~~WyrQ~~g~~ 46 (128)
T 1nez_G 6 ELRIFPKKMDAELGQKVDLVCEVLGSVSQ----GCSWLFQNSSSK 46 (128)
T ss_dssp EEEEESSCEEECTTCCEEEEEEEESCCSS----CEEEEEEESSCS
T ss_pred EEEECCCEEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCC
T ss_conf 79990998996899979999996377389----639998786877
No 4
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=73.71 E-value=4 Score=20.90 Aligned_cols=42 Identities=26% Similarity=0.607 Sum_probs=28.0
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCC
Q ss_conf 8536873233120489737999887107860475689988866896
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGA 57 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~ 57 (122)
++.|+.-|....|..|++|.++|.+. |.-..+ .|.++..+|.
T Consensus 2 ~~~v~~~P~~~~v~~G~~~~l~C~v~--g~~~~~--~v~W~~~~~~ 43 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVA--GDAKDK--DISWFSPNGE 43 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEES--SCCSCC--EEEEECTTSC
T ss_pred CEEEEEECCCEEECCCCEEEEEEEEE--CCCCCC--EEEEEECCCE
T ss_conf 37999939977994699099999992--578998--8999989998
No 5
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=64.08 E-value=8.2 Score=18.99 Aligned_cols=92 Identities=16% Similarity=0.301 Sum_probs=62.9
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEE----------CCCCCCCEEEEEEE--EECCCEEEEECCCCEECCCCCCCCCCC
Q ss_conf 853687323312048973799988710----------78604756899888--668967988589846625556517887
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHR----------DGRFEETKYFIRYF--QPDGAGTLKMSDGTVLLPNDLYPLPGE 79 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~r----------eG~y~~t~Y~IRYF--Q~dG~G~L~~~dg~~l~pnD~ypL~~e 79 (122)
||.+..=.-|++...|+.+++|+-+.- .|.+-.+ .+|..+ ..+|+-.+.++-++..-.| -
T Consensus 1 p~r~~~r~~p~~~~~G~v~~vk~li~HPMeTGl~~D~~g~~IPa-~~I~~v~v~~ng~~v~~~~~~~svS~N-------P 72 (107)
T 1v8h_A 1 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPA-KYINLVEVYFEGEKVAEARPGPSTSAN-------P 72 (107)
T ss_dssp CCCEEEEEESSSCCTTCEEEEEEEECCCCBCSCCBCTTSCBCCC-BCEEEEEEEETTEEEEEECCCSSCCSS-------C
T ss_pred CCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCH-HHEEEEEEEECCEEEEEEECCCCCCCC-------C
T ss_conf 91389986777668998599999998878422024888899157-813899999999999999817852379-------7
Q ss_pred EEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 1899980368877427999982888658999853
Q T0552 80 TFRLYYTSASTDQQTVDVYFQDSFGQLQQLTFSF 113 (122)
Q Consensus 80 ~FrLYYtS~s~~~q~idv~veDnfgq~~ql~f~F 113 (122)
.|++++...... ++.+...||.|+..+-+..-
T Consensus 73 ~~~F~~~~~~~g--~l~v~~~Dn~G~~~~~~~~i 104 (107)
T 1v8h_A 73 LYAFKFKAEKAG--TFTIKLKDTDGDTGEASVKL 104 (107)
T ss_dssp EEEEEEECCSCE--EEEEEEEETTSCEEEEEEEE
T ss_pred EEEEEECCCCCC--EEEEEEEECCCCEEEEEEEE
T ss_conf 599997269884--69999998989889999999
No 6
>2oi9_B V alpha, T cell receptor alpha chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2icw_I 1i9e_A* 2e7l_A 3e3q_D 3e2h_B
Probab=63.38 E-value=5 Score=20.30 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=31.8
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 687323312048973799988710786047568998886689679885
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|.--|-......|++|.|.|++.- ....|..-|-|..|+|-..+
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~----~~~~~~~WyrQ~~g~~~~~i 46 (113)
T 2oi9_B 3 VTQPDARVTVSEGASLQLRCKYSY----SATPYLFWYVQYPRQGPQLL 46 (113)
T ss_dssp EECSCSEEEECTTSCEEECCEEEC----SSCCCEEEEEECTTSCCEEE
T ss_pred EECCCCEEEECCCCCEEEEEEEEC----CCCCCEEEEEECCCCCCEEE
T ss_conf 788899599979997999999807----87898899999999984674
No 7
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=62.10 E-value=9 Score=18.77 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=54.6
Q ss_pred ECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEEECCC
Q ss_conf 31685368732331204897379998871078604756899888668967988589846625556517887189998036
Q T0552 9 QSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSA 88 (122)
Q Consensus 9 Q~YpF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~ypL~~e~FrLYYtS~ 88 (122)
++.|..+..-+-.-.+..|+++.++|... |.- -.|.|+ .||..+.+++++-+.... |.-++.
T Consensus 6 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~--g~p----p~i~W~----------k~g~~l~~~~~~~~~~~~--L~I~~~ 67 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDV----QSINWL----------RDGVQLVESNRTRITGEE--VEVRDS 67 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEE--SSC----CEEEEE----------BTTBCCCCCSSEEECSSE--EEESSC
T ss_pred CCCCCCCEECCCEEEECCCCEEEEEEECC--CCC----CEEEEE----------EEEECCCEEEEEEEEEEE--EEEEEC
T ss_conf 55699435637628994989699998778--989----889998----------621001101467610010--188300
Q ss_pred CC-CCCEEEEEEEECCCCEE
Q ss_conf 88-77427999982888658
Q T0552 89 ST-DQQTVDVYFQDSFGQLQ 107 (122)
Q Consensus 89 s~-~~q~idv~veDnfgq~~ 107 (122)
.. |+-.....+....|...
T Consensus 68 ~~~D~G~Y~C~a~N~~G~~~ 87 (95)
T 2ckn_A 68 IPADSGLYACVTSSPSGSDT 87 (95)
T ss_dssp CGGGSEEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEEEECCCCEEE
T ss_conf 10111269999984898799
No 8
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport protein; HET: PLM; 1.55A {Homo sapiens} PDB: 2pwn_A* 1wc8_A* 2cfh_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=58.79 E-value=7.6 Score=19.22 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCEEEEEECCHHCCCCCEEEEEEEEEEC
Q ss_conf 68536873233120489737999887107
Q T0552 11 YPFSIETMPVPKKLKVGETAEIRCQLHRD 39 (122)
Q Consensus 11 YpF~v~tmPv~k~I~~GetvEIRc~L~re 39 (122)
--+.|+++-|+..+..+++-|||..|+|.
T Consensus 151 vq~~v~~~fv~D~LrGd~~tEirvkl~~~ 179 (200)
T 1sz7_A 151 VQMAVEAKFVQDTLKGDGVTEIRMRFIRR 179 (200)
T ss_dssp TTEEEEEEEEECGGGTCSSEEEEEEEEEE
T ss_pred HEEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf 23789999987422589833999986021
No 9
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=57.49 E-value=8.1 Score=19.05 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=29.8
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCC-CEEEEEEEEECCCEEEEE
Q ss_conf 23312048973799988710786047-568998886689679885
Q T0552 19 PVPKKLKVGETAEIRCQLHRDGRFEE-TKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG~y~~-t~Y~IRYFQ~dG~G~L~~ 62 (122)
|.--.+..|++|.|.|.....--... .-|.--|=|..|++--.+
T Consensus 8 P~sl~~~~G~tvtl~C~~s~s~~~~~~~~~~~WY~Q~~g~~~~~L 52 (113)
T 1dlf_L 8 PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLL 52 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEE
T ss_conf 998998999999999995898755898746999981899997499
No 10
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 2q3a_A
Probab=52.05 E-value=13 Score=17.73 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=27.9
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 68732331204897379998871078604756899888668967
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAG 58 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G 58 (122)
+..=|.......||+|.|.|..... .... +.--|.|..|++
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~-~~~~--~~~WyrQ~~g~~ 43 (114)
T 2hp4_A 3 FRVSPLDRTWNLGETVELKCQVLLS-NPTS--GASWLFQPRGAA 43 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCS-SCCS--CEEEEEEESSSS
T ss_pred CEECCCCEECCCCCCEEEEEEEECC-CCCC--CEEEEEECCCCC
T ss_conf 0287986882799979999997179-8999--989999899998
No 11
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=51.65 E-value=13 Score=17.69 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.2
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEE
Q ss_conf 687323312048973799988710786047568998886689679
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGT 59 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~ 59 (122)
|.=-|.-.....|++|.|+|... +.. .|.--|-|..|++-
T Consensus 4 VtQ~P~~~~~~~G~~vtL~C~~s--~~~---~~~~WYrQ~~g~~~ 43 (121)
T 2oi9_C 4 VTQSPRNKVAVTGEKVTLSCNQT--NNH---NNMYWYRQDTGHEL 43 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEES--SCC---SEEEEEEESSSSCC
T ss_pred EEEECCEEEECCCCCEEEEEEEC--CCC---CCEEEEEECCCCCC
T ss_conf 89649959987999899999986--995---86799999689833
No 12
>3c60_A TCR YAE62 alpha chain; TCR-PMHC complex; 3.05A {Mus musculus}
Probab=51.38 E-value=6.4 Score=19.67 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=28.4
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 6873233120489737999887107860475689988866896798
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTL 60 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L 60 (122)
|.-+|-.-.+..|++|.|+|.....+.+ |..=|-|..|+|-.
T Consensus 3 VtQ~~~~~~v~~G~~vtL~C~~s~~~~~----~~~WYrQ~pg~~p~ 44 (199)
T 3c60_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYP----TLFWYVQYSGEGPQ 44 (199)
T ss_dssp CCCCCCEEEEETTEEEEECCBCBCSSCC----EEEEEEECTTSCCE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCCCC
T ss_conf 5901980898799999999995488778----88999979999872
No 13
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=51.27 E-value=14 Score=17.66 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=43.1
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEE------EEE--CCCC-EEC----CCCCCCC---CC
Q ss_conf 687323312048973799988710786047568998886689679------885--8984-662----5556517---88
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGT------LKM--SDGT-VLL----PNDLYPL---PG 78 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~------L~~--~dg~-~l~----pnD~ypL---~~ 78 (122)
+...|-.-....|++|.|.|.+.....+ +.-=|.|..|++. +.. .... .+- .+.++.. ..
