Query T0553 NsR123E , , 141 residues
Match_columns 141
No_of_seqs 113 out of 300
Neff 4.5
Searched_HMMs 22458
Date Fri May 21 18:04:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0553.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0553.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1snl_A Nucleobindin 1, calnuc; 38.3 19 0.00086 16.7 2.9 55 12-66 38-102 (103)
2 2k9s_A Arabinose operon regula 25.8 35 0.0015 15.1 4.2 45 21-65 38-82 (107)
3 2d8n_A Recoverin; structural g 24.3 37 0.0017 14.9 4.3 55 49-111 84-140 (207)
4 2ggm_A Centrin-2; EF-hand supe 22.6 21 0.00096 16.4 1.0 20 45-64 76-95 (172)
5 2bec_A Calcineurin B homologou 22.4 21 0.00091 16.5 0.8 16 49-64 74-89 (202)
6 1ucv_A Ephrin type-A receptor 20.0 42 0.0019 14.5 2.0 29 49-78 4-32 (81)
7 1pva_A Parvalbumin; calcium bi 19.5 42 0.0019 14.6 1.9 18 49-66 21-38 (110)
8 2ppw_A Conserved domain protei 19.0 38 0.0017 14.8 1.6 36 56-92 181-216 (216)
9 2k7c_A CABP1, calbrain, calciu 18.8 48 0.0021 14.2 3.0 16 49-64 57-72 (72)
10 2zc2_A DNAD-like replication p 17.8 51 0.0023 14.1 3.8 29 85-114 9-37 (78)
No 1
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=38.28 E-value=19 Score=16.66 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHH----HHHHCCHHHHHHHHH------CCCCCHHHHHHHHHCCH
Q ss_conf 98899999999988883000223----542200368899874------69977899999985147
Q T0553 12 DKAAIKTLISAAYRQIFERDIAP----YIAQNEFSGWESKLG------NGEITVKEFIEGLGYSN 66 (141)
Q Consensus 12 d~~~l~~vI~AaYrQVf~~~~~~----~~~~~r~~~lESqlr------~g~IsVReFVr~LakS~ 66 (141)
|.+++..++++...++....-.. .....-...++..++ +|.||..||++++.+-+
T Consensus 38 ~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~DG~Is~eEF~~~~~~~e 102 (103)
T 1snl_A 38 DEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102 (103)
T ss_dssp EHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 79999999999887523011131102354767999999999981899998194999999873369
No 2
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.85 E-value=35 Score=15.09 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 999888830002235422003688998746997789999998514
Q T0553 21 SAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYS 65 (141)
Q Consensus 21 ~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~LakS 65 (141)
....++.+|--+..+....|+..+...|.+++.++.|-...++-+
T Consensus 38 ~r~f~~~~g~s~~~~i~~~Rl~~a~~lL~~~~~~i~~IA~~~Gf~ 82 (107)
T 2k9s_A 38 SHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFD 82 (107)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 999999989299999998999999998865575199999996899
No 3
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=24.29 E-value=37 Score=14.90 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=28.2
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 46997789999998514788872266787167888876554--0779999889999999987258
Q T0553 49 GNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHF--LGRAPIDQAEIRKYNQILATQG 111 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~IEl~~khl--LGR~p~~~~Ei~~~~~i~a~~G 111 (141)
.+|.|+.+||+.++... .....-.-++.+|+.+ =|..-.+..|+...........
T Consensus 84 ~~g~I~f~EFl~~~~~~--------~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~ 140 (207)
T 2d8n_A 84 LDGTLDFKEYVIALHMT--------TAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMI 140 (207)
T ss_dssp CCSEEEHHHHHHHHHHH--------SCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHS
T ss_pred CCCEEEEHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHC
T ss_conf 99816412565554330--------2565376899999976108998171999999999986522
No 4
>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} SCOP: a.39.1.5 PDB: 1zmz_A 2ami_A
Probab=22.63 E-value=21 Score=16.37 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=14.7
Q ss_pred HHHHHCCCCCHHHHHHHHHC
Q ss_conf 99874699778999999851
Q T0553 45 ESKLGNGEITVKEFIEGLGY 64 (141)
Q Consensus 45 ESqlr~g~IsVReFVr~Lak 64 (141)
-..-.+|.|+..||+..+..