T Consensus 12 ~~~~P~~~~~~~G~svtL~C~~~~~~~~----~v~WyrQ~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 87 (166)
T 3dmm_C 12 LRIFPKKMDAELGQKVDLVCEVLGSVSQ----GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN 87 (166)
T ss_dssp EEEECSCBCCCTTCCEEEEEEEESSSCC----EEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECSTT
T ss_pred EEECCCEEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCCCCCCEEEEEEEEECCCCEECCCCCCCCEEEEECCCC
T ss_conf 8972995798699979999996678899----789999788997647379998641026534056776665587899989
Q ss_pred CEEEEEECCCCCCCCEEEEE
Q ss_conf 71899980368877427999
Q T0552 79 ETFRLYYTSASTDQQTVDVY 98 (122)
Q Consensus 79 e~FrLYYtS~s~~~q~idv~ 98 (122)
..|+|--++...+-..+=+-
T Consensus 88 ~~~~L~I~~~~~~Dsg~Y~C 107 (166)
T 3dmm_C 88 NKYVLTLNKFSKENEGYYFC 107 (166)
T ss_dssp TEEEEEESSCCTTTCEEEEE
T ss_pred CEEEEEECCCCCCCCEEEEE
T ss_conf 99999989872177999999
No 14
>3bis_A Programmed cell death 1 ligand 1; CO-stimulation, immunoglobulin-like beta-sandwich, T cell, B cell, programmed death, immune system, transmembrane; 2.64A {Homo sapiens} PDB: 3bik_A 3fn3_A
Probab=50.35 E-value=14 Score=17.57 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCC-----------CCCCE
Q ss_conf 8536873233120489737999887107860475689988866896798858984662555651-----------78871
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYP-----------LPGET 80 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~yp-----------L~~e~ 80 (122)
-|+|+..+-.-.+..|++|.|+|.+..........+.|.++. +|+..+.+..+.....+..-. +....
T Consensus 1 ~ftv~~p~~~~~v~~G~~vtL~C~~~~~~~~~~~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (222)
T 3bis_A 1 AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEM-EDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN 79 (222)
T ss_dssp -CCCBCSCSEEEEETTSCEEEEEECCCCSSCCTTSCEEEEEE-TTEEEEEEETTEECGGGSCTTCSTTEEECHHHHTTTE
T ss_pred CEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEE-CCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 989998898789972886999999547999875507999997-9960078852520033237651473798620234875
Q ss_pred EEEEECCCC-CCCCEEEEEEEECCCCE
Q ss_conf 899980368-87742799998288865
Q T0552 81 FRLYYTSAS-TDQQTVDVYFQDSFGQL 106 (122)
Q Consensus 81 FrLYYtS~s-~~~q~idv~veDnfgq~ 106 (122)
+.|--.... .|.-+....+....+..
T Consensus 80 ~sl~i~nv~~~D~G~Y~C~v~~~~~~~ 106 (222)
T 3bis_A 80 AALQITDVKLQDAGVYRCMISYGGADY 106 (222)
T ss_dssp EEEEESSCCGGGCEEEEEEEESSSEEE
T ss_pred EEEEEECCCHHHCEEEEECCCCCCCCE
T ss_conf 899995256699768985043487520
No 15
>1ol0_A Immunoglobulin G; camelised variable heavy domain; 1.8A {Homo sapiens} SCOP: b.1.1.1 PDB: 1igm_H 2uzi_H* 1dql_H 2vh5_H* 1ohq_A 1fgv_H 3cfi_C
Probab=49.93 E-value=12 Score=17.93 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=27.8
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 31204897379998871078604756899888-6689679885
Q T0552 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM 62 (122)
Q Consensus 21 ~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~ 62 (122)
|.-+++||++-|.|+.- ...|. .|.|.++ |+-|||-.++
T Consensus 9 ~~~~kpg~sl~LsC~~S-G~~~~--~~~~~WvRQ~PGkglEwv 48 (121)
T 1ol0_A 9 GGLVQPGGSLRLSCAAS-GFTFS--SYAMSWFRQAPGKEREIV 48 (121)
T ss_dssp CEEECTTCCEEEEEEEE-SSCGG--GSCEEEEEECTTSCCEEE
T ss_pred CCEECCCCCEEEEEEEE-CCCHH--CCCEEEEEECCCCCEEEE
T ss_conf 82699999949989986-97813--096788980899875999
No 16
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius}
Probab=48.26 E-value=15 Score=17.37 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 1204897379998871078604756899888-6689679885
Q T0552 22 KKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM 62 (122)
Q Consensus 22 k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~ 62 (122)
.-+++||++-|-|+.--...|.-..|.|.++ |+-|||--++
T Consensus 10 ~lvkpg~sl~LsC~~SG~~~~t~s~y~~~WvRQ~PGkglEwl 51 (137)
T 3eak_A 10 GLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAV 51 (137)
T ss_dssp CEECTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEE
T ss_pred CEECCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 359999996898999489974767884788980899874999
No 17
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=47.24 E-value=16 Score=17.27 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=55.8
Q ss_pred EECCHHCCCCCEEEEEEEEEE---C-------CCCCCCEEEEEEEE--ECCCEEEEECCCCEECCCCCCCCCCCEEEEEE
Q ss_conf 323312048973799988710---7-------86047568998886--68967988589846625556517887189998
Q T0552 18 MPVPKKLKVGETAEIRCQLHR---D-------GRFEETKYFIRYFQ--PDGAGTLKMSDGTVLLPNDLYPLPGETFRLYY 85 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~r---e-------G~y~~t~Y~IRYFQ--~dG~G~L~~~dg~~l~pnD~ypL~~e~FrLYY 85 (122)
|-+|++.++|+.++||+-+.. . |.+- ...+|..+. .+|+-.+.++-++..-. .-.|++.+
T Consensus 8 iki~~~~k~G~v~~vk~li~HPMeTGlr~d~~g~~I-Pa~~I~~~~v~~ng~~v~~~~~~~~iS~-------NP~~~F~~ 79 (108)
T 2oxg_Z 8 VKVPSSAKAGETVTVKALISHKMESGQRKDADGKLI-PRSIINRFTCELNGVNVVDVAIDPAVST-------NPYFEFDA 79 (108)
T ss_dssp EECCSEECTTEEEEEEEEECCCCBCSCCBCTTSCBC-CCBCEEEEEEEETTEEEEEEEECTTBCS-------SCEEEEEE
T ss_pred EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC-CHHHEEEEEEEECCEEEEEEEECCCCCC-------CCEEEEEE
T ss_conf 673275579987999999878885333318778994-3680389999999999999980785337-------97489997
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 036887742799998288865899985
Q T0552 86 TSASTDQQTVDVYFQDSFGQLQQLTFS 112 (122)
Q Consensus 86 tS~s~~~q~idv~veDnfgq~~ql~f~ 112 (122)
+.. ....+.+...||.|+..+-+..
T Consensus 80 ~~~--~~g~l~v~~~Dn~G~~~~~~~~ 104 (108)
T 2oxg_Z 80 KVD--AAGEFKFTWYDDDGSVYEDVKP 104 (108)
T ss_dssp EEC--SSEEEEEEEEETTSCEEEEEEE
T ss_pred CCC--CCCEEEEEEEECCCCEEEEEEE
T ss_conf 379--9966999999798988999999
No 18
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembrane, repeat, signal; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=46.84 E-value=11 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=15.9
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEE
Q ss_conf 8536873233120489737999887
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQL 36 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L 36 (122)
.|.|++.|-.-.+..|++|.++|..
T Consensus 2 ~f~v~v~P~~~~V~~G~sv~L~Cs~ 26 (192)
T 1zxq_A 2 VFEVHVRPKKLAVEPKGSLEVNCST 26 (192)
T ss_dssp CCCEEEESSEEEECTTEEEEEEEEE
T ss_pred CEEEEEECCCEEECCCCCEEEEEEC
T ss_conf 4899985897599889979999997
No 19
>1ub6_H Antibody 19G2, alpha chain; antibody fluorscence dynamics, SERA ligand, immune system; 2.12A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1lo4_H
Probab=46.31 E-value=12 Score=18.09 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=24.1
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEE
Q ss_conf 204897379998871078604756899888-66896798
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTL 60 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L 60 (122)
-+.+|+++-|.|+.- | |.-..|.|-++ |+-|+|--
T Consensus 10 ~v~pg~s~~lsC~~S--g-~~~~~~~~~W~rQ~pG~~le 45 (208)
T 1ub6_H 10 LVKPGGSLKLSCTAS--G-ITFSRYIMSWVRQIPEKRLE 45 (208)
T ss_dssp EECTTCCEEEEEEEE--S-CCGGGSCEEEEEECTTCCCE
T ss_pred EECCCCCEEEEEEEE--C-CCHHCCCEEEEEECCCCCEE
T ss_conf 389999949989995--9-78230948999918999837
No 20
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=45.93 E-value=16 Score=17.15 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=29.7
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 687323312048973799988710786047568998886689679885
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|+--|-.-.+..|++|.|+|.....+. .|..-|=|..|++-..+
T Consensus 3 V~Q~p~~l~~~~G~~vtl~C~~s~s~~----~~~~WYrQ~pg~~p~~l 46 (112)
T 2z35_A 3 VTQTGGQVALSEEDFLTIHCNYSASGY----PALFWYVQYPGEGPQFL 46 (112)
T ss_dssp EECSCSEEEEETTCCEEECCEEECSSC----CEEEEEEECTTSCCEEE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCEEE
T ss_conf 880798189889999999999648988----99899998899995886
No 21
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3aaz_A 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* 1etz_H* ...
Probab=43.48 E-value=18 Score=16.91 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=46.8
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE----CCC-CEECC--CCCCC----------------C
Q ss_conf 31204897379998871078604756899888-6689679885----898-46625--55651----------------7
Q T0552 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM----SDG-TVLLP--NDLYP----------------L 76 (122)
Q Consensus 21 ~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~----~dg-~~l~p--nD~yp----------------L 76 (122)
+.-+.+|++|-|-|+. .+..+....|.|.++ |+-|+|--++ .+| +.+-| .+|.- |
T Consensus 9 ~~lv~pG~svtlsC~~-SG~s~~~s~~~~~WyrQ~pGk~le~i~~i~~~~~~~~~~~~~~Rft~s~d~s~~~~~L~Is~l 87 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV 87 (228)
T ss_dssp CSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred CCEECCCCCEEEEEEE-ECCEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCEECCCCCCEEEEEEEECC
T ss_conf 8259999995998999-885004688238999969999759999984899906774247986784457560899998069
Q ss_pred CCCEEEEEECCCCC-CCCEEEEEEEECCCCEEEEEEE
Q ss_conf 88718999803688-7742799998288865899985
Q T0552 77 PGETFRLYYTSAST-DQQTVDVYFQDSFGQLQQLTFS 112 (122)
Q Consensus 77 ~~e~FrLYYtS~s~-~~q~idv~veDnfgq~~ql~f~ 112 (122)
..+.--.||-.... ..........|.||+--.++..