T Consensus 76 ~d~~~~~~I~~~eF~~~~~~ 95 (172)
T 2ggm_A 76 IDKEGTGKMNFGDFLTVMTQ 95 (172)
T ss_dssp HTTTCCSEEEHHHHHHHHHH
T ss_pred CCCCCCCEEECHHHHHHHHH
T ss_conf 25678973500789999999
No 5
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=22.37 E-value=21 Score=16.49 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.3
Q ss_pred HCCCCCHHHHHHHHHC
Q ss_conf 4699778999999851
Q T0553 49 GNGEITVKEFIEGLGY 64 (141)
Q Consensus 49 r~g~IsVReFVr~Lak 64 (141)
.+|.|+..||++.++.
T Consensus 74 ~~g~I~~~eF~~~~~~ 89 (202)
T 2bec_A 74 GSQRVDFPGFVRVLAH 89 (202)
T ss_dssp SCCCCCHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 7887549999999988
No 6
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=19.95 E-value=42 Score=14.55 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=21.7
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 469977899999985147888722667871
Q T0553 49 GNGEITVKEFIEGLGYSNLYLKEFYTPYPN 78 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~~yr~~f~~~~~~ 78 (141)
.++.+||.++.+++..++ |...|-+....
T Consensus 4 ~~~~~sV~~WL~~lgL~~-Y~~~F~~~gi~ 32 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHHCCC
T ss_conf 999870999998886099-99999980978
No 7
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=19.47 E-value=42 Score=14.56 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=13.9
Q ss_pred HCCCCCHHHHHHHHHCCH
Q ss_conf 469977899999985147
Q T0553 49 GNGEITVKEFIEGLGYSN 66 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~ 66 (141)
.+|.|+-+||+..++.+.
T Consensus 21 ~dg~idf~eF~~~~~~~~ 38 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKA 38 (110)
T ss_dssp STTCCCHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 999887999999998614
No 8
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4}
Probab=19.02 E-value=38 Score=14.81 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=26.1
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999998514788872266787167888876554077
Q T0553 56 KEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGR 92 (141)
Q Consensus 56 ReFVr~LakS~~yr~~f~~~~~~~r~IEl~~khlLGR 92 (141)
+|++++...++-|++-||..+-+... .--.|-+||+
T Consensus 181 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~ 216 (216)
T 2ppw_A 181 QDFLKDTISGKYFQEYFFENCQDDEV-AAYLKEVLAK 216 (216)
T ss_dssp HHHHHHHSCSHHHHHHHHHHCCCHHH-HHHHHC----
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHH-HHHHHHHHCC
T ss_conf 99999886444589999981880899-9999998549
No 9
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=18.79 E-value=48 Score=14.20 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=10.7
Q ss_pred HCCCCCHHHHHHHHHC
Q ss_conf 4699778999999851
Q T0553 49 GNGEITVKEFIEGLGY 64 (141)
Q Consensus 49 r~g~IsVReFVr~Lak 64 (141)
++|.|+..||+..+.+
T Consensus 57 ~dG~I~~~EF~~~m~k 72 (72)
T 2k7c_A 57 GDGRVDFEEFVRMMSR 72 (72)
T ss_dssp SSCCEEHHHHHHHHHC
T ss_pred CCCEEEHHHHHHHHCC
T ss_conf 9983849999999767
No 10
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=17.82 E-value=51 Score=14.07 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 765540779999889999999987258145
Q T0553 85 GTKHFLGRAPIDQAEIRKYNQILATQGIRA 114 (141)
Q Consensus 85 ~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a 114 (141)
.|.+.+||++. +.|+..-...+..-|++.
T Consensus 9 ~~e~~fGr~ls-~~e~e~i~~w~~~~~~~~ 37 (78)
T 2zc2_A 9 DFERELGRMLS-PFELEDLQKTVSDDKTDP 37 (78)
T ss_dssp HHHHHHTSCCC-HHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHCCCH
T ss_conf 99998779999-999999999998829999
Done!