T Consensus 88 ~~eDsAvYYCA~~~~~~~~~~~~~~~~~G~GT~vtV~ 124 (228)
T 3bae_H 88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVS 124 (228)
T ss_dssp CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEEC
T ss_pred CCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEEC
T ss_conf 8898589998884656887404400225889899976
No 22
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D
Probab=43.23 E-value=18 Score=16.89 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=26.7
Q ss_pred EEEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 00331685368732331204897379998871078604756899888668967988
Q T0552 6 DIQQSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 6 DvqQ~YpF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
.||| |-+|.. ..|++|.|+|...-.+ .-|.-=|-|..|+|-..
T Consensus 2 ~v~Q--P~sv~~-------~~G~svtL~C~~~~~~----~~~~~WYrQ~~g~~p~~ 44 (200)
T 2nw2_A 2 NIDQ--PTEMTA-------TEGAIVQINCTYQTSG----FNGLFWYQQHAGEAPTF 44 (200)
T ss_dssp CCBC--CSEEEE-------ETTCCEEEEEECCCSS----CCCEEEEEECTTSCCEE
T ss_pred CEEC--CCEEEE-------CCCCCEEEEEEECCCC----CCCEEEEEECCCCCCEE
T ss_conf 6638--956999-------5999999899977888----48889999999998455
No 23
>1qgc_4 Protein (inmunoglobuline); virus-antibody complex, icosahedral virus, virus/immune system complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=41.48 E-value=19 Score=16.72 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=16.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCE
Q ss_conf 04897379998871078604756899888-668967
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAG 58 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G 58 (122)
..+||+|-|.|+.-. +-+...-|.|.++ |..|+|
T Consensus 13 ~~~G~t~tl~C~~S~-~~~~~~~~~~~WyrQ~pG~~ 47 (438)
T 1qgc_4 13 VSLGQRATISCRASE-SVDSSGHSFMHWYQQKPGQP 47 (438)
T ss_dssp ECTTSCEEEEEEESS-CCEETTEECEEEEEECTTSC
T ss_pred ECCCCCEEEEEECCC-CCCCCCCEEEEEEEECCCCC
T ss_conf 899999999998288-82689971389999798999
No 24
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=41.37 E-value=19 Score=16.71 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=25.5
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 1204897379998871078604756899888-6689679885
Q T0552 22 KKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM 62 (122)
Q Consensus 22 k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~ 62 (122)
.-.++|||+-|.|+. ....+. .|.|-++ |.-|||-.+|
T Consensus 10 ~~v~pG~sl~lsC~~-Sg~~~s--sy~~~WyrQ~pGk~le~~ 48 (223)
T 1dee_B 10 GVVQPGKSLRLSCAA-SGFTFS--GYGMHWVRQAPGKGLEWV 48 (223)
T ss_dssp CEECTTCCEEEEEEE-ESSCGG--GSCEEEEEECTTSCEEEE
T ss_pred CEECCCCCEEEEEEE-ECCCHH--HCCEEEEEECCCCCEEEE
T ss_conf 159999993999999-598856--195899983899977999
No 25
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=41.31 E-value=19 Score=16.71 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=28.1
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 323312048973799988710786047568998886689679885
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
=|-.-.+..|++|.|+|.....+. .|.--|-|..|+|-..+
T Consensus 7 ~p~~v~v~~G~svtl~C~~~~~~~----~~~~WYrQ~~g~~p~~l 47 (194)
T 1lp9_E 7 TEGLVTLTEGLPVMLNCTYQSTYS----PFLFWYVQHLNEAPKLL 47 (194)
T ss_dssp CCSEEEEETTSCEEECEEEECSSS----CCEEEEEECTTSCCEEE
T ss_pred CCCEEEECCCCCEEEEEEEECCCC----CCEEEEEECCCCCCEEE
T ss_conf 799189889999999999736887----86899999999998999
No 26
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin- like beta-sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=40.70 E-value=20 Score=16.65 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=29.4
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 6873233120489737999887107860475689988866896798
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTL 60 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L 60 (122)
|..-|-.-....|++|.|+|...... ...|..=|-|..|++--
T Consensus 12 vTqsP~~l~v~~G~svtL~C~~s~~~---~~~~~~WYrq~~g~~~~ 54 (134)
T 3bik_B 12 LTFYPAWLTVSEGANATFTCSLSNWS---EDLMLNWNRLSPSNQTE 54 (134)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCC---TTCEEEEEEECTTCCEE
T ss_pred EEECCCEEEECCCCCEEEEEEECCCC---CCCCEEEEEECCCCCCC
T ss_conf 67987338987999999999975887---89839999989999984
No 27
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A 3byy_A 3byt_A 3bzd_A 1u3h_B ...
Probab=39.85 E-value=20 Score=16.57 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=26.8
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEE
Q ss_conf 687323312048973799988710786047568998-88668967988
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLK 61 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~ 61 (122)
|+-.|----...|++|.|+|.... +. |.|. |=|..|+|--.
T Consensus 2 VtQ~P~~~~~~~G~svtL~C~~~~-~~-----~~v~WyrQ~pG~~l~~ 43 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQTN-NH-----NNMYWYRQDTGHGLRL 43 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEESS-CC-----SEEEEEEECTTSCEEE
T ss_pred CEECCCEEEECCCCCEEEEEEECC-CC-----CEEEEEEECCCCCEEE
T ss_conf 588898689878997999999859-97-----6299999999998599
No 28
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=39.82 E-value=20 Score=16.60 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=19.1
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEE-EEEEECCCE
Q ss_conf 204897379998871078604756899-888668967
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFI-RYFQPDGAG 58 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~I-RYFQ~dG~G 58 (122)
.+.+|++|.|+|..-.........+.| -|=|..|++
T Consensus 26 svs~G~tVtL~C~~S~s~~~~~~~~yl~WYqQ~pG~~ 62 (268)
T 1x9q_A 26 PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQS 62 (268)
T ss_dssp CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSC
T ss_pred EECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 8899999998997688746578953179987789999
No 29
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglobulin domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_A 1npu_A
Probab=38.55 E-value=21 Score=16.44 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=29.4
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEE
Q ss_conf 3687323312048973799988710786047568998-88668967988
Q T0552 14 SIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLK 61 (122)
Q Consensus 14 ~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~ 61 (122)
+|..-|-.-.+..|++|.|.|.... .. . .+.|. |-|..|++.-.
T Consensus 1 svtqsP~~l~v~~G~~vtL~C~~s~--~~-~-~~~~~Wyrq~~g~~~~~ 45 (117)
T 3bp6_A 1 SLTFYPAWLTVSEGANATFTCSLSN--WS-E-DLMLNWNRLSPSNQTEK 45 (117)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESS--CC-T-TCEEEEEEECTTCCEEE
T ss_pred CCEECCCEEEECCCCCEEEEEEEEC--CC-C-CCEEEEEEECCCCCCEE
T ss_conf 9658898589889999999999744--78-8-76479999899998779
No 30
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=37.91 E-value=17 Score=17.03 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=18.2
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 87189998036887742799998288
Q T0552 78 GETFRLYYTSASTDQQTVDVYFQDSF 103 (122)
Q Consensus 78 ~e~FrLYYtS~s~~~q~idv~veDnf 103 (122)
.-.|.+---.-|+.+|+|+|||-|+-
T Consensus 18 ni~Fgvta~~Nsa~~QtikVyiDd~~ 43 (128)
T 2wra_A 18 NTDFRAIFFANAAEQQHIKLFIGDSQ 43 (128)
T ss_dssp TCEEEEEEEECCSSCEEEEEEETTCC
T ss_pred CCEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 64781899960688406999967975
No 31
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=37.31 E-value=22 Score=16.32 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=45.2
Q ss_pred CEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCC-CCCC---CCCEEEEEECCC
Q ss_conf 536873233120489737999887107860475689988866896798858984662555-6517---887189998036
Q T0552 13 FSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPND-LYPL---PGETFRLYYTSA 88 (122)
Q Consensus 13 F~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD-~ypL---~~e~FrLYYtS~ 88 (122)
..|...|....+..|++|.++|... |..... .|.|+..+|+ .+.+++ ++.. .....+|.-.+.
T Consensus 3 ~~v~i~P~~~~~~~G~~~~l~C~~~--g~~~~~--~v~W~~~~g~---------~~~~~~~~~~~~~~~~~~~~L~i~~~ 69 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVA--GDAKDK--DISWFSPNGE---------KLSPNQQRISVVWNDDDSSTLTIYNA 69 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEEC--CCSCCC--EEEEECTTSC---------EECCBSSSEEEEEEETTEEEEEECSC
T ss_pred EEEEEECCCEEEECCCCEEEEEEEE--CCCCCC--EEEEEECCCE---------ECCCCCCEEEEEEECCCEEEEEECCC
T ss_conf 7999979988995599599999993--689998--8999989999---------93356852999980798489999528
Q ss_pred CC-CCCEEEEEEEECCCCEE
Q ss_conf 88-77427999982888658
Q T0552 89 ST-DQQTVDVYFQDSFGQLQ 107 (122)
Q Consensus 89 s~-~~q~idv~veDnfgq~~ 107 (122)
+. |+......+....|...
T Consensus 70 ~~~d~G~Y~C~~~~~~~~~~ 89 (191)
T 1epf_A 70 NIDDAGIYKCVVTAEDGTQS 89 (191)
T ss_dssp CGGGCEEEEEEEEETTTEEE
T ss_pred CHHHCEEEEEEEECCCCCEE
T ss_conf 97999299999972779525
No 32
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=37.01 E-value=18 Score=16.97 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=40.1
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE---ECCCCEECCCCCCCC----CCCEEEEEECCCCC
Q ss_conf 2331204897379998871078604756899888-668967988---589846625556517----88718999803688
Q T0552 19 PVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLK---MSDGTVLLPNDLYPL----PGETFRLYYTSAST 90 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~---~~dg~~l~pnD~ypL----~~e~FrLYYtS~s~ 90 (122)
|-.-.+..|++|.|+|.... ..+.|-|+ |..|++-+. ...|..- +.++.. .+..|.|--++.-.
T Consensus 8 P~~lsv~eG~svtL~C~~s~------s~~~~~WYrQ~~g~~~~~l~~~~~~~~~--~gr~~~~~~~~~~~~~L~I~~~~~ 79 (229)
T 3mbe_C 8 PPALSLYEGADSGLRCNFST------TMKSVQWFQQNHRGRLITLFYLAQGTKE--NGRLKSTFNSKERYSTLHIKDAQL 79 (229)
T ss_dssp CSEEEEETTCCEEEEEEESS------CCSCEEEEEECSSSCBCCCEEESSEEEE--ETTEEEEEETTTTEEEEEECSCCS
T ss_pred CCEEEECCCCCEEEEEEEEC------CCCCEEEEEECCCCCCEEEEECCCCCCC--CCCEEEEEECCCCEEEEEECCCCC
T ss_conf 99999928999999999827------9987799998899985577412335465--898789998878999999898880
Q ss_pred -CCCEEEEEEEEC-------CCCEEEEEEEE
Q ss_conf -774279999828-------88658999853
Q T0552 91 -DQQTVDVYFQDS-------FGQLQQLTFSF 113 (122)
Q Consensus 91 -~~q~idv~veDn-------fgq~~ql~f~F 113 (122)
|+.+-=--..+. ||.--+|+..=
T Consensus 80 ~DSAvYyCA~~~~~~~~~~~FG~GT~LtV~~ 110 (229)
T 3mbe_C 80 EDSGTYFCAAEDGGSGNKLIFGTGTLLSVKP 110 (229)
T ss_dssp TTCBEEEEEEECSSSTTCEEECCCCEEEEEC
T ss_pred CCCCCEEEEEEECCCCCEEEECCCEEEEEEC
T ss_conf 3185378788516899856968999999948
No 33
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interface, immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=36.80 E-value=5.6 Score=20.03 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 04897379998871078604756899888
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYF 52 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYF 52 (122)
+..|++++++|.. .|.+--..++++++
T Consensus 200 ~~~G~~~~l~C~~--~g~~p~~~~~~~w~ 226 (291)
T 1mq8_A 200 LEVDTQGTVVCSL--DGLFPVSEAQVHLA 226 (291)
T ss_dssp -----------------------------
T ss_pred EECCCEEEEEEEE--ECCCCCCEEEEEEE
T ss_conf 3449659999999--67889970699999
No 34
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=36.47 E-value=23 Score=16.24 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 048973799988710786047568998886689679885
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
..+|++|.|+|+... +......|.-=|-|..|++-..+
T Consensus 17 v~pG~svtL~C~~s~-~~~~~~~yi~WYrQ~pG~~p~ll 54 (135)
T 1p4b_L 17 TSPGETVTLTCRSST-GAVTTSNYASWVQEKPDHLFTGL 54 (135)
T ss_dssp ECTTCEEEEEEEETT-SSCCGGGCCEEEEEEGGGEEEEE
T ss_pred ECCCCCEEEEEEECC-CCCCCCCCEEEEEECCCCCCEEE
T ss_conf 589998899999678-98877685899874899875771
No 35
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=35.70 E-value=24 Score=16.16 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 04897379998871078604756899888668967988
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
...|++|.|+|.+.....-.+..|.-=|=|..|++--.
T Consensus 13 ~~~G~svtl~C~~s~~~~~~~~~~~~WYrq~~g~~p~~ 50 (111)
T 1j05_L 13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKL 50 (111)
T ss_dssp CCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEE
T ss_conf 89999999999948885589975489999189998899
No 36
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone, stimulation of production of progesterone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=35.65 E-value=24 Score=16.16 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=25.1
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 2331204897379998871078604756899888668967988
Q T0552 19 PVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
|---....|++|.|.|...-.. .-|..=|-|..|++-..
T Consensus 8 P~s~~~~~G~svtl~C~~s~~~----~~~~~WYrq~~g~~p~~ 46 (108)
T 1qfw_M 8 PKSMSMSVGERVTLSCKASETV----DSFVSWYQQKPEQSPKL 46 (108)
T ss_dssp CSCEECCTTCCEEEEEEESSCC----CSCEEEEEECTTSCCEE
T ss_pred CCEEEECCCCCEEEEEEECCCC----CCCEEEEEECCCCCCEE
T ss_conf 9999989999999999919999----88889999389998789
No 37
>2rhe_A Bence-jones protein RHE (light chain); immunoglobulin; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 2a9m_L 2a9n_L*
Probab=34.87 E-value=22 Score=16.44 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEE-EEECCCEEEEE
Q ss_conf 0489737999887107860475689988-86689679885
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRY-FQPDGAGTLKM 62 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRY-FQ~dG~G~L~~ 62 (122)
+.+|++|.|+|.. ..+++.. |.|.+ =|..|++.-.+
T Consensus 12 v~~G~svtL~C~~-s~~~~~~--~~i~WYrq~~g~~~~~l 48 (114)
T 2rhe_A 12 GTPGQRVTISCTG-SATDIGS--NSVIWYQQVPGKAPKLL 48 (114)
T ss_dssp ECTTCCEEEEEEC-CTTTTTT--SCEEEEECCTTSCCEEE
T ss_pred ECCCCCEEEEEEE-CCCCCCC--CEEEEEECCCCCCCEEE
T ss_conf 7999989989997-7628739--81897973599887797
No 38
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=34.25 E-value=7.2 Score=19.33 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=9.6
Q ss_pred ECCHHCCCCCEEEEEEE
Q ss_conf 23312048973799988
Q T0552 19 PVPKKLKVGETAEIRCQ 35 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~ 35 (122)
|-.=.|..|++|.|+++
T Consensus 37 P~~i~V~~G~~V~~~~~ 53 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVE 53 (112)
T ss_dssp SCEEEEETTCEEEEEEE
T ss_pred CCEEEECCCCEEEEEEE
T ss_conf 99899879999999999
No 39
>2gj6_D A6-TCR; X-RAY crystallography, HTLV-1 TAX peptide, haptenated peptide, lysine-4-(3-indolyl)-butyric acid, MHC class I,HLA A2, T-cell receptor A6; HET: 3IB; 2.56A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 1qrn_D
Probab=34.20 E-value=25 Score=16.02 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=29.3
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 687323312048973799988710786047568998886689679885
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|+--|-...+..|++|.|+|...-.+ .-|..=|-|..|+|-..+
T Consensus 3 V~Q~p~~~~v~~G~svtL~C~~s~~~----~~~~~WyrQ~~g~~p~~l 46 (200)
T 2gj6_D 3 VEQNSGPLSVPEGAIASLNCTYSDRG----SQSFFWYRQYSGKSPELI 46 (200)
T ss_dssp EEECCSCEEEETTSCEEEEEEECCTT----CCEEEEEEECTTSCCEEE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCC----CCCEEEEEECCCCCCEEE
T ss_conf 59239987983999899999973537----588899997899997440
No 40
>2ial_A CD4+ T cell receptor E8 alpha chain; X-RAY crystallography, major histocompatibility complex, T cell stimulation, melanoma, tumor antigen; 1.92A {Homo sapiens} PDB: 2iam_C 2ian_D
Probab=33.56 E-value=26 Score=15.95 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=22.9
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 32331204897379998871078604756899888-668967988
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLK 61 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~ 61 (122)
.|-.-.+..|++|.|+|...- ..+.|-++ |.-|++-..
T Consensus 6 sP~~~~v~~G~svtL~C~~~~------~~~~~~WYrQ~pg~~~~~ 44 (202)
T 2ial_A 6 SPPDLILQEGANSTLRCNFSD------SVNNLQWFHQNPWGQLIN 44 (202)
T ss_dssp ECSEEEEETTCCEEEEEEECT------TEEEEEEEEECTTCCEEE
T ss_pred ECCEEEECCCCCEEEEEEECC------CCCCEEEEEECCCCCCCE
T ss_conf 099889738999999999678------854679999999997728
No 41
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=33.55 E-value=26 Score=15.95 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECC-CEEEEECCCCE
Q ss_conf 048973799988710786047568998886689-67988589846
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDG-AGTLKMSDGTV 67 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG-~G~L~~~dg~~ 67 (122)
...|+||++.|.+............. |+|..+ .-.+.+..|..
T Consensus 6 a~~G~tv~LpC~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 49 (110)
T 1ncn_A 6 AYFNETADLPCQFANSQNQSLSELVV-FWQDQENLVLNEVYLGKE 49 (110)
T ss_dssp EETTSCEEEECCCCCTTCCCGGGEEE-EEEETTCCEEEEEETTEE
T ss_pred EEECCEEEEEEEECCCCCCCCEEEEE-EEEECCCCEEEEEECCCC
T ss_conf 99198099984981887576169999-998089757999998860
No 42
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=33.51 E-value=14 Score=17.65 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=13.6
Q ss_pred CCEEEEEECCCCCCCCEEEEEE
Q ss_conf 8718999803688774279999
Q T0552 78 GETFRLYYTSASTDQQTVDVYF 99 (122)
Q Consensus 78 ~e~FrLYYtS~s~~~q~idv~v 99 (122)
.-.|++---.-|+.+|+|+|||
T Consensus 11 ni~Fgvta~~Nsa~~QtikvyI 32 (114)
T 1uzv_A 11 NTRFGVTAFANSSGTQTVNVLV 32 (114)
T ss_dssp TCEEEEEEEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEE
T ss_conf 7578599996167741699998
No 43
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2
Probab=32.45 E-value=10 Score=18.41 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=27.7
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 368732331204897379998871078604756899888668967988
Q T0552 14 SIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 14 ~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
.|.+==++ .++.|.++-| .+..|+|+=.||||.|-.+
T Consensus 66 ~vr~sDv~-~~~~gD~v~I----------~g~~Y~V~~v~PDg~G~t~ 102 (117)
T 1k0h_A 66 FVRTDEVR-QLRRGDTLTI----------GEENFWVDRVSPDDGGSCH 102 (117)
T ss_dssp EESSSSTT-TCCSSCEEEE----------TTTCEEBCCCCSSSCCCTT
T ss_pred EEECHHCC-CCCCCCEEEE----------CCEEEEEEEECCCCCCEEE
T ss_conf 98900166-8788998999----------9989999766359997699
No 44
>3h0t_B FAB fragment, heavy chain; peptide-FAB complex, antibiotic, antimicrobial, cleavage on PAIR of basic residues, disease mutation, disulfide bond, fungicide, hormone; 1.89A {Homo sapiens} PDB: 2g75_A 2dd8_H
Probab=32.04 E-value=27 Score=15.80 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=25.7
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 04897379998871078604756899888-668967988
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLK 61 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~ 61 (122)
..+|++|-|-|+. ....|+.--|.|-++ |+-|+|-.+
T Consensus 12 v~pG~SvtLsC~~-SG~~~s~~~~~~~WyRQ~pG~~le~ 49 (237)
T 3h0t_B 12 VKPSQTLSLTCAI-SGDSVSSNSAAWNWIRQSPSRGLEW 49 (237)
T ss_dssp ECTTSCEEEEEEE-ESSCTTCTTCEEEEEEEETTTEEEE
T ss_pred ECCCCCEEEEEEE-ECCCEECCCEEEEEEEECCCCCEEE
T ss_conf 9999995998999-5878336850489999699996360
No 45
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=31.35 E-value=28 Score=15.73 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=24.3
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEE
Q ss_conf 2048973799988710786047568998-88668967988
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLK 61 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~ 61 (122)
....|++|.|.|..-..=-.....+.|- |-|..|++-..
T Consensus 45 sv~~G~svtL~C~~S~~~~~~~~~~~i~WyrQ~pG~~~~~ 84 (252)
T 3bkj_L 45 PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKL 84 (252)
T ss_dssp EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE
T ss_pred EECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 9899999999998189875489971589998799999401
No 46
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 1mfe_L* 1mfb_L* 1mfc_L* 1mfd_L* 1etz_L* 1nc2_A* 1nc4_A* 1jnh_A* ...
Probab=30.12 E-value=29 Score=15.60 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 048973799988710786047568998886689679885
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
..+|++|-|.|... .|.....-|--=|-|..|++-..+
T Consensus 12 ~~pG~svtLsC~~s-~~~~~~~~~v~WyrQ~pG~~~~~~ 49 (212)
T 1q0x_L 12 TSPGETVTLTCRSS-TGAVTTSNYANWVQEKPDHLFTGL 49 (212)
T ss_dssp ECTTCCEEEEEEES-SSCCCGGGCCEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEEEEC-CCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 48999899999978-899875797899994898676303
No 47
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=30.03 E-value=22 Score=16.38 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=26.3
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 23312048973799988710786047568998886689679885
Q T0552 19 PVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|..-....|++|-|+|.+. +.. ..+.|.|+|-.|.+.+.+
T Consensus 14 ~~svtv~~G~tvtl~C~~s--~~~--~~~~~~Wy~q~~~~~~~~ 53 (120)
T 2yz1_A 14 EKSVSVAAGDSTVLNCTLT--SLL--PVGPIKWYRGVGQSRLLI 53 (120)
T ss_dssp SSEEEECTTCCEEECCEES--CCC--SCCCEEEEESSSTTCEEE
T ss_pred CCEEEECCCCCEEEEEEEC--CCC--CCCCEEEEEEECCCCEEE
T ss_conf 9989992899899989985--788--998599999849987999
No 48
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*
Probab=28.55 E-value=31 Score=15.43 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=29.8
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCC--CCCCEEEEEEEEECCCEEEEEC
Q ss_conf 3687323312048973799988710786--0475689988866896798858
Q T0552 14 SIETMPVPKKLKVGETAEIRCQLHRDGR--FEETKYFIRYFQPDGAGTLKMS 63 (122)
Q Consensus 14 ~v~tmPv~k~I~~GetvEIRc~L~reG~--y~~t~Y~IRYFQ~dG~G~L~~~ 63 (122)
+|. +|-.-....|++|.|.|....... -....+...|.+..|...+...
T Consensus 3 ~V~-~P~~v~~~~G~~V~LpC~f~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 53 (119)
T 1qfo_A 3 GVS-SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIH 53 (119)
T ss_dssp EEE-CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEE
T ss_pred EEE-CCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 998-487899986998999929928877788884799999779997307998
No 49
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, guanine nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=28.45 E-value=22 Score=16.38 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.6
Q ss_pred CCCEEEEEECCHHCCCCCEEEEEEEEEEC
Q ss_conf 68536873233120489737999887107
Q T0552 11 YPFSIETMPVPKKLKVGETAEIRCQLHRD 39 (122)
Q Consensus 11 YpF~v~tmPv~k~I~~GetvEIRc~L~re 39 (122)
--|.+++.-|+..+..+++-|||.+|++.
T Consensus 155 ~~~~~~vtf~~d~l~gd~~tei~v~~~~~ 183 (193)
T 3cue_D 155 VQLDCDVWFVSDILRGDSQTEIKVKLNRI 183 (193)
T ss_dssp TTCCCEEEECCCSSSSSSCBCEEEECCCC
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 79617999985246899852899985011
No 50
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=28.33 E-value=19 Score=16.79 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=15.0
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 871899980368877427999982
Q T0552 78 GETFRLYYTSASTDQQTVDVYFQD 101 (122)
Q Consensus 78 ~e~FrLYYtS~s~~~q~idv~veD 101 (122)
.-.|.+---.-|+.+|+|+|||-|
T Consensus 12 ni~Fgvta~~Nsa~~Qtvkv~iDd 35 (114)
T 2chh_A 12 NTSFGVTAFANAANTQTIQVLVDN 35 (114)
T ss_dssp TCEEEEEEEEEEEEEEEEEEEETT
T ss_pred CCEEEEEEEECCCCCEEEEEEECC
T ss_conf 747849999606873079999778
No 51
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=28.21 E-value=11 Score=18.29 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.6
Q ss_pred CCCCCEEEEEE
Q ss_conf 04897379998
Q T0552 24 LKVGETAEIRC 34 (122)
Q Consensus 24 I~~GetvEIRc 34 (122)
+.+|++|.+++
T Consensus 64 vp~G~~V~~~l 74 (135)
T 2cua_A 64 VPQGAEIVFKI 74 (135)
T ss_dssp EETTSEEEEEE
T ss_pred EECCCEEEEEE
T ss_conf 96899999999
No 52
>1mwa_A 2C alpha chain, 2C T cell receptor alpha chain; IG domain, antigen recognition, complementarity determining region, immune system; HET: NAG BMA; 2.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1g6r_A* 1tcr_A* 2ckb_A
Probab=27.70 E-value=32 Score=15.34 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=27.2
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 23312048973799988710786047568998886689679885
Q T0552 19 PVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|....+..|++|.|+|.....+. -|.-=|=|..|++-..+
T Consensus 7 ~~~vsv~~G~svtL~C~~s~s~~----~~~~WYrQ~pg~~p~~l 46 (202)
T 1mwa_A 7 DARVTVSEGASLQLRCKYSYSAT----PYLFWYVQYPRQGLQLL 46 (202)
T ss_dssp CSEEEEETTCCEEECCEEECSSC----CEEEEEEECTTSCEEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCCEE
T ss_conf 99599889998999999747888----87899999999996176
No 53
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.32 E-value=33 Score=15.30 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEECCCC
Q ss_conf 853687323312048973799988710786047568998886689679885898466255565178--871899980368
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLP--GETFRLYYTSAS 89 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~ypL~--~e~FrLYYtS~s 89 (122)
|..+..-|-.-.+..|++|.+.|++. |. ...|.|+. ||..+.++++|-+. ....+|--.+..
T Consensus 8 ~~~~~~~l~d~~v~~G~~~~l~C~v~--~~----~~~v~W~~----------~g~~l~~~~~~~~~~~~~~~~L~I~~~~ 71 (106)
T 2dlt_A 8 QLEVLQDIADLTVKAAEQAVFKCEVS--DE----KVTGKWYK----------NGVEVRPSKRITISHVGRFHKLVIDDVR 71 (106)
T ss_dssp CCCEEECCCCEEEESSCCEECCCEES--CS----SCEEEEEE----------SSCBCCCCSSCEEEEETTEEEEEESSCC
T ss_pred CEEEEECCCCEEEECCCEEEEEEECC--CC----CCEEEEEE----------EEECCCEEEEEEEECCCCEEEEEEECCC
T ss_conf 92999568658990899899998723--58----98199998----------6401100111254111233799830342
Q ss_pred -CCCCEEEEEEEECCCC
Q ss_conf -8774279999828886
Q T0552 90 -TDQQTVDVYFQDSFGQ 105 (122)
Q Consensus 90 -~~~q~idv~veDnfgq 105 (122)
.|+-...+.+.+..|.
T Consensus 72 ~~D~G~Y~c~a~n~~~~ 88 (106)
T 2dlt_A 72 PEDEGDYTFVPDGYALS 88 (106)
T ss_dssp TTTCSCEEEEEETSCCC
T ss_pred CCCCEEEEEEEECCEEE
T ss_conf 21458999999663099
No 54
>1ves_A VNAR, NEW antigen receptor variable domain; IG VNAR, 12Y-2, immune system; 2.18A {Orectolobus maculatus} SCOP: b.1.1.1 PDB: 2z8v_C 2z8w_C 2ywy_A 2ywz_A
Probab=27.09 E-value=33 Score=15.27 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=24.6
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEE
Q ss_conf 32331204897379998871078604756899888-66896798
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTL 60 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L 60 (122)
-|..-....|++|.|.|.... ..+. .+.|.++ |..|++--
T Consensus 6 ~P~sv~~~~G~~vtl~C~~~~-~~~~--~~~i~Wyrq~~g~~~~ 46 (113)
T 1ves_A 6 TPRTATKETGESLTINCVLRD-ASFE--LKDTGWYRTKLGSTNE 46 (113)
T ss_dssp ECSEEEECTTCCEEEEEEEES-CSSC--CCEEEEEEEETTCCCC
T ss_pred ECCEEEECCCCCEEEEEEECC-CCCC--CCCEEEEEECCCCCCC
T ss_conf 396789878999999999858-8136--9945677762257872
No 55
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=26.96 E-value=33 Score=15.26 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=43.3
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE-----CC-CCEECCC--CCCCC----------------CC
Q ss_conf 04897379998871078604756899888-6689679885-----89-8466255--56517----------------88
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM-----SD-GTVLLPN--DLYPL----------------PG 78 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~-----~d-g~~l~pn--D~ypL----------------~~ 78 (122)
..+|+++-|-|+. ....+.. |.|-++ |+-|+|-.++ .+ .+.+.|. .|.-+ ..
T Consensus 12 ~~pG~sl~lsC~~-SG~~~s~--y~~~WyRQ~PGk~le~l~~i~~~~~~~~y~~~~~~Rft~s~d~s~n~~~L~i~~l~~ 88 (219)
T 1c1e_H 12 KKPGETVKISCKA-SGYMFTN--YGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp ECTTCCEEEEEEE-ESSCGGG--SEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred ECCCCCEEEEEEE-ECCCHHH--CCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 8999995999999-5889574--948999938999869999995999942898446898898688345889999889983
Q ss_pred CEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 7189998036887742799998288865899985
Q T0552 79 ETFRLYYTSASTDQQTVDVYFQDSFGQLQQLTFS 112 (122)
Q Consensus 79 e~FrLYYtS~s~~~q~idv~veDnfgq~~ql~f~ 112 (122)
+.=-.||-...... .+..|.||+--.++..
T Consensus 89 eDsAvYYCA~~~~~----~~~~~~fG~GT~ltV~ 118 (219)
T 1c1e_H 89 EDMATYFCARGTTI----VRAMDYWGQGTSLTVS 118 (219)
T ss_dssp GGCEEEEEEEEETT----TTEEEEECCCEEEEEC
T ss_pred CCCEEEEEEECCCC----CCEECCCCCCEEEEEC
T ss_conf 54789999876875----2000236999999988
No 56
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 2a0l_C 3iy5_A
Probab=26.78 E-value=34 Score=15.24 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCCEEEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 873000331685368732331204897379998871078604756899888-668967988
Q T0552 2 NDDVDIQQSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLK 61 (122)
Q Consensus 2 dd~LDvqQ~YpF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~ 61 (122)
||+-||| -+|+-|.- +++||++-|-|+.- ...|. .|.|-++ |+-|+|-.+
T Consensus 5 ~~~~~v~-----L~eSg~~~--vkPG~sl~LsC~~S-G~~~~--~~~~~W~RQ~PGk~le~ 55 (257)
T 3gkz_A 5 DDDKEVQ-----LQESGPSL--VKPSQTLSLTCSVT-GDSVT--SGYWSWIRQFPGNKLDY 55 (257)
T ss_dssp ----CEE-----EEEECCSE--ECTTCCEEEEEEEE-ESCCS--SCEEEEEEECTTSCEEE
T ss_pred CCCCCEE-----EEEECCCE--ECCCCCEEEEEEEE-CCCHH--HCCEEEEEECCCCCEEE
T ss_conf 8998568-----76688856--89999949899995-77957--48299999389997699
No 57
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=26.76 E-value=34 Score=15.24 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 04897379998871078604756899888668967988
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
..+|++|.|.|.... |......|.--|=|.-|++-..
T Consensus 12 v~~G~tvtL~C~~s~-~~~~~~~~i~Wy~q~pg~~~~~ 48 (120)
T 1oaq_L 12 TSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTG 48 (120)
T ss_dssp ECTTCEEEEEEEETT-BCCCGGGCCEEEEEETTTEEEE
T ss_pred ECCCCCEEEEEEECC-CCCCCCCCEEEEECCCCCCCCC
T ss_conf 689998999999688-9987558688870079766102
No 58
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.32 E-value=34 Score=15.19 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=47.1
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEECCCC
Q ss_conf 853687323312048973799988710786047568998886689679885898466255565178--871899980368
Q T0552 12 PFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLP--GETFRLYYTSAS 89 (122)
Q Consensus 12 pF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~ypL~--~e~FrLYYtS~s 89 (122)
|..+..-+-...+..|++|.+.|.+....- .. .|.|| .+|..+.++++|-.. ...++|.-++..
T Consensus 8 p~~~~~~l~~~~v~~G~~~~l~C~v~~~~~-~~---~v~W~----------~~g~~i~~~~~~~~~~~~~~~~L~I~~v~ 73 (104)
T 2eny_A 8 HVGITKRLKTMEVLEGESCSFECVLSHESA-SD---PAMWT----------VGGKTVGSSSRFQATRQGRKYILVVREAA 73 (104)
T ss_dssp CCCCSBCCCCEEEESSCCEEEEEECSSCCC-SS---CBCCB----------SSSSBCSBCSSCEEEEETTEEEEEECSCC
T ss_pred CCEEEECCCCEEEECCCEEEEEEEEECCCC-CC---EEEEE----------ECCCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 959974796189928996999999705899-96---89999----------89934654013578617998899977885
Q ss_pred C-CCCEEEEEE
Q ss_conf 8-774279999
Q T0552 90 T-DQQTVDVYF 99 (122)
Q Consensus 90 ~-~~q~idv~v 99 (122)
. |+-.....+
T Consensus 74 ~~D~G~Y~C~a 84 (104)
T 2eny_A 74 PSDAGEVVFSV 84 (104)
T ss_dssp TTTCSCEEEEE
T ss_pred CCCCEEEEEEE
T ss_conf 11789999999
No 59
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=26.15 E-value=15 Score=17.45 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=15.4
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 871899980368877427999982
Q T0552 78 GETFRLYYTSASTDQQTVDVYFQD 101 (122)
Q Consensus 78 ~e~FrLYYtS~s~~~q~idv~veD 101 (122)
.-.|++-.-.-|+.+|+|+|||-|
T Consensus 11 ni~Fg~ta~~Nsa~~Qtikv~iDd 34 (113)
T 2bv4_A 11 RINFGVTVLVNSAATQHVEIFVDN 34 (113)
T ss_dssp TCEEEEEEEEEEEEEEEEEEEETT
T ss_pred CCEEEEEEEECCCCCEEEEEEECC
T ss_conf 757869999616763179999778
No 60
>3b9v_A Heavy chain variable domain; X-RAY crystallography, antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B
Probab=25.88 E-value=35 Score=15.14 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=27.1
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 31204897379998871078604756899888-6689679885
Q T0552 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM 62 (122)
Q Consensus 21 ~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~ 62 (122)
|.-+++||++-|.|+.- ...|. -|.|.++ |+-|||--++
T Consensus 9 ~~lvkPg~sl~LsC~~S-G~s~s--~y~~~WvRQ~PGkglEwl 48 (120)
T 3b9v_A 9 GGLVQPGGSLRLSCAAS-GFNIK--DTYIGWVRRAPGKGEEWV 48 (120)
T ss_dssp CEEECTTCCEEEEEEEE-SSCGG--GSEEEEEEECTTCCEEEE
T ss_pred CCEECCCCCCEEEEEEE-CCCCC--CCCEEEEECCCCCCEEEE
T ss_conf 81698998959989997-84811--581899975999866899
No 61
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=25.70 E-value=33 Score=15.28 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.8
Q ss_pred EEECCHHCCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 732331204897379998871078604756
Q T0552 17 TMPVPKKLKVGETAEIRCQLHRDGRFEETK 46 (122)
Q Consensus 17 tmPv~k~I~~GetvEIRc~L~reG~y~~t~ 46 (122)
.|-+|..+..|-+|.|+++|.+.|.-.+..
T Consensus 41 ~w~~P~~~~~~~~v~v~~~l~~dG~v~~~~ 70 (129)
T 1lr0_A 41 QWRRPPSARNGMSVEVLIEMLPDGTITNAS 70 (129)
T ss_dssp HCCCCTTCCTTCCEEEEEEECTTSBEEEEE
T ss_pred HCCCCCCCCCCCEEEEEEEEECCCCEEECC
T ss_conf 568998888897899999992799883220
No 62
>1pkq_A (8-18C5) chimeric FAB, light chain; autoantibody, multiple sclerosis, EAE, immune system; 3.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=25.58 E-value=35 Score=15.10 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=28.4
Q ss_pred ECCHHCCCCCEEEEEEEEEECC-CCCCCEEEEEEE-EECCCEEEEEC
Q ss_conf 2331204897379998871078-604756899888-66896798858
Q T0552 19 PVPKKLKVGETAEIRCQLHRDG-RFEETKYFIRYF-QPDGAGTLKMS 63 (122)
Q Consensus 19 Pv~k~I~~GetvEIRc~L~reG-~y~~t~Y~IRYF-Q~dG~G~L~~~ 63 (122)
|---.+.+|++|.|.|.....= .-....|.|.++ |..|+|-..+-
T Consensus 29 P~~l~v~~G~svtL~C~~s~~~~~~~~~~~~i~WyrQ~~g~~~~~l~ 75 (241)
T 1pkq_A 29 PSSLAVSAGEKVTMSCKSSQSLLNSGNQKNYLAWYQQKPGLPPKLLI 75 (241)
T ss_dssp SSEEEECTTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 99799999998999999489876478876757999857999978765
No 63
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=25.54 E-value=36 Score=15.10 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=21.1
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 204897379998871078604756899888668967
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAG 58 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G 58 (122)
....|++|.|.|.+. +.+.. -|-.-|-|..|++
T Consensus 12 ~~~~G~svtL~C~~s--~~~~~-~~i~WyrQ~~g~~ 44 (115)
T 2otu_A 12 SFSLGASAKLTCTLS--SQHST-YTIEWYQQQPLKP 44 (115)
T ss_dssp ECCTTCCEEEEEEEC--GGGTT-CCEEEEEECTTSC
T ss_pred EECCCCCEEEEEEEC--CCCCC-CCEEEEEECCCCC
T ss_conf 858999999999989--99987-7399999898999
No 64
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=25.51 E-value=36 Score=15.10 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCEEEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 73000331685368732331204897379998871078604756899888668967988
Q T0552 3 DDVDIQQSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 3 d~LDvqQ~YpF~v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
++|-|+|.=. .-.+..|++|.|.|.+... .. ...|.|+|..|.+.+.
T Consensus 2 ~e~~V~Q~~~--------sv~v~~G~svtL~C~~s~~--~~--~~~~~w~~~~~~~~~l 48 (127)
T 2jju_A 2 DELQVIQPEK--------SVSVAAGESATLRCAMTSL--IP--VGPIMWFRGAGAGREL 48 (127)
T ss_dssp -CCCEECCCS--------EEEEETTSCEEECCEESCC--CS--CCCEEEEECSSTTCEE
T ss_pred CCCEEEEECC--------EEEEECCCCEEEEEEEECC--CC--CCCEEEEECCCCCCEE
T ss_conf 8738990399--------8999299989999999488--89--9868999816999879
No 65
>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural genomics, ontario centre for structural proteomics, OCSP, unknown function; NMR {Agrobacterium tumefaciens str}
Probab=25.39 E-value=20 Score=16.69 Aligned_cols=28 Identities=39% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEEEEEEECCCCCCCE------EEEEEEEECCC
Q ss_conf 379998871078604756------89988866896
Q T0552 29 TAEIRCQLHRDGRFEETK------YFIRYFQPDGA 57 (122)
Q Consensus 29 tvEIRc~L~reG~y~~t~------Y~IRYFQ~dG~ 57 (122)
.--||-+|-..|+|.+|+ |+=||-- .|.
T Consensus 13 dg~Ir~eLlp~GRYdEaRg~r~sAYqGry~v-tG~ 46 (79)
T 2jmb_A 13 DGRIRQELLPNGRYDEARGNRKSAYQGRYEV-RGA 46 (79)
T ss_dssp SSSEEEEEETTTEEEEEETTEEEEEEEEEEE-ETT
T ss_pred CCCEEEEECCCCCEEHHCCCCCCCCEEEEEE-ECC
T ss_conf 9978878648984601127864413367999-566
No 66
>2esv_E KK50.4 T cell receptor beta chain; TCR, HLA-E, CMV, PMHC/TCR complex, immune system; 2.60A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3ffc_E
Probab=25.31 E-value=36 Score=15.07 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEE
Q ss_conf 323312048973799988710786047568998-8866896798
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTL 60 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L 60 (122)
.|--.-+..|++|-|+|... .| + +.|- |-|..|+|--
T Consensus 5 ~P~~~~~~~G~svtL~C~~~-~~-~----~~~~WyrQ~~g~~~~ 42 (240)
T 2esv_E 5 FPSHSVIEKGQTVTLRCDPI-SG-H----DNLYWYRRVMGKEIK 42 (240)
T ss_dssp ECSEEEEETTCCEEEEEECC-TT-C----SEEEEEEEETTSCEE
T ss_pred CCCEEEECCCCCEEEEEEEC-CC-C----CCEEEEEECCCCCCE
T ss_conf 99967968799699999989-99-6----508999988999819
No 67
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}
Probab=25.23 E-value=14 Score=17.65 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=37.1
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE-----CCCCEE----CCCCCCCC--CCCEEEEEECCCC
Q ss_conf 312048973799988710786047568998886689679885-----898466----25556517--8871899980368
Q T0552 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM-----SDGTVL----LPNDLYPL--PGETFRLYYTSAS 89 (122)
Q Consensus 21 ~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~-----~dg~~l----~pnD~ypL--~~e~FrLYYtS~s 89 (122)
.|.+..|++|.|.|.+.... +..|..-|-|..|++--.+ .+...- .++.|+-. .+..|.|--++..
T Consensus 8 v~tv~~G~svtL~C~~s~~~---~~~~i~Wyrq~~g~~p~~l~~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~L~I~~~~ 84 (137)
T 3bdb_A 8 VKTVKRGENVTMECSMSKVT---NKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAR 84 (137)
T ss_dssp ECCCCTTCEECCCCBCTTCC---CGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCC
T ss_pred EEEECCCCCEEEEEEECCCC---CCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCC
T ss_conf 06988999899999978998---788489999999999899999985899716256787767889820999789988998
Q ss_pred CC
Q ss_conf 87
Q T0552 90 TD 91 (122)
Q Consensus 90 ~~ 91 (122)
.+
T Consensus 85 ~~ 86 (137)
T 3bdb_A 85 ED 86 (137)
T ss_dssp ST
T ss_pred CH
T ss_conf 00
No 68
>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B*
Probab=24.39 E-value=12 Score=18.01 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=7.3
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 5556517887189998036
Q T0552 70 PNDLYPLPGETFRLYYTSA 88 (122)
Q Consensus 70 pnD~ypL~~e~FrLYYtS~ 88 (122)
||.+..=..+.-+|--||.
T Consensus 92 ~~~l~vp~g~~V~~~lts~ 110 (168)
T 1xme_B 92 PNPIEVPQGAEIVFKITSP 110 (168)
T ss_dssp SSSEEEETTSEEEEEEEBS
T ss_pred CCEEEEECCCEEEEEEEEC
T ss_conf 8889995899999999918
No 69
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=23.96 E-value=38 Score=14.93 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=28.5
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCE-EEEECCCCEECCC
Q ss_conf 687323312048973799988710786047568998-88668967-9885898466255
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAG-TLKMSDGTVLLPN 71 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G-~L~~~dg~~l~pn 71 (122)
+.--|..-.++.||.|-|||--...=+ +. +. |-|--|+- ..-...|-.|.|.
T Consensus 4 ltqspaslsvatgekvtircmtstdid--dd---mnwyqqkpgeppkflisegntlrpg 57 (107)
T 1i8k_A 4 LTQSPASLSVATGEKVTIRCMTSTDID--DD---MNWYQQKPGEPPKFLISEGNTLRPG 57 (107)
T ss_dssp EEEECSEEECCTTCCEEEEEEESSCCT--TC---EEEEEECTTSCCEEEEETTTEECTT
T ss_pred CCCCCCEEEEECCCEEEEEEECCCCCC--CC---CHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 122874157722870899983135635--54---0065528997981785478721899
No 70
>3bx7_C Cytotoxic T-lymphocyte-associated antigen 4; protein design, protein-protein complex, glycoprotein, immunoglobulin domain, polymorphism, transmembrane protein; 2.10A {Homo sapiens} PDB: 1i85_C 1ah1_A* 1i8l_C*
Probab=23.74 E-value=38 Score=14.89 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=47.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE----ECCCC--EECCCCCC--CCCCCEEEEEECCCCCCCCEE
Q ss_conf 04897379998871078604756899888668967988----58984--66255565--178871899980368877427
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK----MSDGT--VLLPNDLY--PLPGETFRLYYTSASTDQQTV 95 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~----~~dg~--~l~pnD~y--pL~~e~FrLYYtS~s~~~q~i 95 (122)
...|++|.|+|+..-.+.-.+ -+-..|-|..|++.-. +..+. .+.++-.. -.....+.|.-++....-..+
T Consensus 11 ~~~g~~vtL~C~~~~~~~~~~-~~~~Wyrq~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 89 (124)
T 3bx7_C 11 ASSRGIASFVCEYASPGKATE-VRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGL 89 (124)
T ss_dssp CCTTSCEEEEEECSCCCSSCE-EEEEEEEEETTEEEEEEEEEECTTSBCCCCTTCSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred EECCCCEEEEEECCCCCCCCE-EEEEEEEECCCCCCEEEEEECCCCCEEECCCCEEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 948983998967666666771-6899999893994399999908997583069809989798999999997788689999
Q ss_pred EE---EEE------ECCCCEEEEEEEECCC
Q ss_conf 99---998------2888658999853487
Q T0552 96 DV---YFQ------DSFGQLQQLTFSFNND 116 (122)
Q Consensus 96 dv---~ve------Dnfgq~~ql~f~Fnn~ 116 (122)
=+ ++. ..||+--+|.+-=.+.
T Consensus 90 YyCa~~~~~~~~~~~~fG~GT~L~V~~~~~ 119 (124)
T 3bx7_C 90 YICKVELMYPPPYYLGIGNGTQIYVIDPEP 119 (124)
T ss_dssp EEEEEEEEESSSCEEEECCCEEEECCCCCC
T ss_pred EEEEEECCCCCCCCEEECCCEEEEEECCCC
T ss_conf 999985575986307999999999974899
No 71
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=23.67 E-value=28 Score=15.74 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 1204897379998871078604756899888668967988
Q T0552 22 KKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLK 61 (122)
Q Consensus 22 k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~ 61 (122)
|.+..|++|.|.|.+.... ...|-.=|-|..|++-..
T Consensus 9 ~~v~~G~~vtl~C~~~~~~---~~~~~~WYrq~~g~~p~~ 45 (111)
T 2qhl_A 9 KTVKRGENVTMECSMSKVK---DKDKLAWYRQSFGKVPQY 45 (111)
T ss_dssp EECCTTCCEEECCBCTTCS---CGGGEEEEEECTTBCCEE
T ss_pred EEECCCCCEEEEEEECCCC---CCCEEEEEEECCCCCCEE
T ss_conf 7987799899999978987---888299999899998599
No 72
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3ffc_D
Probab=22.97 E-value=40 Score=14.80 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=28.5
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 687323312048973799988710786047568998886689679885
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
|.-.|-.-.+..|++|-|.|...... ...|-.=|-|..|++-..+
T Consensus 6 V~Q~p~~~~v~~G~~vtL~C~~~~~~---~~~~~~WYrQ~pg~~~~~l 50 (211)
T 2ak4_D 6 VTQAQTEISVVEKEDVTLDCVYETRD---TTYYLFWYKQPPSGELVFL 50 (211)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSC---SSCEEEEEEECTTCCCEEE
T ss_pred EEECCCEEEECCCCCEEEEEEECCCC---CCCCEEEEEECCCCCCEEE
T ss_conf 79459959982999999899876797---5773599999999986584
No 73
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, membrane, receptor, polymorphism, molecular mimicry, multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=22.51 E-value=41 Score=14.74 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=29.1
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEEE
Q ss_conf 687323312048973799988710786047568998-886689679885
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLKM 62 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~~ 62 (122)
|.-.|----+..|++|.|.|...- + .-|.|- |-|..|+|-..+
T Consensus 27 V~Q~P~~~~~~~G~svtL~C~~s~---~--~~~~~~WYrQ~pG~~l~~l 70 (279)
T 2wbj_D 27 VSQHPSWVISKSGTSVKIECRSLD---F--QATTMFWYRQFPKQSLMLM 70 (279)
T ss_dssp EEEECSEEEEETTSCEEEEEEESS---S--CEEEEEEEEECSSSCCEEE
T ss_pred EEECCCEEEECCCCCEEEEEEECC---C--CCCEEEEEEECCCCCEEEE
T ss_conf 996598389679997999999788---5--7524999999999986999
No 74
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens}
Probab=22.46 E-value=41 Score=14.73 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=5.8
Q ss_pred CCCCEEEEEEEE
Q ss_conf 489737999887
Q T0552 25 KVGETAEIRCQL 36 (122)
Q Consensus 25 ~~GetvEIRc~L 36 (122)
..|++|.++|..
T Consensus 17 ~eG~~v~l~C~v 28 (192)
T 2va4_A 17 ERGEEMTFSCRA 28 (192)
T ss_dssp TSCCCEEEECEE
T ss_pred CCCCCEEEEEEE
T ss_conf 659949999999
No 75
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=21.94 E-value=42 Score=14.67 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=50.5
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCC--CEEEEEECCCC-CCCCE
Q ss_conf 3233120489737999887107860475689988866896798858984662555651788--71899980368-87742
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPG--ETFRLYYTSAS-TDQQT 94 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~~dg~~l~pnD~ypL~~--e~FrLYYtS~s-~~~q~ 94 (122)
-|-...+..|++|.+.|.+. |+=......|.|+.-+ +..+...++..+..++.+-... ..++|.-.+.. .|.-.
T Consensus 13 ~p~~~~v~~G~~v~l~C~v~--g~P~~~~p~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 89 (126)
T 2dav_A 13 KPQGGTVKVGEDITFIAKVK--AEDLLRKPTIKWFKGK-WMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 89 (126)
T ss_dssp CCCCCEEETTCCEEEEEEEE--CCCSSSCCEEEEEESS-SCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred CCCCEEEECCCEEEEEEEEC--CCCCCCCCEEEEEEEE-CEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCHHHCEE
T ss_conf 79739996999999999877--7776889989999742-10100268822565222567760688999991268766929
Q ss_pred EEEEEEECCCCE
Q ss_conf 799998288865
Q T0552 95 VDVYFQDSFGQL 106 (122)
Q Consensus 95 idv~veDnfgq~ 106 (122)
....+...+|..
T Consensus 90 Y~C~a~N~~G~~ 101 (126)
T 2dav_A 90 YRCEVTYKDKFD 101 (126)
T ss_dssp EEEEEECSSCEE
T ss_pred EEEEEEECCCEE
T ss_conf 999999799989
No 76
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=21.79 E-value=42 Score=14.65 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=49.0
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCC-CCEEEEEEEEECCCEEEEEC--CCCEEC----CCCCCCCC----CCEEEE
Q ss_conf 68732331204897379998871078604-75689988866896798858--984662----55565178----871899
Q T0552 15 IETMPVPKKLKVGETAEIRCQLHRDGRFE-ETKYFIRYFQPDGAGTLKMS--DGTVLL----PNDLYPLP----GETFRL 83 (122)
Q Consensus 15 v~tmPv~k~I~~GetvEIRc~L~reG~y~-~t~Y~IRYFQ~dG~G~L~~~--dg~~l~----pnD~ypL~----~e~FrL 83 (122)
|+..+=...++.|++|-|.|..... .+. ...|- |-|..|++-..+- ++..-. .++|+.+. ...|.|
T Consensus 7 v~~~e~~~~v~eG~svtL~C~y~~~-~~~~~~~~W--yrq~~g~~~~~i~~~~~~~~~~~~~~~~Rf~i~~~~~~~~~~L 83 (127)
T 1q8m_A 7 TKLTEEKYELKEGQTLDVKCDYTLE-KFASSQKAW--QIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRV 83 (127)
T ss_dssp EEECEEEEEEETTCCEEEEEECCCG-GGTTSCEEE--EEEETTTEEEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEE
T ss_pred EEEECCCEEECCCCCEEEEEEEECC-CCCCCCEEE--EECCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 5976886799059959999999289-856885799--9948999978999973898739977588499999998899999
Q ss_pred EECCCCCC-CCEEEEEEE---E---CCCCEEEEEEEECCC
Q ss_conf 98036887-742799998---2---888658999853487
Q T0552 84 YYTSASTD-QQTVDVYFQ---D---SFGQLQQLTFSFNND 116 (122)
Q Consensus 84 YYtS~s~~-~q~idv~ve---D---nfgq~~ql~f~Fnn~ 116 (122)
--++...+ +-.----+. + .|++-.+|+.++...
T Consensus 84 tI~~l~~~Dsg~Y~Cav~~~~~~~~~~~~~~rL~Vt~e~~ 123 (127)
T 1q8m_A 84 RMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLEHH 123 (127)
T ss_dssp EECSCCGGGCEEEEEEECCCTTSCEEECCEEEEEEECC--
T ss_pred EECCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEEEEC
T ss_conf 9855887669899889962999978993998999998621
No 77
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=21.68 E-value=42 Score=14.64 Aligned_cols=37 Identities=14% Similarity=0.407 Sum_probs=27.2
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 204897379998871078604756899888-6689679885
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLKM 62 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~~ 62 (122)
-+++|+++-|-|+. ..-.| +.|.|.++ |+-|||-.+|
T Consensus 11 ~vkPg~sl~LsC~~-SG~~~--s~y~~~WvRQ~pGkglew~ 48 (121)
T 1kxv_C 11 TVPAGGSLRLSCAA-SGNTL--CTYDMSWYRRAPGKGRDFV 48 (121)
T ss_dssp EECTTCCEEEEEEE-ESCTT--CCEEEEEEEECTTSCEEEE
T ss_pred EECCCCCCEEEEEE-ECCCH--HHCCEEEEEECCCCCEEEE
T ss_conf 69999894998998-59895--6496899993899987999
No 78
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=21.30 E-value=43 Score=14.59 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=25.1
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 323312048973799988710786047568998886689679885
Q T0552 18 MPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 18 mPv~k~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
-|--.....|++|.|+|...-... .|..=|-|..|++-..+
T Consensus 7 ~P~~~~~~~G~svtL~C~~s~~~~----~~~~WYrQ~~g~~~~~l 47 (108)
T 1jhl_L 7 SPSYLVASPGETITINCRASKSIS----KSLAWYQEKPGKTNNLL 47 (108)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCT----TCEEEEEECTTSCCEEE
T ss_pred CCCEEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCCEE
T ss_conf 699589889998999999368898----98899988999998689
No 79
>3idg_B 2F5 FAB heavy chain; HIV-1, 2F5, immune system; 1.86A {Homo sapiens} PDB: 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 2pr4_H 3drq_B 2p8m_B 2p8p_B 2pw1_B 2pw2_B 3dro_B 2p8l_B 3drt_B 3egs_B 1tjg_H* 1tjh_H* 1tji_H* 2f5b_H ...
Probab=21.19 E-value=43 Score=14.57 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=24.1
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEEE
Q ss_conf 2048973799988710786047568998-886689679885
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLKM 62 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~~ 62 (122)
-+++|+||-|-|+.- .+.+..-.|.|- |-|+.|+|-.++
T Consensus 11 lv~pG~svtLsC~~S-G~~~s~~~~~~~WyrQ~pG~~~e~l 50 (237)
T 3idg_B 11 LVKPTQTLTLTCSFS-GFSLSDFGVGVGWIRQPPGKALEWL 50 (237)
T ss_dssp EECTTCCEEEEEEEE-SSCTTSTTCEEEEEEECTTSCCEEE
T ss_pred EECCCCCEEEEEEEE-CCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 499997969869995-8784479972899995899986999
No 80
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=21.11 E-value=43 Score=14.56 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEEE
Q ss_conf 312048973799988710786047568998-886689679885
Q T0552 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIR-YFQPDGAGTLKM 62 (122)
Q Consensus 21 ~k~I~~GetvEIRc~L~reG~y~~t~Y~IR-YFQ~dG~G~L~~ 62 (122)
+.-+++||++-|-|+.- .-.| +.|.|. |=|+-|+|-.++
T Consensus 9 ~~~~kpg~sl~LsC~~S-G~s~--~~y~~~WvRQ~PGkglewl 48 (120)
T 1n4x_H 9 PELKKPGETVKISCKAT-NYAF--TDYSMHWVKQAPGGDLKYV 48 (120)
T ss_dssp CEEECTTCCEEEEEEEE-SSCG--GGSCEEEEEECTTSCEEEE
T ss_pred CEEECCCCCEEEEEEEE-CCCC--CCCCEEEEEECCCCCEEEE
T ss_conf 80798999979999962-8794--2487799993899877999
No 81
>1c5d_H Monoclonal antibody against the main immunogenic region of the human muscle acetylcholine...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B
Probab=20.76 E-value=44 Score=14.52 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 04897379998871078604756899888-668967988
Q T0552 24 LKVGETAEIRCQLHRDGRFEETKYFIRYF-QPDGAGTLK 61 (122)
Q Consensus 24 I~~GetvEIRc~L~reG~y~~t~Y~IRYF-Q~dG~G~L~ 61 (122)
+++|+++-|-|..- ...|. .|.|.++ |+-|+|--+
T Consensus 12 v~pG~sl~lsC~~S-G~s~s--~~~~~WyrQ~PGk~le~ 47 (215)
T 1c5d_H 12 VQPSQTLSLTCTVS-GFPLT--TNGVSWVRQPPGKGLEW 47 (215)
T ss_dssp ECTTCCEEEEEEEC-SSCTT--SCCEEEEEECTTSCCEE
T ss_pred ECCCCCCEEEEEEE-CCCHH--HCCEEEEEECCCCCEEE
T ss_conf 99999929999997-77968--89799998089998799
No 82
>1rzf_L FAB E51 light chain; HIV-1, GP120, CD4I, antibodies, tyrosine sulfation, VH-gene usage, immune system; 1.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1q1j_L 3c2a_L 3ghb_L 3gbn_L* 3gbm_L* 1nl0_L* 3d69_L 3h42_L 3g04_A* 1zvo_A 1bjm_A 3bjl_A 4bjl_A 1aqk_L 2j6e_L* 2jb5_L* 2jb6_A* 2b1h_L 2b1a_L 2b0s_L ...
Probab=20.01 E-value=46 Score=14.42 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=24.2
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 2048973799988710786047568998886689679885
Q T0552 23 KLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKM 62 (122)
Q Consensus 23 ~I~~GetvEIRc~L~reG~y~~t~Y~IRYFQ~dG~G~L~~ 62 (122)
..++|+||-|.|.+.. .++.+. |-.=|-|..|+|-..+
T Consensus 11 ~~~pG~tvtLsC~~s~-~~~~~~-~v~WyrQ~pG~~p~~~ 48 (213)
T 1rzf_L 11 SAAPGQKVTISCSGSS-SNIGNN-DVSWYQQFPGTVPKLV 48 (213)
T ss_dssp EECTTSCEEEEEECCC-CCCCTS-CEEEEEECTTSCCEEE
T ss_pred EECCCCCEEEEEEECC-CCCCCC-CEEEEEECCCCCCEEE
T ss_conf 9489998999999787-887798-4899996899842754
Done!